Index (MIPAV API Documentation)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes All Packages

A

a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
a - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
a - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
a - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.Gamma
a - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input parameter
a - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
a - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
a - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
a - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
a - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
a - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
a - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
a() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
A - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
A - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
A - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
A - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
A - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex
A - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
A - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Affine
A - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
A - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
A - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
A() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
A_array - Variable in class gov.nih.mipav.model.algorithms.dataStruct
a_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the alpha value of this pixel at its current position.
A_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: This is an x clip slice.
a_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
A_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
a_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
a_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a_offset - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
a_squared_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TukeyLoss
a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a0 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
a0 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
a0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
a0Num - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
a0Num - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
a1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
a1 - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a1 - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
A1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
a11 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a11 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a12 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a13 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
A1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a21 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a22 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a22 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a23 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a33 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
aaAccurateSmoothing - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
Aac - gov.nih.mipav.model.file.MetadataExtractor.FileType
AAM_MAX2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the max function with two given double values.
AAM_MAX3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the max function for three given double values.
AAM_MIN2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the min function for two given double values.
AAM_MIN3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the min function for three given double values.
aam_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
aaMask - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aamc - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
aamc() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.aamc
aamClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMdef - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
AAMdef() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
aamGroupRename() - Method in class gov.nih.mipav.view.ViewJFrameImage
aamGroups() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMinitialization() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Atlas based AAM segmentation.
AAMLoadAnalyzerSynthesizer(DataInputStream, CAAMReferenceFrame) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyzer/Synthesizer loader.
AAMLoadTransferFunction(DataInputStream, CAAMModel) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: The function loads a transfer function from a stream, instantiates the correct concrete class and returns a base class pointer.
aamMLClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes
AAMRound(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: Round up function
aaPatch - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaPatchX - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaPatchY - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
abbrev - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset labels.
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset labels.
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset labels.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset min, max values.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset min, max values.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset min, max values.
abort - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: If true stop processing.
abort() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Aborts an association and closes the socket.
AbortingIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.AbortingIterationCallback
abortRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Abort connection request.
about() - Method in class gov.nih.mipav.view.ViewJFrameImage: Makes an aboutDialog box and displays information of the image plane presently being displayed.
about() - Method in class gov.nih.mipav.view.ViewUserInterface: Creates simple dialog that describes basic info about MIPAV, with MIPAV as the title.
about(int, int) - Method in class gov.nih.mipav.view.ViewJFrameBase: Makes an aboutDialog box that displays information about the image slice.
about(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates a fairly simple plain-text viewing box.
ABOUT_MIPAV - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: Access about mipav panel
aboutDataProvenance() - Method in class gov.nih.mipav.view.ViewUserInterface: Displays the system data provenance using a simple dialog with table and jtextarea (for current selection).
aboutJava() - Method in class gov.nih.mipav.view.ViewUserInterface: Creates simple dialog that describes basic info about the version of Java.
aboutPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
ABOVE - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
aboveMedian - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: factor above median at which edge values are taken to zero.
aboveMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: The factor above which second stage edge erosion occurs.
abs() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the absolute value of this value.
Abs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes the absolute valueof each element.
abs1(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
Abs2Rel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from absolute to relative.
Abs2Rel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from absolute to relative by using the hostimage.
absBiggest(double, double, double) - Method in class gov.nih.mipav.model.file.FileIO: Helper method for finding biggest (absolute value) of three numbers.
absButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
abscissa - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
abscissa - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: abscissa of convergence of the Laplace transform.
absEps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
absEps - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: absolute accuracy requested.
abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2: Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
abserr - Variable in class gov.nih.mipav.model.algorithms.ODE
abserr - Variable in class gov.nih.mipav.model.algorithms.ODEEP
absGtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absGw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absHtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absHw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absMinThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: pixel does not get remapped when pixel is below threshold.
ABSOLUTE_VALUE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
ABSOLUTE_VALUE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
absoluteGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Method that goes to the absolute voxel coordinate that is entered
absoluteGoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current absolute position:.
absoluteLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: Labels for the current absolute position:.
absoluteLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current absolute position values:.
absoluteLabelVals - Variable in class gov.nih.mipav.view.ViewJFrameBase: Labels for the current absolute position values:.
absolutePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: JPanel containing the absoulte position labels:.
absolutePanel - Variable in class gov.nih.mipav.view.ViewJFrameBase: JPanel containing the absoulte position labels:.
absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: total number of voxels at a particular nonzero level.
absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: total number of id voxels in true image.
absoluteValue(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: absolute value
absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileAnalyze: Take the absolute value of image.
absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileNIFTI: Absolute value of image.
absoluteWindowLevelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
absoluteXLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteXTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteYLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteYTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteZLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteZTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
abssq(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
absstp - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
absSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Abstract syntax object.
abstol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
abstol - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
aButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
ac - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
AC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass
ac_cur_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_derived_tbl - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_derived_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_huff_tbl_ptrs - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
AC_STAT_BINS - Static variable in class gov.nih.mipav.model.file.libjpeg
ac_stats - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
ac_tbl_no - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
ac1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
acc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
accept(File) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: FileFilter override.
accept(File) - Method in class gov.nih.mipav.view.ViewImageFileFilter: One of the overrides to FileFilter.
accept(String) - Method in class gov.nih.mipav.view.ViewImageFileFilter: Checks if extension matches what is accepted for the filter type.
acceptedChars - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
acceptedSocket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Socket used to receive the data.
acceptorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
acceptorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
acceptorImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
acceptorRun - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: If acceptorRun is true, run on 3 images with acceptor dye only.
acceptorRun - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
access_virt_barray(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_barray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
access_virt_sarray8(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
access_virt_sarray9to12(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
accessionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
accessLock - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
accessoryPanel - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: permits the caller to get a value out of the primary table by using the name given to the fileInfo.
accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: permits the caller to get a value out of the primary table by using the name given to the fileInfo.
accumulate - Variable in class gov.nih.mipav.model.algorithms.SVM
accumulate_hom - Variable in class gov.nih.mipav.model.algorithms.SVM
accumulated_candidate_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
accumulated_reference_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
accumulateFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
accumulateFunction(int, SVM.VlSvmDataset, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM
accuracy - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
aCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
aCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
acins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
acins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
ackleyNum - Variable in class gov.nih.mipav.model.algorithms.NelderMead
AclipPlanePts - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane four corners points.
aClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean visibility values for x, y, z, arbitrary clipping slider frames.
ACOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ACOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
acos() - Method in class gov.nih.mipav.util.DoubleDouble: For all -1
ACPC_ANTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_INFERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_LATERAL - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_POSTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_SUPERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_TO_ORIG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ACPC_TO_ORIG - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
ACPC_TO_TLRC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ACPC_TO_TLRC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
acpcAC - Variable in class gov.nih.mipav.model.file.FileAfni: Anterior Comissure in acpc space.
acpcAC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Anterior Comissure in acpc space.
acpcACFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Image dimensions.
acpcDimFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
ACPCGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ACPCImage - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
acpcMax - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMax - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC min and max extents of the brain.
acpcMaxCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMaxFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcMaxPt - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcMin - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMin - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC min and max extents of the brain.
acpcMinCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMinFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: TLRC Specific info.
acpcMinPt - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Posterior Comissure in acpc space.
acpcPC - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcPCCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcPCFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcRes - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcRes - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Voxel resolution (cubic).
acpcRes - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResField - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcResLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResOrg - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResText - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcToOrig(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to orig...matrix is implicitly inverted in code.
acpcToOrig(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to orig...matrix is implicitly inverted in code.
acpcToTlrc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to tlrc.
acpcToTlrc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to tlrc.
acqGradMat - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
acquiredCardiacCycles - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredCardiacCyclesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredStudyDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredStudyDurationIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquisitionBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
AcquisitionDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
acquisitionMatrix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
acquisitionMode - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AcquisitionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
acquisitionOrientationField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
acquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AcquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
AcquisitionTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
actInt(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
action - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor
action - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: action describing the event
action - Variable in class gov.nih.mipav.model.scripting.ParsedActionLine: The String representing the action which should be taken when this line is executed.
action - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
action - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: Current notes for the node.
ActionAdapter() - Constructor for class gov.nih.mipav.view.MipavUtil.ActionAdapter: Creates a new ActionAdapter object.
ActionBase - Class in gov.nih.mipav.model.scripting.actions: A base class for all non-algorithmic (not JDialog*) script actions.
ActionBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionBase
ActionChangeEndianess - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's endianess
ActionChangeEndianess() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeEndianess(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: Main constructor with parameters for changing the endianess
ActionChangeModality - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's modality
ActionChangeModality() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeModality(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality: Main constructor with parameters for changing the modality
ActionChangeName - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the name of an image.
ActionChangeName() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeName(ModelImage, String, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName: Constructor used to record the ChangeName script action line.
ActionChangeOrientations - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's orientations
ActionChangeOrientations() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeOrientations(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: Main constructor with parameters for changing the orientations
ActionChangeOrigin - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's origin
ActionChangeOrigin() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeOrigin(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: Main constructor with parameters for changing the origin
ActionChangeResolutions - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions.
ActionChangeResolutions() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeResolutions(ModelImage, boolean, int, float) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Main constructor with parameters for changing the resolution/slice thickness.
ActionChangeTalairachInfo - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's talairach information
ActionChangeTalairachInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeTalairachInfo(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: Main constructor with parameters for changing the talairach information
ActionChangeTransformInfo - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions
ActionChangeTransformInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeTransformInfo(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: Main constructor with parameters for changing the transform information
ActionChangeUnits - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions
ActionChangeUnits() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeUnits(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: Main constructor with parameters for changing the units of measure
ActionClone - Class in gov.nih.mipav.model.scripting.actions: A script action which clones an input image and puts it into a new image frame.
ActionClone() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone: Constructor for the dynamic instantiation and execution of the script action.
ActionClone(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone: Constructor used to record the script action line.
ActionCloseFrame - Class in gov.nih.mipav.model.scripting.actions: An action which closes the frame containing an image.
ActionCloseFrame() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: Constructor for the dynamic instantiation and execution of the script action.
ActionCloseFrame(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: Constructor used to record the script action line.
ActionCollectGarbage - Class in gov.nih.mipav.model.scripting.actions: Forces the JVM to perform a garbage collection of un-referenced memory.
ActionCollectGarbage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCollectGarbage
ActionCreateBlankImage - Class in gov.nih.mipav.model.scripting.actions: A script action which creates a new blank image with a set of characteristics.
ActionCreateBlankImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Constructor for the dynamic instantiation and execution of the CreateBlankImage script action.
ActionCreateBlankImage(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Constructor used to record the CreateBlankImage script action line.
actionDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
ActionDiscovery - Interface in gov.nih.mipav.view.dialogs: Classes which implement this interface are able to report metainformation about themselves, return their input and output parameters, run their action using a set of input parameters, retrieve the real name of images they output, and return whether they have completed successfully.
ActionExit - Class in gov.nih.mipav.model.scripting.actions: A script action which causes MIPAV to exit completely.
ActionExit() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExit
ActionExtractImageB - Class in gov.nih.mipav.model.scripting.actions: An action which extracts the imageB from a frame and puts it into a new image frame.
ActionExtractImageB() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: Constructor for the dynamic instantiation and execution of the script action.
ActionExtractImageB(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: Constructor used to record the script action line.
actionField - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: NoteField for providing a note about this marker.
ActionImageProcessorBase - Class in gov.nih.mipav.model.scripting.actions: A base class for script actions which perform their action using an input image.
ActionImageProcessorBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor for the dynamic instantiation and execution of the script action.
ActionImageProcessorBase(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor used to record the Clone script action line.
ActionImageProcessorBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor used to record the Clone script action line.
ActionKeyListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
actionListener - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
ActionMaskToPaint - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a paint mask based on a mask image.
ActionMaskToPaint() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: Constructor for the dynamic instantiation and execution of the MaskToPaint script action.
ActionMaskToPaint(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: Constructor used to record the MaskToPaint script action line.
ActionMaskToVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a VOI from a mask image.
ActionMaskToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: Constructor for the dynamic instantiation and execution of the MaskToVOI script action.
ActionMaskToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: Constructor used to record the MaskToVOI script action line.
ActionMetadata - Interface in gov.nih.mipav.view.dialogs
ActionMetadata.ImageRequirements - Enum in gov.nih.mipav.view.dialogs
ActionOpenAllVOIs - Class in gov.nih.mipav.model.scripting.actions: A script action which opens all VOIs from the directory where VOIs are saved by default when a SaveAllVOIs action is executed.
ActionOpenAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: Constructor for the dynamic instantiation and execution of the OpenAllVOIs script action.
ActionOpenAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: Constructor used to record the OpenAllVOIs script action line.
ActionOpenImage - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the opening of an image
ActionOpenImage(ModelImage) - Constructor for class gov.nih.mipav.model.provenance.actions.ActionOpenImage: Constructor used to record the provenance action line
ActionOpenVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which opens a VOI from disk and adds it to an image.
ActionOpenVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: Constructor for the dynamic instantiation and execution of the OpenVOI script action.
ActionOpenVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: Constructor used to record the OpenVOI script action line.
ActionPaintToMask - Class in gov.nih.mipav.model.scripting.actions: A script action which converts all paint within an image to some type of mask image (short, binary, ubyte).
ActionPaintToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Constructor for the dynamic instantiation and execution of the PaintToMask script action.
ActionPaintToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Constructor used to record the PaintToMask script action line.
ActionPaintToVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a VOI based on the paint mask of an image.
ActionPaintToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: Constructor for the dynamic instantiation and execution of the PaintToVOI script action.
ActionPaintToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: Constructor used to record the PaintToVOI script action line.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Routine to catch action events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.CoordinateViewListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Calls various methods depending on the action used by the advanced calculator.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.file.FileJP2
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin: Do super.actionPerformed().
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: When the OK button is pressed, sets variables and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Responds to row button, column button, OK button, cancel button, and borderB button for color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.OkBorderListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Performs some error checking, then closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Catches action events: Okay, Cancel, Help and ChooseColor.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.UpdateTextAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Closes dialog box when the OK button is pressed and does the routine.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.HelpAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.OKAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Handle action events from the GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Handles events generated by the user interface, and takes appropriate action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Performs the following actions based on the command:
OK - uses the "current rectangle" set either by a listener of a glass pane (region mode) or by the window listener (window mode) Cancel - cleans up and disposes the dialog Region - sets all the glass panes visible to enable drawing on top of objects without selecting them Window - sets the glass panes invisible; then when a window is selected, the listener will save that rectangle.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: Handles the action events (called from script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: Sets parameters in ViewJComponentEditImage when Apply is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: a button has been clicked!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Calls run on the algorithm from the script parser.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Handles the IGNORE button possibility of the ActionEvent, otherwise passes control to the super event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for catching actions (button/script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The actionPerformed method
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: closes the dialog when the user clicks close.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: closes the dialog when the user clicks close.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: Sets the appropriate file filter when the "OK" button is pressed; otherwise disposes of the dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Processes button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Tests if entered intensity is within bounds and saves it.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBgListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBorderListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Performs a directed action of the delete button or listB buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLivewire: Sets the selection based on which radio button is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: a button has been clicked!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask3D4D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Closes Dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Reads event from one of the buttons to perform that buttons action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Processes the events from this dialog's buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNColors: Tests then sets the number of colors when the "OK" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: actionPerformed - closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Sets opacity once close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrder: Disposes of dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay: performed an action!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: the usual stuff.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Sets parameters in PaintGrowListener when Apply is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents: Sets opacity once close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Handle events from the dialog's buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.UpdateYSpaceAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Only perform the save LUT action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: Main event handler for MIPAV scripting tool.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Closes dialog box when the OK button is pressed and sets the information, doing error checking for every tag.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Closes dialog box when the OK button is pressed and sets the information.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Closes dialog box when the OK button is pressed and sets the information; when multi checkbox is selected or deselected, enables or disables appropriate labels and text fields; and disposes on cancel.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Reacts to the following actions:
Open - asks the user to choose a script file and dumps the contents to the text area
Save - saves the script to a file
Exit - calls windowClosing
Pause - pauses or resumes the script recording by setting isRecording appropriately
Edit - makes the text area editable or uneditable.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: If the user hits the "OK" button, checks to make sure he or she entered valid data.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Sets smoothing varaibles when "OK" is pressed; enables the volumeText box when the limitCheckBox is pressed, disposes dialog when "Cancel" is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for catching actions (button/script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod.ThresholdChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ProcessChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Calls transform methods to transform image if "Apply" is pressed; if "Cancel" is pressed, disposes.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrim: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Closes dialog box when the OK button is pressed and sets the image type and suffix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions.StatisticsOptionsActionListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Applies changes to VOI when "Apply" is pressed; closes when "Cancel" is pressed; and calculates statistics and outputs them to the message frame when "Calculate" is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom: Closes dialog box when the OK button is pressed and sets zoom.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: actionPerformed - JButton events:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: When state changes in some elements of the panel, the panel must make display changes; these changes are registered here.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.ExcluderOptionsActionListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Performs the following actions based on the command:
OK - Initializes pertinent fields, checking that all fields are filled out correctly, before sending the information to be processed for an email Cancel - cleans up and disposes the dialog Other - sends event to secondary method that looks for combobox events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAction
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Catches action events: Okay, Cancel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JFrameHistogram
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelChecklist: Closes dialog box when the OK button is pressed and does the routine.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelFileSelection: Responds to ActionEvents, such as the "Browse" button being clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelListController: responds to the button presses.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelTreeController: responds to the button presses.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.MipavUtil.ActionAdapter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Invoke the action event accroding to the comamnd passed in.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener: Unchanged.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Action performed method required when extending JPanelRendererBase.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: actionPerformed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Performs various actions depending on which event triggered this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: Perform action for okButton and cancelButton.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The override necessary to be an ActionListener.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener: Do nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Executes the following actions depending on what called this method:
Fly - changes the view platform to fly mode, so that the left mouse button is zoom, the right mouse button is translate, and the middle mouse button is pitch and roll. Standard - changes the view platform back to the standard, with the left mouse button grabbing the object and rotating it and the left mouse button with the alt mask doing a zoom. Reset - resets the view to what it was when the user called up this dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Performs various actions depending on which event triggered this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: Perform action for okButton and cancelButton.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Calls various methods depending on the action: Load in menu - calls a file chooser and loads the quad surface Save in menu - calls a file chooser and saves the quad surface Exit in menu - exits this frame View in menu - opens view dialog Mouse in menu - opens mouse recorder dialog Line checkbox in menu - toggles polygon mode between fill and line Visible checkbox on panel - toggles image on and off
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Action perform event function that handle all the commands in the probe panel.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener: Unchanged.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Handler for action events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Action performed method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.SceneState: Stub method for classes that extend this Object.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener: Do nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.OkColorListener: Sets the button color to the chosen color and changes the color of the fiber bundle.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: ActionListener event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The override necessary to be an ActionListener.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Dialog local handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Action performed handler for this dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: ActionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Dialog local handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Just handle GUI button clicks event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Just handle GUI button clicks event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Stops the thread, and disposes the progress bar.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewControlsImage: Action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Method to handle action events generated by the main UI when the current frame is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: Handles action events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Takes the action commands and paints if the apply button is pressed, closes if the close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.bColorListener: Resets the background color based on the user's choice.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.ColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.OkColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Handler for action events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessage: If "Save", saves text to file; if "Clear", clears appropriate text area; if "Copy", copies text to clipboard; if "Cut", removes the text and copies it to the clipboard; and if "Select", selects all text in text area.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Listen for events from the MIP frame GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage.OkColorListener: Pick up the selected color and call method to change the color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.OkColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Will execute the uninstall action
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar: Closes this progress bar when the cancel button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
ActionSaveAllVOIs - Class in gov.nih.mipav.model.scripting.actions: A script action which saves all the VOIs in an image to disk.
ActionSaveAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor for the dynamic instantiation and execution of the SaveAllVOIs script action.
ActionSaveAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor used to record the SaveAllVOIs script action line.
ActionSaveAllVOIs(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor used to record the SaveAllVOIs script action line.
ActionSaveBase - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Constructor for the dynamic instantiation and execution of the script action.
ActionSaveBase(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Constructor used to record the script action line.
ActionSaveImage - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage: Constructor for the dynamic instantiation and execution of the SaveImage script action.
ActionSaveImage(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage: Constructor used to record the script action line.
ActionSaveImageAs - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveImageAs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: Constructor for the dynamic instantiation and execution of the SaveImage script action.
ActionSaveImageAs(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: Constructor used to record the script action line.
ActionSaveTab - Class in gov.nih.mipav.model.scripting.actions: A script action which records saves the text contained in one of the output frame's tabs.
ActionSaveTab() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab: Constructor for the dynamic instantiation and execution of the SaveTab script action.
ActionSaveTab(String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab: Constructor used to record the SaveTab script action line.
ActionSaveVOIIntensities - Class in gov.nih.mipav.model.scripting.actions: A script action which saves all the VOI intensities in an image to disk.
ActionSaveVOIIntensities() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor for the dynamic instantiation and execution of the SaveVOIIntensities script action.
ActionSaveVOIIntensities(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor used to record the SaveVOIIntensities script action line.
ActionSaveVOIIntensities(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor used to record the SaveVOIIntensities script action line.
ActionSelectAllVOIs - Class in gov.nih.mipav.model.scripting.actions
ActionSelectAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs: Constructor for the dynamic instantiation and execution of the SelectAllVOIs script action.
ActionSelectAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs: Constructor used to record the SelectAllVOIs script action line.
ActionStartMipav - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the starting of MIPAV
ActionStartMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStartMipav
ActionStopMipav - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the closing of MIPAV
ActionStopMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStopMipav
ActionVOIToMask - Class in gov.nih.mipav.model.scripting.actions: A script action which converts all VOIs within an image to some type of mask image (short, binary, ubyte).
ActionVOIToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Constructor for the dynamic instantiation and execution of the VOIToMask script action.
ActionVOIToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Constructor used to record the VOIToMask script action line.
activate() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
activateStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
active - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta
active - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
active - Variable in class gov.nih.mipav.model.structures.VOI
active - Variable in class gov.nih.mipav.model.structures.VOIBase: Flag indicating whether or not a VOI is active (selected).
active - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
active - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
active(int, double[], double[], int[], double[], int[], int, boolean[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
ACTIVE_IMAGE_COLOR - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage: Color used in the rectangle indicating the image is active.
active_set - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
active_set - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
active_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
active_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
activeBurn(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Active the current burning point type.
activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
activeColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
activeContoursAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
activeDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
activeFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Active frame
activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: The image that contains the VOI text.
activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: The currently selected image
activeImageColorBorderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: border size for active image color
activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
activeLightBulbIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Record the current active index of light bulb, which is being picked.
activeProbe(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Active the corresponding probe with the given probe type.
activeReceivers - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
activeSliceButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
activeTree - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Livewire calculations:
activeTree - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
ActiveTree() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Sets root node to null.
ActiveTree() - Constructor for class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Sets root node to null.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: The VOI on which to perform the calculations.
activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation only for the active volume
activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
actOnPath - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: for the files selected ...
actual_number_of_colors - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2
actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
actualDateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 18.
actualHistory - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
actualThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
actualThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualThresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualThresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
aCutoff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
AD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ad1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ADAMS_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
adaptiveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
adaptiveTruncatedVectorMedian(float, float, float, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Only used with color images in vector filtering.
adaptiveVectorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
adbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
adcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
ADCImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
add(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
add(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: New edges that occur because of modified triangles being added to the mesh must be added to the heap and the heap must be updated.
add(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit: Adds the parameter i to the stored value.
add(int[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: Add the following information for a "branch" path of the graph: an array of key values for each point along the path, an array of 3D coordinates assoicated with each point, and an array of distances each point is from its nearest boundary.
add(int, float) - Method in class gov.nih.mipav.model.structures.HQueue: add - adds a value to the queue.
add(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Add a branch to the already existing branch at the specified distance along the branch.
add(int, VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
add(MetadataExtractor.Knot) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath: Appends a knot (set of 3 points) into the list
add(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial
add(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
add(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
add(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from ViewJComponentTriImage to add the image-align protractor.
add(VOIBase, int, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add a point to the voi contour
add(VOIBase, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add a new point to the end of the current contour.
add(VOIPoint) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice: Add a new VOIPoint to this polyline.
add(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is (this + y).
add(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Plus operator.
add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
add(CVisRGBA, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
add(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
add(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
add(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
add(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
add(Component) - Method in class gov.nih.mipav.view.JScrollMenu
add(Component, int) - Method in class gov.nih.mipav.view.JScrollMenu
add(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewControlsImage: Adds a component to the toolbar panel using the given gridbag constraints.
add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Adds a new mouse event to the end of the mouseEvents vector.
add(Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Adds a new mouse event to the end of the mouseEvents vector.
add(Object, Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Adds a new mouse event to the end of the mouseEvents vector.
add(Object, Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Adds a new mouse event to the end of the mouseEvents vector.
add(HashMap<String, String>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
add(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel.
add(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel.
add(JMenuItem) - Method in class gov.nih.mipav.view.JScrollMenu
add(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
add(Polyline, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
Add(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Add(NVectorF, float, NVectorF, float, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Add(NVectorF, float, NVectorF, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Add(VectorD, double, VectorD, double, VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Add(VectorD, double, VectorD, VectorD) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Add(VectorF, float, VectorF, float, VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
Add(VectorF, float, VectorF, VectorF) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
ADD - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
ADD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: operation constants
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: add
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
add_edge_to_aet(GenericPolygonClipper.edge_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_event(TURN_REP, TURN_REP, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
add_gaussian_noise(double[], double[], double[], double, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
add_intersection(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_into(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add_into(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
add_into(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
add_into(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
add_into(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
add_into(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add_into(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
add_into(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
add_left(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_local_min(GenericPolygonClipper.polygon_node[], GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_right(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_st_edge(GenericPolygonClipper.st_node[], GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_SubSigs(AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ADD_TAG - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For adding a top level dicom tag
ADD_TAG_SEQ - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For adding a dicom tag contained within a sequence
add_to_sbtree(int[], GenericPolygonClipper.sb_tree[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add128 - Variable in class gov.nih.mipav.model.file.FileZVI
add3DMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
add3DVOI(String, SurfaceState, VolumeSurface) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
addABCD(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
addAbstractSyntax(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds proposed abstract syntax to hash table.
addActionListener(ActionListener) - Method in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
addActiveImageControl() - Method in class gov.nih.mipav.view.ViewControlsImage: Displays the panel which controls which image is the "active image" displayed when imageB is available.
addAllSupportedAbstractSyntaxes() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds all proposed abstract syntaxes to hash table.
addAloneMenu(JMenuBar) - Method in class gov.nih.mipav.view.ViewUserInterface: Adds a standalone menu to the user interface.
addAmbient(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to ambient lighting.
addAnimationLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationVOIs(VOIVector, JPanelAnnotationAnimation) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addAnnotateButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: button for adding annotation points for the path planning
addAnnotation(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Add an annotation to the latticeModel.
addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Add an annotation to the latticeModel.
addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Add an annotation to the annotation list.
addAnnotation(VOIWormAnnotation, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Adds an annotation listener to the latticeModel.
addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds an annotation listener.
addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: When left mouse press with the control key down on the bottom three planar view, add the annotation point
addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Add the annotation point
addAnnotations(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Called when new annotations are loaded from file, replaces current annotations.
addAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Creates the anonymization button and adds it to the button panel.
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Creates the anonymization button and adds it to the button panel.
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Creates the anonymization button and adds it to the button panel.
addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
addAttValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Sets the value of the attribute element; used for setting attribute of variables.
AddBackSlash(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Ensures that a string is terminated with a backslash.
addBlur(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Combines the randomized-voxel blurred image with the output image.
addBorder(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
addBorder3D(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: This method adds a border to the input data so that borders can be dealt with easily.
addBoxSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Adds the slice frame for slice of the given orientation to the scene graph.
addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds a BranchGroup to the display.
addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender -- adds a BranchGroup to the main Display.
addBranchGroup(Node, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Creates a BranchGroup containing the input Node and Transform3D, and returns the BranchGroup.
addBrowseFilesButton() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: adds the "Browse Files ...." button to the right of the panel.
addBurn(BurnAttributes) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Add a burn to the treatment list.
addButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
addButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
addButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Selection buttons
addButton(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Creating buttons
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
addCellEditorListener(CellEditorListener) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
addChannelCheckboxListener(ItemListener) - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Add an ItemListener to all of the color channel checkboxes.
addChannelComponent(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
addChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
addCleanupOnWindowClosingListener(Window) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Adds a WindowListener to the specified window that takes care of cleanup (GL resources) when the window is about to close.
addClipSlice() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach clipping plane branch group.
addClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach arbitrary clip slice bounding frame.
addClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach static clip slice bounding frame.
addClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach static inverse clip slice bounding frame.
addClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach X clip slice bounding frame.
addClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach X Invative clip slice bounding frame.
addClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Y clip slice bounding frame.
addClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Y Invative clip slice bounding frame.
addClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Z clip slice bounding frame.
addClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Z Invative clip slice bounding frame.
addCollectionOfRunnable(Collection<Runnable>, Collection<String>) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Secondary method for registering algorithms to the multi-bar.
addCommentLine(String) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Appends a comment line to the current script (if one is being recorded).
AddComplexRootPair(Vector<Double>, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addConnections(Backpropagation.Neuron[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
addConnections(ArrayList<Backpropagation.Neuron>) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Method that adds components to the control paenl.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Method that adds components to the control paenl.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Adds a component to the control panel.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Adds a component to the control panel.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Helper method that adds components to the control panel for the grid bag layout.
addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Creates the convert button and adds it to the button panel.
addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Creates the convert button and adds it to the button panel.
addCoordinateChangeListener(CoordinateChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Add someone who wants to be notified about crosshair coordinate changes.
addCoordinateViewListener(ContourPlot.CoordinateViewListener) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer: Adds a ContourPlot.CoordinateViewListener to this renderer which will be notified whenever the coordinate view changes (i.e. when ContourPlot.CoordSysRenderer.setCoordinateView(double, double, double, double) is called)
addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Attach cubic control branch group.
addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Attach cubic control branch group.
addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewControlsImage
addDataset(String, Integer, Boolean) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addDatasetRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
addDataToHash(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.famsPoint, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
addDataToRes(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_res_cont, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
addDDTypeHash(int, int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
addDetector(String, String, String, Float, Float, Float, Integer, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
AddDiagonalAndInvert(double[], int, CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
addDiffuse(SoftwareMaterial, SoftwareVertexProperty, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to diffuse lighting.
addDimElem(String, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new dimension element with the specified parameters into the dimension array at the gievn index.
addDirectory(T) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Adds a directory to this metadata collection.
addDirToLibPath(String) - Static method in class gov.nih.mipav.util.NativeLibraryLoader
addedCurve(VOIEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIListener: handles an VOIEvent as a selection change.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addEdge(float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Add the edge to the EdgeList, check to make sure that edge has not already been added.
addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Add the edge to the EdgeList, check to make sure that edge has not already been added.
AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddEdge(Vertex, Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddEdgeIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
AddEdges(double[], double, Edge[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
addedVOI - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
addedVOI(VOIVectorEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIVectorListener: handles an VOIEvent as a selection change.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addElement(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Adds a point to the curve.
addElement(int) - Method in class gov.nih.mipav.model.structures.IntVector: Pushes a new value onto the array.
addElement(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Adds a point to the curve.
addElement(ProvenanceEntry) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Catches the Vector's addElement for listener notifaction
addElement(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
addElement(VOI) - Method in class gov.nih.mipav.view.ViewVOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
addElement(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
addElement(VOIBase, boolean) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
AddElementToGroup(T, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
addEntry(Class, Class...) - Method in class gov.nih.mipav.plugins.ManifestFile: Adds an entry to the manifest file, does in fact write to the file.
addError(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Registers an error message with this directory.
addError(String, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
AddEvent(String) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
addExifTagNames(HashMap<Integer, String>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase
addExperiment(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addExperimenter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addExtension(String) - Method in class gov.nih.mipav.model.file.FileTypeInfo: Add an extension to the file type's list of supported suffixes.
addExtension(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: Add an extension to the list of possible extensions valid for this filter.
addExtensionAssociation(String, int) - Static method in class gov.nih.mipav.model.file.FileTypeTable
AddExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the amount shape extents added (warning: shape extents will be remove in later versions).
addFace() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
addFace(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
addFiles(File, Vector<String>) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
addFilesToVector(String, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Recursively adds DICOM filenames and directory paths to a Vector.
addFilter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addFindResultToList(DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Utility function to collect the results of a DICOM query.
addFlightPath() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender to display the flythru flight path from the flythruRender.
addFlightPath(Shape3D, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds the flythru path shape and current view position to the display.
addFrames(libdt.PatchExtractor, libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Add a new function point to the current LUT transfer function.
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: /
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Add a new function point to the current LUT transfer function.
addFunctionToLUT() - Method in class gov.nih.mipav.model.file.FileImageXML: Adds the LUT functions collected within the functionVector.
addFunctionToRGB() - Method in class gov.nih.mipav.model.file.FileImageXML: Adds the ModelRGB functions contained within the functionVector.
addGattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new global attribute array element with the specified parameters into the global attribute array at the given index.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Add a new geodesic component to the TriMesh surface display.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a geodesic element to the surface display.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add a new geodesic component to the surface.
AddGeodesic(Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Add a new geodesic component to the surface.
addGiniImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
addGM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Add the gradient magnitude histogram to the opacity control panel.
addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Add the gradient magnitude histogram to the opacity control panel.
addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
addGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Add the gradient magnitude hitogram to the opacity control panel.
AddGroundtruth(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Add ground truth from give image and voi
AddGroundtruths(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Add ground truth
addGroup(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: DOCUMENT ME!
addGuideLine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Draw the red guiding line along the start and end point.
addImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Add model image into the capture frame.
addImage(String, String, String, Integer, Integer, Integer, Integer, Integer, Float, Float, Float, Float, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: browse button
addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: browse button
addImageDisplayListener(ViewImageUpdateInterface) - Method in class gov.nih.mipav.model.structures.ModelImage: Add a listener to this class so that notifyListener can be used to notify all listeners to update the display of the image.
addImageRegistryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ImageRegistryMonitor: add a memory change listener.
addImpl(Component, Object, int) - Method in class gov.nih.mipav.view.JScrollPopupMenu
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
addInclude(Integer, URI, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: need these functions to create the classes within..
addInputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Adds an image register as an input-image
addInsertionPoint(Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds a point to the lattice.
addInstrument(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addIntensityLock(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Adds an Integer object to the intensityLockVector.
AddInterior(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Add articifial interior points to the shape by making a Delaunay triangulation and adding the centroid of each triangle.
addItem(int, float, boolean, Point3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Create a new annotation item with the specified information and add the item to the end of the list.
addItem(int, float, boolean, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Create a new annotation item with the specified information and add the item to the end of the list.
addItem(FileDicomSQItem) - Method in class gov.nih.mipav.model.file.FileDicomSQ: Add an item to the sequence vector.
addItem(FlyPathAnnotateList.Item) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Add the specified annotation item to the end of the list.
addItem(FlyPathAnnotateList_WM.Item) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Add the specified annotation item to the end of the list.
addItemToRender(ContourPlot.Renderable) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer: Adds the specified item to the corresponding renderer.
addItemToRender(T) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer: Adds an item to this renderer's ContourPlot.GenericRenderer.itemsToRender list.
additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: label for browsing for additional images
additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: label for browsing for additional images
additionalImagesList - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: list of any additional images browsed to
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: additional images to concat...the ones you add later on
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: additional images to concat...the ones you add later on
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: additional images to concat...the ones you add later on
additionalPluginDirList - Static variable in class gov.nih.mipav.plugins.PluginUtil
additionalSets - Variable in class gov.nih.mipav.model.file.FileImageXML: A listing of all the additional PSets to be written into the saved file.
additionalTagsList - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
ADDITIVE - Static variable in class gov.nih.mipav.model.structures.VOI: Mask as ones - i.e. put ones to indicate VOI location
addJarContext(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
addJustVerificationAbstractSyntax() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds just the verification syntax for DICOM verification process.
addKey(String, String, String) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
addKeysToAllowList(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
addLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Creating labels
addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addLayoutComponent(String, Component) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
addLeadingZeros(int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads zeros to a number.
addLeadingZeros(String, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads zeros to a string representation of a number.
addLeftRightMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addLeftRightMarker(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds a new left/right marker to the worm image.
addLightSource(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addLightSourceRef(Integer, Integer, String, Float, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Adds a scriptable action to an image's data provenance
addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Add a line to the current script by requesting a script action to generate its script line.
addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
addLineArray(LineArray, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called from the JDialogDTIInput.
addLineLabel(double, int, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineLabel(double, int, String) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineLabel(double, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineSegment(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
addList() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
addListener - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
addListener(AlgorithmInterface) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Add a listener to this class so that when when the algorithm has completed processing it can use notifyListener to notify all listeners that the algorithm has completed.
addListeners() - Method in class gov.nih.mipav.view.ViewFileChooserBase: Adds all listeners required by this accessory.
addLUValue(String) - Method in class gov.nih.mipav.model.file.FileImageXML: Adds LUValue for either LUT or modelRGB.
addMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Adds a matrix to the map. matrices will be keyed by their type and sequential numbering
addMemoryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: add a memory change listener.
addMenuDragListener(Component, MenuDragMouseListener) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Attaches a MenuDragMouseListener to comp and all of its sub-components (if comp is a JMenu/JMenuItem.
addMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: ReplaceMesh is used by the Geodesic when a mesh is cut.
addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Add new mesh to the volume rendering.
addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called when a mesh is changed by the Geodesic class, when a mesh is cut along the geodesic curve it may be divided into two or more meshes.
addNeurite(VOI, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Generates a natural spline curve to fit the input set of annotation points to model a neurite.
addNeurite(String, String[], ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addNode - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: When true the dialog creates a new node, otherwise it is used to edit the Notes.
addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
addNode(int, int, AlgorithmNetworkSnake.AnchorPosition) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
addNode(String, String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Add a new node under the picked node.
addNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a new display node to the volume/surface display list.
AddNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Add a new scene-graph node to the display list.
addNodeDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
addNormals(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
addNoSplitVariable(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
addObjective(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addObserver(Observer) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
addObserver(Observer) - Method in interface gov.nih.mipav.model.util.Observable: Adds an observer to the set of observers for this object, provided that it is not the same as some observer already in the set.
ADDON - Variable in class gov.nih.mipav.model.algorithms.CVODES
addon_message_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
addOnNextLine(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel on a new line (vertically).
addOnNextLine(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel on a new line (vertically).
addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Helper method that adds components to the control panel for the grid bag layout.
addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Helper method that adds components to the control panel for the grid bag layout.
addOTF(Integer, Integer, Integer, String, Boolean, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
addOutputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
addPadding(ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Pad an image by copying the first and last slices 2 more times so that the laplacian algorithm behaves well in edge conditions.
addParam - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: menu item for adding parameter.
addParameter(String) - Method in class gov.nih.mipav.model.file.XMLPSet: Adds a new parameter to the set.
AddParameter(Matrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
AddParameterBlock(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddParameterBlock(double[], int, CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddParameterBlock(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
addParameterData(String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Adds a new row of parameter data to the display's table.
addParentTag(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
addPath(T, byte[]...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie: Store the given value at the specified path.
AddPath(CAAMShape, CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Adds a path to the shape.
addPixelLine(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
addPlate(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addPluginDirectory(String) - Static method in class gov.nih.mipav.plugins.PluginUtil
addPluginToMenu(Class<?>, String, String, JMenu, ActionListener, String) - Method in class gov.nih.mipav.view.ViewUserInterface
addPoint(float, float) - Method in class gov.nih.mipav.model.structures.TransferFunction: Adds a point to the function at the end.
addPoint(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
addPoint(int, int) - Method in class gov.nih.mipav.model.structures.PointStack: Adds a point to the arrays.
addPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
addPoint(Vector2f) - Method in class gov.nih.mipav.model.structures.TransferFunction: Adds a point to the function at the end.
addPointCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Standard cursor: add a point (hand).
addPointCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
addPointFlag - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
addPointFlag - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
addPointToFunction(String) - Method in class gov.nih.mipav.model.file.FileImageXML: Adds a point to the function associated with the LUT or modelRGB.
addPointToggleButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Toggle buttons for voi/points
addPolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add polyline to the render.
addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Add a polyline to the display.
addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a polyline to the VolumeDTI display.
addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
addPopup(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Link the popup menu to the input voi so the popup menu will operate on the input voi.
addPreambleAndGroupTwoTags(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Builds buffer of DICOM part 10 preamble and require Part 10 group 2 tags.
addPresentationContext(DICOM_PresentationContext) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Adds a presentation object to a vector list of presentation contexts.
addPresentationContextAccept(DICOM_PresentationContextAccept) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Adds the presentation context to the accepted context list.
addProcessLoggingNotifier(JTextArea) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: a list of JTextAreas to be notified when a change in the process/output log is made. this permits almost-real-time updates to output devices this method adds the selected list of JTextAreas to receieve the output logs.
addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Adds the ProgressChangeListener to this FileBase object.
addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.file.FileBase: Adds the ProgressChangeListener to this FileBase object.
addProject(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addProjectRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset: DOCUMENT ME!
addProvenanceChangeListener(ProvenanceChangeListener) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Adds a listener (JDialogDataProvenance) to receive notifications
addProvenanceData(ProvenanceEntry) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Adds an entry to the Model (shows on table)
addPset(String, XMLPSet) - Method in class gov.nih.mipav.model.file.FileInfoImageXML
addQE(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
AddRandomBlock(int, int, int, int, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
addRawOptionsToParameters(ParameterTable, FileInfoBase) - Static method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Adds parameters to a table, describing a raw image.
AddRealRoot(Vector<Double>, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
addRegion(int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Panel to push/pull VOIs from full list to selectable list.
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Panel to push/pull VOIs from full list to selectable list.
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel to push/pull VOIs from full list to selectable list.
addReplaceMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Add as New/Replace button (depending on selected matrix type).
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
address - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AddResult(CAAMShape, CAAMShape, double, CAAMOptRes) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Adds a new result to the back.
AddResults(CAAMEvaluationResults) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Adds a new set of results to the back.
addROI(Integer, Integer, Integer, Integer, Integer, Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: DOCUMENT ME!
addRow(ViewTableModel, Object[], boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Determines whether the given row should be shown.
addRunnable(Runnable, String, int, int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Basic method for registering an algorithm to the multi-bar.
addSaveOptionsToParameters(ParameterTable, FileWriteOptions, int[]) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Add the save options needed to record the saving of an image to a parameter table.
addScaled(Polynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
addScaled(PPolynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
AddScaled(NVectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
AddScaled(Polynomial, double, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(Polynomial, double, Polynomial, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(Polynomial, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(VectorD, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
AddScaled(VectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
addScannerLabels(String, Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: DOCUMENT ME!
addSchwarzChristoffelLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph
addScreen(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addScreenRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate: DOCUMENT ME!
addScriptActionLocation(String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Adds a new package where we should look for scriptable actions.
addScriptRecordingListener(ScriptRecordingListener) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Adds a class to the recorder's list of listeners.
addScriptVOI(ScriptVOI) - Method in class gov.nih.mipav.view.dialogs.ScriptImage
addScrollList(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
addSegment(byte, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Adds segment bytes to the collection.
addSegment(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Adds a new line segment to this object.
addSegment(Point2D, Point2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Adds a new line segment to this object.
addSelectionPaths(TreePath[]) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
addSeparator() - Method in class gov.nih.mipav.view.JScrollMenu
addSeriesData(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: AddSeriesData This method populates the series table based upon the studyID.
addSet - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for adding sets.
addShape(Object, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
AddShapeExtends(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Adds an extra outer path on each outer path in the distance of 'nPixels' along the point normal.
addShortcut - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: add shortcut button.
addShortcut(String) - Static method in class gov.nih.mipav.view.Preferences: Adds a new shortcut to the hashtable. if there is already a command predefined for the keystroke set from setShortcut(), it will be removed then replaced with the new command.
addShortcut(String, KeyStroke) - Static method in class gov.nih.mipav.view.Preferences: Adds a new shortcut to the hashtable with a given keystroke. if there is already a command predefined for the keystroke set from setShortcut(), it will be removed then replaced with the new command.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Adds the VolumeSlices object to the display list for rendering.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Adds the VolumeSlices object to the display list for rendering.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Pass the VolumeSlices from the Volume Renderer to the PlaneRender objects.
addSnpData(char[], int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
addSortButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: DOCUMENT ME!
addSpecular(SoftwareMaterial, SoftwareVertexProperty, Vector3f, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to specular lighting.
addSphere(Vector3f, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addSphereVOIs(VOI) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameImage
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Add a curve to the list.
addStatusPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Method that adds components to the control paenl.
addStringToTable(byte[]) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Add a new string to the string table.
addStringToTable(byte[], byte) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Add a new string to the string table.
addStudyData(FileInfoDicom) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Adds the study data to the table.
addsub(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
addsub(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.ReminderThread: DOCUMENT ME!
addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.TimeoutThread: DOCUMENT ME!
addSubTree(Graph, Node, Node, Component[], int) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Function recursively creates a tree structure based on an array of menu components.
addSurface - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for adding surfaces.
addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Add surface to the volume image.
addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Sets up the surface by setting the color of the material to black, setting the polygon to no cull-face and a fill mode, and allowing intersections in case we want picking ability.
addSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add surface to the volume image.
