Index (MIPAV API Documentation)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes All Packages

A

a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
a - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
a - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
a - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
a - Variable in class gov.nih.mipav.model.algorithms.Gamma
a - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input parameter
a - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
a - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
a - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
a - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
a - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
a - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
a - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
a - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
a() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
A - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
A - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
A - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
A - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
A - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < observation mean
A - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
A - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Affine
A - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
A - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
A - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
A() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
A_array - Variable in class gov.nih.mipav.model.algorithms.dataStruct
a_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the alpha value of this pixel at its current position.
A_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice: This is an x clip slice.
a_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
A_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
A_nfmt - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
a_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
a_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
a_offset - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
a_squared_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TukeyLoss
a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a0 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
a0 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
a0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
a0Num - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
a0Num - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
a1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
a1 - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a1 - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
A1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
a11 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse: < center y-coordinate
a11 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a12 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse: <
a12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a13 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
A1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a21 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a22 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
a22 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a23 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
a33 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
a4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
a7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
aaAccurateSmoothing - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
Aac - gov.nih.mipav.model.file.MetadataExtractor.FileType
AAM_MAX2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the max function with two given double values.
AAM_MAX3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the max function for three given double values.
AAM_MIN2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the min function for two given double values.
AAM_MIN3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the min function for three given double values.
aam_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
aaMask - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aamc - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
aamc() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.aamc
aamClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMdef - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
AAMdef() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
aamGroupRename() - Method in class gov.nih.mipav.view.ViewJFrameImage
aamGroups() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMinitialization() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Atlas based AAM segmentation.
AAMLoadAnalyzerSynthesizer(DataInputStream, CAAMReferenceFrame) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyzer/Synthesizer loader.
AAMLoadTransferFunction(DataInputStream, CAAMModel) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: The function loads a transfer function from a stream, instantiates the correct concrete class and returns a base class pointer.
aamMLClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes
AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes
AAMRound(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: Round up function
aaPatch - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaPatchX - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aaPatchY - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
abbrev - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset labels.
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset labels.
abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset labels.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset min, max values.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset min, max values.
abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Preset min, max values.
abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Preset min, max values.
abort - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: If true stop processing.
abort() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Aborts an association and closes the socket.
AbortingIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.AbortingIterationCallback
abortRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Abort connection request.
about() - Method in class gov.nih.mipav.view.ViewJFrameImage: Makes an aboutDialog box and displays information of the image plane presently being displayed.
about() - Method in class gov.nih.mipav.view.ViewUserInterface: Creates simple dialog that describes basic info about MIPAV, with MIPAV as the title.
about(int, int) - Method in class gov.nih.mipav.view.ViewJFrameBase: Makes an aboutDialog box that displays information about the image slice.
about(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface: Creates a fairly simple plain-text viewing box.
ABOUT_MIPAV - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase: Access about mipav panel
aboutDataProvenance() - Method in class gov.nih.mipav.view.ViewUserInterface: Displays the system data provenance using a simple dialog with table and jtextarea (for current selection).
aboutJava() - Method in class gov.nih.mipav.view.ViewUserInterface: Creates simple dialog that describes basic info about the version of Java.
aboutPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
ABOVE - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
aboveMedian - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: factor above median at which edge values are taken to zero.
aboveMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: The factor above which second stage edge erosion occurs.
abs() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the absolute value of this value.
Abs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes the absolute valueof each element.
abs1(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
ABS1(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
Abs2Rel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from absolute to relative.
Abs2Rel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Converts shape coordinates from absolute to relative by using the hostimage.
absBiggest(double, double, double) - Method in class gov.nih.mipav.model.file.FileIO: Helper method for finding biggest (absolute value) of three numbers.
absButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
abscissa - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
abscissa - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: abscissa of convergence of the Laplace transform.
absEps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2: DOCUMENT ME!
absEps - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2: absolute accuracy requested.
abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2: Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
abserr - Variable in class gov.nih.mipav.model.algorithms.ODE
abserr - Variable in class gov.nih.mipav.model.algorithms.ODEEP
absGtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absGw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absHtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absHw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
absMinThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: pixel does not get remapped when pixel is below threshold.
ABSOLUTE_VALUE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
ABSOLUTE_VALUE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
absoluteGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Method that goes to the absolute voxel coordinate that is entered
absoluteGoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current absolute position:.
absoluteLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: Labels for the current absolute position:.
absoluteLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: Labels for the current absolute position values:.
absoluteLabelVals - Variable in class gov.nih.mipav.view.ViewJFrameBase: Labels for the current absolute position values:.
absolutePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions: JPanel containing the absoulte position labels:.
absolutePanel - Variable in class gov.nih.mipav.view.ViewJFrameBase: JPanel containing the absoulte position labels:.
absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: total number of voxels at a particular nonzero level.
absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: total number of id voxels in true image.
absoluteValue(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: absolute value
absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileAnalyze: Take the absolute value of image.
absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileNIFTI: Absolute value of image.
absoluteWindowLevelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
absoluteXLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteXTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteYLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteYTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
absoluteZLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase: voxel absolute goto components*
absoluteZTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
abssq(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
absstp - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
absSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Abstract syntax object.
abstol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
abstol - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
aButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
ac - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
AC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass
ac_cur_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_derived_tbl - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_derived_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
ac_huff_tbl_ptrs - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
AC_STAT_BINS - Static variable in class gov.nih.mipav.model.file.libjpeg
ac_stats - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
ac_tbl_no - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
ac1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ac9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
acc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
acc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
acc_online_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ACC_ONLINE_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
accel - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
accept(File) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: FileFilter override.
accept(File) - Method in class gov.nih.mipav.view.ViewImageFileFilter: One of the overrides to FileFilter.
accept(String) - Method in class gov.nih.mipav.view.ViewImageFileFilter: Checks if extension matches what is accepted for the filter type.
acceptedChars - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
acceptedSocket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Socket used to receive the data.
acceptorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
acceptorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
acceptorImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
acceptorRun - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: If acceptorRun is true, run on 3 images with acceptor dye only.
acceptorRun - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
access_virt_barray(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_barray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
access_virt_sarray8(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
access_virt_sarray9to12(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
accessionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
accessLock - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
accessoryPanel - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: permits the caller to get a value out of the primary table by using the name given to the fileInfo.
accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: permits the caller to get a value out of the primary table by using the name given to the fileInfo.
accumulate - Variable in class gov.nih.mipav.model.algorithms.SVM
accumulate_hom - Variable in class gov.nih.mipav.model.algorithms.SVM
accumulated_candidate_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
accumulated_reference_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
accumulateFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
accumulateFunction(int, SVM.VlSvmDataset, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM
accur() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
accuracy - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
aCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
aCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
acheck(LSQR.lsqr_solver_ez, int, int, RandomAccessFile, double, double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
acins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
acins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
ackleyNum - Variable in class gov.nih.mipav.model.algorithms.NelderMead
AclipPlanePts - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane four corners points.
aClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState: Boolean visibility values for x, y, z, arbitrary clipping slider frames.
ACOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ACOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
acos() - Method in class gov.nih.mipav.util.DoubleDouble: For all -1 < x < 1, arccos(x) = PI/2 - arcsin(x)
ACPC_ANTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_INFERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_LATERAL - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_POSTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_SUPERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: acpc constants.
ACPC_TO_ORIG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ACPC_TO_ORIG - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
ACPC_TO_TLRC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
ACPC_TO_TLRC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
acpcAC - Variable in class gov.nih.mipav.model.file.FileAfni: Anterior Comissure in acpc space.
acpcAC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Anterior Comissure in acpc space.
acpcACFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Image dimensions.
acpcDimFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
ACPCGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ACPCImage - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
acpcMax - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMax - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC min and max extents of the brain.
acpcMaxCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMaxFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcMaxPt - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcMin - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMin - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: ACPC min and max extents of the brain.
acpcMinCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcMinFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: TLRC Specific info.
acpcMinPt - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcPC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Posterior Comissure in acpc space.
acpcPC - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcPCCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
acpcPCFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcRes - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acpcRes - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo: Voxel resolution (cubic).
acpcRes - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResField - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
acpcResLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResOrg - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcResText - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
acpcToOrig(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to orig...matrix is implicitly inverted in code.
acpcToOrig(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to orig...matrix is implicitly inverted in code.
acpcToTlrc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to tlrc.
acpcToTlrc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo: Transforms point from acpc to tlrc.
acqGradMat - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
acquiredCardiacCycles - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredCardiacCyclesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredStudyDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquiredStudyDurationIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
acquisitionBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
AcquisitionDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
acquisitionMatrix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
acquisitionMode - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AcquisitionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
acquisitionOrientationField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
acquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AcquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
AcquisitionTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
AcquisitionTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
actInt(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
action - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor
action - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry: action describing the event
action - Variable in class gov.nih.mipav.model.scripting.ParsedActionLine: The String representing the action which should be taken when this line is executed.
action - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
action - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: Current notes for the node.
ActionAdapter() - Constructor for class gov.nih.mipav.view.MipavUtil.ActionAdapter: Creates a new ActionAdapter object.
ActionBase - Class in gov.nih.mipav.model.scripting.actions: A base class for all non-algorithmic (not JDialog*) script actions.
ActionBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionBase
ActionChangeEndianess - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's endianess
ActionChangeEndianess() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeEndianess(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess: Main constructor with parameters for changing the endianess
ActionChangeModality - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's modality
ActionChangeModality() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeModality(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality: Main constructor with parameters for changing the modality
ActionChangeName - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the name of an image.
ActionChangeName() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeName(ModelImage, String, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName: Constructor used to record the ChangeName script action line.
ActionChangeOrientations - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's orientations
ActionChangeOrientations() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeOrientations(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: Main constructor with parameters for changing the orientations
ActionChangeOrigin - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's origin
ActionChangeOrigin() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeOrigin(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin: Main constructor with parameters for changing the origin
ActionChangeResolutions - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions.
ActionChangeResolutions() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeResolutions(ModelImage, boolean, int, float) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Main constructor with parameters for changing the resolution/slice thickness.
ActionChangeTalairachInfo - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's talairach information
ActionChangeTalairachInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeTalairachInfo(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo: Main constructor with parameters for changing the talairach information
ActionChangeTransformInfo - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions
ActionChangeTransformInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeTransformInfo(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo: Main constructor with parameters for changing the transform information
ActionChangeUnits - Class in gov.nih.mipav.model.scripting.actions: A script action which changes the image's resolutions
ActionChangeUnits() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: Constructor for the dynamic instantiation and execution of the script action.
ActionChangeUnits(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits: Main constructor with parameters for changing the units of measure
ActionClone - Class in gov.nih.mipav.model.scripting.actions: A script action which clones an input image and puts it into a new image frame.
ActionClone() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone: Constructor for the dynamic instantiation and execution of the script action.
ActionClone(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone: Constructor used to record the script action line.
ActionCloseFrame - Class in gov.nih.mipav.model.scripting.actions: An action which closes the frame containing an image.
ActionCloseFrame() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: Constructor for the dynamic instantiation and execution of the script action.
ActionCloseFrame(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame: Constructor used to record the script action line.
ActionCollectGarbage - Class in gov.nih.mipav.model.scripting.actions: Forces the JVM to perform a garbage collection of un-referenced memory.
ActionCollectGarbage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCollectGarbage
ActionCreateBlankImage - Class in gov.nih.mipav.model.scripting.actions: A script action which creates a new blank image with a set of characteristics.
ActionCreateBlankImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Constructor for the dynamic instantiation and execution of the CreateBlankImage script action.