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add surfaces to the display list.
addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add TriMesh surfaces to the Volume Renderer.
addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add surfaces to the display list.
addSurface(SurfaceState, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addSurface(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Adds a surface path to the image's surface list.
addSurface(String, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay: Add a surface to the table.
addSurface(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Adding surface to the 3D texuture volume.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Add a surface to the display list.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Add new mesh to the volume rendering.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSurface(TriMesh, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Add the fly-through surface.
addSurfaceMask(int, BitSet, ColorRGBA[], ColorRGBA) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Adds a surface mask to this image.
addSurfaces(SurfaceAttributes[], boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds an array of surfaces described by their SurfaceAttributes to the scene graph.
addSurfaces(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adding the surface with specific directory and file name.
addSurfaces(TriMesh[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add surfaces to the Volume Tri-Planar renderer.
addTab(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Adds a tab to the MessageFrame tabbed pane with the given Title.
addTabbedPane() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Called when the volumePositionFrame closes, the volumePositionPanel is again displayed in the window:.
addToAvailableImageList(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addToAvailableImageList(String, String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addToEnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
addToFile(Class, ArrayList<Class>) - Method in class gov.nih.mipav.plugins.ManifestFile
addToList(Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Add a parameter to the end of the list.
addToModelClip(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Add a new branch group to model clip for clipping.
addToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Add surface volume renderer control buttons.
addToPane() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: Adds what the container just built (based on the given inputs) to the component barPanel.
addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Adds a component to the top panel.
addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Adds a component to the top panel.
addToTempDirList(String) - Static method in class gov.nih.mipav.view.ViewUserInterface
addToTerminalNodes(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
addTract() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Updates the tract list user-interface.
addTract(VOIContour, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Adds a fiber bundle tract to the GPUVolumeRender and JPanelSurface.
addTract(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add tract into the DTI display
addTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Adds a new transfer syntax to the list (ie. vector)
addTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
addTriangle(delaunay.Site, delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
AddTriangleIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangleIndices(float[], float, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangleIndices(int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(double[], double, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(float[], float, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(CoredMeshData, Vector<CoredPointIndex>[], Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
AddTriangles(CoredMeshData, Vector<CoredPointIndex>, Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
addValue - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 112 - value to add to pixels.
addVarElem(String, int, int[], int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new variable element with the specified paramenters into the array at the given index.
addVattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Adds an attribute element to the variable attribute array.
addVattValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Sets the value of a variable attribute element.
addVectorListener(VOIVectorListener) - Method in class gov.nih.mipav.model.structures.VOIVector: adds the update listener.
addVertex(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddVertex(Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
addVOI(ModelImage, VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addVOI(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Adds voi to the voi vector
addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Add a new VOIBase.
addVOI(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Adds a voi path to the image's VOI list.
addVOI(String, String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addVOIListener(VOIListener) - Method in class gov.nih.mipav.model.structures.VOI: adds the update listener.
addVOIManager(ModelImage, ModelImage, Component, ScreenCoordinateListener, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Adds a point to the current voi.
addVOIs(VOIVector) - Method in class gov.nih.mipav.model.structures.ModelImage: adds VOI vector for with new VOIs.
addVOIS(VOIVector, Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addVOIsToCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
addVOIUpdateListener(UpdateVOISelectionListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Adds a UpdateVOISelectionListener.
addVOIUpdateListener(UpdateVOISelectionListener) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Add a UpdateVOISelectionListener so it will receive VOI selection updates.
addVolumeVOI(VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addWhiteListedKeys(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Deprecated.
JPanelAnonymizePanelTags#addKeysToAllowList(ArrayList,ArrayList)
aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.DiscretInteg
ADJ_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Use adjacency model to perform triangle consistency.
adj_ranks - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
adjacencies - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
AdjacencyCountFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AdjacencyCountFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
AdjacencySetFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AdjacencySetFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
adjacent - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
ADJACENT_BACK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Copy adjacent slice.
ADJACENT_DOWN - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Copy adjacent slice.
ADJACENT_DOWN_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
ADJACENT_NEXT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Copy adjacent slice.
ADJACENT_UP - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Copy adjacent slice.
ADJACENT_UP_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjacentDown - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
adjacentUp - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjCfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjE(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjGKN(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: adjusted image.
adjInvF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: number of VOIs for adjustable slice
adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: adjusted marker type.
adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
adjPPFT(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjRadon(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjU(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjust_amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
adjustBins(int[], int[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustExp - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: adjust exp *
adjustExp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: adjust exp *
adjustExp - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: adjust exp *
adjustExpPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
adjustExpPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
adjustExpSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
adjustExpSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
adjustExpTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
adjustExpTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
adjustGradientBins(VabraVolumeCollection, double, double, double, int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ColorWheel: adjust green intensity
adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: adjust green intensity
adjustmentValueChanged(AdjustmentEvent) - Method in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
adjustOpacityFor000Color() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: >>>>>>> .r533 The purpose of this method is to examine both LUTs to determine if they are zero-based, that is, if they map values of zero to the color R=0, G=0, B=0.
adjustOrigBins(int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustPvalues(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
adjustScrollbars(int, int) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
adjustScrollbars(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This method adjust the scrollbars to area where user clicked when doing individual frame zooming in and out.
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Adjust the translation of the transformation matrix by the sample pararmeter.
adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
Adobe_transform - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
AdobeJpegDescriptor(MetadataExtractor.AdobeJpegDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
AdobeJpegDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory
AdobeJpegReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
AdobeJpegReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest
adOpDialog - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
adOpString - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
adOpString - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Advanced function string.
adub - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
adv(int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER: Advance N-dimensional subscript
ADVANCED - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
advancedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Variables for Advanced Settings dialog.
advanceVOIUID() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Increments the VOI uid for internal tracking, used during both creation and loading of a new VOI
AdvancingFront - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
AdvancingFront(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
AdvancingFront.AdvancingTest - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
AdvancingTest(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest
advDecOptDialog - Variable in class gov.nih.mipav.model.file.FileJP2: The height of image
AE - gov.nih.mipav.model.file.FileDicomTagInfo.VR
aExp - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
afc(Vector<Integer>, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
afcmAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
affiliation - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Affiliation of investigator.
affine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
Affine() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Affine
AFFINE - gov.nih.mipav.model.algorithms.SIFT3D.tform_type
Affine_set_mat(SIFT3D.Mat_rm, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
affineTransform(double[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: The input 4x4 homogeneous matrix H is assumed to multiply vectors V as H*V where V = (x,y,z,1).
affineTransform(float[][], float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Rotation R is 3x3, translation T is 3x1, and scale S is 3x1.
AFInfo() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo
AFNI - Static variable in class gov.nih.mipav.model.file.FileUtility: AFNI file type. extension: .head, .brik
AFNI_ACPC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type ACPC.
AFNI_ORIG - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type Original.
AFNI_TLRC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type Talairach.
afniEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
afniGroup - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
afniGroupArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
AFNIOrigExtents - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNIOrigResolutions - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNITypeString - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNIViewType - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFPintoDFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
AFPintoDFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
AFPintoFRET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
AFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
AFTER - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Before/After index values for the two displayed spheres, canvases, and display panels:.
AFTER - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Before/After index values for the two displayed spheres, canvases, and display panels:.
afterExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
afterThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
afTimeC - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
agastDetector_5_8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
AgastDetector5_8 - Class in gov.nih.mipav.model.algorithms: agast5 - AGAST, an adaptive and generic corner detector based on the accelerated segment test for a 8 pixel mask Copyright (c) 2010, Elmar Mair All rights reserved.
AgastDetector5_8(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AgastDetector5_8
agcieAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGCIE: DOCUMENT ME!
Age() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
Age(int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
AgeTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AgeTest
AgglomerativeInformationBottleneck() - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
AgglomerativeInformationBottleneck(ModelImage, int, int, double[][], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
AgglomerativeInformationBottleneck.VlAIB - Class in gov.nih.mipav.model.algorithms: ------------------------------------------------------------------
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
AGGREGATED_CIRCLES_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE_RANDOM_ORIENTATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE_RANDOM_ORIENTATION_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
aggregatedCirclesDifferentSizesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseRandomOrientationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseRandomOrientationDifferentSizes - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
agvfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
Ah - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
aicAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
AICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AIF_conc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_diffPeak - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_enable - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_cv_est_parGV - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_gv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_parameters - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_weights - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nSlice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nSliceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nSliceText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nVoxelMax - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nVoxelMin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pArea - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pReg - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pTTP - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_recirculation - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI_x - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI_y - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_semiMajorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_semiMinorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_voxels - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIFslice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
Ain - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
aindaneAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
airPressure - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Airy function Ai.
AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Airy function Ai.
AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Airy function Bi.
AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Airy function Bi.
aki - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
akMVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of mesh points.
akNormal - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: normal vector arrayes.
akPVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of plane points.
akr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
akSVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of sphere points.
Al - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
Al - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
alertBackground(JTextField, boolean) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2: parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with ier[0] = 6.
alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with errorStatus = 6.
ALFA02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
ALFA12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alg - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: handle to BSE Algorithm *
alg - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: handle to the algorithm *
alg - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: handle to alg
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: handle to the algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: algorithm
alg - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: handle to the algorithm *
alg - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
alg - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
alg2D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
alg3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
ALGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
algCont - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List of containers that hold all the information to correctly draw each progress bar
algdiv(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
algList - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List containing which runnables are registered to this listener
algo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Use serialVersionUID for interoperability.
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Use serialVersionUID for interoperability.
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
algoAutoCorrelation - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
algoAutoCovariance - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
algoColorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
AlgoContainer(String, int, int) - Constructor for class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer
algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Algorithm that implement cost functions, either a AlgorithmCostFunctions or AlgorithmCostFunctions2D
algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Is either a AlgorithmCostFunction or a AlgorithmCostFunctions2D depending on images
algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
algoLocal - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
algoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
algoQuantify - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
algoRegVOILankmark - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
algoReplace - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
algorID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
algorithm - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
algorithm_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
Algorithm4DImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities
Algorithm4DImageCalculator() - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: constructor
Algorithm4DImageCalculator(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: constructor
AlgorithmActiveContoursWithoutEdges - Class in gov.nih.mipav.model.algorithms
AlgorithmActiveContoursWithoutEdges(ModelImage, ModelImage, int, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
AlgorithmAdaptiveKuwaharaFilter - Class in gov.nih.mipav.model.algorithms.filters: This algorithm is created from the description provided in the article: "Adaptive Kuwahara Filter" by Krzysztof Bartyzel, Published online July 6, 2015.
AlgorithmAdaptiveKuwaharaFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
AlgorithmAdaptiveKuwaharaFilter(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
AlgorithmAddMargins - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to add or remove margins around the image.
AlgorithmAddMargins(ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Add or remove margins from the srcImage.
AlgorithmAddMargins(ModelImage, ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Add or remove margins from the srcImage and store the results in the destImage.
AlgorithmAGCIE - Class in gov.nih.mipav.model.algorithms
AlgorithmAGCIE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE: Reference: An Adaptive Gamma Correction for Image Enhancement by Shanto Rahman, Md Mostafijur Rahman, M.
AlgorithmAGCIE(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
AlgorithmAGVF - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm deriviative.
AlgorithmAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Creates a new AlgorithmAGVF object.
AlgorithmAHE - Class in gov.nih.mipav.model.algorithms: algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmAHE(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE: Constructor for images in which changes are returned to the source image.
AlgorithmAHE(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmAHElocal - Class in gov.nih.mipav.model.algorithms: algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmAHElocal(ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Constructor for images in which changes are returned to the source image.
AlgorithmAHElocal(ModelImage, ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmAINDANE - Class in gov.nih.mipav.model.algorithms
AlgorithmAINDANE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
AlgorithmAINDANE(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
AlgorithmAnisotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters: This algorithm anisotropically diffuses an image.
AlgorithmAnisotropicDiffusion(ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates a new AlgorithmAnisotropicDiffusion object.
AlgorithmAnisotropicDiffusion(ModelImage, ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates a new AlgorithmAnisotropicDiffusion object.
AlgorithmAntigradient2 - Class in gov.nih.mipav.model.algorithms: This is a port of the files anitgradient2.m and antigradient2.c created by Gunnar Farneback in the Spatial domain toolbox at http://www.imt.liu.se/mi/Tools.
AlgorithmAntigradient2() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAnyTwoImagesSNR - Class in gov.nih.mipav.model.algorithms
AlgorithmAnyTwoImagesSNR(ModelImage, ModelImage, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: Creates a new AlgorithmAnyTwoImagesSNR object.
AlgorithmArcLength - Class in gov.nih.mipav.model.algorithms: This algorithm calculates the arc-length of a Bspline fit to user defined control points.
AlgorithmArcLength(float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Algorithm constructor.
AlgorithmArcLength(float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Algorithm constructor.
AlgorithmASM - Class in gov.nih.mipav.model.algorithms
AlgorithmASM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM
AlgorithmASM.AppData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.ASMData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.FileMATLAB - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.LandData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.Options - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.P - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.PData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.SData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.TData - Class in gov.nih.mipav.model.algorithms
AlgorithmAutoCorrelation - Class in gov.nih.mipav.model.algorithms: Reference: Digital Image Processing, Second Edition by Rafael C.
AlgorithmAutoCorrelation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Constructor for black and white image in which correlation coefficients are placed in a predetermined destination image.
AlgorithmAutoCorrelation(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Constructor for color image in which correlation coefficients are placed in predetermined destination images.
AlgorithmAutoCorrelation.FitCorrelationModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmAutoCovariance - Class in gov.nih.mipav.model.algorithms: let deli(x,y) = (i(x,y) - )/ where the angle brackets are used to denote a spatial average.
AlgorithmAutoCovariance(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Constructor for black and white image in which covariance coefficients are placed in a predetermined destination image.
AlgorithmAutoCovariance(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Constructor for color image in which covariance coefficients are placed in predetermined destination images.
AlgorithmAutoCovariance.FitCovarianceModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmAutoSeedWatershed - Class in gov.nih.mipav.model.algorithms: This is a port of the file AutoSeedWatershed.cpp which calls openCV written by Ravimal Bandara.
AlgorithmAutoSeedWatershed(ModelImage, ModelImage, float, float, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed: Constructs new watershed algorithm.
AlgorithmBarrelDistortion - Class in gov.nih.mipav.model.algorithms: Corrects barrel and/or pin cushion distortion for 2D images.
AlgorithmBarrelDistortion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: AlgorithmBarrelDistortion - default constructor.
AlgorithmBarrelDistortion(ModelImage, ModelImage, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: AlgorithmBarrelDistortion.
AlgorithmBase - Class in gov.nih.mipav.model.algorithms: Base abstract class for algorithms.
AlgorithmBase() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase: Default constructor which sets thread stopped to false, source and destination images to null, and destination flag to false.
AlgorithmBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase: Constructor which sets thread stopped to false and sets source and destination images.
AlgorithmBilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: Bilateral filtering smooths an image or VOI region of the image while preserving edges with 2 Gaussian functions.
AlgorithmBilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
AlgorithmBilateralFilter(ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Creates a new AlgorithmBilateralFilter object.
AlgorithmBilateralFilter(ModelImage, ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Constructor which sets the source and destination images, the minimum and maximum progress value.
AlgorithmBoundaryAttenuation - Class in gov.nih.mipav.model.algorithms.filters: Attenuate around the boundary of an object defined by a VOI in an image volume.
AlgorithmBoundaryAttenuation(ModelImage, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Set up the algorithm.
AlgorithmBoxCount - Class in gov.nih.mipav.model.algorithms
AlgorithmBoxCount(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
AlgorithmBrainExtractor - Class in gov.nih.mipav.model.algorithms: A class for segmenting the brain from a 3D MRI.
AlgorithmBrainExtractor(ModelImage, int, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBrainExtractor(ModelImage, int, TriMesh, int, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBrainExtractor.Edge - Class in gov.nih.mipav.model.algorithms: A representation of an edge for the vertex-edge-triangle table.
AlgorithmBrainExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms: An unordered set of 'int' stored in an array.
AlgorithmBrainSurfaceExtractor - Class in gov.nih.mipav.model.algorithms: This class provides an implementation of a second method for segmentation of the brain from a 3D MRI, as opposed to the BET algorithm implemented in AlgorithmBrainExtractor.
AlgorithmBrainSurfaceExtractor(ModelImage, int, float, float, boolean, int, float, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBRISK - Class in gov.nih.mipav.model.algorithms: BRISK - Binary Robust Invariant Scalable Keypoints Reference implementation of [1] Stefan Leutenegger,Margarita Chli and Roland Siegwart, BRISK: Binary Robust Invariant Scalable Keypoints, in Proceedings of the IEEE International Conference on Computer Vision (ICCV2011).
AlgorithmBRISK() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK: AlgorithmBRISK - default constructor.
AlgorithmBRISK(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
AlgorithmBRISK(ModelImage, ModelImage, boolean, int, int, int, boolean, boolean, double, Vector<Double>, Vector<Integer>, double, double, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
AlgorithmBRISK.BriskLayer - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskLongPair - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskPatternPoint - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskShortPair - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.KeyPoint - Class in gov.nih.mipav.model.algorithms
algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Compute the brute-force solution.
algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Compute the brute-force solution.
AlgorithmBSmooth - Class in gov.nih.mipav.model.algorithms: Smoothing of VOI using 1 iteration of bSplines.
AlgorithmBSmooth() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
AlgorithmBSmooth(ModelImage, VOI, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Creates a new AlgorithmBSmooth object.
AlgorithmBSnake - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm derivative using BSplines.
AlgorithmBSnake(ModelImage, float[], int, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Set up the snake algorithm so that it can be run.
AlgorithmBSpline - Class in gov.nih.mipav.model.algorithms: Modified code from Aaron Carass's Java implementation of Philippe Thevenaz's Cubic B-spline Interpolation.
AlgorithmBSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSpline: default constructor.
AlgorithmBSpline.ColorInterpolation - Class in gov.nih.mipav.model.algorithms
AlgorithmBSplineControlPointImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmBSplineControlPointImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
AlgorithmBSplineScatteredDataPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmBSplineScatteredDataPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
AlgorithmCannyEdgeDetection - Class in gov.nih.mipav.model.algorithms
AlgorithmCannyEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: AlgorithmCannyEdgeDetection - default constructor.
AlgorithmCannyEdgeDetection(ModelImage, ModelImage, double, double, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: AlgorithmCannyEdgeDetection.
AlgorithmCellTrackingAGVF - Class in gov.nih.mipav.model.algorithms: Active Contour class optimized for Cell Tacking, based on the following paper:
AlgorithmCellTrackingAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean, float, float, float, float, boolean, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Creates a new AlgorithmCellTrackingAGVF object.
AlgorithmCenterOfMass - Class in gov.nih.mipav.model.algorithms: This algorithm calculates the center of mass for 2D and 3D black and white images.
AlgorithmCenterOfMass(ModelImage, float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Creates a new AlgorithmCenterOfMass object.
AlgorithmCenterOfMassRGB - Class in gov.nih.mipav.model.algorithms: * This algorithm calculates the red, green, and blue center of mass for 2D and 3D color images.
AlgorithmCenterOfMassRGB(ModelImage, float[], float[], float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Default constructor for running algorithm to calculate red, green, and blue centers of mass.
AlgorithmChangeType - Class in gov.nih.mipav.model.algorithms.utilities: This is a convenience function to convert from one image type to another and remap the data into a new range.
AlgorithmChangeType(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Creates a new AlgorithmChangeType object.
AlgorithmChangeType(ModelImage, ModelImage, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Creates a new AlgorithmChangeType object.
AlgorithmCircleGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned circles with a specified radius.
AlgorithmCircleGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: AlgorithmCircleGeneration - default constructor.
AlgorithmCircleGeneration(ModelImage, int, int, int, int, double, double, double, double, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: AlgorithmRandomCircleGeneration.
AlgorithmCircleGeneration.erfcModel - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.erfcModel2 - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleToRectangle - Class in gov.nih.mipav.model.algorithms: References: 1.)
AlgorithmCircleToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: AlgorithmCircleToRectangle - default constructor.
AlgorithmCircleToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: AlgorithmCircleToRectangle.
AlgorithmCircularSectorToRectangle - Class in gov.nih.mipav.model.algorithms: This software uses 2D conformal mapping in converting a circular sector defined by 4 user points at the sector corners to a rectangle of user specified size.
AlgorithmCircularSectorToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: AlgorithmCircularSectorToRectangle - default constructor.
AlgorithmCircularSectorToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: AlgorithmCircularSectorToRectangle.
AlgorithmCoherenceEnhancingDiffusion - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply Coherence Enhancing Anisotropic Diffusion
AlgorithmCoherenceEnhancingDiffusion(ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Creates a new AlgorithmCoherenceEnhancingDiffusion object.
AlgorithmCoherenceEnhancingDiffusion(ModelImage, ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Creates a new AlgorithmCoherenceEnhancingDiffusion object.
AlgorithmColocalizationEM - Class in gov.nih.mipav.model.algorithms: An optional registration may be performed before colocalization.
AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationRegression - Class in gov.nih.mipav.model.algorithms: This algorithm creates a 2D histogram from 2 colors of a single image or from 2 black and white images and uses an orthogonal line fit of the histogram data to generate a correlation line thru the histogram.
AlgorithmColocalizationRegression(ModelImage, ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationRegression(ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColorEdge - Class in gov.nih.mipav.model.algorithms.filters: This algorithm uses a hypercomplex filter to find the edges between a region of two user specified colors.
AlgorithmColorEdge(ModelImage, ModelImage, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: This constructor initialises a Color Edge algorithm for a source and destination image, and ensures that the destination image is ModelStorageBase.UBYTE.
AlgorithmColorSaturation - Class in gov.nih.mipav.model.algorithms: This algorithm changes the saturation of a color image while keeping the hue and intensity constant.
AlgorithmColorSaturation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: AlgorithmColorSaturation - default constructor.
AlgorithmColorSaturation(ModelImage, ModelImage, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: AlgorithmColorSaturation.
AlgorithmComplexConcat - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that generates a complex image from real data and imaginary data.
AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmComplexToReal - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a single greyscale image.
AlgorithmComplexToReal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmConcat - Class in gov.nih.mipav.model.algorithms.utilities: Assumes the pixel resolutions are equal.
AlgorithmConcat(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: Creates a new AlgorithmConcat object.
AlgorithmConcatMult - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult() - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult
AlgorithmConcatMult2Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D: constructor
AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D: constructor
AlgorithmConcatMult3Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: constructor
AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: constructor
AlgorithmConcatMult3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: constructor
AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: constructor
AlgorithmConstELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC for a 3D image.
AlgorithmConstELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmConstPowellOpt3D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 3D image.
AlgorithmConstPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmConstPowellOptBase - Class in gov.nih.mipav.model.algorithms: Powell's Method
AlgorithmConstPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
AlgorithmConstrainedELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedELSUNCOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmConstrainedOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmConstrainedOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmContrastEnhancementUsingExposureFusion - Class in gov.nih.mipav.model.algorithms
AlgorithmContrastEnhancementUsingExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
AlgorithmContrastEnhancementUsingExposureFusion(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
AlgorithmContrastEnhancementUsingExposureFusion.kFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmConvergenceField - Class in gov.nih.mipav.model.algorithms
AlgorithmConvergenceField(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvergenceField
AlgorithmConvert3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities: Converts a 3D dataset that is really a 4D dataset into a 4D dataset.
AlgorithmConvert3Dto4D(ModelImage, int, float, float, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Constructs new algorithm and sets source.
AlgorithmConvert4Dto3D - Class in gov.nih.mipav.model.algorithms.utilities: The image is converted from a 4D to a 3D image.
AlgorithmConvert4Dto3D(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Constructs new algorithm and sets source.
AlgorithmConvert4Dto3D(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Constructs new algorithm and sets source.
AlgorithmConvolver - Class in gov.nih.mipav.model.algorithms: Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Sets the source and kernel images and calls the appropriate method based on image dimensionality.
AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmCorrectSpacing - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to adjust image volume for cases when the slice spacing is not equal to the slice thickness.
AlgorithmCorrectSpacing(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Import source image into the class.
AlgorithmCostFunctions - Class in gov.nih.mipav.model.algorithms: CostFunction - class for specifying optimization function.
AlgorithmCostFunctions(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Creates a new AlgorithmCostFunctions object.
AlgorithmCostFunctions2D - Class in gov.nih.mipav.model.algorithms: CostFunction - class for specifying optimization function.
AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Creates a new AlgorithmCostFunctions2D object.
AlgorithmCrop - Class in gov.nih.mipav.model.algorithms.utilities: Crops 2D and 3D images using a supplied VOI.
AlgorithmCrop(ModelImage, ModelImage, int, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Creates new algorithms to crop image by specified bounds.
AlgorithmCropTilted - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to crop a tilted rectangle
AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: Rotate tilted cuboid to remove tilt and crop cuboid.
AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: Rotate tilted rectangle to remove tilt and crop rectangle.
AlgorithmCubicLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 3 which interpolates a given function f at the points x(-1), x(0), x(1), and x(2), and is given by p(x) = sum from i = -1 to i = 2 of li(x)*f(xi), where li, i = -1,0,1,2, which are called the fundamental polynomials, are given by li(x) = product from k = -1 to k = 2 for k !
AlgorithmCubicLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: AlgorithmCubicLagrangian - default constructor.
AlgorithmCumulativeHistogram - Class in gov.nih.mipav.model.algorithms
AlgorithmCumulativeHistogram(ModelHistogram, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Constructor for RGB image.
AlgorithmCumulativeHistogram(ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Constructor for grey scale image
AlgorithmCyclicPermutation - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmCyclicPermutation(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation
AlgorithmDConvolver - Class in gov.nih.mipav.model.algorithms: Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Sets the source and kernel images and calls the appropriate method based on image dimensionality.
AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDemonsLite - Class in gov.nih.mipav.model.algorithms.registration: Algorithm for non-linear registration with the DEMONS algorithm
AlgorithmDemonsLite(ModelImage, ModelImage, int, int, float, float, String, String) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmDEMRI3 - Class in gov.nih.mipav.model.algorithms: 3 model parameters are fit for each voxel in 3D: 1) K_trans in [0, 0.99] 2) User choice of k_ep in [0, 0.99] or ve 3) f_vp in [0, 0.99] K_trans and k_ep default to rates per second, but the user changed select rates per minute.
AlgorithmDEMRI3(ModelImage, ModelImage, double[], double[], double, boolean, double, int, double, ModelImage, double, double, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: Creates a new AlgorithmDEMRI3 object.
AlgorithmDEMRI3.Fit24DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmDEMRI3.Fit25HModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmDEMRI3.FitDEMRI3ConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmDicomOrder - Class in gov.nih.mipav.model.algorithms.utilities: Put 3D dataset into dicom order.
AlgorithmDicomOrder(ModelImage, int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: In place constructor.
AlgorithmDICOMtoAVI - Class in gov.nih.mipav.model.algorithms.utilities: Recursively traverses a directory and its subfolders, converting all 3D DICOM files to AVI with MP42 Compression.
AlgorithmDICOMtoAVI(String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Default Constructor.
AlgorithmDistanceFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmDistanceFilter(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
AlgorithmDTI2EGFA - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm requires input of a Diffusion Tensor Image to calculate an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image This algorithm works in conjunction with AlgorithmDTITract to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See: Introduction to Diffusion Tensor Imaging, by Susumu Mori
AlgorithmDTI2EGFA(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Initialize the Algorithm with the input DTI Image:
AlgorithmDTIColorDisplay - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
AlgorithmDTIColorDisplay - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: constructor *
AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: constructor *
AlgorithmDTICreateListFile - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
AlgorithmDTICreateListFile(String, String, String, String, String, JTextArea, boolean, boolean, int, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for dicom if registration is to be done first
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for par/rec
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for dicom
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for par/rec if registration is to be done first
AlgorithmDTICreateListFile.InstanceNumberComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: This inner class is used to sort the list by instance number
AlgorithmDTICreateListFile.InstanceNumberVolComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: This inner class is used to sort the list by instance number and vol. the vol is determined by the filename
AlgorithmDTITract - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm requires input of previous calculated FA, EigenVector and EigenValue images from AlgorithmDTI2EGFA to calculate fiber bundle tracts This algorithm works in conjunction with AlgorithmDTI2EGFA to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See:Introduction to Diffusion Tensor Imaging, by Susumu Mori
AlgorithmDTITract(ModelImage, ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean, float, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Initialize the Algorithm with the input DTI Image:
AlgorithmDTITract(ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Initialize the Algorithm with the input DTI Image:
AlgorithmDualContourSearch - Class in gov.nih.mipav.model.algorithms
AlgorithmDualContourSearch(ModelImage, int, int, int, int, double, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
AlgorithmDWI2DTI - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm calculates a Diffusion Tensor Image from a series of Diffusion Weighted Images.
AlgorithmDWI2DTI(ModelImage, boolean, int, int, int, int, int, float, String[][], int[], GMatrixd, String) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Create a new AlgorithmDWI2DTI
AlgorithmDWI2DTI(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
AlgorithmEdgeDetection3D - Class in gov.nih.mipav.model.algorithms
AlgorithmEdgeDetection3D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: AlgorithmEdgeDetection3D - default constructor.
AlgorithmEdgeDetection3D(ModelImage, ModelImage, double, double, double, int, int, int, double, double, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: AlgorithmEdgeDetection3D.
AlgorithmEdgeLaplacian - Class in gov.nih.mipav.model.algorithms: Calculates the EdgeLap of an image at a scale defined by the user.
AlgorithmEdgeLaplacian(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Creates a new AlgorithmEdgeLaplacian object.
AlgorithmEdgeLaplacianSep - Class in gov.nih.mipav.model.algorithms: Calculates the EdgeLap of an image at a scale defined by the user.
AlgorithmEdgeLaplacianSep(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Creates a new AlgorithmEdgeLaplacianSep object.
AlgorithmEdgeNMSuppression - Class in gov.nih.mipav.model.algorithms: Calculates the non-maximum suppression of an image at a scale defined by the user.
AlgorithmEdgeNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Creates a new AlgorithmEdgeNMSuppression object.
AlgorithmEdgePreservingSmoothing - Class in gov.nih.mipav.model.algorithms.filters: These are Maximum Homogeneity Neighbor Filters.
AlgorithmEdgePreservingSmoothing(ModelImage, ModelImage, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing
AlgorithmEfficientWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmEfficientWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
AlgorithmEfficientWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmEfficientWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmEllipseGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned ellipses with a specified semi-major axis, semi-minor axis, and angle phi between the x-axis and the major axis of the ellipse.
AlgorithmEllipseGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: AlgorithmEllipseGeneration - default constructor.
AlgorithmEllipseGeneration(ModelImage, int, int, double, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: AlgorithmEllipseGeneration.
AlgorithmEllipseToCircle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of an ellipse to a circle.
AlgorithmEllipseToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: AlgorithmEllipseToCircle - default constructor.
AlgorithmEllipseToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: AlgorithmEllipseToCircle.
AlgorithmEllipseToRectangle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of an ellipse to a rectangle.
AlgorithmEllipseToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: AlgorithmEllipseToRectangle - default constructor.
AlgorithmEllipseToRectangle(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: AlgorithmEllipseToRectangle.
AlgorithmEllipsoidFit - Class in gov.nih.mipav.model.algorithms: This code fits data points to a 3D ellipsoid.
AlgorithmEllipsoidFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: Creates a new AlgorithmEllipsoidFit object.
AlgorithmEllipticFilter - Class in gov.nih.mipav.model.algorithms.filters: This module contains a port from FORTRAN to Java of the FORTRAN program for designing elliptic-function filters and a port from MATLAB to Java of the MATLAB program ellipap1 for designing an elliptic analog lowpass filter prototype found in "Elliptic Functions for Filter Design" by H.
AlgorithmEllipticFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter: The FORTRAN example in the article of n = 7, apd = 0.1dB, k = 0.8 gives in Table VI: Make FORTRAN zeros poles and FORTRAN poles zeros Poles: -0.0455944342 + j1.026557002 -0.1713670100 + j0.918389608 -0.3689660125 + j0.603979789 -0.4980421689 + j0.0 Zeros: 1.268831784 1.467798747 2.384834232 For the MATLAB example rs = 55.43dB.
AlgorithmEllipticFilter(int, double, double, double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
AlgorithmEllipticFilter(int, double, double, double[], double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
AlgorithmEllipticFourierDescriptors - Class in gov.nih.mipav.model.algorithms: Smoothing VOI with Elliptic Fourier Descriptors.
AlgorithmEllipticFourierDescriptors() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
AlgorithmEllipticFourierDescriptors(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Creates a new AlgorithmEllipticFourierDescriptors object.
AlgorithmELSUNCOpt2D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 2D image.
AlgorithmELSUNCOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt2D.FitOAR2DLMModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 3D image.
AlgorithmELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D.FitOAR3DLMModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmEmbeddedConfidenceEdgeDetection(ModelImage, ModelImage, int, double, double, double, double, double, double, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgImage - Class in gov.nih.mipav.model.algorithms
AlgorithmEntropicEdgeDetection - Class in gov.nih.mipav.model.algorithms
AlgorithmEntropicEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: AlgorithmEntropicEdgeDetection - default constructor.
AlgorithmEntropicEdgeDetection(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: AlgorithmEntropicEdgeDetection.
AlgorithmEntropyMinimization - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmEntropyMinimization(ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Creates a new AlgorithmEntropyMinimization object.
AlgorithmEntropyMinimization(ModelImage, ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Creates a new AlgorithmEntropyMinimization object.
AlgorithmEvaluateMaskSegmentation - Class in gov.nih.mipav.model.algorithms: Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
AlgorithmEvaluateMaskSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: Creates a new AlgorithmEvaluateMaskSegmentation object.
AlgorithmEvaluateSegmentation - Class in gov.nih.mipav.model.algorithms: Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
AlgorithmEvaluateSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: Creates a new AlgorithmEvaluateSegmentation object.
AlgorithmExtractSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that extracts the slices indicated in the list from the srcImage and puts them into the destImage.
AlgorithmExtractSlices(ModelImage, ModelImage, String[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: Import source and destination images into the class.
AlgorithmExtractSlicesVolumes - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmExtractIndividualSlices
AlgorithmExtractSlicesVolumes(ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Import source and destination images into the class.
AlgorithmExtractSurface - Class in gov.nih.mipav.model.algorithms: Extracts a surface using Tetrahedron Extraction.
AlgorithmExtractSurface(ModelImage, float, int, boolean, boolean, float, String, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Creates a new AlgorithmExtractSurface object.
AlgorithmExtractSurfaceCubes - Class in gov.nih.mipav.model.algorithms: Extracts a surface using Marching Cube Extraction.
AlgorithmExtractSurfaceCubes(ModelImage, int, int, boolean, boolean, float, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Creates a new AlgorithmExtractSurfaceCubes object.
AlgorithmFaceAnonymizer - Class in gov.nih.mipav.model.algorithms: FaceAnonymizer algorithm computes the "face" from a ModelImage based on input parameters that specify the min/max voxel values for the face voxels, and the maximum skin thinkness.
AlgorithmFaceAnonymizer(ModelImage, int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Create a face Anonymizer.
AlgorithmFaceAnonymizerBET - Class in gov.nih.mipav.model.algorithms: Anonymize an image of a patient's head by removing the face.
AlgorithmFaceAnonymizerBET(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Construct the face anonymizer, but do not run it yet.
AlgorithmFaceAnonymizerBET.BitSetUtility - Class in gov.nih.mipav.model.algorithms: Private utility class for operations on BitSets
AlgorithmFacetModel - Class in gov.nih.mipav.model.algorithms
AlgorithmFacetModel(ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
AlgorithmFacetModel(ModelImage, ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms.levelset: DOCUMENT ME!
AlgorithmFastMarching(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Creates a new ViewJFrameFastMarching3 object.
AlgorithmFastMarching(ModelImage, float[], int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: AnisotropicDiffusion.
AlgorithmFastMarching(ModelImage, int, int, float, float, float, float, float, int, float, float, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Creates a new AlgorithmFastMarching3 object.
AlgorithmFFT - Class in gov.nih.mipav.model.algorithms.filters: Processing images by filtering in the frequency domain is a 3 step process: 1.)
AlgorithmFFT(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
AlgorithmFFT(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
AlgorithmFFT2 - Class in gov.nih.mipav.model.algorithms.filters: Processing images by filtering in the frequency domain is a 3 step process: 1.)
AlgorithmFFT2(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
AlgorithmFFT2(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
AlgorithmFIREEdgeExtraction - Class in gov.nih.mipav.model.algorithms.filters: References: 1.)
AlgorithmFIREEdgeExtraction(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Constructor for images in which changes are returned to the source image.
AlgorithmFIREEdgeExtraction(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmFlip - Class in gov.nih.mipav.model.algorithms.utilities: Flips 2D, 3D or 4D grays scale or color dataset about X, Y, or Z axis (when applicable) when AlgorithmFlip.IMAGE is passed to the constructor.
AlgorithmFlip(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Flips 2D, 3D or 4D grays scale or color dataset about X or Y axis.
AlgorithmFlip.ShapeHolder - Class in gov.nih.mipav.model.algorithms.utilities: DOCUMENT ME!
AlgorithmFloodFill - Class in gov.nih.mipav.model.algorithms: Stack based flood-fill for 2D and 3D images.
AlgorithmFloodFill(BitSet, int[], int, Point3D) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Stack based flood-fill for 2D and 3D images.
AlgorithmFloodFill(BitSet, int[], int, Point) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Stack based flood-fill for 2D and 3D images.
AlgorithmFRAP - Class in gov.nih.mipav.model.algorithms: Fluorescence Recovery after PhotoBleaching Only 1 color will be used from a color image.
AlgorithmFRAP(ModelImage, boolean, boolean, boolean, int, int, int, int, int, boolean, int, boolean, boolean, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Creates a new AlgorithmFRAP object.
AlgorithmFRAP.distanceIntensityComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.distanceIntensityItem - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.Fit24DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitExpModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitExpModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2i - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2p - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2s - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullModel2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitIntensityProfile - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitPure1DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitPure1DNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSineModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSingleExponentialModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSingleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNL2solInt2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNL2solModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConInt2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel3 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.IntModel - Class in gov.nih.mipav.model.algorithms: class IntModel extends Integration { public IntModel(double lower, double upper, int routine, double eps) { super(lower, upper, routine, eps); } public double intFunc(double x) { double function = 0.0; if ((x !
AlgorithmFRAP.IntModel2 - Class in gov.nih.mipav.model.algorithms: class IntModel2 extends Integration2 { public IntModel2(double lower, double upper, int routine, double breakPoints[], double epsabs, double epsrel, int limit) { super(lower, upper, routine, breakPoints, epsabs, epsrel, limit); } public double intFunc(double x) { double function = 0.0; if ((x !
AlgorithmFRAP.IntModelBessel - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.IntModelI0NuclearArea - Class in gov.nih.mipav.model.algorithms
AlgorithmFrequencyFilter - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmFrequencyFilter.java.
AlgorithmFrequencyFilter(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used in Laplacian medialness option of live wire cost function.
AlgorithmFrequencyFilter(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilter(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilter(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used for Gabor transform.
AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilter(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used for Gabor transform.
AlgorithmFrequencyFilterColor - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmFrequencyFilterColor.java.
AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used in Laplacian medialness option of live wire cost function.
AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilterColor(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilterColor(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used for Gabor transform.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used for Gabor transform.
AlgorithmFRETAcceptorPhotobleach - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETAcceptorPhotobleach(ModelImage, ModelImage, boolean, boolean, boolean, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: Creates a new AlgorithmFRETAcceptorPhotobleach object.
AlgorithmFRETBleedThrough - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETBleedThrough(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: Creates a new AlgorithmFRETBleedThrough object.
AlgorithmFRETEfficiency - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETEfficiency(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, float, float, float, float, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: Creates a new AlgorithmFRETEfficiency object.
AlgorithmFuzzMinDeAndChatterji - Class in gov.nih.mipav.model.algorithms.filters: This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
AlgorithmFuzzMinDeAndChatterji(ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Constructor for images in which changes are returned to the source image.
AlgorithmFuzzMinDeAndChatterji(ModelImage, ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmFuzzyCMeans - Class in gov.nih.mipav.model.algorithms: Fuzzy C-Means Segmentation algorithm
AlgorithmFuzzyCMeans(ModelImage[], ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Creates a new AlgorithmFuzzyCMeans object.
AlgorithmFuzzyCMeans(ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Creates a new AlgorithmFuzzyCMeans object.
AlgorithmFuzzyConnectednessSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmFuzzyConnectednessSegmentation(ModelImage[], ModelImage, int, int, double, double, Vector<Integer>, Vector<Short>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
AlgorithmFuzzyMinimization - Class in gov.nih.mipav.model.algorithms.filters: This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
AlgorithmFuzzyMinimization(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Constructor for images in which changes are returned to the source image.
AlgorithmFuzzyMinimization(ModelImage, ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmGaussianBlur - Class in gov.nih.mipav.model.algorithms.filters: The application of this algorithm blurs an image or VOI region of the image with a Gaussian function at a user defined scale (sigma - standard deviation).
AlgorithmGaussianBlur(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Creates a new AlgorithmGaussianBlur object.
AlgorithmGaussianBlur(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Constructor which sets the source and destination images, the minimum and maximum progress value.
AlgorithmGaussianBlurSep - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gaussian blur of an image at a scale defined by the user (using separable convolutions).
AlgorithmGaussianBlurSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Creates a new AlgorithmGaussianBlurSep object.
AlgorithmGaussianMixtureModelEM - Class in gov.nih.mipav.model.algorithms: Copyright (c) 1995 The Board of Trustees of Purdue University.
AlgorithmGaussianMixtureModelEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM(int, int, String, String, String, String, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM(String, String, String, String, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM.ClassData - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.ClassSig - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.SigSet - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.SubSig - Class in gov.nih.mipav.model.algorithms
AlgorithmGenerateIsolines - Class in gov.nih.mipav.model.algorithms
AlgorithmGenerateIsolines(ModelImage, ModelImage, double, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
AlgorithmGradientInverseWeightedSmoothing - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmGradientInverseWeightedSmoothing(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
AlgorithmGradientInverseWeightedSmoothing(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
AlgorithmGradientMagnitude - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gradient magnitude of an image at a scale defined by the user.
AlgorithmGradientMagnitude(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
AlgorithmGradientMagnitude(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
AlgorithmGradientMagnitudeSep - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gradient magnitude of an image at a scale defined by the user (using separable convolutions).
AlgorithmGradientMagnitudeSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Creates a new AlgorithmGradientMagnitudeSep object.
AlgorithmGraphBasedSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation(ModelImage, ModelImage, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation: Constructs graph based segmentation algorithm.
AlgorithmGraphBasedSegmentation.edge - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.edgeComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.uni_elt - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.universe - Class in gov.nih.mipav.model.algorithms
AlgorithmGrayScaleMorphology25D - Class in gov.nih.mipav.model.algorithms: 2.5D mathematical morphology class applied to Gray scale images. (2D morphology on 3D volumes).
AlgorithmGrayScaleMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmGrayScaleMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Creates a new AlgorithmGrayScaleMorphology25D object.
AlgorithmGrayScaleMorphology2D - Class in gov.nih.mipav.model.algorithms: Two-Dimensional mathematical morphology class applied to Gray scale images.
AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmGrayScaleMorphology2D object.
AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmGrayScaleMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmGrayScaleMorphology2D object.
AlgorithmGrayScaleMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmGrayScaleMorphology3D - Class in gov.nih.mipav.model.algorithms: Three-Dimensional mathematical morphology class applied to Gray scale images.
AlgorithmGrayScaleMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmGrayScaleMorphology3D object.
algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
AlgorithmGuidedFilter - Class in gov.nih.mipav.model.algorithms.filters: The MIT License (MIT) Copyright (c) 2014 Atilim Cetin Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
AlgorithmGuidedFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
AlgorithmGuidedFilter(ModelImage, ModelImage, ModelImage, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
AlgorithmGVF - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm derivative using BSplines.
AlgorithmGVF(ModelImage, ModelImage, float[], int, int, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGVF: Creates a new AlgorithmGVF object.
AlgorithmHaralickTexture - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Creates a new AlgorithmHaralickTexture object for color image.
AlgorithmHarrisCornerDetector - Class in gov.nih.mipav.model.algorithms
AlgorithmHarrisCornerDetector() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: AlgorithmHarrisCornerDetector - default constructor.
AlgorithmHarrisCornerDetector(ModelImage, ModelImage, float, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: AlgorithmHarrisCornerDetector.
AlgorithmHarrisLaplace - Class in gov.nih.mipav.model.algorithms
AlgorithmHarrisLaplace() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: AlgorithmHarrisLaplace - default constructor.
AlgorithmHarrisLaplace(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: AlgorithmHarrisLaplace.
AlgorithmHeightFunction - Class in gov.nih.mipav.model.algorithms: The class generates a triangle or quad mesh of a 2D dataset (image) to be displayed in the surface viewer.
AlgorithmHeightFunction(ModelImage, int, String, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Sets up variables needed by algorithm to run.
AlgorithmHepticLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 7 which interpolates a given function f at the points x(-3), x(-2), x(-1), x(0), x(1), x(2), x(3), and x(4) and is given by p(x) = sum from i = -3 to i = 4 of li(x)*f(xi), where li, i = -3,-2,-1,0,1,2,3,4 which are called the fundamental polynomials, are given by li(x) = product from k = -3 to k = 4 for k !
AlgorithmHepticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: AlgorithmHepticLagrangian - default constructor.
AlgorithmHessian - Class in gov.nih.mipav.model.algorithms: Provides functions to convolve an image with the second derivitive of the Gaussian function to obtain the Hessian matrix for a particular point on the image.
AlgorithmHessian(ModelImage, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHessian: Creates a new AlgorithmHessian object.
AlgorithmHilbertTransform - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmHilbertTransform(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform
AlgorithmHillClimbingWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmHillClimbingWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
AlgorithmHillClimbingWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmHillClimbingWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmHistogram - Class in gov.nih.mipav.model.algorithms: Calculates the histogram for an image.
AlgorithmHistogram(ModelHistogram, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelHistogram, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object.
AlgorithmHistogram(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram.GrayLevelClass - Class in gov.nih.mipav.model.algorithms: Used specifally by the Otsu threshold algorithm to define a gray level object for calculating probabilities.
AlgorithmHistogram2Dim - Class in gov.nih.mipav.model.algorithms: This algorithm creates a two dimensional histogram of the data in 2 black and white images or 1 color image. if doLinearRescale is true, the range of data in the second image is rescaled to be the same as the range of data in the first image.
AlgorithmHistogram2Dim(ModelImage, ModelImage, boolean, boolean, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmHistogram2Dim(ModelImage, ModelImage, ModelImage, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmHistogramMatch - Class in gov.nih.mipav.model.algorithms: Algorithm that matches the transforms a match or source image so as to make its histogram equal to the histogram of a base image.
AlgorithmHistogramMatch(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Constructor for 3D images in which changes are returned to the source image.
AlgorithmHistogramMatch(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmHistogramSliceMatch - Class in gov.nih.mipav.model.algorithms: Algorithm that matches or transforms a match or source slice so as to make its histogram equal to the histogram of a base slice.
AlgorithmHistogramSliceMatch(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Constructor for 3D images in which changes are returned to the source image.
AlgorithmHistogramSliceMatch(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmHMRF_EM - Class in gov.nih.mipav.model.algorithms: This is a port of the MATLAB files HMRF_EM.m and MRF_MAP.m written by Quan Wang to Java
AlgorithmHMRF_EM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: AlgorithmHMRF_EM - default constructor.
AlgorithmHMRF_EM(ModelImage, ModelImage, int, int, float, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: AlgorithmHMRF_EM.
AlgorithmHoughCardioid - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate theta0, a0 points in the Hough transform.
AlgorithmHoughCardioid() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: AlgorithmHoughCardioid - default constructor.
AlgorithmHoughCardioid(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: AlgorithmHoughCardioid.
AlgorithmHoughCircle - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate x0, y0, rad points in the Hough transform.
AlgorithmHoughCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: AlgorithmHoughCircle - default constructor.
AlgorithmHoughCircle(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: AlgorithmHoughCircle.
AlgorithmHoughEllipse - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate p, q, r1, r2, and theta points in the Hough transform.
AlgorithmHoughEllipse() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: AlgorithmHoughEllipse - default constructor.
AlgorithmHoughEllipse(ModelImage, ModelImage, double, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: AlgorithmHoughEllipse.
AlgorithmHoughHyperbola - Class in gov.nih.mipav.model.algorithms: This work is made possible by the following mathematical theorem proved by Professor Alan Horwitz of Penn State University: Finding the Center of a Hyperbola, H, given three nonparallel tangent lines to H and the corresponding points of tangency.
AlgorithmHoughHyperbola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: AlgorithmHoughHyperbola - default constructor.
AlgorithmHoughHyperbola(ModelImage, ModelImage, int, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: AlgorithmHoughHyperbola.
AlgorithmHoughLine - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate rho, theta points in the Hough transform.
AlgorithmHoughLine() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: AlgorithmHoughLine - default constructor.
AlgorithmHoughLine(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: AlgorithmHoughLine.
AlgorithmHoughParabola - Class in gov.nih.mipav.model.algorithms: [(y - vy)*cos(phi) - (x - vx)*sin(phi)]**2 = 4*p*[(y - vy)*sin(phi) + (x - vx)*cos(phi)] where vx, vy are the coordinates of the parabola vertex p is the distance between the vertex and focus of the parabola This Hough transform uses (xi, yi) points in the original image space to generate vx, vy, phi, p points in the Hough transform.
AlgorithmHoughParabola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: AlgorithmHoughParabola - default constructor.
AlgorithmHoughParabola(ModelImage, ModelImage, int, int, int, double, int, float, float, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: AlgorithmHoughParabola.
AlgorithmHurstIndex - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmHurstIndex(ModelImage, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for black and white image.
AlgorithmHurstIndex(ModelImage, int, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for color image.
AlgorithmHurstIndex(ModelImage, ModelImage, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for black and white image.
AlgorithmHurstIndex(ModelImage, ModelImage, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for color image.
AlgorithmHurstIndex.DistanceIntensity - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmHurstIndex.DistanceIntensityComparator - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmIAGCWD - Class in gov.nih.mipav.model.algorithms
AlgorithmIAGCWD() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
AlgorithmIAGCWD(ModelImage, ModelImage, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
AlgorithmIHN3Correction - Class in gov.nih.mipav.model.algorithms: N3 Inhomogeneity correction This is based on code by John G.
AlgorithmIHN3Correction(ModelImage, ModelImage, ModelImage, float, int, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Creates a new AlgorithmIHN3Correction object.
AlgorithmImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that adds, subtracts, multiplies, or divides an image by by another image.
AlgorithmImageCalculator(ModelImage, ModelImage[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: constructor used for bulk images
AlgorithmImageCalculator(ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Creates a new AlgorithmImageCalculator object using srcImgA srcImgB.
AlgorithmImageCalculator(ModelImage, ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Creates a new AlgorithmImageCalculator object.
AlgorithmImageHessian - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmImageHessian(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageHessian(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageHessian(ModelImage, ModelImage, int, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageMath - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that adds, subtracts, multiplies, or divides an image by some user specified value.
AlgorithmImageMath(ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Creates a new AlgorithmImageMath object.
AlgorithmImageMath(ModelImage, ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Creates a new AlgorithmImageMath object.
AlgorithmImageMath.Operator - Enum in gov.nih.mipav.model.algorithms.utilities
AlgorithmIndependentComponents - Class in gov.nih.mipav.model.algorithms: This algorithm operates on 2D and 3D black and white and color images.
AlgorithmIndependentComponents(ModelImage[], ModelImage[], int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Creates a new AlgorithmIndependentComponents object.
AlgorithmIndependentComponents(ModelImage[], ModelImage, int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Creates a new AlgorithmIndependentComponents object.
AlgorithmInsertSlice - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to insert a slice.
AlgorithmInsertSlice(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Import source and destination images into the class.
AlgorithmInsertVolume - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmInsertVolume(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Import source and destination images into the class.
AlgorithmInterface - Interface in gov.nih.mipav.model.algorithms: The interface used by all classes which want to respond to the conclusion of an algorithm.
AlgorithmIsophoteCurvature - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmIsophoteCurvature(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
AlgorithmIsophoteCurvature(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
AlgorithmIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmIteratedBlindDeconvolution(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: Creates a new AlgorithmIteratedBlindDeconvolution object.
AlgorithmKernelRegression - Class in gov.nih.mipav.model.algorithms.filters: This is a port of MATLAB routines contained in kernelRegressionBasedImageProcessingToolBox_ver1-2beta written by Hiroyuki Takeda, Sina Farsiu, and Peyman Milanfar.
AlgorithmKernelRegression(ModelImage, ModelImage, int, boolean, boolean, boolean, double, boolean, double, boolean, double, float, float, float, int, int, int, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Creates a new AlgorithmKernelRegression object.
AlgorithmKMeans - Class in gov.nih.mipav.model.algorithms: This program can be run on data of any dimensionality.
AlgorithmKMeans(ModelImage, int, int, double[][], double[], int[], double[], double[][], String, int, float[], float[], float[], double, boolean, boolean, double[], boolean, double[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmKMeans
AlgorithmKMeans.positionWeightComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmKMeans.positionWeightItem - Class in gov.nih.mipav.model.algorithms
AlgorithmLaplacian - Class in gov.nih.mipav.model.algorithms.filters: Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
AlgorithmLaplacian(ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, float[], boolean[], boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess - Class in gov.nih.mipav.model.algorithms: Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLawsTexture - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLawsTexture(ModelImage[], ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
AlgorithmLearnFromFailure64 - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
AlgorithmLearnFromFailure64.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64Knees - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
AlgorithmLearnFromFailure64Knees.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
AlgorithmLevelSet - Class in gov.nih.mipav.model.algorithms: This algorithm iteratively expands or contracts one or more contours to a boundary.
AlgorithmLevelSet(ModelImage, float[], int, int, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: LevelSet.
AlgorithmLevelSetDiffusion - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmLevelSetDiffusion(ModelImage, float[], int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: AnisotropicDiffusion.
AlgorithmLLE - Class in gov.nih.mipav.model.algorithms
AlgorithmLLE(ModelImage, ModelImage, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLLE: Creates a new AlgorithmLLE object.
AlgorithmLLE.distanceIndexComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmLLE.distanceIndexItem - Class in gov.nih.mipav.model.algorithms
AlgorithmLoadB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImage.AlgorithmLoadB
AlgorithmLocalNormalization - Class in gov.nih.mipav.model.algorithms.filters: Local Normalisation equalises colour levels among pixels by removing variations due to lighting; this brings out contrasts in detail.
AlgorithmLocalNormalization(ModelImage, ModelImage, float[], double, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: This constructor initialises a Local normalisation algorithm for a source and destination image, and ensures that the destination image is ModelStorageBase.FLOAT.
AlgorithmLocalVariance - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLocalVariance(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmLogSlopeMapping - Class in gov.nih.mipav.model.algorithms
AlgorithmLogSlopeMapping(ModelImage, ModelImage[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping
AlgorithmLowerCompletion - Class in gov.nih.mipav.model.algorithms
AlgorithmLowerCompletion(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
AlgorithmLuminanceAdaptation - Class in gov.nih.mipav.model.algorithms
AlgorithmLuminanceAdaptation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
AlgorithmLuminanceAdaptation(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
AlgorithmMarkovSegment - Class in gov.nih.mipav.model.algorithms
AlgorithmMarkovSegment(ModelImage, ModelImage, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
AlgorithmMarkovSmooth - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmMarkovSmooth(ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
AlgorithmMarkovSmooth(ModelImage, ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
AlgorithmMask - Class in gov.nih.mipav.model.algorithms.utilities: Allow the user to fill a VOI or fill everything outside the VOI with a specific fill value.
AlgorithmMask(ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, Color, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMatchForReference - Class in gov.nih.mipav.model.algorithms: Will take Two 2D images (one Reference, one Adjusted) and use the Reference image's Resolutions to transform the adjusted Image into a new size and resolution that the Reference Image can then be matched to, while preserving all Field of Views (there is no loss of FOV).
AlgorithmMatchForReference(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Constructor.. takes in a reference and adjusted modelImage
AlgorithmMatchImages - Class in gov.nih.mipav.model.algorithms.utilities: Matches two ModelImages.
AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Create an AlgorithmMatchImages to match the two input images.
AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Create an AlgorithmMatchImages to match the two input images.
AlgorithmMaximumIntensityProjection - Class in gov.nih.mipav.model.algorithms.utilities: Computes the maximum or the minimum intensity along each projection of a 3D image.
AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Estimates the maximum intensity projection in each direction of a 3D black and white image
AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Estimates the maximum intensity projection of a 3D color image
AlgorithmMaximumLikelihoodIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms: An implementation of Maximum Likelihood Iterated Blind Deconvolution based on the following papers:
AlgorithmMaximumLikelihoodIteratedBlindDeconvolution(ModelImage, int, int, float, float, float, boolean, int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Creates a new AlgorithmMaximumLikelihoodIteratedBlindDeconvolution object.
AlgorithmMean - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply a mean filter to an image, placing it in a new ModelImage if New image is selected or returning the changed picture to the same image if Replace image is selected.
AlgorithmMean(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMean(ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMean(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMean(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMeanShiftClustering - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmMeanShiftClustering(ModelImage, int, int, int, String, String, int, int, double, boolean, float, boolean, float, int, int, boolean, int, int, float[], ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: File formats: Files are all ASCII files.
AlgorithmMeanShiftClustering.fams_cut - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_hash_entry - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_hash_entry2 - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_res_cont - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.famsPoint - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmMeanShiftSegmentation(ModelImage, ModelImage, AlgorithmMeanShiftSegmentation.kernelType, AlgorithmMeanShiftSegmentation.kernelType, float, float, int, AlgorithmMeanShiftSegmentation.SpeedUpLevel, boolean, double, double[], boolean, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
AlgorithmMeanShiftSegmentation.ClassStateStruct - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.kernelType - Enum in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.RAList - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.REGION - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.RegionList - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.SpeedUpLevel - Enum in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.userWeightFunct - Class in gov.nih.mipav.model.algorithms
AlgorithmMedian - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply a median filter to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMidsagittal - Class in gov.nih.mipav.model.algorithms: Finds the midsagittal line of a brain MRI by: Flipping the image horizontally. Registering the flipped image against the original. Getting the angle that the registration rotated the image. Transforming the original image by half the registration rotation.
AlgorithmMidsagittal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Construct the midsagittal algorithm.
AlgorithmMinimumPerimeterPolygon - Class in gov.nih.mipav.model.algorithms: Smoothing VOI with minimum perimeter polygon.
AlgorithmMinimumPerimeterPolygon() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
AlgorithmMinimumPerimeterPolygon(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Creates a new AlgorithmMinimumPerimeterPolygon object.
AlgorithmMixGaussEM - Class in gov.nih.mipav.model.algorithms
AlgorithmMixGaussEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
AlgorithmMixGaussEM.model - Class in gov.nih.mipav.model.algorithms
AlgorithmMode - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmMode applies one of the user specified kernels to a 2D or 3D BYTE, SHORT, INTEGER, UBYTE, USHORT, UINTEGER.
AlgorithmMode(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMode(ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMode(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMode(ModelImage, ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMorphologicalFilter - Class in gov.nih.mipav.model.algorithms.filters: Performs morphological filtering on black and white images.
AlgorithmMorphologicalFilter(ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Constructs a Morphological filter object.
AlgorithmMorphologicalFilter(ModelImage, ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Constructs a Morphological filter object.
AlgorithmMorphology25D - Class in gov.nih.mipav.model.algorithms: 2.5D mathmatical morphology class (2D morphology on 3D volumes).
AlgorithmMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmMorphology2D - Class in gov.nih.mipav.model.algorithms: Two-Dimensional mathmatical morphology class.
AlgorithmMorphology2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
AlgorithmMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmMorphology3D - Class in gov.nih.mipav.model.algorithms: Three-Dimensional mathmatical morphology class.
AlgorithmMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmMosaicToSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm requires input of 2D or 3D mosaics.
AlgorithmMosaicToSlices(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices: Creates a new AlgorithmMosaicToSlices object.
AlgorithmMRIShadingCorrection - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmMRIShadingCorrection(ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Creates a new AlgorithmMRIShadingCorrection object.
AlgorithmMRIShadingCorrection(ModelImage, ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Creates a new AlgorithmMRIShadingCorrection object.
AlgorithmMSER - Class in gov.nih.mipav.model.algorithms
AlgorithmMSER(ModelImage, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER
AlgorithmMSER.VlMserExtrReg - Class in gov.nih.mipav.model.algorithms: Extremal regions (ER) are extracted from the region forest.
AlgorithmMSER.VlMserFilt - Class in gov.nih.mipav.model.algorithms
AlgorithmMSER.VlMserReg - Class in gov.nih.mipav.model.algorithms: Extremal regions and maximally stable extremal regions are instances of image regions.
AlgorithmMSER.VlMserStats - Class in gov.nih.mipav.model.algorithms
AlgorithmMSpectralFuzzyCMeans - Class in gov.nih.mipav.model.algorithms: Fuzzy C-Means Segmentation algorithm
AlgorithmMSpectralFuzzyCMeans(ModelImage[], ModelImage[], int, int, int, int, float, float, float, boolean, int, boolean, int, float, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: AlgorithmMSpectralFuzzyCMeans - Constructor.
AlgorithmMultiExponentialFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmMultiExponentialFitting() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
AlgorithmMultiExponentialFitting(int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int, double[], int, double[], double[], int[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
AlgorithmN4MRIBiasFieldCorrectionFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmN4MRIBiasFieldCorrectionFilter(ModelImage, ModelImage, ModelImage, int, double, double, double, int, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter: Constructor which sets the source and destination images
AlgorithmNearlyCircleToCircle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of a nearly circular region to a circle.
AlgorithmNearlyCircleToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: AlgorithmNearlyCircleToCircle - default constructor.
AlgorithmNearlyCircleToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: AlgorithmNearlyCircleToCircle.
AlgorithmNetworkSnake(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake
AlgorithmNetworkSnake.AnchorPosition - Enum in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ContractingSnake - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ContractingSnakeNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ExtentionMath - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.IMetadataProvider - Interface in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.Metadata - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.NetworkSnake - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.Pixel - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.PixelGrid - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.PixelGrid.PixelGridNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser.Node - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.tuple2i - Class in gov.nih.mipav.model.algorithms
AlgorithmNLNoiseReduction - Class in gov.nih.mipav.model.algorithms.filters: This is a port of the SUSAN Nonlinear Noise reduction program.
AlgorithmNLNoiseReduction(ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: AlgorithmNLNoiseReduction - Constructor.
AlgorithmNLNoiseReduction(ModelImage, ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: AlgorithmNLNoiseReduction - Constructor.
AlgorithmNMSuppression - Class in gov.nih.mipav.model.algorithms.filters: Calculates the non-maximum suppression of an image at a scale defined by the user Edges are defined as the union of points for which the gradient magnitude assumes a maximum in the gradient direction.
AlgorithmNMSuppression(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: AlgorithmNMSuppression - Constructor.
AlgorithmNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: AlgorithmNMSuppression - Constructor.
AlgorithmNoise - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm used to add Gaussian, Poisson, Uniform, Rayleigh, or Rician noise to an image.
AlgorithmNoise(ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Creates a new AlgorithmNoise object.
AlgorithmNoise(ModelImage, ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Creates a new AlgorithmNoise object.
AlgorithmNonlocalMeansFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of the 09/03/2006 NLmeansfilter.m and UNLmeansfilter2.m on 02/15/2008 by Jose Vicente Manjon Herrera & Antoni Buades.
AlgorithmNonlocalMeansFilter(ModelImage, ModelImage, int, int, boolean, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Creates a new AlgorithmNonlocalMeans object.
AlgorithmNonMaxSuppts - Class in gov.nih.mipav.model.algorithms
AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
AlgorithmNonparametricSegmentation - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmNonparametricSegmentation(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Creates a new AlgorithmNonparametricSegmentation object.
AlgorithmNonparametricSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Creates a new AlgorithmNonparametricSegmentation object.
AlgorithmObjectExtractor - Class in gov.nih.mipav.model.algorithms: A class for segmenting objects.
AlgorithmObjectExtractor(ModelImage, VOI, boolean, boolean, TriMesh, float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Create an extractor for segmenting an object from an image.
AlgorithmObjectExtractor.Edge - Class in gov.nih.mipav.model.algorithms: A representation of an edge for the vertex-edge-triangle table.
AlgorithmObjectExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms: An unordered set of 'int' stored in an array.
AlgorithmOptimizeFunctionBase - Interface in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmParameters - Class in gov.nih.mipav.view.dialogs: This class standardizes the parameter names given to many common parameters used in algorithms.
AlgorithmParameters() - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters: Creates a new AlgorithmParameters object to be used to record the current parameters entered into the algorithm's GUI by the user.
AlgorithmParameters(ParameterTable) - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters: Creates a new AlgorithmParameters object to be used to set up the algorithm's GUI from stored parameters.
AlgorithmPbBoundaryDetection - Class in gov.nih.mipav.model.algorithms: Compute probability of boundary using brightness gradient and texture gradient Original MATLAB code written by David R.
AlgorithmPbBoundaryDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: AlgorithmPbBoundaryDetection - default constructor.
AlgorithmPbBoundaryDetection(ModelImage, ModelImage, int, int, double, double, int, String, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: AlgorithmPbBoundaryDetection.
algorithmPerformed() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
algorithmPerformed(AlgorithmBase) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmInterface: Called after an algorithm this listener is registered to exits (maybe successfully, maybe not).