ActionCreateBlankImage(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Constructor used to record the CreateBlankImage script action line.
actionDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
ActionDiscovery - Interface in gov.nih.mipav.view.dialogs: Classes which implement this interface are able to report metainformation about themselves, return their input and output parameters, run their action using a set of input parameters, retrieve the real name of images they output, and return whether they have completed successfully.
ActionExit - Class in gov.nih.mipav.model.scripting.actions: A script action which causes MIPAV to exit completely.
ActionExit() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExit
ActionExtractImageB - Class in gov.nih.mipav.model.scripting.actions: An action which extracts the imageB from a frame and puts it into a new image frame.
ActionExtractImageB() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: Constructor for the dynamic instantiation and execution of the script action.
ActionExtractImageB(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB: Constructor used to record the script action line.
actionField - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: NoteField for providing a note about this marker.
ActionImageProcessorBase - Class in gov.nih.mipav.model.scripting.actions: A base class for script actions which perform their action using an input image.
ActionImageProcessorBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor for the dynamic instantiation and execution of the script action.
ActionImageProcessorBase(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor used to record the Clone script action line.
ActionImageProcessorBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase: Constructor used to record the Clone script action line.
ActionKeyListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
actionListener - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
ActionMaskToPaint - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a paint mask based on a mask image.
ActionMaskToPaint() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: Constructor for the dynamic instantiation and execution of the MaskToPaint script action.
ActionMaskToPaint(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint: Constructor used to record the MaskToPaint script action line.
ActionMaskToVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a VOI from a mask image.
ActionMaskToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: Constructor for the dynamic instantiation and execution of the MaskToVOI script action.
ActionMaskToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI: Constructor used to record the MaskToVOI script action line.
ActionMetadata - Interface in gov.nih.mipav.view.dialogs
ActionMetadata.ImageRequirements - Enum in gov.nih.mipav.view.dialogs
ActionOpenAllVOIs - Class in gov.nih.mipav.model.scripting.actions: A script action which opens all VOIs from the directory where VOIs are saved by default when a SaveAllVOIs action is executed.
ActionOpenAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: Constructor for the dynamic instantiation and execution of the OpenAllVOIs script action.
ActionOpenAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs: Constructor used to record the OpenAllVOIs script action line.
ActionOpenImage - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the opening of an image
ActionOpenImage(ModelImage) - Constructor for class gov.nih.mipav.model.provenance.actions.ActionOpenImage: Constructor used to record the provenance action line
ActionOpenVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which opens a VOI from disk and adds it to an image.
ActionOpenVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: Constructor for the dynamic instantiation and execution of the OpenVOI script action.
ActionOpenVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI: Constructor used to record the OpenVOI script action line.
ActionPaintToMask - Class in gov.nih.mipav.model.scripting.actions: A script action which converts all paint within an image to some type of mask image (short, binary, ubyte).
ActionPaintToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Constructor for the dynamic instantiation and execution of the PaintToMask script action.
ActionPaintToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask: Constructor used to record the PaintToMask script action line.
ActionPaintToVOI - Class in gov.nih.mipav.model.scripting.actions: A script action which generates a VOI based on the paint mask of an image.
ActionPaintToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: Constructor for the dynamic instantiation and execution of the PaintToVOI script action.
ActionPaintToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI: Constructor used to record the PaintToVOI script action line.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Routine to catch action events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.CoordinateViewListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Calls various methods depending on the action used by the advanced calculator.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.file.FileJP2
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin: Do super.actionPerformed().
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: When the OK button is pressed, sets variables and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Responds to row button, column button, OK button, cancel button, and borderB button for color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.OkBorderListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Performs some error checking, then closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Catches action events: Okay, Cancel, Help and ChooseColor.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.UpdateTextAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: Closes dialog box when the OK button is pressed and does the routine.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.HelpAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.OKAction: Key action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Handle action events from the GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Handles events generated by the user interface, and takes appropriate action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Performs the following actions based on the command:
OK - uses the "current rectangle" set either by a listener of a glass pane (region mode) or by the window listener (window mode) Cancel - cleans up and disposes the dialog Region - sets all the glass panes visible to enable drawing on top of objects without selecting them Window - sets the glass panes invisible; then when a window is selected, the listener will save that rectangle.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens: Handles the action events (called from script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: Sets parameters in ViewJComponentEditImage when Apply is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: a button has been clicked!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Calls run on the algorithm from the script parser.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Handles the IGNORE button possibility of the ActionEvent, otherwise passes control to the super event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for catching actions (button/script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The actionPerformed method
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: closes the dialog when the user clicks close.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF: Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: closes the dialog when the user clicks close.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: Sets the appropriate file filter when the "OK" button is pressed; otherwise disposes of the dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Processes button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint: Tests if entered intensity is within bounds and saves it.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBgListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBorderListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Performs a directed action of the delete button or listB buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLivewire: Sets the selection based on which radio button is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: a button has been clicked!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask3D4D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Closes Dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: Reads event from one of the buttons to perform that buttons action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Processes the events from this dialog's buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNColors: Tests then sets the number of colors when the "OK" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: actionPerformed - closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls: Sets opacity once close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrder: Disposes of dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay: performed an action!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: the usual stuff.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: Sets parameters in PaintGrowListener when Apply is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents: Sets opacity once close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: Handle events from the dialog's buttons.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.UpdateYSpaceAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Only perform the save LUT action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController: Main event handler for MIPAV scripting tool.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Closes dialog box when the OK button is pressed and sets the information, doing error checking for every tag.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc: Closes dialog box when the OK button is pressed and sets the information.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: Closes dialog box when the OK button is pressed and sets the information; when multi checkbox is selected or deselected, enables or disables appropriate labels and text fields; and disposes on cancel.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Reacts to the following actions:
Open - asks the user to choose a script file and dumps the contents to the text area
Save - saves the script to a file
Exit - calls windowClosing
Pause - pauses or resumes the script recording by setting isRecording appropriately
Edit - makes the text area editable or uneditable.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: If the user hits the "OK" button, checks to make sure he or she entered valid data.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Sets smoothing varaibles when "OK" is pressed; enables the volumeText box when the limitCheckBox is pressed, disposes dialog when "Cancel" is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for catching actions (button/script).
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Closes dialog box when the "Close" button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Converts the file infos to FileInfoDicoms.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC: If user clicks "Set", sets point here and in component image.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Presently only the script function calls this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod.ThresholdChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ProcessChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: Calls transform methods to transform image if "Apply" is pressed; if "Cancel" is pressed, disposes.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrim: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO: Closes dialog box when the OK button is pressed and sets the image type and suffix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: when a button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelAddRemoveVOI: Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions.StatisticsOptionsActionListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Applies changes to VOI when "Apply" is pressed; closes when "Cancel" is pressed; and calculates statistics and outputs them to the message frame when "Calculate" is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom: Closes dialog box when the OK button is pressed and sets zoom.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: actionPerformed - JButton events:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: When state changes in some elements of the panel, the panel must make display changes; these changes are registered here.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.ExcluderOptionsActionListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Performs the following actions based on the command:
OK - Initializes pertinent fields, checking that all fields are filled out correctly, before sending the information to be processed for an email Cancel - cleans up and disposes the dialog Other - sends event to secondary method that looks for combobox events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAction
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Catches action events: Okay, Cancel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JFrameHistogram
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelChecklist: Closes dialog box when the OK button is pressed and does the routine.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelFileSelection: Responds to ActionEvents, such as the "Browse" button being clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelListController: responds to the button presses.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelTreeController: responds to the button presses.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.MipavUtil.ActionAdapter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Invoke the action event accroding to the comamnd passed in.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener: Unchanged.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Closes dialog box when the OK button is pressed and sets the variables.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Action performed method required when extending JPanelRendererBase.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: actionPerformed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI: Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Performs various actions depending on which event triggered this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: Perform action for okButton and cancelButton.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The override necessary to be an ActionListener.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener: Do nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView: Executes the following actions depending on what called this method:
Fly - changes the view platform to fly mode, so that the left mouse button is zoom, the right mouse button is translate, and the middle mouse button is pitch and roll. Standard - changes the view platform back to the standard, with the left mouse button grabbing the object and rotating it and the left mouse button with the alt mask doing a zoom. Reset - resets the view to what it was when the user called up this dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Performs various actions depending on which event triggered this method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: Perform action for okButton and cancelButton.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Calls various methods depending on the action: Load in menu - calls a file chooser and loads the quad surface Save in menu - calls a file chooser and saves the quad surface Exit in menu - exits this frame View in menu - opens view dialog Mouse in menu - opens mouse recorder dialog Line checkbox in menu - toggles polygon mode between fill and line Visible checkbox on panel - toggles image on and off
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Action perform event function that handle all the commands in the probe panel.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener: Unchanged.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.OkColorListener: Sets the button color to the chosen color and changes the color of the surface.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Handler for action events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener: Does nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener: Get color from chooser and set button and VOI color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: On "OK", sets the name variable to the text entered.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice: Checks to see if the OK or Cancel buttons were pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Action performed method.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.SceneState: Stub method for classes that extend this Object.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline: action performed
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener: Do nothing.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.OkColorListener: Sets the button color to the chosen color and changes the color of the fiber bundle.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM: Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: ActionListener event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Called when a button is pressed:
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Command processor to handle the geodesic button events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The override necessary to be an ActionListener.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM: actionPerformed, listens for interface events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Dialog local handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Action performed handler for this dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: ActionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Dialog local handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Closes dialog box when the OK button is pressed and calls the algorithm.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Just handle GUI button clicks event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Just handle GUI button clicks event.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: Dialog local actionPerformed handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: handler the button click evens.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener: Get color from chooser and set button and color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire: Stops the thread, and disposes the progress bar.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewControlsImage: Action event handler.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory: Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase: Method to handle action events generated by the main UI when the current frame is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: Handles action events
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph: Takes the action commands and paints if the apply button is pressed, closes if the close button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.bColorListener: Resets the background color based on the user's choice.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.CancelListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.ColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage: calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.OkColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Handler for action events.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessage: If "Save", saves text to file; if "Clear", clears appropriate text area; if "Copy", copies text to clipboard; if "Cut", removes the text and copies it to the clipboard; and if "Select", selects all text in text area.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Closes dialog box when the OK button is pressed.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Listen for events from the MIP frame GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage.OkColorListener: Pick up the selected color and call method to change the color.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.OkColorListener: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calls various methods depending on the action.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Will execute the uninstall action
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar: Closes this progress bar when the cancel button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface: Calls various methods based on the user's actions.
actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
ActionSaveAllVOIs - Class in gov.nih.mipav.model.scripting.actions: A script action which saves all the VOIs in an image to disk.
ActionSaveAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor for the dynamic instantiation and execution of the SaveAllVOIs script action.
ActionSaveAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor used to record the SaveAllVOIs script action line.
ActionSaveAllVOIs(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs: Constructor used to record the SaveAllVOIs script action line.
ActionSaveBase - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Constructor for the dynamic instantiation and execution of the script action.
ActionSaveBase(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Constructor used to record the script action line.
ActionSaveImage - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage: Constructor for the dynamic instantiation and execution of the SaveImage script action.
ActionSaveImage(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage: Constructor used to record the script action line.
ActionSaveImageAs - Class in gov.nih.mipav.model.scripting.actions: A script action which writes out an image to disk.
ActionSaveImageAs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: Constructor for the dynamic instantiation and execution of the SaveImage script action.
ActionSaveImageAs(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs: Constructor used to record the script action line.
ActionSaveTab - Class in gov.nih.mipav.model.scripting.actions: A script action which records saves the text contained in one of the output frame's tabs.
ActionSaveTab() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab: Constructor for the dynamic instantiation and execution of the SaveTab script action.
ActionSaveTab(String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab: Constructor used to record the SaveTab script action line.