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: alg performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Respond to the completion or failure of the algorithm we called.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: algorithmPerformed this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: This method is required if the AlgorithmInterface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: method that is called after algorithm is finished.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for catching end of algorithm events.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Algorithm notifies dialog of status.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: When the morphology algorithm finish running, this method is invoked.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Called when the AlgorithmMaximumLikelihoodIteratedBlindDeconvolution has finished processing the source image.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: If the destination image is not null, put in frame.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for catching end of algorithm events.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: alg performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: the standard thread-done event for AlgorithmBase.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: algorithmPerformed - when the alignment algorithm finishes, the transformed tile is blended with the reference image and displayed:
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Called when AlgorithmDWI2DTI is done creating the DTI image.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: empty function to implement the algorithm interface.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: This method is required if the AlgorithmPerformed interface is implemented.
AlgorithmPhaseCongruency - Class in gov.nih.mipav.model.algorithms: Ported from Peter Kovesi's MATLAB code for Phase Congruency Available from: http://www.csse.uwa.edu.au/~pk/research/matlabfns/PhaseCongruency/phasecong3.m and: http://www.csse.uwa.edu.au/~pk/research/matlabfns/FrequencyFilt/lowpassfilter.m in reference to the method lowpassFilter(); % References: % % Peter Kovesi, "Image Features From Phase Congruency".
AlgorithmPhaseCongruency(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
AlgorithmPointArea - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmPointArea(ModelImage, int, int, int, int, boolean, boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPointArea: Creates a new AlgorithmPointArea object.
AlgorithmPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
AlgorithmPowellOpt2D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 2D image.
AlgorithmPowellOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmPowellOpt3D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 3D image.
AlgorithmPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmPowellOptBase - Class in gov.nih.mipav.model.algorithms: Powell's Method
AlgorithmPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
AlgorithmPowerWatershed - Class in gov.nih.mipav.model.algorithms: This is a port of C code written by Camille Couprie in 2009.
AlgorithmPowerWatershed(ModelImage, ModelImage, int, Vector<Integer>, Vector<Short>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed: Constructs Power watershed algorithm.
AlgorithmPowerWatershed.Lifo - Class in gov.nih.mipav.model.algorithms
AlgorithmPowerWatershed.Rbt - Class in gov.nih.mipav.model.algorithms
AlgorithmPowerWatershed.RbtElt - Class in gov.nih.mipav.model.algorithms
AlgorithmPrincipalComponents - Class in gov.nih.mipav.model.algorithms: This algorithm operates on 3D black and white images and on 2D and 3D color images.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, ModelImage, boolean, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmProstateBoundaryExt - Class in gov.nih.mipav.model.algorithms.filters: This algorithm traces the prostate boundary from the target image, non prostate binary mask image and prostate boundary binary mask image.
AlgorithmProstateBoundaryExt(ModelImage, ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Constructor
AlgorithmProstateBoundaryExt.Edge - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmProstateBoundaryExt.PointAttribute - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmProstateBoundaryFeature2D - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateBoundaryFeature2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeatures - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Creates a new AlgorithmHaralickTexture object for color image.
AlgorithmProstateFeatures2D - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateFeatures2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeaturesSaveAutoTrain - Class in gov.nih.mipav.model.algorithms.filters: This class save the Coherence Enhanced Diffusion (CED) 2D slice based features, which are Hurst index and Haralick features.
AlgorithmProstateFeaturesSaveAutoTrain(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Constructor.
AlgorithmQuadraticFit - Class in gov.nih.mipav.model.algorithms: Approximate a set of points by a quadric surface.
AlgorithmQuadraticFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Fit a set of 3D points with a quadric surface.
AlgorithmQuantify - Class in gov.nih.mipav.model.algorithms: Quantify image data based on a mask image.
AlgorithmQuantify(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuantify: Creates a new AlgorithmQuantify object.
AlgorithmQuantifyMask - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that does basic calculations on Mask images (boolean/ubyte/short) calculates Center of Mass, area (in resolutions), and number of pixels per mask
AlgorithmQuantifyMask(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask: Creates a new AlgorithmMask object.
AlgorithmQuinticLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 5 which interpolates a given function f at the points x(-2), x(-1), x(0), x(1), x(2), and x(3) and is given by p(x) = sum from i = -2 to i = 3 of li(x)*f(xi), where li, i = -2,-1,0,1,2,3 which are called the fundamental polynomials, are given by li(x) = product from k = -2 to k = 3 for k !
AlgorithmQuinticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: AlgorithmQuinticLagrangian - default constructor.
AlgorithmRandSliceOrder - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that randomizes the order of 3D dataset.
AlgorithmRandSliceOrder(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Constructs an algorithm object that randomizes the order of 3D image dataset.
AlgorithmRandSliceOrder(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Constructs an algorithm object that randomizes the order of 3D image dataset.
AlgorithmRegBSpline - Class in gov.nih.mipav.model.algorithms.registration: This is a common base class which provides common methods and data members for all BSpline based registration.
AlgorithmRegBSpline(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Constructor.
AlgorithmRegBSpline.Options - Class in gov.nih.mipav.model.algorithms.registration: Data structure which contains the parameters or options used to perform a BSpline based registration of two images.
AlgorithmRegBSpline25D - Class in gov.nih.mipav.model.algorithms.registration: BSpline based registration of 2.5D images.
AlgorithmRegBSpline25D(ModelImage, ModelImage, int, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Constructor.
AlgorithmRegBSpline2D - Class in gov.nih.mipav.model.algorithms.registration: BSpline based registration of 2D images.
AlgorithmRegBSpline2D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: Constructor.
AlgorithmRegBSpline3D - Class in gov.nih.mipav.model.algorithms.registration: BSpline registration of 3D images.
AlgorithmRegBSpline3D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: Constructor.
AlgorithmRegChamfer - Class in gov.nih.mipav.model.algorithms.registration: AlgorithmRegChamfer First slice is template (base image) to which match image is registered.
AlgorithmRegChamfer(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Constructs a new registration algorithm.
AlgorithmRegChamfer(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Constructs new registration algorithm.
AlgorithmRegChamfer.CostFunction - Class in gov.nih.mipav.model.algorithms.registration: Class for specifying optimization function for AlgorithmSimplexOpt.
AlgorithmRegELSUNCOAR25D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR25D(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR25D(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmRegELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegionGrow - Class in gov.nih.mipav.model.algorithms: Fills a region based on average intensity +or- standard deviation.
AlgorithmRegionGrow(ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Creates a new AlgorithmRegionGrow object.
AlgorithmRegionGrow(ModelImage, ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Creates a new AlgorithmRegionGrow object.
AlgorithmRegionMergingViaBoundaryMelting - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionMergingViaBoundaryMelting(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting: Creates a new AlgorithmRegionMergingViaBoundaryMelting object.
AlgorithmRegionMergingViaBoundaryMelting.mergeItem - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionsFromPartialBorders - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionsFromPartialBorders(ModelImage, ModelImage, double, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders: Creates a new AlgorithmRegionsFromPartialBorders object.
AlgorithmRegLeastSquares - Class in gov.nih.mipav.model.algorithms.registration: "Least-Squares Fitting of 2 3-D Point Sets", K.
AlgorithmRegLeastSquares(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: AlgorithmRegLeastSquares - Constructor.
AlgorithmRegLeastSquares(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: AlgorithmRegLeastSquares - Constructor.
AlgorithmRegOAR25D2 - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR25D2(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR25D2(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR2D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR35D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmRegOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegPatientPos - Class in gov.nih.mipav.model.algorithms.registration: Use origin and image orientations to align images based on patient position.
AlgorithmRegPatientPos(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Creates new algorithm.
AlgorithmRegularizedIsotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply Regularized Isotropic Nonlinear Diffusion as described by:
AlgorithmRegularizedIsotropicDiffusion(ModelImage, ModelImage, int, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Creates a new AlgorithmRegularizedIsotropicDiffusion object.
AlgorithmRegValidation - Class in gov.nih.mipav.model.algorithms.registration: Uses a selected RegistrationMeasure and the user-specified points to output the relevant measure back to the user.
AlgorithmRegValidation(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: AlgorithmRegValidation - Constructor.
AlgorithmRegValidation(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: AlgorithmRegValidation - Constructor.
AlgorithmRegVOILandmark - Class in gov.nih.mipav.model.algorithms.registration: AlgorithmRegVOILandmark First slice is template (base image) to which subsequent slices are registered.
AlgorithmRegVOILandmark(ModelImage, ModelImage, float[], boolean, VOIBase, double, double, double, double, double, double, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: Constructor.
AlgorithmRegVOILandmark.CostFunction - Class in gov.nih.mipav.model.algorithms.registration: CostFunction - class for specifying optimization function for AlgorithmSimplexOpt slice - current fluoroscopy slice being operated on.
AlgorithmRemoveSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm verifies the z-th slice should be in included in the destination image, as defined in the list, remove.
AlgorithmRemoveSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Import source and destination images into the class.
AlgorithmRemoveTSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to run the remove T slices.
AlgorithmRemoveTSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: import source and destination images into the class.
AlgorithmReplaceBlankSlicesWithAverages - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmReplaceBlankSlicesWithAverages(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceBlankSlicesWithAverages: Creates a new AlgorithmReplaceSlice object.
AlgorithmReplaceRemovedSlices - Class in gov.nih.mipav.model.algorithms.utilities: This algorithm is used to insert averaged slices where slices have been removed -If slices were removed at the beginning of the original movie, these slices will not be replaced. - Slices are only inserted between the first and last kept slices
AlgorithmReplaceRemovedSlices(ModelImage, boolean[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Constructor for algorithm.
AlgorithmReplaceSlice - Class in gov.nih.mipav.model.algorithms.utilities: DOCUMENT ME!
AlgorithmReplaceSlice(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice: Creates a new AlgorithmReplaceSlice object.
AlgorithmReplaceValue - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmReplaceValue
AlgorithmReplaceValue(ModelImage, ModelImage, Vector<JDialogReplaceValue.Values>, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Default contructor.
AlgorithmReslice - Class in gov.nih.mipav.model.algorithms.utilities: Reslices 3D image into (isotropic)cubic voxels.
AlgorithmReslice(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Creates new algorithm for reslicing to isotropic voxels.
AlgorithmRGBConcat - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that generates an RGB image from three gray images.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBtoGray - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a single greyscale image.
AlgorithmRGBtoGray(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGrays - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a red, green, and blue greyscale images.
AlgorithmRGBtoGrays(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Creates a new AlgorithmRGBtoGrays object.
AlgorithmRGBtoHSB - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a hue, saturation and brightness greyscale images.
AlgorithmRGBtoHSB(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Creates a new AlgorithmRGBtoHSB object.
AlgorithmRiceWaveletTools - Class in gov.nih.mipav.model.algorithms.filters: This "rice-wlet-tools", version 2.4 Released - CONDITIONS FOR USE: Copyright (c) 2000 RICE UNIVERSITY.
AlgorithmRiceWaveletTools() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, double[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools.EigenvalueComplex - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmRiceWaveletTools.EigenvalueComplexComparator - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmRotate - Class in gov.nih.mipav.model.algorithms.utilities: An Algorithm to rotate 3D or 4D dataset 90 or 180 degrees about X, Y, or Z axis. 2D Images can also be rotated.
AlgorithmRotate(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRotate(ModelImage, int[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRotate(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRuleBasedContrastEnhancement - Class in gov.nih.mipav.model.algorithms.filters: This algorithm uses an equation with 3 membership functions, udark, ugray, and ubright, to transform a gray level g to a new gray level g' for histogram enhancement.
AlgorithmRuleBasedContrastEnhancement(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Constructor for images in which changes are returned to the source image.
AlgorithmRuleBasedContrastEnhancement(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmScaleSaliency - Class in gov.nih.mipav.model.algorithms: Original source code in C and MATLAB is Copyright 1998-2004 by Timor Kadir Version 1.5 Kadir/Brady Feature detector (Scale Saliency) Code For non-commercial use only Ported by to Java by William Gandler References: 1.)
AlgorithmScaleSaliency() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency: AlgorithmScaleSaliency - default constructor.
AlgorithmScaleSaliency(ModelImage, int, int, int, int, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
AlgorithmScaleSaliency.sixItems - Class in gov.nih.mipav.model.algorithms
AlgorithmScaleSaliency.sixItemsComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSCDSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmSCDSegmentation(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation
AlgorithmSeparableConvolver - Class in gov.nih.mipav.model.algorithms: Convolves an image with a separable (symmetric) kernel and returns the result.
AlgorithmSeparableConvolver(float[], int[], float[][], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Sets destination, source, and kernel buffers.
AlgorithmSeparableConvolver(float[], int[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
AlgorithmSequentialScanningWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmSequentialScanningWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
AlgorithmSequentialScanningWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSequentialScanningWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmSFTA - Class in gov.nih.mipav.model.algorithms
AlgorithmSFTA(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSFTA
AlgorithmShortestPathWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmShortestPathWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
AlgorithmShortestPathWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmShortestPathWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmSimulatedExposureFusion - Class in gov.nih.mipav.model.algorithms
AlgorithmSimulatedExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
AlgorithmSimulatedExposureFusion(ModelImage, ModelImage, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
AlgorithmSingleMRIImageSNR - Class in gov.nih.mipav.model.algorithms: This program uses a mandatory signal 1 VOI, an optional signal 2 VOI, a mandatory noise background VOI, and the number of NMR receivers to calculate the signal to noise ratio for the signal VOI(s).
AlgorithmSingleMRIImageSNR(ModelImage, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: Creates a new AlgorithmSingleMRIImageSNR object.
AlgorithmSkullRemoval - Class in gov.nih.mipav.model.algorithms: Algorithm Implementation 1.
AlgorithmSkullRemoval(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Automatic DeSkulling initialization.
AlgorithmSkullRemoval(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Automatic DeSkulling initialization.
AlgorithmSliceAveraging - Class in gov.nih.mipav.model.algorithms.filters: This algorithm averages together slices of a 3D image.
AlgorithmSliceAveraging(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Creates a new AlgorithmSliceAveraging object.
AlgorithmSliceAveraging(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Creates a new AlgorithmSliceAveraging object.
AlgorithmSM2 - Class in gov.nih.mipav.model.algorithms: Based on the document provided by Daniel Reich: Notes on DCE with SM2 (standard model, aka Tofts model, 2-compartment) 3 model parameters are fit for each voxel in 3D: 1) K_trans in [1.0E-5, 5.0] in /min On input ktrans is converted from /min to /sec and on output ktrans is converted from /sec to /min. 2) ve in [1.0E-5, 0.99] 3) f_vp in [0, 0.99] srcImage is a dynamic "4D volume" of MRI signal (3D over time).
AlgorithmSM2(ModelImage[], ModelImage, double[], double[], double[], ModelImage, double[], double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2: Creates a new AlgorithmDEMRI3 object.
AlgorithmSM2.FitAll - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitAllEP - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitAllNL2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2ConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2ConstrainedModelC - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2nl2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.Integration2All - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.Integration2EPAll - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.IntModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.sm2Task - Class in gov.nih.mipav.model.algorithms
AlgorithmSnake - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm deriviative.
AlgorithmSnake(ModelImage, float[], int, float, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSnake: Set up the snake algorithm so that it can be run.
AlgorithmSobel - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmSobel(ModelImage, ModelImage, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
AlgorithmSpectralClustering - Class in gov.nih.mipav.model.algorithms
AlgorithmSpectralClustering(ModelImage, double[][], double[], int[], double[][], String, float[], float[], float[], double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
AlgorithmSphereGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned spheres with a specified radius.
AlgorithmSphereGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: AlgorithmSphereGeneration - default constructor.
AlgorithmSphereGeneration(ModelImage, int, int, int, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: AlgorithmRandomSphereGeneration.
AlgorithmSphereGeneration.IntModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMeanSquared - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMeanSquared2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquatoModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquatoModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed(ModelImage, ModelImage, int, boolean, int, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
AlgorithmSplitAndMergeWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmStandardDeviationThreshold - Class in gov.nih.mipav.model.algorithms: The Standard Deviation Threshold works by first having an active VOI in which the standard deviation and other statistics are calculated.
AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: constructor for grey scale image
AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: constructor for color image
AlgorithmSubsample - Class in gov.nih.mipav.model.algorithms.utilities: Takes in an image and subsamples it to a new set of dimensions.
AlgorithmSubsample(ModelImage, ModelImage, int[], int[], float[], boolean, boolean, TransMatrix, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Setup for a later subsampling of an image.
AlgorithmSubset - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to create a 3D subset image from a 4D image.
AlgorithmSubset(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: import source and destination images into the class.
AlgorithmSubtractVOI - Class in gov.nih.mipav.model.algorithms: Algorithm that subtracts the mean or median value of a VOI from the image.
AlgorithmSubtractVOI(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Creates a new AlgorithmSubtractVOI object.
AlgorithmSubtractVOI(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Creates a new AlgorithmSubtractVOI object.
AlgorithmSwap34 - Class in gov.nih.mipav.model.algorithms.utilities: Swaps third and fourth dimensions in 4D dataset.
AlgorithmSwap34(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34: Constructs new algorithm and sets source.
AlgorithmSwapDims - Class in gov.nih.mipav.model.algorithms.utilities: Swaps dimensions in 4D dataset.
AlgorithmSwapDims(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims: Constructs new algorithm and sets source.
AlgorithmSwapSlicesVolume - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmSwapSlicesVolume
AlgorithmSwapSlicesVolume(ModelImage, JDialogSwapSlicesVolumes.SwapMode, int[][], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Import source and destination images into the class.
AlgorithmSWI - Class in gov.nih.mipav.model.algorithms.filters: This class recalculates mo and dceFullTre to provide better estimates using the inverse Ernst equation
AlgorithmSWI(boolean, ModelImage, ModelImage, ModelImage, double, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Constructor.
AlgorithmSymmetricNearestNeighbor - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmSymmetricNearestNeighbor(ModelImage, ModelImage, boolean, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
AlgorithmTalairachTransform - Class in gov.nih.mipav.model.algorithms: Performs original to ACPC, original to Talairach, ACPC to original, ACPC to Talairach, Talairach to original, or Talairach to ACPC transformation.
AlgorithmTalairachTransform(ModelImage, ModelImage, TalairachTransformInfo, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Creates a new AlgorithmTalairachTransform object.
AlgorithmTamuraTexture - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmTamuraTexture(ModelImage[], ModelImage, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Creates a new AlgorithmTamuraTexture object for black and white image.
AlgorithmTamuraTexture(ModelImage[], ModelImage, int, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Creates a new AlgorithmTamuraTexture object for color image.
AlgorithmTextureAnalysis - Class in gov.nih.mipav.model.algorithms: Overview This code contains the texture analysis functions for the paper `Texture Analysis and Segmentation Using Modulation Features, Generative Models, and Weighted Curve Evolution', by I.
AlgorithmTextureAnalysis(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
AlgorithmTextureSegmentation - Class in gov.nih.mipav.model.algorithms: This software implements the factorization-based segmentation algorithm.
AlgorithmTextureSegmentation(ModelImage, ModelImage, int, int, Vector3f[], BitSet, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
AlgorithmThinning2D - Class in gov.nih.mipav.model.algorithms
AlgorithmThinning2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D: AlgorithmThinning2D - default constructor.
AlgorithmThinning2D(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D
AlgorithmThresholdDual - Class in gov.nih.mipav.model.algorithms: This algorithm has two modes of operation:
AlgorithmThresholdDual(ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Creates a new AlgorithmThresholdDual object.
AlgorithmThresholdDual(ModelImage, ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Creates a new AlgorithmThresholdDual object.
AlgorithmThresholdDualRGB - Class in gov.nih.mipav.model.algorithms: Runs threshold (lower and upper) on color images and replaces values either outside (inverse) or inside (normal) with the fill values specified.
AlgorithmThresholdDualRGB(ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Default constructor for running algorithm on and modifying source image.
AlgorithmThresholdDualRGB(ModelImage, ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Default constructor for running algorithm into a destination image.
AlgorithmTiltCorrection - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmTiltCorrection(ModelImage, ModelImage, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
AlgorithmTimeFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Creates a new AlgorithmTimeFitting object.
AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[], boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Creates a new AlgorithmTimeFitting object.
AlgorithmTimeFitting.FitExponential - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitGaussian - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLaplace - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLine - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLorentz - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitMultiExponential - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitRayleigh - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.fittingTask - Class in gov.nih.mipav.model.algorithms
AlgorithmTProcess - Class in gov.nih.mipav.model.algorithms: This abstract class defines terms common to both T1 and T2 processing, such as thresholding and multithreading management methods.
AlgorithmTProcess() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
AlgorithmTProcess(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
AlgorithmTProcess.CalculateT - Class in gov.nih.mipav.model.algorithms
AlgorithmTPSpline - Class in gov.nih.mipav.model.algorithms: Thin plate spline Warning: If the supplied (x,y) data set in setupTPSpline2D is nearly collinear, singular matrices will result and a matrix inversion will fail.
AlgorithmTPSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - default constructor.
AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 3D case.
AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 3D case.
AlgorithmTPSpline(double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 2D case.
AlgorithmTPSpline(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: Constructor used when N, xDimA, yDimA, zDimA, x[], y[], z[], and C[][] are read from a file
AlgorithmTranscode - Class in gov.nih.mipav.model.algorithms: Title:
AlgorithmTranscode(URL, String, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTranscode: Creates a new AlgorithmTranscode object.
AlgorithmTransform - Class in gov.nih.mipav.model.algorithms: Transforms Volume by resampling using transformation matrix and the choice of nearest-neighbor, trilinear interpolation, 3rd order Bspline, 4th order Bspline, cubic Lagrangian, quintic Lagrangian, heptic Lagrangian, or windowed sinc.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: 3D constructor for transformation algorithm.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new $class.name$ object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new $class.name$ object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: 2D constructor for transformation algorithm.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new AlgorithmTransform object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new AlgorithmTransform object.
AlgorithmTransformBSpline - Class in gov.nih.mipav.model.algorithms: TransformBSpline algorithm This algorithm takes a source image and uses information read in from a .nlt file to perform a nonlinear B-Spline transformation on the image.
AlgorithmTransformBSpline(ModelImage, float[], int[], int, int, float[][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: AlgorithmTransformBSpline - Constructor.
AlgorithmTransformBSpline(ModelImage, float[], int, int, float[][][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: AlgorithmTransformBSpline - Constructor.
AlgorithmTransformVOI - Class in gov.nih.mipav.model.algorithms
AlgorithmTransformVOI(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
AlgorithmTreParams - Interface in gov.nih.mipav.view.dialogs: This interface contains convenience enumerations for going between the dialog and algorithm of the TRE framework.