ActionSaveVOIIntensities - Class in gov.nih.mipav.model.scripting.actions: A script action which saves all the VOI intensities in an image to disk.
ActionSaveVOIIntensities() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor for the dynamic instantiation and execution of the SaveVOIIntensities script action.
ActionSaveVOIIntensities(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor used to record the SaveVOIIntensities script action line.
ActionSaveVOIIntensities(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities: Constructor used to record the SaveVOIIntensities script action line.
ActionSelectAllVOIs - Class in gov.nih.mipav.model.scripting.actions
ActionSelectAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs: Constructor for the dynamic instantiation and execution of the SelectAllVOIs script action.
ActionSelectAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs: Constructor used to record the SelectAllVOIs script action line.
ActionStartMipav - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the starting of MIPAV
ActionStartMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStartMipav
ActionStopMipav - Class in gov.nih.mipav.model.provenance.actions: An action for the mipav system data provenance that records the closing of MIPAV
ActionStopMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStopMipav
ActionVOIToMask - Class in gov.nih.mipav.model.scripting.actions: A script action which converts all VOIs within an image to some type of mask image (short, binary, ubyte).
ActionVOIToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Constructor for the dynamic instantiation and execution of the VOIToMask script action.
ActionVOIToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask: Constructor used to record the VOIToMask script action line.
activate() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
activateStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
active - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta
active - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
active - Variable in class gov.nih.mipav.model.structures.VOI
active - Variable in class gov.nih.mipav.model.structures.VOIBase: Flag indicating whether or not a VOI is active (selected).
active - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
active - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
active(int, double[], double[], int[], double[], int[], int, boolean[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
ACTIVE_IMAGE_COLOR - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage: Color used in the rectangle indicating the image is active.
active_set - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
active_set - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
active_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
active_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
activeBurn(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Active the current burning point type.
activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
activeColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
activeContoursAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
activeDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
activeFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen: Active frame
activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: The image that contains the VOI text.
activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim: The currently selected image
activeImageColorBorderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: border size for active image color
activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
activeLightBulbIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Record the current active index of light bulb, which is being picked.
activeProbe(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Active the corresponding probe with the given probe type.
activeReceivers - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
activeSliceButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: DOCUMENT ME!
activeTree - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Livewire calculations:
activeTree - Variable in class gov.nih.mipav.view.RubberbandLivewire: DOCUMENT ME!
ActiveTree() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree: Sets root node to null.
ActiveTree() - Constructor for class gov.nih.mipav.view.RubberbandLivewire.ActiveTree: Sets root node to null.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: The voi selected by the user.
activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: The VOI on which to perform the calculations.
activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation only for the active volume
activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
actOnPath - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: for the files selected ...
actual_number_of_colors - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2
actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
actualDateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 18.
actualHistory - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
actualThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
actualThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualThresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualThresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
aCutoff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
AD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ad1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ad9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
ADAMS_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
adaptiveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
adaptiveTruncatedVectorMedian(float, float, float, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Only used with color images in vector filtering.
adaptiveVectorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
adbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
adcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
ADCImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
add(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
add(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator: New edges that occur because of modified triangles being added to the mesh must be added to the heap and the heap must be updated.
add(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit: Adds the parameter i to the stored value.
add(int[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples: Add the following information for a "branch" path of the graph: an array of key values for each point along the path, an array of 3D coordinates assoicated with each point, and an array of distances each point is from its nearest boundary.
add(int, float) - Method in class gov.nih.mipav.model.structures.HQueue: add - adds a value to the queue.
add(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph: Add a branch to the already existing branch at the specified distance along the branch.
add(int, VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
add(MetadataExtractor.Knot) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath: Appends a knot (set of 3 points) into the list
add(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial
add(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
add(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
add(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Called from ViewJComponentTriImage to add the image-align protractor.
add(VOIBase, int, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add a point to the voi contour
add(VOIBase, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add a new point to the end of the current contour.
add(VOIPoint) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice: Add a new VOIPoint to this polyline.
add(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: Returns a DoubleDouble whose value is (this + y).
add(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Plus operator.
add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
add(CVisRGBA, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
add(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
add(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
add(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
add(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
add(Component) - Method in class gov.nih.mipav.view.JScrollMenu
add(Component, int) - Method in class gov.nih.mipav.view.JScrollMenu
add(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewControlsImage: Adds a component to the toolbar panel using the given gridbag constraints.
add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet: DOCUMENT ME!
add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Adds a new mouse event to the end of the mouseEvents vector.
add(Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Adds a new mouse event to the end of the mouseEvents vector.
add(Object, Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter: Adds a new mouse event to the end of the mouseEvents vector.
add(Object, Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector: Adds a new mouse event to the end of the mouseEvents vector.
add(HashMap<String, String>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
add(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel.
add(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel.
add(JMenuItem) - Method in class gov.nih.mipav.view.JScrollMenu
add(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
add(Polyline, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
Add(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
Add(NVectorF, float, NVectorF, float, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Add(NVectorF, float, NVectorF, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
Add(VectorD, double, VectorD, double, VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Add(VectorD, double, VectorD, VectorD) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
Add(VectorF, float, VectorF, float, VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
Add(VectorF, float, VectorF, VectorF) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
ADD - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
ADD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: operation constants
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: add
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
add_dictionary(int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
add_edge_to_aet(GenericPolygonClipper.edge_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_event(TURN_REP, TURN_REP, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
add_gaussian_noise(double[], double[], double[], double, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
add_intersection(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_into(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
add_into(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
add_into(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
add_into(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
add_into(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
add_into(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
add_into(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
add_into(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
add_left(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_local_min(GenericPolygonClipper.polygon_node[], GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_right(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_st_edge(GenericPolygonClipper.st_node[], GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add_SubSigs(AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ADD_TAG - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For adding a top level dicom tag
ADD_TAG_SEQ - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: For adding a dicom tag contained within a sequence
add_to_sbtree(int[], GenericPolygonClipper.sb_tree[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
add128 - Variable in class gov.nih.mipav.model.file.FileZVI
add3DMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
add3DVOI(String, SurfaceState, VolumeSurface) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
addABCD(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
addAbstractSyntax(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds proposed abstract syntax to hash table.
addActionListener(ActionListener) - Method in class gov.nih.mipav.view.ViewJProgressBar: DOCUMENT ME!
addActiveImageControl() - Method in class gov.nih.mipav.view.ViewControlsImage: Displays the panel which controls which image is the "active image" displayed when imageB is available.
addAllSupportedAbstractSyntaxes() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds all proposed abstract syntaxes to hash table.
addAloneMenu(JMenuBar) - Method in class gov.nih.mipav.view.ViewUserInterface: Adds a standalone menu to the user interface.
addAmbient(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to ambient lighting.
addAnimationLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addAnimationVOIs(VOIVector, JPanelAnnotationAnimation) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addAnnotateButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: button for adding annotation points for the path planning
addAnnotation(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Add an annotation to the latticeModel.
addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Add an annotation to the latticeModel.
addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Add an annotation to the annotation list.
addAnnotation(VOIWormAnnotation, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface: Adds an annotation listener to the latticeModel.
addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds an annotation listener.
addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: When left mouse press with the control key down on the bottom three planar view, add the annotation point
addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Add the annotation point
addAnnotations(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Called when new annotations are loaded from file, replaces current annotations.
addAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc: Creates the anonymization button and adds it to the button panel.
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Creates the anonymization button and adds it to the button panel.
addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Creates the anonymization button and adds it to the button panel.
addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
addAttValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Sets the value of the attribute element; used for setting attribute of variables.
AddBackSlash(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Ensures that a string is terminated with a backslash.
addBlur(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Combines the randomized-voxel blurred image with the output image.
addBorder(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
addBorder3D(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: This method adds a border to the input data so that borders can be dealt with easily.
addBoxSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Adds the slice frame for slice of the given orientation to the scene graph.
addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds a BranchGroup to the display.
addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender -- adds a BranchGroup to the main Display.
addBranchGroup(Node, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Creates a BranchGroup containing the input Node and Transform3D, and returns the BranchGroup.
addBrowseFilesButton() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: adds the "Browse Files ...." button to the right of the panel.
addBurn(BurnAttributes) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: Add a burn to the treatment list.
addButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
addButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
addButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Selection buttons
addButton(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Creating buttons
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
addButtonSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector: Buttons used by this dialog
addCellEditorListener(CellEditorListener) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
addChannelCheckboxListener(ItemListener) - Method in class gov.nih.mipav.view.components.JPanelColorChannels: Add an ItemListener to all of the color channel checkboxes.
addChannelComponent(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
addChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
addCleanupOnWindowClosingListener(Window) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Adds a WindowListener to the specified window that takes care of cleanup (GL resources) when the window is about to close.
addClipSlice() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach clipping plane branch group.
addClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach arbitrary clip slice bounding frame.
addClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach static clip slice bounding frame.
addClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach static inverse clip slice bounding frame.
addClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach X clip slice bounding frame.
addClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach X Invative clip slice bounding frame.
addClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Y clip slice bounding frame.
addClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Y Invative clip slice bounding frame.
addClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Z clip slice bounding frame.
addClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Attach Z Invative clip slice bounding frame.
addCollectionOfRunnable(Collection<Runnable>, Collection<String>) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Secondary method for registering algorithms to the multi-bar.
addCommentLine(String) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Appends a comment line to the current script (if one is being recorded).
AddComplexRootPair(Vector<Double>, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addConnections(Backpropagation.Neuron[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
addConnections(ArrayList<Backpropagation.Neuron>) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Method that adds components to the control paenl.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Method that adds components to the control paenl.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Adds a component to the control panel.
addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Adds a component to the control panel.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Helper method that adds components to the control panel for the grid bag layout.
addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Helper method that adds components to the control panel for the grid bag layout.
addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE: Creates the convert button and adds it to the button panel.
addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X: Creates the convert button and adds it to the button panel.
addCoordinateChangeListener(CoordinateChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Add someone who wants to be notified about crosshair coordinate changes.
addCoordinateViewListener(ContourPlot.CoordinateViewListener) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer: Adds a ContourPlot.CoordinateViewListener to this renderer which will be notified whenever the coordinate view changes (i.e. when ContourPlot.CoordSysRenderer.setCoordinateView(double, double, double, double) is called)
addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Attach cubic control branch group.
addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Attach cubic control branch group.
addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewControlsImage
addDataset(String, Integer, Boolean) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addDatasetRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
addDataToHash(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.famsPoint, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
addDataToRes(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_res_cont, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
addDDTypeHash(int, int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC: DOCUMENT ME!
addDetector(String, String, String, Float, Float, Float, Integer, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
AddDiagonalAndInvert(double[], int, CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
addDiffuse(SoftwareMaterial, SoftwareVertexProperty, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to diffuse lighting.
addDimElem(String, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new dimension element with the specified parameters into the dimension array at the gievn index.
addDirectory(T) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata: Adds a directory to this metadata collection.
addDirToLibPath(String) - Static method in class gov.nih.mipav.util.NativeLibraryLoader
addedCurve(VOIEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIListener: handles an VOIEvent as a selection change.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter: We are not interested in adding Curves, so this method is empty.
addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addEdge(float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Add the edge to the EdgeList, check to make sure that edge has not already been added.
addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Add the edge to the EdgeList, check to make sure that edge has not already been added.
AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddEdge(Vertex, Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddEdgeIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
AddEdges(double[], double, Edge[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: DOCUMENT ME!
addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: DOCUMENT ME!
addedVOI - Variable in class gov.nih.mipav.model.file.FileCheshireVOI: DOCUMENT ME!
addedVOI(VOIVectorEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIVectorListener: handles an VOIEvent as a selection change.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addElement(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Adds a point to the curve.
addElement(int) - Method in class gov.nih.mipav.model.structures.IntVector: Pushes a new value onto the array.
addElement(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Adds a point to the curve.
addElement(ProvenanceEntry) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Catches the Vector's addElement for listener notifaction
addElement(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
addElement(VOI) - Method in class gov.nih.mipav.view.ViewVOIVector: Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
addElement(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
addElement(VOIBase, boolean) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
AddElementToGroup(T, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
addEntry(Class, Class...) - Method in class gov.nih.mipav.plugins.ManifestFile: Adds an entry to the manifest file, does in fact write to the file.
addError(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory: Registers an error message with this directory.
addError(String, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
AddEvent(String) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
addExifTagNames(HashMap<Integer, String>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase
addExperiment(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addExperimenter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addExtension(String) - Method in class gov.nih.mipav.model.file.FileTypeInfo: Add an extension to the file type's list of supported suffixes.
addExtension(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt: Add an extension to the list of possible extensions valid for this filter.
addExtensionAssociation(String, int) - Static method in class gov.nih.mipav.model.file.FileTypeTable
AddExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Returns the amount shape extents added (warning: shape extents will be remove in later versions).
addFace() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
addFace(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
addFiles(File, Vector<String>) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
addFilesToVector(String, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Recursively adds DICOM filenames and directory paths to a Vector.
addFilter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addFindResultToList(DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Utility function to collect the results of a DICOM query.
addFlightPath() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Updates the surRender to display the flythru flight path from the flythruRender.
addFlightPath(Shape3D, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds the flythru path shape and current view position to the display.
addFrames(libdt.PatchExtractor, libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Add a new function point to the current LUT transfer function.
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: /
addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Add a new function point to the current LUT transfer function.
addFunctionToLUT() - Method in class gov.nih.mipav.model.file.FileImageXML: Adds the LUT functions collected within the functionVector.
addFunctionToRGB() - Method in class gov.nih.mipav.model.file.FileImageXML: Adds the ModelRGB functions contained within the functionVector.
addGattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new global attribute array element with the specified parameters into the global attribute array at the given index.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Add a new geodesic component to the TriMesh surface display.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a geodesic element to the surface display.
addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add a new geodesic component to the surface.
AddGeodesic(Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Add a new geodesic component to the surface.
addGiniImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
addGM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Add the gradient magnitude histogram to the opacity control panel.
addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Add the gradient magnitude histogram to the opacity control panel.
addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.
addGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Add the gradient magnitude hitogram to the opacity control panel.
AddGroundtruth(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Add ground truth from give image and voi
AddGroundtruths(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Add ground truth
addGroup(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter: DOCUMENT ME!
addGuideLine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Draw the red guiding line along the start and end point.
addImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Add model image into the capture frame.
addImage(String, String, String, Integer, Integer, Integer, Integer, Integer, Float, Float, Float, Float, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: browse button
addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: browse button
addImageDisplayListener(ViewImageUpdateInterface) - Method in class gov.nih.mipav.model.structures.ModelImage: Add a listener to this class so that notifyListener can be used to notify all listeners to update the display of the image.
addImageRegistryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ImageRegistryMonitor: add a memory change listener.
addImpl(Component, Object, int) - Method in class gov.nih.mipav.view.JScrollPopupMenu
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
addInclude(Integer, URI, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: need these functions to create the classes within..
addInputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Adds an image register as an input-image
addInsertionPoint(Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds a point to the lattice.
addInstrument(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addIntensityLock(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Adds an Integer object to the intensityLockVector.
AddInterior(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Add articifial interior points to the shape by making a Delaunay triangulation and adding the centroid of each triangle.
addItem(int, float, boolean, Point3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Create a new annotation item with the specified information and add the item to the end of the list.
addItem(int, float, boolean, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Create a new annotation item with the specified information and add the item to the end of the list.
addItem(FileDicomSQItem) - Method in class gov.nih.mipav.model.file.FileDicomSQ: Add an item to the sequence vector.
addItem(FlyPathAnnotateList.Item) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList: Add the specified annotation item to the end of the list.
addItem(FlyPathAnnotateList_WM.Item) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM: Add the specified annotation item to the end of the list.
addItemToRender(ContourPlot.Renderable) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer: Adds the specified item to the corresponding renderer.
addItemToRender(T) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer: Adds an item to this renderer's ContourPlot.GenericRenderer.itemsToRender list.
additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: label for browsing for additional images
additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: label for browsing for additional images
additionalImagesList - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: list of any additional images browsed to
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: additional images to concat...the ones you add later on
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: additional images to concat...the ones you add later on
additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: additional images to concat...the ones you add later on
additionalPluginDirList - Static variable in class gov.nih.mipav.plugins.PluginUtil
additionalSets - Variable in class gov.nih.mipav.model.file.FileImageXML: A listing of all the additional PSets to be written into the saved file.
additionalTagsList - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
ADDITIVE - Static variable in class gov.nih.mipav.model.structures.VOI: Mask as ones - i.e. put ones to indicate VOI location
addJarContext(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
addJustVerificationAbstractSyntax() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Adds just the verification syntax for DICOM verification process.
addkernel - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
addKey(String, String, String) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
addKeysToAllowList(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
addLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: ***************************************************************************************************** Creating labels
addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
addLayoutComponent(String, Component) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
addLeadingZeros(int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads zeros to a number.
addLeadingZeros(String, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util: Pads zeros to a string representation of a number.
addLeftRightMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addLeftRightMarker(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Adds a new left/right marker to the worm image.
addLightSource(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addLightSourceRef(Integer, Integer, String, Float, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Adds a scriptable action to an image's data provenance
addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Add a line to the current script by requesting a script action to generate its script line.
addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder: Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
addLineArray(LineArray, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called from the JDialogDTIInput.
addLineLabel(double, int, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineLabel(double, int, String) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineLabel(double, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend: Adds a label for a line to this legend.
addLineSegment(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
addList() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
addListener - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
addListener(AlgorithmInterface) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Add a listener to this class so that when when the algorithm has completed processing it can use notifyListener to notify all listeners that the algorithm has completed.
addListeners() - Method in class gov.nih.mipav.view.ViewFileChooserBase: Adds all listeners required by this accessory.
addLUValue(String) - Method in class gov.nih.mipav.model.file.FileImageXML: Adds LUValue for either LUT or modelRGB.
addMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.MatrixHolder: Adds a matrix to the map. matrices will be keyed by their type and sequential numbering
addMemoryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: add a memory change listener.
addMenuDragListener(Component, MenuDragMouseListener) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Attaches a MenuDragMouseListener to comp and all of its sub-components (if comp is a JMenu/JMenuItem.
addMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: ReplaceMesh is used by the Geodesic when a mesh is cut.
addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic: Add new mesh to the volume rendering.
addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Called when a mesh is changed by the Geodesic class, when a mesh is cut along the geodesic curve it may be divided into two or more meshes.
addNeurite(VOI, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Generates a natural spline curve to fit the input set of annotation points to model a neurite.
addNeurite(String, String[], ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addNode - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: When true the dialog creates a new node, otherwise it is used to edit the Notes.
addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
addNode(int, int, AlgorithmNetworkSnake.AnchorPosition) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
addNode(String, String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Add a new node under the picked node.
addNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a new display node to the volume/surface display list.
AddNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase: Add a new scene-graph node to the display list.
addNodeDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
addNormals(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
addNoSplitVariable(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
addObjective(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addObserver(Observer) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
addObserver(Observer) - Method in interface gov.nih.mipav.model.util.Observable: Adds an observer to the set of observers for this object, provided that it is not the same as some observer already in the set.
ADDON - Variable in class gov.nih.mipav.model.algorithms.CVODES
addon_message_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
addOnNextLine(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel on a new line (vertically).
addOnNextLine(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager: Adds a new component to the panel on a new line (vertically).
addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Helper method that adds components to the control panel for the grid bag layout.
addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Helper method that adds components to the control panel for the grid bag layout.
addOTF(Integer, Integer, Integer, String, Boolean, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument: DOCUMENT ME!
addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
addOutputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
addPadding(ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Pad an image by copying the first and last slices 2 more times so that the laplacian algorithm behaves well in edge conditions.
addParam - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: menu item for adding parameter.
addParameter(String) - Method in class gov.nih.mipav.model.file.XMLPSet: Adds a new parameter to the set.
AddParameter(Matrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
AddParameterBlock(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddParameterBlock(double[], int, CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddParameterBlock(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
addParameterData(String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay: Adds a new row of parameter data to the display's table.
addParentTag(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
addPath(T, byte[]...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie: Store the given value at the specified path.
AddPath(CAAMShape, CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Adds a path to the shape.
addPixelLine(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
addPlate(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addPluginDirectory(String) - Static method in class gov.nih.mipav.plugins.PluginUtil
addPluginToMenu(Class<?>, String, String, JMenu, ActionListener, String) - Method in class gov.nih.mipav.view.ViewUserInterface
addPoint(float, float) - Method in class gov.nih.mipav.model.structures.TransferFunction: Adds a point to the function at the end.
addPoint(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
addPoint(int, int) - Method in class gov.nih.mipav.model.structures.PointStack: Adds a point to the arrays.
addPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
addPoint(Vector2f) - Method in class gov.nih.mipav.model.structures.TransferFunction: Adds a point to the function at the end.
addPointCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Standard cursor: add a point (hand).
addPointCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
addPointFlag - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: DOCUMENT ME!
addPointFlag - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: DOCUMENT ME!
addPointToFunction(String) - Method in class gov.nih.mipav.model.file.FileImageXML: Adds a point to the function associated with the LUT or modelRGB.
addPointToggleButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: Toggle buttons for voi/points
addPolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add polyline to the render.
addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI: Add a polyline to the display.
addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add a polyline to the VolumeDTI display.
addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
addPopup(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Link the popup menu to the input voi so the popup menu will operate on the input voi.
addPreambleAndGroupTwoTags(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Builds buffer of DICOM part 10 preamble and require Part 10 group 2 tags.
addPresentationContext(DICOM_PresentationContext) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Adds a presentation object to a vector list of presentation contexts.
addPresentationContextAccept(DICOM_PresentationContextAccept) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC: Adds the presentation context to the accepted context list.
addProcessLoggingNotifier(JTextArea) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: a list of JTextAreas to be notified when a change in the process/output log is made. this permits almost-real-time updates to output devices this method adds the selected list of JTextAreas to receieve the output logs.
addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Adds the ProgressChangeListener to this FileBase object.
addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.file.FileBase: Adds the ProgressChangeListener to this FileBase object.
addProject(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addProjectRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset: DOCUMENT ME!
addProvenanceChangeListener(ProvenanceChangeListener) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder: Adds a listener (JDialogDataProvenance) to receive notifications
addProvenanceData(ProvenanceEntry) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: Adds an entry to the Model (shows on table)
addPset(String, XMLPSet) - Method in class gov.nih.mipav.model.file.FileInfoImageXML
addQE(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
AddRandomBlock(int, int, int, int, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
addRawOptionsToParameters(ParameterTable, FileInfoBase) - Static method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage: Adds parameters to a table, describing a raw image.
AddRealRoot(Vector<Double>, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
addRegion(int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Panel to push/pull VOIs from full list to selectable list.
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Panel to push/pull VOIs from full list to selectable list.
addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel to push/pull VOIs from full list to selectable list.
addReplaceMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Add as New/Replace button (depending on selected matrix type).
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
AddResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
address - Variable in class gov.nih.mipav.model.file.FileInfoCZI
AddResult(CAAMShape, CAAMShape, double, CAAMOptRes) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Adds a new result to the back.