AlgorithmTreParams.FieldStrength - Enum in gov.nih.mipav.view.dialogs: Specifies the magnetic field strength of the scanner used.
AlgorithmTreParams.InversionType - Enum in gov.nih.mipav.view.dialogs: Specifies the inversion method used for the scan.
AlgorithmTreParams.ScannerType - Enum in gov.nih.mipav.view.dialogs: Designates the brand of scanner used for processing.
AlgorithmTreParams.Threshold - Enum in gov.nih.mipav.view.dialogs: A three way boolean operator to designate the thresholding option used.
AlgorithmTreT1 - Class in gov.nih.mipav.model.algorithms: This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
AlgorithmTreT1(double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
AlgorithmTreT1(ModelImage, ModelImage, double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
AlgorithmTreT1.CalculateT1 - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT2 - Class in gov.nih.mipav.model.algorithms: This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
AlgorithmTreT2(ModelImage, ModelImage, JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
AlgorithmTreT2(JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
AlgorithmTrilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of openCVtrilateralFilter.h and openCVtrilateralFilter.cpp written by Tobi Vaudrey.
AlgorithmTrilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
AlgorithmTrilateralFilter(ModelImage, ModelImage, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
AlgorithmTwoMRIImagesSNR - Class in gov.nih.mipav.model.algorithms: This module implements the National Electrical Manufacturers Association (NEMA) standard for SNR estimation in diagnostic MRI.
AlgorithmTwoMRIImagesSNR(ModelImage, ModelImage, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: Creates a new AlgorithmTwoMRIImagesSNR object.
AlgorithmUnionFindComponentLabelling - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindComponentLabelling(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
AlgorithmUnionFindWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
AlgorithmUnionFindWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmUnsharpMask - Class in gov.nih.mipav.model.algorithms.filters: Calculates the Unsharp Mask of an image at a scale defined by the user ( unsharp image = original image - weight * blurred image); weight
AlgorithmUnsharpMask(ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: Constructor.
AlgorithmUnsharpMask(ModelImage, ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: Constructor.
AlgorithmVesselEnhancement - Class in gov.nih.mipav.model.algorithms
AlgorithmVesselEnhancement(ModelImage, ModelImage, double[][], double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
AlgorithmVOIExtraction - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmVOIExtraction(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Creates a new AlgorithmVOIExtraction object.
AlgorithmVOIExtractionPaint - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmVOIExtractionPaint(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Constructor for finding the borders of the paint on various slices of an image.
AlgorithmVOIExtractionPaint(ModelImage, BitSet, int, int, int, short) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Construct the extractor for paint extraction to a VOI.
AlgorithmVOIHausdorffDistance - Class in gov.nih.mipav.model.algorithms: Algorithm class for finding Hausdorff distance on 2 VOIs
AlgorithmVOIHausdorffDistance(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance: constructor
AlgorithmVOILogicalOperations - Class in gov.nih.mipav.model.algorithms: Algorithm class for performing logical operations on VOIs
AlgorithmVOILogicalOperations(ModelImage, ViewVOIVector, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: constructor
AlgorithmVOIProps - Class in gov.nih.mipav.model.algorithms: This class calculates a properties of an image defined by a VOI.
AlgorithmVOIProps(ModelImage, int, JPanelPixelExclusionSelector.RangeType, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor. note that if there are no VOIs to act on, this constructor returns quietly.
AlgorithmVOIProps(ModelImage, int, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor.
AlgorithmVOIProps(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor. sets the source image of the algorithm, and presets the algorithm to calculate properties of 3D images as a volume of interest, rather than by slice.
AlgorithmVOIProps.Calc34D - Class in gov.nih.mipav.model.algorithms
AlgorithmVOIProps.Calc34D.ContourStats - Class in gov.nih.mipav.model.algorithms: Stores the statistics for a single contour, color or grayscale.
AlgorithmVOIShapeInterpolation - Class in gov.nih.mipav.model.algorithms
AlgorithmVOIShapeInterpolation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: constructor
AlgorithmVOIShapeInterpolation(ModelImage, int, VOIContour, int, VOIContour, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: constructor
AlgorithmVOISimplexOpt - Class in gov.nih.mipav.model.algorithms: Perform Simplex Optimization on a VOI that has been propagated to a slice to find a transformation which will make an affine "fit" a structure which the VOI fit on the previous slice (used in RFASegTool when propagating liver segmentation VOIs).
AlgorithmVOISimplexOpt(ModelImage, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Set up the algorithm to perform optimizations on an image.
AlgorithmVOISimplexOpt(ModelImage, VOIContour, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Set up the algorithm to perform optimizations on an image.
AlgorithmVOISimplexOpt.CostFunction - Class in gov.nih.mipav.model.algorithms: Class for specifying optimization function for the simplex opt algorithm.
AlgorithmWatershed - Class in gov.nih.mipav.model.algorithms: This program applies the watershed algorithm to the image.
AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Constructs new watershed algorithm.
AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Constructs new watershed algorithm.
AlgorithmWatershed.Seed - Class in gov.nih.mipav.model.algorithms: Simple class to hold seed point and basin (object label) value.
AlgorithmWaveletFuse - Class in gov.nih.mipav.model.algorithms.filters: MIT License Copyright (c) 2021 Hans Brouwer, Riyo Wanagiri Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
AlgorithmWaveletFuse() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
AlgorithmWaveletFuse(ModelImage, ModelImage, ModelImage, int, PyWavelets.WAVELET_NAME[], int[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
AlgorithmWaveletThreshold - Class in gov.nih.mipav.model.algorithms.filters: In hard thresholding a wavelet coefficient whose magnitude is below the product of threshold and the maximum wavelet magnitude is zeroed, and a wavelet coefficient whose magnitude is greater than or equal to the product is left unchanged.
AlgorithmWaveletThreshold(ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Creates a new AlgorithmWaveletThreshold object.
AlgorithmWaveletThreshold(ModelImage, ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Creates a new AlgorithmWaveletThreshold object.
AlgorithmWSinc - Class in gov.nih.mipav.model.algorithms: Sinc function windowed with Hanning window function used for interpolation This function will create images with greater maximums and lower minimums than the original image, so if the input image type is BYTE or UBYTE, the output image type should be a SHORT.
AlgorithmWSinc() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWSinc: AlgorithmWSinc - default constructor.
algoRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
algoSelection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
algoSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
algoSepConvolver - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverB - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverG - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverR - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSub - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
algoTal - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: or if the source image is to be replaced.
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
algoTransB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
algoTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: The algorithm.
algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: handle to algorithm
algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Algorithm for computing VOI statistics
alias - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
alias - Variable in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
aliasButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Selection buttons
aliasField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
aliasField - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
aliasLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
alignAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: DOCUMENT ME!
alignmentXfrm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
AlignShapes() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Alight shapes
AlignShapes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Normalizes all shapes with respect to position, scale and orientation.
AlignTo(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Wrapper to align this to ref.
AlignTo(CAAMShape, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Aligns this to 'ref' with respect to pose.
AlignTo(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
AlignTo(CDVector, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Linear alignment of this vector to another vector using the L2 norm.
AlignTransformation(CAAMShape, double[], double[], CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the transformation that aligns this to 'ref' with respect to pose.
alim - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
alim - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
alist - Variable in class gov.nih.mipav.model.algorithms.Integration2: The left end points of the subintervals in the partition of the given integration range (lower, upper).
alist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The left end points of the subintervals in the partition of the given integration range (lower, upper).
all - Variable in class gov.nih.mipav.model.algorithms.libdt.Range
ALL - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Move all the channel transfer functions.
ALL - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Display all files.
ALL - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Move all the channel transfer functions.
all_covariance_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
ALL_READERS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
allActive - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Set to true when all contours of a VOI are active.
ALLBACKGROUNDS - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
ALLBITS - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
ALLBITS - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
allButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
allclasses - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
allFiles - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
alloc - Variable in class gov.nih.mipav.model.algorithms.KDTree
alloc_barray(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_fs_workspace(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_funny_pointers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_resnode() - Method in class gov.nih.mipav.model.algorithms.KDTree
alloc_sarray8(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_sarray9to12(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
allocate_edge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_face_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_halfedge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_vertex_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODE
allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODEEP
allocateCompressStructures() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
allocateData() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Allocates data based on the data type and dataSize.
allocateElement() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter: Allocates a new element for the PixelConvertingSpliterator (will be called once per split)
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
allocateMemory(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Method that actually allocates the memory.
AllocateMemory() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
allocateTemporaryBufferInterleaved(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
allocateTemporaryBufferPlanar(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
AllocateUserFields() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Allocates room for the three user defined fields.
Allocator<T> - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Allocator() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
AllocatorState - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AllocatorState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AllocatorState
allowableBlockSize - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
allowChangesMinMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: allow changes to the min and max boundaries *
allowChangesWin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: allow changes to the window and level boundaries *
allowDataWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: If true, allow data window output
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowPaddedWarping - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
allPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: true if no slices are missing.
allRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
allRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
allSeamCellIDs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
allSlices - Variable in class gov.nih.mipav.model.structures.VOIProtractor: Set to true, displays this protractor object for any z-value.
allSlicesRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
allSlicesTouched() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume
allTimes - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ALLTREEA - Static variable in class gov.nih.mipav.view.JPanelTreeController
ALLTREEB - Static variable in class gov.nih.mipav.view.JPanelTreeController
AllTripletsWithinBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
allVOIBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
allVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation for all volumes
allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
allz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
allz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
alnrel(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
aLog - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
aloneMenu - Variable in class gov.nih.mipav.view.ViewUserInterface: Stores all stand-alone menus that have been created by the user.
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion: Original code from dispersionMap.m, multiscaleBlending.m, remapFun.m, robustNormalization.m, runsef.m, and sef.m located at https://github.com/chlsl/simulated-exposure-fusion-ipol was written by Charles Hessel and is being ported to Java with his permission.
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
alpha - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
alpha - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: The structure sensitive parameter
alpha - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
alpha - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.decision_function
alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.algorithms.ODE
alpha - Variable in class gov.nih.mipav.model.algorithms.ODEEP
alpha - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
alpha - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
alpha - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: alpha channel
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Structure sensitive parameter
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Alpha smoothing factor.
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm.decision_function
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
ALPHA - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The alpha channel transfer function.
alpha_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
alpha_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
alpha_sq_norm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
alpha_status - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
alpha_status - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
alphaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: arrays of 12 values used for Talairach conversions.
alphaBlend - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: AlphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: AlphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Indicates the amount of blending when two images are loaded in the image frame.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: alphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: alphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Value used to control the display when compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameBase: Indicates the amount of blending when two images are loaded in the image frame.
alphaBright - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
alphaBright - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
alphaDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
alphaDim - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
alphaLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Fucntion that attenuates image values.
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
alphaPrime - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: AlphaBlending values for compositing two images.
alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Value used to control the display when compositing two images.
alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Alpha blend slider.
alphaSlider - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
alphaText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Text field for getting alpha smoothing factor.
alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alsoAcpc - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
alsoOrig - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
altBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
altCommand - Variable in enum gov.nih.mipav.view.Argument.InstanceArgument: Alternate commands for a given action
altCommand - Variable in enum gov.nih.mipav.view.Argument.StaticArgument: Alternate commands for a given action
AlternateLinearSolverAndPreconditionerForSchurTypeLinearSolver(CeresSolver.SolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
alternateRowCount - Variable in class gov.nih.mipav.view.AlternatingTableCellRenderer: DOCUMENT ME!
AlternatingTableCellRenderer - Class in gov.nih.mipav.view: Title: AlternatingTableCellRenderer
AlternatingTableCellRenderer() - Constructor for class gov.nih.mipav.view.AlternatingTableCellRenderer: Creates a new AlternatingTableCellRenderer object.
altPressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
altTimeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeDicomTag - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeTag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
altTimeTagField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeTagLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
always_split_variable_names - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
AmAl() - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
aMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: The colors associated with the light, typically all white.
ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial: DOCUMENT ME!
AMBIENT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Define attenuation lighting colors.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Attenuation lighting setup.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Ambient, emissive, sepcualar, diffuse color is used for the attenuation lighting.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Attenuation lighting setup.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Attenuation lighting colors.
ambientRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Radio button for different light type.
ambientRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Radio button for different light type.
Ami - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
Amj - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
amp - Variable in class gov.nih.mipav.model.algorithms.FitGaussian: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
amp_max - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
amp_min - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
ampFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationIndex - Variable in class gov.nih.mipav.model.file.FileInfoZVI
amplitude - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
AN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
Analysis(double[], double[], String, String, String, int, String, double, boolean, boolean, String, String, String, String) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
analysisGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
analyticContinuationUsed - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: If false, function used If true, analytic continuation of function used.
analyticJacobian - Variable in class gov.nih.mipav.model.algorithms.NESolve
Analyze(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Warpper to analyze the image.
Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyze image.
Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: This method samples the image intensities under a user-supplied shape into a texture vector.
Analyze(CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Warpper to analyze the image.
Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyze image
Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: This method samples the image intensities under a user-supplied shape into a texture vector.
ANALYZE - gov.nih.mipav.model.algorithms.SIFT3D.im_format
ANALYZE - Static variable in class gov.nih.mipav.model.file.FileUtility: Analyze format (Mayo). extension: .img, .hdr
ANALYZE_AUX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_AXIS_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_CAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DATATYPE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DBNAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DESCRIPTION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyze_dst_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ANALYZE_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type analyze.
ANALYZE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_ORIGINATOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyze_src_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ANALYZE_VOX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyzeFile - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Radio button to indicate that an analyze img file should be written out.
AnalyzeTest(CAAMShape, CAAMShape, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Benchmarks the software warping method against the OpenGL.
ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: funcType for anatType == true.
ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: funcType for anatType == true.
anatomicalRef - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 84 - 3 bytes - Anatomical Reference.
anatomyParentnameString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
anatType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
anchor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
anchor(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the livewire contour.
anchor(Point) - Method in class gov.nih.mipav.view.Rubberband: Anchors the rubberband to this point.
anchor(Point) - Method in class gov.nih.mipav.view.RubberbandLivewire: Calls seed on this point to set up costGraph array; then anchors point.
anchorBSpline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the BSpline line contour.
anchorPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
anchorPolyline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the poly line contour.
AnchorPosition() - Constructor for enum gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
anchorPt - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
anchorPt - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
and - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: radio button
AND - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
andButton - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
andTable - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
angioFlag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
angle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
angle - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureOrientation
angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc
angle - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.polygon
angle - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
angle(double[], boolean[], int[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
angle(float[], float[], float[]) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the angle between two lines.
angle(LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
angle(Point3, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
Angle(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
ANGLE - gov.nih.mipav.model.file.FileInfoBase.UnitType
ANGLE7(double[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AngleAxisNearZeroRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
AngleAxisRotatePoint(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
AngleAxisRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
AngleAxisToQuaternion(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
AngleAxisToRotationMatrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
angleIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
angleIncrement - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
ANGLES(int, double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
anglesRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
anglesRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
ANGSTROMS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement angstroms.
ANGSTROMS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement angstroms.
ANGSTROMS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - angstroms.
angulationCorrection(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
animate() - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Invoke the animation frame.
Animate() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
animateAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
animateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animateCheckerboard() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
animateCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateLatticeModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateLattices - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
animateStop - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateThread - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animateTime - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animating - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animationFrame - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
animationThread - Variable in class gov.nih.mipav.view.LineMeter: monitor animation happens in its own thread.
aniSampleRate - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
anisotropyBrowseButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
anisotropyBuffer - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy file data buffer *
anisotropyFilename - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: names of eigenvector and anisotropy files*
anisotropyFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: names of eigenvector and anisotropy files*
anisotropyImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy src image *
anisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy src image *
anisotropyLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
anisotropyMax - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy max *
anisotropyMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy max *
anisotropyMax - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy max *
anisotropyMaxPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
anisotropyMaxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
anisotropyMaxSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
anisotropyMaxSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
anisotropyMaxTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
anisotropyMaxTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anisotropyMin - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy min *
anisotropyMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy min *
anisotropyMin - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy min *
anisotropyMinPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
anisotropyMinPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
anisotropyMinSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
anisotropyMinSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
anisotropyMinTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
anisotropyMinTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anisotropyPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anlerr(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
annimationSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
annotatePtsCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: number of annotate points along the specified path.
annotatePtsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: annotate path planning points list
annotateVideos() - Method in class gov.nih.mipav.model.algorithms.libdt
Annotation - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ANNOTATION - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type ANNOTATION for adding text annotations to an image.
ANNOTATION - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in annotation VOI mode
annotationAnimationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationChanged() - Method in interface gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.AnnotationListener: AnnotationListeners are updated whenever annotations change in the LatticeModel.
annotationChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationChanged(VOI, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationDiameters - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationGroupList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationGroupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationGroupTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
annotationLabelsDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
AnnotationListener - Interface in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
annotationListeners - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationListPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationNextButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationPrefix - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationPrefix() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationPrevButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
annotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
annotationSpheres - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
AnnotationSplineControlPts() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
annotationsStraight - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML: DOCUMENT ME!
annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
annotationVOI - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationVOIsUpdate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
ANON_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
anonDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
anonymizationComplete(JDialogAnonymizeDirectory.AnonymizeDicomDirectories) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: A psuedo-event-handler.
anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X
anonymize(boolean[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Removes requested identifying info.
anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: removes any and all personal information in the info that a doctor, patient, researcher may want to have deleted from the image, such as patient name or patient ID number--from this slice given by this fileInfoDicom.
anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Anonymize the image by altering the sensitive data of each slice to something generic.
anonymize(boolean[], boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: New version of anonymize that allows you to replace the original tag value with a blank string or zero depending on the data type.
anonymizeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
AnonymizeDicomDirectories(File[], File, String, int, int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: sets up the anonymizer thread.
anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Find face, blur face, commit, or cancel based on which buttons in the dialog are pressed.
anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Executes the de-facing algorithm.
anonymizeImage(File, File, int[], int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: actually does the grunt-work of reading the designaated image-file, anonymizing it, and writing the file to the deisgnated destination directory.
anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize public tags that do not appear in the DICOM Supplement 55.
anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize public tags that do not appear in the DICOM Supplement 55.
anonymizer - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Access to the running thread which is anonymising directories.
anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
anonymizeTagIDs - Static variable in class gov.nih.mipav.model.file.FileInfoDicom: these are the DICOM tag ID numbers corresponding to the tags which are anonymized.
anonymousName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
aNormal - Variable in class gov.nih.mipav.model.file.FileGESigna4X
aNormal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ANOTHER_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: AC-PC: Another midsagittal reference point.
anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
anotherMidSagPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
anotherPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
anotherPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
anotherPtDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ansR - Variable in class gov.nih.mipav.model.algorithms.Statistics
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Final answer after registration.
ANTERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Anterior reference point.
anteriorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: markers used for +ACPC to +tlrc transformation.
anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
ANTI_SYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
antialiasing - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
antigradient2Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
antigradient2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
antigradient3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AntipodalCornerIndex(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
ANY_DIR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Indicates boundary can move in or out.
Aopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
ap - Variable in class gov.nih.mipav.model.file.FileZVI
apCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
apCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
aperture - Variable in class gov.nih.mipav.model.file.FileSVS
aperture - Variable in class gov.nih.mipav.model.file.FileTiff
apertureToFStop(double) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions: Converts an aperture value to its corresponding F-stop number.
apInvert - Variable in class gov.nih.mipav.model.file.FileNRRD: True for RAS and LAS, false for LPS.
APLUSBI - gov.nih.mipav.view.Preferences.ComplexDisplay: Displays complex images in a + bi format
apotomeAutoShutterUsed - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeAveragingCount - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamFilterHarmonics - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamGenericCameraName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamNormalize - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamPhaseAngles - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFilterName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFilterStrength - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFullPhaseShift - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGratingPeriod - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeProcessingMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
app0(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app0(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP0 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP0 JPEG segment identifier.
APP0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APP0_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
app1(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app1(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP1 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP1 JPEG segment identifier.
APP1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app10(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app10(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP10 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP10 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app11(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app11(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP11 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP11 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app12(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app12(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP12 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP12 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app13(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app13(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP13 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP13 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app14(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app14(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP14 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP14 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APP14_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
app15(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app15(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP15 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP15 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app2(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app2(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP2 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP2 JPEG segment identifier.
APP2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app3(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app3(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP3 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP3 JPEG segment identifier.
APP3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app4(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app4(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP4 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP4 JPEG segment identifier.
APP4 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP4 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app5(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app5(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP5 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP5 JPEG segment identifier.
APP5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app6(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app6(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP6 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP6 JPEG segment identifier.
APP6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app7(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app7(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP7 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP7 JPEG segment identifier.
APP7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app8(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app8(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP8 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP8 JPEG segment identifier.
APP8 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP8 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app9(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app9(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP9 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP9 JPEG segment identifier.
APP9 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP9 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APPA - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPA (App10) JPEG segment identifier.
APPB - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPB (App11) JPEG segment identifier.
appBody - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
APPC - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPC (App12) JPEG segment identifier.
appConeHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
appContext - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Application context PDU type.
APPD - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPD (App13) JPEG segment identifier.
AppData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.AppData
APPE - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPE (App14) JPEG segment identifier.
append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Append an element to the end of the storage array.
append(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Appends the text area with the message.
append(String) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Appends the text area with the message.
append(String, int) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Appends the text area with the message.
append(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Method to append text to an attached JTextArea (not DEBUG or DATA areas).
APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: File handler output mode - append.
appendAgePart(StringBuilder, int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
AppendArrayToString(int, double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
appendButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Button for appending selected rows to end of JTable
AppendCols(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
appendDefaultData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: appends a non editable row to the end of the primary table.
AppendDiagonal(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
AppendE(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendI(int, IDList, IDList, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
appendImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoXML: Appends a string to the image description.
appendInvestigatorData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the investigators table.
appendKey(String) - Method in class gov.nih.mipav.model.structures.CustomHashtable: Starts with a key that already exists in the hashtable and appends integers to its toString().
appendLengthTag(FileDicomTag, HashMap<Integer, FileInfoDicom.LengthStorageUnit>) - Method in class gov.nih.mipav.model.file.FileInfoDicom
appendMessage(String) - Method in class gov.nih.mipav.view.JPanelProgressBar: DOCUMENT ME!
appendMessage(String) - Method in interface gov.nih.mipav.view.ProgressBarInterface: DOCUMENT ME!
appendMessage(String) - Method in class gov.nih.mipav.view.ViewJProgressBar: Concatenates a message to the message area of the progress bar.