AddResults(CAAMEvaluationResults) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults: Adds a new set of results to the back.
addROI(Integer, Integer, Integer, Integer, Integer, Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions: DOCUMENT ME!
addRow(ViewTableModel, Object[], boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Determines whether the given row should be shown.
addRunnable(Runnable, String, int, int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti: Basic method for registering an algorithm to the multi-bar.
addSaveOptionsToParameters(ParameterTable, FileWriteOptions, int[]) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Add the save options needed to record the saving of an image to a parameter table.
addScaled(Polynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
addScaled(PPolynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
AddScaled(NVectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
AddScaled(Polynomial, double, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(Polynomial, double, Polynomial, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(Polynomial, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
AddScaled(VectorD, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
AddScaled(VectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
addScannerLabels(String, Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: DOCUMENT ME!
addSchwarzChristoffelLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph
addScreen(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME: DOCUMENT ME!
addScreenRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate: DOCUMENT ME!
addScriptActionLocation(String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Adds a new package where we should look for scriptable actions.
addScriptRecordingListener(ScriptRecordingListener) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder: Adds a class to the recorder's list of listeners.
addScriptVOI(ScriptVOI) - Method in class gov.nih.mipav.view.dialogs.ScriptImage
addScrollList(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
addSegment(byte, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData: Adds segment bytes to the collection.
addSegment(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Adds a new line segment to this object.
addSegment(Point2D, Point2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines: Adds a new line segment to this object.
addSelectionPaths(TreePath[]) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
addSeparator() - Method in class gov.nih.mipav.view.JScrollMenu
addSeriesData(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: AddSeriesData This method populates the series table based upon the studyID.
addSet - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for adding sets.
addShape(Object, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder: DOCUMENT ME!
AddShapeExtends(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Adds an extra outer path on each outer path in the distance of 'nPixels' along the point normal.
addShortcut - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: add shortcut button.
addShortcut(String) - Static method in class gov.nih.mipav.view.Preferences: Adds a new shortcut to the hashtable. if there is already a command predefined for the keystroke set from setShortcut(), it will be removed then replaced with the new command.
addShortcut(String, KeyStroke) - Static method in class gov.nih.mipav.view.Preferences: Adds a new shortcut to the hashtable with a given keystroke. if there is already a command predefined for the keystroke set from setShortcut(), it will be removed then replaced with the new command.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM: Adds the VolumeSlices object to the display list for rendering.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Adds the VolumeSlices object to the display list for rendering.
addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Pass the VolumeSlices from the Volume Renderer to the PlaneRender objects.
addSnpData(char[], int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
addSortButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: DOCUMENT ME!
addSpecular(SoftwareMaterial, SoftwareVertexProperty, Vector3f, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: Calculate the color due to specular lighting.
addSphere(Vector3f, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addSphereVOIs(VOI) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameImage
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Add a curve to the list.
addStatusPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Method that adds components to the control paenl.
addStringToTable(byte[]) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Add a new string to the string table.
addStringToTable(byte[], byte) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder: Add a new string to the string table.
addStudyData(FileInfoDicom) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Adds the study data to the table.
addsub(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
addsub(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.ReminderThread: DOCUMENT ME!
addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.TimeoutThread: DOCUMENT ME!
addSubTree(Graph, Node, Node, Component[], int) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Function recursively creates a tree structure based on an array of menu components.
addSurface - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: button for adding surfaces.
addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Add surface to the volume image.
addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Sets up the surface by setting the color of the material to black, setting the polygon to no cull-face and a fill mode, and allowing intersections in case we want picking ability.
addSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add surface to the volume image.
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add surfaces to the display list.
addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Add TriMesh surfaces to the Volume Renderer.
addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add surfaces to the display list.
addSurface(SurfaceState, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addSurface(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Adds a surface path to the image's surface list.
addSurface(String, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay: Add a surface to the table.
addSurface(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Adding surface to the 3D texuture volume.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Add a surface to the display list.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM: Add new mesh to the volume rendering.
addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addSurface(TriMesh, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender: Add the fly-through surface.
addSurfaceMask(int, BitSet, ColorRGBA[], ColorRGBA) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Adds a surface mask to this image.
addSurfaces(SurfaceAttributes[], boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adds an array of surfaces described by their SurfaceAttributes to the scene graph.
addSurfaces(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Adding the surface with specific directory and file name.
addSurfaces(TriMesh[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Add surfaces to the Volume Tri-Planar renderer.
addTab(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Adds a tab to the MessageFrame tabbed pane with the given Title.
addTabbedPane() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Called when the volumePositionFrame closes, the volumePositionPanel is again displayed in the window:.
addToAvailableImageList(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addToAvailableImageList(String, String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addToEnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass: DOCUMENT ME!
addToFile(Class, ArrayList<Class>) - Method in class gov.nih.mipav.plugins.ManifestFile
addToList(Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList: Add a parameter to the end of the list.
addToModelClip(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Add a new branch group to model clip for clipping.
addToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Add surface volume renderer control buttons.
addToPane() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer: Adds what the container just built (based on the given inputs) to the component barPanel.
addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Adds a component to the top panel.
addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Adds a component to the top panel.
addToTempDirList(String) - Static method in class gov.nih.mipav.view.ViewUserInterface
addToTerminalNodes(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
addTract() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Updates the tract list user-interface.
addTract(VOIContour, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel: Adds a fiber bundle tract to the GPUVolumeRender and JPanelSurface.
addTract(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Add tract into the DTI display
addTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext: Adds a new transfer syntax to the list (ie. vector)
addTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
addTriangle(delaunay.Site, delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
AddTriangleIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangleIndices(float[], float, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangleIndices(int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(double[], double, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(float[], float, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
AddTriangles(CoredMeshData, Vector<CoredPointIndex>[], Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
AddTriangles(CoredMeshData, Vector<CoredPointIndex>, Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
addValue - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 112 - value to add to pixels.
addVarElem(String, int, int[], int) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Puts a new variable element with the specified paramenters into the array at the given index.
addVattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Adds an attribute element to the variable attribute array.
addVattValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem: Sets the value of a variable attribute element.
addVectorListener(VOIVectorListener) - Method in class gov.nih.mipav.model.structures.VOIVector: adds the update listener.
addVertex(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
AddVertex(Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
addVOI(ModelImage, VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addVOI(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector: Adds voi to the voi vector
addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Add a new VOIBase.
addVOI(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML: Adds a voi path to the image's VOI list.
addVOI(String, String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
addVOIListener(VOIListener) - Method in class gov.nih.mipav.model.structures.VOI: adds the update listener.
addVOIManager(ModelImage, ModelImage, Component, ScreenCoordinateListener, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Adds a point to the current voi.
addVOIs(VOIVector) - Method in class gov.nih.mipav.model.structures.ModelImage: adds VOI vector for with new VOIs.
addVOIS(VOIVector, Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
addVOIsToCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
addVOIUpdateListener(UpdateVOISelectionListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Adds a UpdateVOISelectionListener.
addVOIUpdateListener(UpdateVOISelectionListener) - Method in interface gov.nih.mipav.view.VOIHandlerInterface: Add a UpdateVOISelectionListener so it will receive VOI selection updates.
addVolumeVOI(VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
addWhiteListedKeys(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Deprecated.
JPanelAnonymizePanelTags#addKeysToAllowList(ArrayList,ArrayList)
adids - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.DiscretInteg
ADJ_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Use adjacency model to perform triangle consistency.
adj_ranks - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
adjacencies - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
AdjacencyCountFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AdjacencyCountFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
AdjacencySetFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AdjacencySetFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
adjacent - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
ADJACENT_BACK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Copy adjacent slice.
ADJACENT_DOWN - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Copy adjacent slice.
ADJACENT_DOWN_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
ADJACENT_NEXT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Copy adjacent slice.
ADJACENT_UP - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Copy adjacent slice.
ADJACENT_UP_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjacentDown - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
adjacentUp - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
adjCfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjE(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjGKN(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: adjusted image.
adjInvF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: number of VOIs for adjustable slice
adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: adjusted marker type.
adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
adjncy - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
adjPPFT(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjRadon(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjU(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
adjust_amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
adjustBins(int[], int[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustExp - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: adjust exp *
adjustExp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: adjust exp *
adjustExp - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: adjust exp *
adjustExpPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
adjustExpPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
adjustExpSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
adjustExpSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
adjustExpTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
adjustExpTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
adjustGradientBins(VabraVolumeCollection, double, double, double, int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ColorWheel: adjust green intensity
adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage: adjust green intensity
adjustmentValueChanged(AdjustmentEvent) - Method in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
adjustOpacityFor000Color() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: >>>>>>> .r533 The purpose of this method is to examine both LUTs to determine if they are zero-based, that is, if they map values of zero to the color R=0, G=0, B=0.
adjustOrigBins(int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
adjustPvalues(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
adjustScrollbars(int, int) - Method in class gov.nih.mipav.view.ViewJFrameImage: DOCUMENT ME!
adjustScrollbars(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This method adjust the scrollbars to area where user clicked when doing individual frame zooming in and out.
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: DOCUMENT ME!
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: DOCUMENT ME!
adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Adjust the translation of the transformation matrix by the sample pararmeter.
adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
adjwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
admm_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ADMM_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
admm_seq_conv_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ADMM_SEQ_CONV_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Adobe_transform - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
AdobeJpegDescriptor(MetadataExtractor.AdobeJpegDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
AdobeJpegDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory
AdobeJpegReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
AdobeJpegReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest
adOpDialog - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
adOpString - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
adOpString - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Advanced function string.
adp_step_pgd_stop_func(int[], String[], NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.stop_opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
adub - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
adv(int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER: Advance N-dimensional subscript
ADVANCED - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
advancedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: DOCUMENT ME!
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Variables for Advanced Settings dialog.
advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Variables for Advanced Settings dialog.
advanceVOIUID() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface: Increments the VOI uid for internal tracking, used during both creation and loading of a new VOI
AdvancingFront - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
AdvancingFront(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
AdvancingFront.AdvancingTest - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
AdvancingTest(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest
advDecOptDialog - Variable in class gov.nih.mipav.model.file.FileJP2: The height of image
adwgts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
AE - gov.nih.mipav.model.file.FileDicomTagInfo.VR
aExp - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
afc(Vector<Integer>, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
afcmAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
affiliation - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator: Affiliation of investigator.
affine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
Affine() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Affine
AFFINE - gov.nih.mipav.model.algorithms.SIFT3D.tform_type
Affine_set_mat(SIFT3D.Mat_rm, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
affineTransform(double[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: The input 4x4 homogeneous matrix H is assumed to multiply vectors V as H*V where V = (x,y,z,1).
affineTransform(float[][], float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Rotation R is 3x3, translation T is 3x1, and scale S is 3x1.
AFInfo() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo
AFNI - Static variable in class gov.nih.mipav.model.file.FileUtility: AFNI file type. extension: .head, .brik
AFNI_ACPC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type ACPC.
AFNI_ORIG - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type Original.
AFNI_TLRC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: AFNI view type Talairach.
afniEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices: DOCUMENT ME!
afniGroup - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
afniGroupArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
AFNIOrigExtents - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNIOrigResolutions - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNITypeString - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFNIViewType - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
AFPintoDFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
AFPintoDFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
AFPintoFRET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: DOCUMENT ME!
AFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
AFTER - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Before/After index values for the two displayed spheres, canvases, and display panels:.
AFTER - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Before/After index values for the two displayed spheres, canvases, and display panels:.
afterExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
afterThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
afTimeC - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
agastDetector_5_8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
AgastDetector5_8 - Class in gov.nih.mipav.model.algorithms: agast5 - AGAST, an adaptive and generic corner detector based on the accelerated segment test for a 8 pixel mask Copyright (c) 2010, Elmar Mair All rights reserved.
AgastDetector5_8(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AgastDetector5_8
agcieAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGCIE: DOCUMENT ME!
Age() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
Age(int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
AgeTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AgeTest
AgglomerativeInformationBottleneck - Class in gov.nih.mipav.model.algorithms: Copyright (C) 2007-11, Andrea Vedaldi and Brian Fulkerson Copyright (C) 2012-13, The VLFeat Team All rights reserved.
AgglomerativeInformationBottleneck() - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
AgglomerativeInformationBottleneck(ModelImage, int, int, double[][], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
AgglomerativeInformationBottleneck.VlAIB - Class in gov.nih.mipav.model.algorithms: ------------------------------------------------------------------
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
AGGREGATED_CIRCLES_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE_RANDOM_ORIENTATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
AGGREGATED_ELLIPSE_RANDOM_ORIENTATION_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
aggregatedCirclesDifferentSizesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseRandomOrientationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
aggregatedEllipseRandomOrientationDifferentSizes - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
agvfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
Ah - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
aicAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
AICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AIF_conc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_diffPeak - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_enable - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_cv_est_parGV - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_gv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_parameters - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_fit_weights - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nSlice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nSliceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nSliceText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
aif_nVoxelMax - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_nVoxelMin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pArea - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pReg - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_pTTP - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_recirculation - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI_x - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_ROI_y - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_semiMajorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aif_semiMinorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIF_voxels - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
AIFslice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
Ain - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
aindaneAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
airPressure - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Airy function Ai.
AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Airy function Ai.
AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Airy function Bi.
AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Airy function Bi.
aki - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
akMVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of mesh points.
akNormal - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: normal vector arrayes.
akPVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of plane points.
akr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
akSVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines: Array of sphere points.
Al - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
Al - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
alertBackground(JTextField, boolean) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2: parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with ier[0] = 6.
alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with errorStatus = 6.
ALFA02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
ALFA12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alg - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: handle to BSE Algorithm *
alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alg - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: handle to the algorithm *
alg - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: handle to alg
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: handle to the algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: handle to algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: algorithm
alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: algorithm
alg - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: handle to the algorithm *
alg - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
alg - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
alg_name - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alg2D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
alg3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
ALGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
algCont - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List of containers that hold all the information to correctly draw each progress bar
algdiv(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
algList - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: List containing which runnables are registered to this listener
algo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
algo - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Use serialVersionUID for interoperability.
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Use serialVersionUID for interoperability.
algo - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
algoAutoCorrelation - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: DOCUMENT ME!
algoAutoCovariance - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: DOCUMENT ME!
algoColorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
AlgoContainer(String, int, int) - Constructor for class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer
algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Algorithm that implement cost functions, either a AlgorithmCostFunctions or AlgorithmCostFunctions2D
algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Is either a AlgorithmCostFunction or a AlgorithmCostFunctions2D depending on images
algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
algoLocal - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
algoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel: DOCUMENT ME!
algoQuantify - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify: DOCUMENT ME!
algoRegVOILankmark - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: DOCUMENT ME!
algoReplace - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: DOCUMENT ME!
algorID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: algorithm type (i.e. erode, dilate)
algorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
algorithm - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
algorithm_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
Algorithm4DImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities
Algorithm4DImageCalculator() - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: constructor
Algorithm4DImageCalculator(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: constructor
AlgorithmActiveContoursWithoutEdges - Class in gov.nih.mipav.model.algorithms
AlgorithmActiveContoursWithoutEdges(ModelImage, ModelImage, int, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
AlgorithmAdaptiveKuwaharaFilter - Class in gov.nih.mipav.model.algorithms.filters: This algorithm is created from the description provided in the article: "Adaptive Kuwahara Filter" by Krzysztof Bartyzel, Published online July 6, 2015.
AlgorithmAdaptiveKuwaharaFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
AlgorithmAdaptiveKuwaharaFilter(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
AlgorithmAddMargins - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to add or remove margins around the image.
AlgorithmAddMargins(ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Add or remove margins from the srcImage.
AlgorithmAddMargins(ModelImage, ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Add or remove margins from the srcImage and store the results in the destImage.
AlgorithmAGCIE - Class in gov.nih.mipav.model.algorithms
AlgorithmAGCIE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE: Reference: An Adaptive Gamma Correction for Image Enhancement by Shanto Rahman, Md Mostafijur Rahman, M.
AlgorithmAGCIE(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
AlgorithmAGVF - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm deriviative.
AlgorithmAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Creates a new AlgorithmAGVF object.
AlgorithmAHE - Class in gov.nih.mipav.model.algorithms: algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmAHE(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE: Constructor for images in which changes are returned to the source image.
AlgorithmAHE(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmAHElocal - Class in gov.nih.mipav.model.algorithms: algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmAHElocal(ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Constructor for images in which changes are returned to the source image.
AlgorithmAHElocal(ModelImage, ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmAINDANE - Class in gov.nih.mipav.model.algorithms
AlgorithmAINDANE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
AlgorithmAINDANE(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
AlgorithmAnisotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters: This algorithm anisotropically diffuses an image.
AlgorithmAnisotropicDiffusion(ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates a new AlgorithmAnisotropicDiffusion object.
AlgorithmAnisotropicDiffusion(ModelImage, ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Creates a new AlgorithmAnisotropicDiffusion object.
AlgorithmAntigradient2 - Class in gov.nih.mipav.model.algorithms: This is a port of the files anitgradient2.m and antigradient2.c created by Gunnar Farneback in the Spatial domain toolbox at http://www.imt.liu.se/mi/Tools.
AlgorithmAntigradient2() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AlgorithmAnyTwoImagesSNR - Class in gov.nih.mipav.model.algorithms
AlgorithmAnyTwoImagesSNR(ModelImage, ModelImage, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR: Creates a new AlgorithmAnyTwoImagesSNR object.
AlgorithmArcLength - Class in gov.nih.mipav.model.algorithms: This algorithm calculates the arc-length of a Bspline fit to user defined control points.
AlgorithmArcLength(float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Algorithm constructor.
AlgorithmArcLength(float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength: Algorithm constructor.
AlgorithmASM - Class in gov.nih.mipav.model.algorithms
AlgorithmASM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM
AlgorithmASM.AppData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.ASMData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.FileMATLAB - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.LandData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.Options - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.P - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.PData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.SData - Class in gov.nih.mipav.model.algorithms
AlgorithmASM.TData - Class in gov.nih.mipav.model.algorithms
AlgorithmAutoCorrelation - Class in gov.nih.mipav.model.algorithms: Reference: Digital Image Processing, Second Edition by Rafael C.
AlgorithmAutoCorrelation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Constructor for black and white image in which correlation coefficients are placed in a predetermined destination image.
AlgorithmAutoCorrelation(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: Constructor for color image in which correlation coefficients are placed in predetermined destination images.
AlgorithmAutoCorrelation.FitCorrelationModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmAutoCovariance - Class in gov.nih.mipav.model.algorithms: let deli(x,y) = (i(x,y) - )/ where the angle brackets are used to denote a spatial average.
AlgorithmAutoCovariance(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Constructor for black and white image in which covariance coefficients are placed in a predetermined destination image.
AlgorithmAutoCovariance(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: Constructor for color image in which covariance coefficients are placed in predetermined destination images.
AlgorithmAutoCovariance.FitCovarianceModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmAutoSeedWatershed - Class in gov.nih.mipav.model.algorithms: This is a port of the file AutoSeedWatershed.cpp which calls openCV written by Ravimal Bandara.
AlgorithmAutoSeedWatershed(ModelImage, ModelImage, float, float, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed: Constructs new watershed algorithm.
AlgorithmBarrelDistortion - Class in gov.nih.mipav.model.algorithms: Corrects barrel and/or pin cushion distortion for 2D images.
AlgorithmBarrelDistortion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: AlgorithmBarrelDistortion - default constructor.
AlgorithmBarrelDistortion(ModelImage, ModelImage, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: AlgorithmBarrelDistortion.
AlgorithmBase - Class in gov.nih.mipav.model.algorithms: Base abstract class for algorithms.
AlgorithmBase() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase: Default constructor which sets thread stopped to false, source and destination images to null, and destination flag to false.
AlgorithmBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase: Constructor which sets thread stopped to false and sets source and destination images.
AlgorithmBilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: Bilateral filtering smooths an image or VOI region of the image while preserving edges with 2 Gaussian functions.
AlgorithmBilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
AlgorithmBilateralFilter(ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Creates a new AlgorithmBilateralFilter object.
AlgorithmBilateralFilter(ModelImage, ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter: Constructor which sets the source and destination images, the minimum and maximum progress value.
AlgorithmBoundaryAttenuation - Class in gov.nih.mipav.model.algorithms.filters: Attenuate around the boundary of an object defined by a VOI in an image volume.
AlgorithmBoundaryAttenuation(ModelImage, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: Set up the algorithm.
AlgorithmBoxCount - Class in gov.nih.mipav.model.algorithms
AlgorithmBoxCount(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
AlgorithmBrainExtractor - Class in gov.nih.mipav.model.algorithms: A class for segmenting the brain from a 3D MRI.
AlgorithmBrainExtractor(ModelImage, int, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBrainExtractor(ModelImage, int, TriMesh, int, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBrainExtractor.Edge - Class in gov.nih.mipav.model.algorithms: A representation of an edge for the vertex-edge-triangle table.
AlgorithmBrainExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms: An unordered set of 'int' stored in an array.
AlgorithmBrainSurfaceExtractor - Class in gov.nih.mipav.model.algorithms: This class provides an implementation of a second method for segmentation of the brain from a 3D MRI, as opposed to the BET algorithm implemented in AlgorithmBrainExtractor.
AlgorithmBrainSurfaceExtractor(ModelImage, int, float, float, boolean, int, float, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Create an extractor for segmenting the brain from a 3D magnetic resonance image.
AlgorithmBRISK - Class in gov.nih.mipav.model.algorithms: BRISK - Binary Robust Invariant Scalable Keypoints Reference implementation of [1] Stefan Leutenegger,Margarita Chli and Roland Siegwart, BRISK: Binary Robust Invariant Scalable Keypoints, in Proceedings of the IEEE International Conference on Computer Vision (ICCV2011).
AlgorithmBRISK() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK: AlgorithmBRISK - default constructor.
AlgorithmBRISK(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
AlgorithmBRISK(ModelImage, ModelImage, boolean, int, int, int, boolean, boolean, double, Vector<Double>, Vector<Integer>, double, double, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
AlgorithmBRISK.BriskLayer - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskLongPair - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskPatternPoint - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.BriskShortPair - Class in gov.nih.mipav.model.algorithms
AlgorithmBRISK.KeyPoint - Class in gov.nih.mipav.model.algorithms
algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Compute the brute-force solution.
algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Compute the brute-force solution.
AlgorithmBSmooth - Class in gov.nih.mipav.model.algorithms: Smoothing of VOI using 1 iteration of bSplines.
AlgorithmBSmooth() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
AlgorithmBSmooth(ModelImage, VOI, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Creates a new AlgorithmBSmooth object.
AlgorithmBSnake - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm derivative using BSplines.
AlgorithmBSnake(ModelImage, float[], int, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Set up the snake algorithm so that it can be run.
AlgorithmBSpline - Class in gov.nih.mipav.model.algorithms: Modified code from Aaron Carass's Java implementation of Philippe Thevenaz's Cubic B-spline Interpolation.
AlgorithmBSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSpline: default constructor.