AppendN(LODMesh.Triangle, LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendNE(LODMesh.Edge, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendNE(LODMesh.Edge, LODMesh.NEList, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
appendParameter(String, String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row with the given parameter data to the proper set display table.
appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the editable table.
appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends a non editable row to the end of the primary table.
appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
AppendRows(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
AppendRows(CeresSolver.CompressedRowSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
AppendRows(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
appendScanData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the scan information table.
appendSecondaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the Secondary Info table.
appendSecondaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the editable table.
appendSendMessage(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Appends the text area with the message.
appendSubjectData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the subject information table.
AppendT(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
appendTagData(String, String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the tag table.
appendToFile(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
appendUserDefinedData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
AppendV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendVF(int, IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
APPF - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPF (App15) JPEG segment identifier.
appHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
AppleMakernoteDescriptor(MetadataExtractor.AppleMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
AppleMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory
AppleRunTimeMakernoteDescriptor(MetadataExtractor.AppleRunTimeMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
AppleRunTimeMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
AppleRunTimeReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeReader
AppletFrame - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
AppletFrame(String, Applet, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.AppletFrame
applicationName - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
appliedCorrections - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
APPLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
APPLY - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
apply_Affine_xyz(SIFT3D.Affine, double, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
apply_Sep_FIR_filter(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
applyACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
applyBackpropagation(Double[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Apply button is used to apply the setting of the dialog.
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Applies bounding box/shading/name display and other UI changes to ModelImage
applyButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Apply button is used to apply the setting of the dialog.
applyClipFilter(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
applyClosePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The panels that make up this Dialog
applyColorChange() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Update the color changes to the Before sphere and the original surface.
applyColorChange() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Update the color changes to the Before sphere and the original surface.
applyComponentOrientation(ComponentOrientation) - Method in class gov.nih.mipav.view.JScrollMenu
applyDefField(ModelImage, ModelImage, int, Matrix, ModelImage, int[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Creates a deformation field from the input matrix and deformation field and applies it to the input image.
applyDeformationField(int, TransMatrix, TransMatrix[], ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Applies the input B0 to T2 matrix, list of within-volume matrices and input deformation field to the 4D volume series.
ApplyForAcceptance(CAAMInitializeStegmann.CAAMInitEntry) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: Apply for acceptance of a new initialization hypothesis.
applyGenericName() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: converts the name and sequence JTextFields into native types.
applyK(double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
applyKColor(double[][][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Apply small kernel to smooth out data.
applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Apply small Gaussian kernel to smooth out data.
ApplyOrdering(HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.OrderedGroups<double[]>, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
applyppftfilter(double[][][][], double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
applyRotation(double[][], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: applySculpt: abstract function, implementation depends on whether the instance is VolumeTextureSculptor or VolumeSculptor.
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Apply the sculpt region to the volume.
applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Apply the sculpt region to the volume.
applySculpt(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Apply the sculpt region to the volume data.
applySculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Cull the sculpt region through the 3D volume.
applySculptRegion(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Cull the sculpt region through the 3D volume.
applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: false = apply algorithm only to VOI regions apply same threshold to all.
applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: false = apply algorithm only to VOI regions apply same threshold to all.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: DOCUMENT ME!
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: DOCUMENT ME!
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: DOCUMENT ME!
applyToBlueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable blue threshold.
applyToGreenBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable green threshold.
applyToRedBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable red threshold.
applyWindowLevel - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Flag to indicate to apply window level or not.
applyWorldToModelTransform(Matrix3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
applyWorldToModelTransform(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
APPN_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
approveSelection() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
ApproxExample(String, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Doing model approximation of an (unseen) example.
approximate_eigenvalue_scale_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: DOCUMENT ME!
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: DOCUMENT ME!
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Thermal probe appearance.
Aprod(int, int, int, int[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Aprod(int, int, int, int[], int[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: set to give 2 digits to the right of the decimal.
aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: set to give 2 digits to the right of the decimal.
apser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
APSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
AQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
aradd(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts two arrays of numbers, a and b, and returns the sum of the array c.
arbiMouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Mouse Rotate behavior of the arbitrary clipping plane.
arbiTG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Tranform group for arbitrary clipping plane.
arbiTrans3d - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
arbitrary_SG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane switch group.
ArbitratyEquation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
ArbRotate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Scene-graph node for rotating the arbitrary clipping plane.
ARCH_ALPHA - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an alpha system architecture.
ARCH_AMD64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an amd64 system architecture.
ARCH_ARM - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an arm system architecture.
ARCH_IA64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an ia64 (itanium) system architecture.
ARCH_MIPS - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a mips system architecture.
ARCH_PA_RISC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a PA RISC system architecture.
ARCH_PPC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a 32-bit power pc system architecture.
ARCH_PPC64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a 64-bit power pc system architecture.
ARCH_SPARC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a sparc system architecture.
ARCH_UNKNOWN - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an unknown system architecture.
ARCH_X86 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an x86 system architecture.
architecture - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry
ArcTan2(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
ArctanLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
ARCTY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
area() - Method in class gov.nih.mipav.model.structures.VOI: Finds the area of the entire VOI of the VOIContour type only.
area() - Method in class gov.nih.mipav.model.structures.VOIBase
area() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Calculate the surface mesh area.
area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
area(float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Shape area computation
area(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
area(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Returns the total area of all triangles in the mesh.
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Returns the area.
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
Area(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the total area of the shape (with holes excluded).
areaDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean
areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2
areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
areaLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The area label.
areaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The area label.
areaText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Displays the area of triangle.
areaText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Displays the area of triangle.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates twice the area (cross product of two vectors) of a triangle given three points.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Calculates twice the area (cross product of two vectors) of a triangle given three points.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Determines which side of the line a point lies on, used for determining if a point is inside or outside a closed loop.
areMultipleAllowed() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
areSiblingsSelected(TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
ARGB - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
ARGB - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
argb_bounded(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit ARGB color components into a single 32bit integer value.
argb_bounded(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
argb_fast(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit ARGB color components into a single 32bit integer value.
argb_fast(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
ARGB_FLOAT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
ARGB_FLOAT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
ARGB_FLOAT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - floats).
argb_fromNormalized(double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
argb_fromNormalized(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
ARGB_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned bytes).
ARGB_USHORT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
ARGB_USHORT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
ARGB_USHORT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned shorts).
ARGIN1(double, double, int, double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ARGUM(double, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
Argument - Interface in gov.nih.mipav.view
Argument.InstanceArgument - Enum in gov.nih.mipav.view
Argument.StaticArgument - Enum in gov.nih.mipav.view
arial13 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
arial13 - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, plain, arial font.
arial13B - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
arial13B - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, bold, arial font.
arith_ac_K - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_code - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_dc_L - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_dc_U - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_decode(libjpeg.jpeg_decompress_struct, int[]) - Method in class gov.nih.mipav.model.file.libjpeg
arith_entropy_decoder() - Constructor for class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
ARMIJO - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType
ArmijoLineSearch(CeresSolver.LineSearchOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArmijoLineSearch
armult(double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts array a and scalar b, and returns the product array c.
arrangeCTZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in CTZ order.
arrangeCZT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in CZT order.
arrangeTCZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in TCZ order.
arrangeTZC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in TZC order.
arrangeZCT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in ZCT order.
arrangeZTC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in ZTC order.
array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
array - Variable in class gov.nih.mipav.model.algorithms.CVODES.UserData
ARRAY - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
array1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
array1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
array2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
arrayCopy(double[], int, float[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a double array to a float array.
arrayCopy(float[], int, double[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a float array to a double array
ArrayIndexingOrderValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
ArrayInfo() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo
arrayLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Size of buffers (realData and imagData).
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Size of buffers (realData and imagData).
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
ArrayListTransferable(ArrayList<String>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: Creates a new ArrayListTransferable object.
ArrayListTransferHandler() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: Creates a new ArrayListTransferHandler object.
arrayLocationArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
arrayName - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB
arrayPos - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
arraySizeArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
ArraySorter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
ArraySorter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter
arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
ArrayUtil - Class in gov.nih.mipav.util: A class containing Array-related helper methods.
ArrayUtil() - Constructor for class gov.nih.mipav.util.ArrayUtil
ArrayUtilsFindInvalidIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ArrayUtilsIsArrayValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Arrow(boolean, int, int) - Constructor for class gov.nih.mipav.model.structures.TableSorter.Arrow: Creates a new Arrow object.
Arrows - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileGESigna4X
arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
arsub(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts two arrays and subtracts each element in the second array b from the element in the first array a and returns the solution c
ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Value which indicates a voxel that is part of the arterial vasculature tree.
ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Value which indicates a voxel that is part of the arterial vasculature tree.
artist - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
artist - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ARTIST - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
ARTIST - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
Arw - gov.nih.mipav.model.file.MetadataExtractor.FileType: Sony camera raw.
arydiv(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Returns the complex number resulting from the division of four arrays, representing two complex numbers.
AS - gov.nih.mipav.model.file.FileDicomTagInfo.VR
ASCENDING - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
ASCII - gov.nih.mipav.model.file.FileSVS.Type: 7 bit ASCII
ASCII - gov.nih.mipav.model.file.FileTiff.Type: 7 bit ASCII
ASCII - Static variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
ASCII - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ASCII - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
ASCII - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets
asciiFormat - Variable in class gov.nih.mipav.model.file.FileMetaImage
asciiText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
asciiTextArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
asComponent() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
asComponent() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Implicit cast of this canvas to a class extending Component.
aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
Asf - gov.nih.mipav.model.file.MetadataExtractor.FileType
ASF2PTS(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Converts AAM-API shape files (.asf) to the ISBE .pts format.
asin() - Method in class gov.nih.mipav.util.DoubleDouble: For all -1
asinh(double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
aSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Which arbitray clipping slice is currently displayed.
asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
asm - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
asm - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ASM_2D_example() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_align_data_inverse2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_align_data2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_ApplyModel2D(ModelImage, AlgorithmASM.TData, AlgorithmASM.SData, AlgorithmASM.AppData[], AlgorithmASM.Options) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_GetContourNormals2D(double[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_getProfileAndDerivatives2D(ModelImage, double[][], double[][], int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_MakeAppearanceModel2D(AlgorithmASM.ASMData[], AlgorithmASM.Options, AlgorithmASM.AppData[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_MakeShapeModel2D(AlgorithmASM.ASMData[], AlgorithmASM.SData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
asmCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
asmCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ASMData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
ASONJ7(double, double, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
asOpenGL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: hardware OpenGL synthesize, currently disabled.
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
AspectRatio() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
ASPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ASQUC7(double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
assemble_system_dirichlet(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
assemble_system_mixed(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
assert_almost_equal(double[][], double[][], int, String, String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
AssertLossFunctionIsValid(CeresSolver.LossFunction, double, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
assess(double[], int[], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
assign(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (double).
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (double).
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
assign(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator
assign(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Assign operator.
assign(CAAMMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Assignment operator.
assign(CAAMModel) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Assignment operator.
assign(CAAMOptState) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Assignment operator
assign(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Assignment operator
assign(CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Assignment operator.
assign(CAAMReferenceFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Assignment operator.
assign(CAAMReferenceFrame.sScanLinePart) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart
assign(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (CAAMShape).
assign(CAAMShapeCollection) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Assignment operator
assign(CAAMTriangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Assignment operator
assign(CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (CDMatrix).
assign(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (CVisDMatrix).
assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (CAAMShape).
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
assign(CVisRect) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
assign(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
assign(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
assign(POINT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
assign(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
assign(SIZE) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE
assign(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
assign(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
assign(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
assign(JDialogProstateSegmentationRegBSpline3D.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
assign(JDialogProstateSegmentationRegBSpline3DFast.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
assign_eig_ori(SIFT3D.Image, SIFT3D.Cvec, double, SIFT3D.Mat_rm, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assign_orientation_thresh(SIFT3D.Image, SIFT3D.Cvec, double, double, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assign_orientations(SIFT3D.SIFT3DC, SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assignCalendar(Calendar, Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Assign source Calendar to target calendar.
assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick image border.
assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick image border.
assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick borders that surround unmasked regions.
assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick borders that surround unmasked regions.
assigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick image border.
assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick image border.
assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick borders that surround unmasked regions.
assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick borders that surround unmasked regions.
assignTextons(int[][], double[][][][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
associateAC - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate accept object.
associateRJ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate reject object.
associateRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate request object.
asSoftware - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: software synthesize
asString() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns a String representation of this pixel at its current position.
assume_full_rank_ete_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
assumed_blur - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
assumed_blur - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
assumed_blurText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
ASYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
asymmetryIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
asymmetryIndexDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
aSyncSubItem - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: DOCUMENT ME!
AT - gov.nih.mipav.model.file.FileDicomTagInfo.VR
AtA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
atan() - Method in class gov.nih.mipav.util.DoubleDouble: For -1
atan2(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: The atan of this(the imaginary y component) divided by the real component x Value will range from -PI to PI.
AtAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
AtF - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
AtFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
ATLAS_AC_TO_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - anterior.
ATLAS_AC_TO_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - inferior.
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - lateral.
ATLAS_AC_TO_PC - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: AC to PC dimension.
ATLAS_AC_TO_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - superior.
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_BBOX_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - anterior.
ATLAS_BBOX_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - inferior.
ATLAS_BBOX_INF_NEW - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - inferior new. 3/06/96: extra 10 mm for cerebellum .
ATLAS_BBOX_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - lateral.
ATLAS_BBOX_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - posterior.
ATLAS_BBOX_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - superior.
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_COLLECTION - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_PC_TO_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - posterior.
atlasBasedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: atlas image:
atlasImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
atLastPos - Variable in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
attach(Socket) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Attaches this DICOMSocket to a JAVA socket.
attachChildTagTables(FileDicomTagTable[]) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Sets the list of tag tables which point to this as their reference tag table.
attachedImages - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text are for displaying the attached images
attachFileInfo(FileInfoMGH, ModelImage) - Method in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
attachmentName - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Name of the image being attached.
attachSurface(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Attach the generated surface to an image.
ATTDelaunay(double[], double[], int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
attemptLoadFromPackage(String, String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Trys to load a action's class, searching in a specific package.
attenuation - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
attenuationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: The attenuation algorithm.
attenuationBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The attenuated VOI mask buffer.
attenuationCorrection - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
ATTR_DIM_ALIGNMENT - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_DIRECTION_COSINES - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_LENGTH - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_SPACETYPE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_START - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_STEP - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_UNITS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_IMAGE_DIM_ORDER - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_IMAGE_VALID_RANGE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_INFO_SLICE_THICKNESS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_INFO_STUDY_MODALITY - Static variable in class gov.nih.mipav.model.file.FileMincHDF
attribStr - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: attribute string (for image attributes).
atv(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
ATVMFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
AUC - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
AUC_IGNORE_TIES - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
author - Variable in class gov.nih.mipav.model.file.FileInfoCZI
author - Variable in class gov.nih.mipav.model.file.FileInfoFits
AUTO_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The mode where paint grow seed points are automatically determined and chosen by the user.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Calculate the rotation matrix when the auto camera caputuring the images.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the parent autoCapture method.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the parent autoCapture method.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp: Override the parent autoCapture method to capture MIP image volume.
autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
autoCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
autoContrast - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
AutoCorrelation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the autocorrelation of the vector with a given lag (default lag is 1).
AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
autofillButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
autofillRequiredFields() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Autofill the dicom required tags to loosely fullfill the dicom standard.
autoLabel - Variable in class gov.nih.mipav.model.structures.VOIBase: Automatically generate the label, unless it is set explicitly:
autoLatticeGenerationOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileGESigna4X
autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
automatic - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
automatic - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
AUTOMATIC_ERROR_REPORTING - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
automaticCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
autoRun() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface: Causes the FlyPathBehavior to fly down the current path from start to finish and back again.
autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: One round trip path walk through.
autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: One round trip path walk through.
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
autoRunButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Auto Run Button.
autosaveMask() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
autoSequence - Variable in class gov.nih.mipav.model.file.FileNRRD: True if data file: [] encountered If true, autosequence using integer format specification varied according to , , and .
autoShrinkDomain - Variable in class gov.nih.mipav.view.ViewJFrameGraph
autoShrinkDomainCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph
autoShrinkRange - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
autoShrinkRangeCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
autoStartCBREngine - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
autoThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: If true determines the threshold by histogram analysis.
autoThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: If true, ignore srcThreshold input and calculate best value
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: If true, ignore srcThreshold input and calculate best value
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
autoXmtFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 282 Auto Center Frequency (0.1 Hz).
autoXmtGain - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 286 Auto Transmit Gain (0.1 dB).
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: DOCUMENT ME!
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: auxiliary file
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: DOCUMENT ME!
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
auxdata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
auxTechnique - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
av(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av2(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av3(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av4(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av5(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av6(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns an estimate of the number of bytes that can be read (or skipped over) from this MetadataExtractor.SequentialReader without blocking by the next invocation of a method for this input stream.
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
availableBits() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
availableBits() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
availableImageList - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: available images to concat...the ones that are open in mipav
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: available images to concat...the ones that are open in mipav
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: available images to concat...the ones that are open in mipav
aVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
Aval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
aveH - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
average - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Radio button selected if inserted slices are a weighted average of surrounding slices.
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
AVERAGE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: average
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
AVERAGE_DECON - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Average deconvolution is based on the arithmetical mean of the two estimates from A and B separately
AVERAGE_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
AVERAGE_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Average volume type - the inserted volume is set equal to the mean of the 2 surrounding volumes.
averageB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averagedImageCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
averageDistanceMaps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: distance maps
averageG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
averageImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
averageIntensities - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
averageIntensities - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
averageMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageMode - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
averagePt - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the average of the contour of a VOI.
averageR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageSAR - Variable in class gov.nih.mipav.model.file.FileGESigna4X
averageSAR - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
averagesNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
averagesNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
AverageVariance(AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
averagingNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: DOCUMENT ME!
averagingNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
AVGERAGE_WITH_STDEV - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
avgInten - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgInten - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntensity - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
avgIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
avgIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgJ0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
avgPix(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: This method calculates the average pixel value based on the four neighbors (N, S, E, W).
avgPix(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: This method calculates the average pixel value based on the four neighbors (N, S, E, W).
avgVolIndex - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: Philips puts in one volume as the average of all the DWIs.
Avi - gov.nih.mipav.model.file.MetadataExtractor.FileType
AVI - Static variable in class gov.nih.mipav.model.file.FileUtility: AVI file type.
AVI - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Filter avi files (*.avi).
AVI_COMPRESSION - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Label for the avi compression parameter.
AVI_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI is recording.
AVICompression - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
AVIF_HASINDEX - Variable in class gov.nih.mipav.model.file.FileAvi
AVIF_ISINTERLEAVED - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
AVIF_MUSTUSEINDEX - Variable in class gov.nih.mipav.model.file.FileAvi: globals needed for read - set in readHeader, used in readImage.
aviField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
aviPlayButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder Play button.
aviRecordButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder record button.
aviStopButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder Stop button.
avsimp(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
avsvd(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Awt wake up condition .
awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Awt wake up condition .
AWTImageSourceStream(int, int, int, Image[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: Creates a new AWTImageSourceStream object.
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
axes - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
axes - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
axesRatio - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
axesRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
axesRatioLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
axesRatioText - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: axis oritentation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: axis orietation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Axial image type
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Axial image type
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
AXIAL - gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
AXIAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axial orientation.
AXIAL_A - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
AXIAL_AB - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
AXIAL_B - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
AXIAL_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient
AXIAL_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: along the major axis (+).
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: (3D only).
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: (3D only).
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axialOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicates that image orientation is unknown type or not.
AxialVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Axial VOI instance
axioCamAnalogGainEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamBlackReference - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamColorModel - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamDelayTime - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamEnhanceColor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamMicroScanning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamNIRMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamResolution - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamSaturation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamSelector - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamShutterControl - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamShutterSignal - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
AXION - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AXION1(int[], int[], double[], int, int, int[], int[], int[], double[], double, boolean[], double[], int[], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
axis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: DOCUMENT ME!
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
AXIS_DEC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: DOCUMENT ME!
AXIS_INC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render selected planes in order of increasing/decreasing coordinate.
AXIS_ORIENTATIONS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: The label to use for the parameter indicating the new axis orientations
AXIS_UNDEFINED - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Used to represent undefined AXIS_*.
AXIS_X - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume YZ planes in order of increasing/decreasing X.
AXIS_Y - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume ZX planes in order of increasing/decreasing Y.
AXIS_Z - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume XY planes in order of increasing/decreasing Z.
axisAligned() - Method in class gov.nih.mipav.view.PatientSlice: Determines if a slice is axis-aligned, based on the m_kFourCorners[] four corners of the slice in 3D Model space.
axisAngle - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisAngle - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
axisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
axisDirA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
axisDirB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
axisFlip - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
axisFlip - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
axisLabels - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Labels for the axes:.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: axis panel.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: axis region.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
axisMaxs - Variable in class gov.nih.mipav.model.file.FileNRRD: Maximum axis value.
axisMins - Variable in class gov.nih.mipav.model.file.FileNRRD: Minimum axis value.
axisOrder - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
axisOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
axisOrient - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.model.file.FileInfoBase: axis orientation used to support image ordering and display for medical images.
axisOrientation - Static variable in class gov.nih.mipav.model.file.FileInfoMincHDF: The axis orientation static types
axisOrientation - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.model.file.FileNIFTI: R2L, L2R, A2P, P2A, I2S, and S2I orientations of x, y, and z axes.
axisOrientation - Variable in class gov.nih.mipav.model.file.FileNRRD: For each axis R2L, L2R, A2P, P2A, I2S, or S2I
axisOrientation - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.view.ViewJComponentTriImage
AxisOrientation(int, String) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
axisOrientation2 - Variable in class gov.nih.mipav.model.file.FileNIFTI: When both qform_code > 0 and sform_code > 0, the axis orientation information corresponding to sform_code > 0 is placed in axisOrientation2
axisOrientationStr - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Array of axis orientation strings.
axisPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
axisX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisX - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisY - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisZ - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
az - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Svec
AZETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
azetac - Static variable in class gov.nih.mipav.model.algorithms.Cephes
AZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
azimuth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
azimuthArray - Variable in class gov.nih.mipav.model.file.FileNIFTI