AlgorithmBSpline.ColorInterpolation - Class in gov.nih.mipav.model.algorithms
AlgorithmBSplineControlPointImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmBSplineControlPointImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
AlgorithmBSplineScatteredDataPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmBSplineScatteredDataPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
AlgorithmCannyEdgeDetection - Class in gov.nih.mipav.model.algorithms
AlgorithmCannyEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: AlgorithmCannyEdgeDetection - default constructor.
AlgorithmCannyEdgeDetection(ModelImage, ModelImage, double, double, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection: AlgorithmCannyEdgeDetection.
AlgorithmCellTrackingAGVF - Class in gov.nih.mipav.model.algorithms: Active Contour class optimized for Cell Tacking, based on the following paper:
AlgorithmCellTrackingAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean, float, float, float, float, boolean, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF: Creates a new AlgorithmCellTrackingAGVF object.
AlgorithmCenterOfMass - Class in gov.nih.mipav.model.algorithms: This algorithm calculates the center of mass for 2D and 3D black and white images.
AlgorithmCenterOfMass(ModelImage, float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Creates a new AlgorithmCenterOfMass object.
AlgorithmCenterOfMassRGB - Class in gov.nih.mipav.model.algorithms: * This algorithm calculates the red, green, and blue center of mass for 2D and 3D color images.
AlgorithmCenterOfMassRGB(ModelImage, float[], float[], float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Default constructor for running algorithm to calculate red, green, and blue centers of mass.
AlgorithmChangeType - Class in gov.nih.mipav.model.algorithms.utilities: This is a convenience function to convert from one image type to another and remap the data into a new range.
AlgorithmChangeType(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Creates a new AlgorithmChangeType object.
AlgorithmChangeType(ModelImage, ModelImage, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: Creates a new AlgorithmChangeType object.
AlgorithmCircleGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned circles with a specified radius.
AlgorithmCircleGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: AlgorithmCircleGeneration - default constructor.
AlgorithmCircleGeneration(ModelImage, int, int, int, int, double, double, double, double, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration: AlgorithmRandomCircleGeneration.
AlgorithmCircleGeneration.erfcModel - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.erfcModel2 - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmCircleToRectangle - Class in gov.nih.mipav.model.algorithms: References: 1.)
AlgorithmCircleToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: AlgorithmCircleToRectangle - default constructor.
AlgorithmCircleToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle: AlgorithmCircleToRectangle.
AlgorithmCircularSectorToRectangle - Class in gov.nih.mipav.model.algorithms: This software uses 2D conformal mapping in converting a circular sector defined by 4 user points at the sector corners to a rectangle of user specified size.
AlgorithmCircularSectorToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: AlgorithmCircularSectorToRectangle - default constructor.
AlgorithmCircularSectorToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle: AlgorithmCircularSectorToRectangle.
AlgorithmCoherenceEnhancingDiffusion - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply Coherence Enhancing Anisotropic Diffusion
AlgorithmCoherenceEnhancingDiffusion(ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Creates a new AlgorithmCoherenceEnhancingDiffusion object.
AlgorithmCoherenceEnhancingDiffusion(ModelImage, ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion: Creates a new AlgorithmCoherenceEnhancingDiffusion object.
AlgorithmColocalizationEM - Class in gov.nih.mipav.model.algorithms: An optional registration may be performed before colocalization.
AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationRegression - Class in gov.nih.mipav.model.algorithms: This algorithm creates a 2D histogram from 2 colors of a single image or from 2 black and white images and uses an orthogonal line fit of the histogram data to generate a correlation line thru the histogram.
AlgorithmColocalizationRegression(ModelImage, ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColocalizationRegression(ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmColorEdge - Class in gov.nih.mipav.model.algorithms.filters: This algorithm uses a hypercomplex filter to find the edges between a region of two user specified colors.
AlgorithmColorEdge(ModelImage, ModelImage, long, long, long, long, long, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: This constructor initialises a Color Edge algorithm for a source and destination image, and ensures that the destination image is ModelStorageBase.UBYTE.
AlgorithmColorSaturation - Class in gov.nih.mipav.model.algorithms: This algorithm changes the saturation of a color image while keeping the hue and intensity constant.
AlgorithmColorSaturation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: AlgorithmColorSaturation - default constructor.
AlgorithmColorSaturation(ModelImage, ModelImage, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation: AlgorithmColorSaturation.
AlgorithmComplexConcat - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that generates a complex image from real data and imaginary data.
AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmComplexToReal - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a single greyscale image.
AlgorithmComplexToReal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmComplexToReal(ModelImage, ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Creates a new AlgorithmComplexToReal object.
AlgorithmConcat - Class in gov.nih.mipav.model.algorithms.utilities: Assumes the pixel resolutions are equal.
AlgorithmConcat(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: Creates a new AlgorithmConcat object.
AlgorithmConcatMult - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult() - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult
AlgorithmConcatMult2Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D: constructor
AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D: constructor
AlgorithmConcatMult3Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: constructor
AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D: constructor
AlgorithmConcatMult3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: constructor
AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D: constructor
AlgorithmConstELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC for a 3D image.
AlgorithmConstELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmConstPowellOpt3D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 3D image.
AlgorithmConstPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmConstPowellOptBase - Class in gov.nih.mipav.model.algorithms: Powell's Method
AlgorithmConstPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
AlgorithmConstrainedELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedELSUNCOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmConstrainedOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmConstrainedOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmConstrainedOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmContrastEnhancementUsingExposureFusion - Class in gov.nih.mipav.model.algorithms
AlgorithmContrastEnhancementUsingExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
AlgorithmContrastEnhancementUsingExposureFusion(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
AlgorithmContrastEnhancementUsingExposureFusion.kFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmConvergenceField - Class in gov.nih.mipav.model.algorithms
AlgorithmConvergenceField(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvergenceField
AlgorithmConvert3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities: Converts a 3D dataset that is really a 4D dataset into a 4D dataset.
AlgorithmConvert3Dto4D(ModelImage, int, float, float, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D: Constructs new algorithm and sets source.
AlgorithmConvert4Dto3D - Class in gov.nih.mipav.model.algorithms.utilities: The image is converted from a 4D to a 3D image.
AlgorithmConvert4Dto3D(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Constructs new algorithm and sets source.
AlgorithmConvert4Dto3D(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D: Constructs new algorithm and sets source.
AlgorithmConvolver - Class in gov.nih.mipav.model.algorithms: Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver: Sets the source and kernel images and calls the appropriate method based on image dimensionality.
AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
AlgorithmCorrectSpacing - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to adjust image volume for cases when the slice spacing is not equal to the slice thickness.
AlgorithmCorrectSpacing(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing: Import source image into the class.
AlgorithmCostFunctions - Class in gov.nih.mipav.model.algorithms: CostFunction - class for specifying optimization function.
AlgorithmCostFunctions(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: Creates a new AlgorithmCostFunctions object.
AlgorithmCostFunctions2D - Class in gov.nih.mipav.model.algorithms: CostFunction - class for specifying optimization function.
AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: Creates a new AlgorithmCostFunctions2D object.
AlgorithmCrop - Class in gov.nih.mipav.model.algorithms.utilities: Crops 2D and 3D images using a supplied VOI.
AlgorithmCrop(ModelImage, ModelImage, int, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: Creates new algorithms to crop image by specified bounds.
AlgorithmCropTilted - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to crop a tilted rectangle
AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: Rotate tilted cuboid to remove tilt and crop cuboid.
AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted: Rotate tilted rectangle to remove tilt and crop rectangle.
AlgorithmCubicLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 3 which interpolates a given function f at the points x(-1), x(0), x(1), and x(2), and is given by p(x) = sum from i = -1 to i = 2 of li(x)*f(xi), where li, i = -1,0,1,2, which are called the fundamental polynomials, are given by li(x) = product from k = -1 to k = 2 for k !
AlgorithmCubicLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: AlgorithmCubicLagrangian - default constructor.
AlgorithmCumulativeHistogram - Class in gov.nih.mipav.model.algorithms
AlgorithmCumulativeHistogram(ModelHistogram, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Constructor for RGB image.
AlgorithmCumulativeHistogram(ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram: Constructor for grey scale image
AlgorithmCyclicPermutation - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmCyclicPermutation(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation
AlgorithmDConvolver - Class in gov.nih.mipav.model.algorithms: Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver: Sets the source and kernel images and calls the appropriate method based on image dimensionality.
AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
AlgorithmDemonsLite - Class in gov.nih.mipav.model.algorithms.registration: Algorithm for non-linear registration with the DEMONS algorithm
AlgorithmDemonsLite(ModelImage, ModelImage, int, int, float, float, String, String) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmDEMRI3 - Class in gov.nih.mipav.model.algorithms: 3 model parameters are fit for each voxel in 3D: 1) K_trans in [0, 0.99] 2) User choice of k_ep in [0, 0.99] or ve 3) f_vp in [0, 0.99] K_trans and k_ep default to rates per second, but the user changed select rates per minute.
AlgorithmDEMRI3(ModelImage, ModelImage, double[], double[], double, boolean, double, int, double, ModelImage, double, double, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3: Creates a new AlgorithmDEMRI3 object.
AlgorithmDEMRI3.Fit24DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmDEMRI3.Fit25HModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmDEMRI3.FitDEMRI3ConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmDicomOrder - Class in gov.nih.mipav.model.algorithms.utilities: Put 3D dataset into dicom order.
AlgorithmDicomOrder(ModelImage, int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: In place constructor.
AlgorithmDICOMtoAVI - Class in gov.nih.mipav.model.algorithms.utilities: Recursively traverses a directory and its subfolders, converting all 3D DICOM files to AVI with MP42 Compression.
AlgorithmDICOMtoAVI(String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI: Default Constructor.
AlgorithmDistanceFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmDistanceFilter(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
AlgorithmDTI2EGFA - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm requires input of a Diffusion Tensor Image to calculate an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image This algorithm works in conjunction with AlgorithmDTITract to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See: Introduction to Diffusion Tensor Imaging, by Susumu Mori
AlgorithmDTI2EGFA(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Initialize the Algorithm with the input DTI Image:
AlgorithmDTIColorDisplay - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
AlgorithmDTIColorDisplay - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: constructor *
AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: constructor *
AlgorithmDTICreateListFile - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
AlgorithmDTICreateListFile(String, String, String, String, String, JTextArea, boolean, boolean, int, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for dicom if registration is to be done first
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for par/rec
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for dicom
AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: constructor for par/rec if registration is to be done first
AlgorithmDTICreateListFile.InstanceNumberComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: This inner class is used to sort the list by instance number
AlgorithmDTICreateListFile.InstanceNumberVolComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: This inner class is used to sort the list by instance number and vol. the vol is determined by the filename
AlgorithmDTITract - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm requires input of previous calculated FA, EigenVector and EigenValue images from AlgorithmDTI2EGFA to calculate fiber bundle tracts This algorithm works in conjunction with AlgorithmDTI2EGFA to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See:Introduction to Diffusion Tensor Imaging, by Susumu Mori
AlgorithmDTITract(ModelImage, ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean, float, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Initialize the Algorithm with the input DTI Image:
AlgorithmDTITract(ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract: Initialize the Algorithm with the input DTI Image:
AlgorithmDualContourSearch - Class in gov.nih.mipav.model.algorithms
AlgorithmDualContourSearch(ModelImage, int, int, int, int, double, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
AlgorithmDWI2DTI - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging: Algorithm calculates a Diffusion Tensor Image from a series of Diffusion Weighted Images.
AlgorithmDWI2DTI(ModelImage, boolean, int, int, int, int, int, float, String[][], int[], GMatrixd, String) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI: Create a new AlgorithmDWI2DTI
AlgorithmDWI2DTI(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
AlgorithmEdgeDetection3D - Class in gov.nih.mipav.model.algorithms
AlgorithmEdgeDetection3D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: AlgorithmEdgeDetection3D - default constructor.
AlgorithmEdgeDetection3D(ModelImage, ModelImage, double, double, double, int, int, int, double, double, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D: AlgorithmEdgeDetection3D.
AlgorithmEdgeLaplacian - Class in gov.nih.mipav.model.algorithms: Calculates the EdgeLap of an image at a scale defined by the user.
AlgorithmEdgeLaplacian(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Creates a new AlgorithmEdgeLaplacian object.
AlgorithmEdgeLaplacianSep - Class in gov.nih.mipav.model.algorithms: Calculates the EdgeLap of an image at a scale defined by the user.
AlgorithmEdgeLaplacianSep(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Creates a new AlgorithmEdgeLaplacianSep object.
AlgorithmEdgeNMSuppression - Class in gov.nih.mipav.model.algorithms: Calculates the non-maximum suppression of an image at a scale defined by the user.
AlgorithmEdgeNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: Creates a new AlgorithmEdgeNMSuppression object.
AlgorithmEdgePreservingSmoothing - Class in gov.nih.mipav.model.algorithms.filters: These are Maximum Homogeneity Neighbor Filters.
AlgorithmEdgePreservingSmoothing(ModelImage, ModelImage, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing
AlgorithmEfficientWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmEfficientWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
AlgorithmEfficientWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmEfficientWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmEllipseGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned ellipses with a specified semi-major axis, semi-minor axis, and angle phi between the x-axis and the major axis of the ellipse.
AlgorithmEllipseGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: AlgorithmEllipseGeneration - default constructor.
AlgorithmEllipseGeneration(ModelImage, int, int, double, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration: AlgorithmEllipseGeneration.
AlgorithmEllipseToCircle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of an ellipse to a circle.
AlgorithmEllipseToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: AlgorithmEllipseToCircle - default constructor.
AlgorithmEllipseToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle: AlgorithmEllipseToCircle.
AlgorithmEllipseToRectangle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of an ellipse to a rectangle.
AlgorithmEllipseToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: AlgorithmEllipseToRectangle - default constructor.
AlgorithmEllipseToRectangle(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle: AlgorithmEllipseToRectangle.
AlgorithmEllipsoidFit - Class in gov.nih.mipav.model.algorithms: This code fits data points to a 3D ellipsoid.
AlgorithmEllipsoidFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: Creates a new AlgorithmEllipsoidFit object.
AlgorithmEllipticFilter - Class in gov.nih.mipav.model.algorithms.filters: This module contains a port from FORTRAN to Java of the FORTRAN program for designing elliptic-function filters and a port from MATLAB to Java of the MATLAB program ellipap1 for designing an elliptic analog lowpass filter prototype found in "Elliptic Functions for Filter Design" by H.
AlgorithmEllipticFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter: The FORTRAN example in the article of n = 7, apd = 0.1dB, k = 0.8 gives in Table VI: Make FORTRAN zeros poles and FORTRAN poles zeros Poles: -0.0455944342 + j1.026557002 -0.1713670100 + j0.918389608 -0.3689660125 + j0.603979789 -0.4980421689 + j0.0 Zeros: 1.268831784 1.467798747 2.384834232 For the MATLAB example rs = 55.43dB.
AlgorithmEllipticFilter(int, double, double, double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
AlgorithmEllipticFilter(int, double, double, double[], double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
AlgorithmEllipticFourierDescriptors - Class in gov.nih.mipav.model.algorithms: Smoothing VOI with Elliptic Fourier Descriptors.
AlgorithmEllipticFourierDescriptors() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
AlgorithmEllipticFourierDescriptors(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Creates a new AlgorithmEllipticFourierDescriptors object.
AlgorithmELSUNCOpt2D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 2D image.
AlgorithmELSUNCOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt2D.FitOAR2DLMModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms: Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 3D image.
AlgorithmELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D.FitOAR3DLMModel - Class in gov.nih.mipav.model.algorithms
AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmEmbeddedConfidenceEdgeDetection(ModelImage, ModelImage, int, double, double, double, double, double, double, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList - Class in gov.nih.mipav.model.algorithms
AlgorithmEmbeddedConfidenceEdgeDetection.BgImage - Class in gov.nih.mipav.model.algorithms
AlgorithmEntropicEdgeDetection - Class in gov.nih.mipav.model.algorithms
AlgorithmEntropicEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: AlgorithmEntropicEdgeDetection - default constructor.
AlgorithmEntropicEdgeDetection(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection: AlgorithmEntropicEdgeDetection.
AlgorithmEntropyMinimization - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmEntropyMinimization(ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Creates a new AlgorithmEntropyMinimization object.
AlgorithmEntropyMinimization(ModelImage, ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: Creates a new AlgorithmEntropyMinimization object.
AlgorithmEvaluateMaskSegmentation - Class in gov.nih.mipav.model.algorithms: Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
AlgorithmEvaluateMaskSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation: Creates a new AlgorithmEvaluateMaskSegmentation object.
AlgorithmEvaluateSegmentation - Class in gov.nih.mipav.model.algorithms: Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
AlgorithmEvaluateSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation: Creates a new AlgorithmEvaluateSegmentation object.
AlgorithmExtractSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that extracts the slices indicated in the list from the srcImage and puts them into the destImage.
AlgorithmExtractSlices(ModelImage, ModelImage, String[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: Import source and destination images into the class.
AlgorithmExtractSlicesVolumes - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmExtractIndividualSlices
AlgorithmExtractSlicesVolumes(ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes: Import source and destination images into the class.
AlgorithmExtractSurface - Class in gov.nih.mipav.model.algorithms: Extracts a surface using Tetrahedron Extraction.
AlgorithmExtractSurface(ModelImage, float, int, boolean, boolean, float, String, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: Creates a new AlgorithmExtractSurface object.
AlgorithmExtractSurfaceCubes - Class in gov.nih.mipav.model.algorithms: Extracts a surface using Marching Cube Extraction.
AlgorithmExtractSurfaceCubes(ModelImage, int, int, boolean, boolean, float, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: Creates a new AlgorithmExtractSurfaceCubes object.
AlgorithmFaceAnonymizer - Class in gov.nih.mipav.model.algorithms: FaceAnonymizer algorithm computes the "face" from a ModelImage based on input parameters that specify the min/max voxel values for the face voxels, and the maximum skin thinkness.
AlgorithmFaceAnonymizer(ModelImage, int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Create a face Anonymizer.
AlgorithmFaceAnonymizerBET - Class in gov.nih.mipav.model.algorithms: Anonymize an image of a patient's head by removing the face.
AlgorithmFaceAnonymizerBET(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Construct the face anonymizer, but do not run it yet.
AlgorithmFaceAnonymizerBET.BitSetUtility - Class in gov.nih.mipav.model.algorithms: Private utility class for operations on BitSets
AlgorithmFacetModel - Class in gov.nih.mipav.model.algorithms
AlgorithmFacetModel(ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
AlgorithmFacetModel(ModelImage, ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms.levelset: DOCUMENT ME!
AlgorithmFastMarching(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Creates a new ViewJFrameFastMarching3 object.
AlgorithmFastMarching(ModelImage, float[], int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: AnisotropicDiffusion.
AlgorithmFastMarching(ModelImage, int, int, float, float, float, float, float, int, float, float, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching: Creates a new AlgorithmFastMarching3 object.
AlgorithmFFT - Class in gov.nih.mipav.model.algorithms.filters: Processing images by filtering in the frequency domain is a 3 step process: 1.)
AlgorithmFFT(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
AlgorithmFFT(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
AlgorithmFFT2 - Class in gov.nih.mipav.model.algorithms.filters: Processing images by filtering in the frequency domain is a 3 step process: 1.)
AlgorithmFFT2(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
AlgorithmFFT2(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
AlgorithmFIREEdgeExtraction - Class in gov.nih.mipav.model.algorithms.filters: References: 1.)
AlgorithmFIREEdgeExtraction(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Constructor for images in which changes are returned to the source image.
AlgorithmFIREEdgeExtraction(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmFlip - Class in gov.nih.mipav.model.algorithms.utilities: Flips 2D, 3D or 4D grays scale or color dataset about X, Y, or Z axis (when applicable) when AlgorithmFlip.IMAGE is passed to the constructor.
AlgorithmFlip(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Flips 2D, 3D or 4D grays scale or color dataset about X or Y axis.
AlgorithmFlip.ShapeHolder - Class in gov.nih.mipav.model.algorithms.utilities: DOCUMENT ME!
AlgorithmFloodFill - Class in gov.nih.mipav.model.algorithms: Stack based flood-fill for 2D and 3D images.
AlgorithmFloodFill(BitSet, int[], int, Point3D) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Stack based flood-fill for 2D and 3D images.
AlgorithmFloodFill(BitSet, int[], int, Point) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: Stack based flood-fill for 2D and 3D images.
AlgorithmFRAP - Class in gov.nih.mipav.model.algorithms: Fluorescence Recovery after PhotoBleaching Only 1 color will be used from a color image.
AlgorithmFRAP(ModelImage, boolean, boolean, boolean, int, int, int, int, int, boolean, int, boolean, boolean, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP: Creates a new AlgorithmFRAP object.
AlgorithmFRAP.distanceIntensityComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.distanceIntensityItem - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.Fit24DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitExpModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitExpModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2i - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2p - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullIntModel2s - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullModel2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitFullModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitIntensityProfile - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitPure1DModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitPure1DNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSineModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSingleExponentialModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitSingleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNL2solInt2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNL2solModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConInt2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel2 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModel3 - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.FitWholeNLConModelqd - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmFRAP.IntModel - Class in gov.nih.mipav.model.algorithms: class IntModel extends Integration { public IntModel(double lower, double upper, int routine, double eps) { super(lower, upper, routine, eps); } public double intFunc(double x) { double function = 0.0; if ((x !
AlgorithmFRAP.IntModel2 - Class in gov.nih.mipav.model.algorithms: class IntModel2 extends Integration2 { public IntModel2(double lower, double upper, int routine, double breakPoints[], double epsabs, double epsrel, int limit) { super(lower, upper, routine, breakPoints, epsabs, epsrel, limit); } public double intFunc(double x) { double function = 0.0; if ((x !
AlgorithmFRAP.IntModelBessel - Class in gov.nih.mipav.model.algorithms
AlgorithmFRAP.IntModelI0NuclearArea - Class in gov.nih.mipav.model.algorithms
AlgorithmFrequencyFilter - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmFrequencyFilter.java.
AlgorithmFrequencyFilter(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used in Laplacian medialness option of live wire cost function.
AlgorithmFrequencyFilter(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilter(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilter(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used for Gabor transform.
AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilter(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Constructor used for Gabor transform.
AlgorithmFrequencyFilterColor - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmFrequencyFilterColor.java.
AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used in Laplacian medialness option of live wire cost function.
AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilterColor(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilterColor(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used for Gabor transform.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Creates a new AlgorithmFrequencyFilter object.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This constructor is only used for HOMOMORPHIC filters.
AlgorithmFrequencyFilterColor(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Constructor used for Gabor transform.
AlgorithmFRETAcceptorPhotobleach - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETAcceptorPhotobleach(ModelImage, ModelImage, boolean, boolean, boolean, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: Creates a new AlgorithmFRETAcceptorPhotobleach object.
AlgorithmFRETBleedThrough - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETBleedThrough(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough: Creates a new AlgorithmFRETBleedThrough object.
AlgorithmFRETEfficiency - Class in gov.nih.mipav.model.algorithms: Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
AlgorithmFRETEfficiency(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, float, float, float, float, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency: Creates a new AlgorithmFRETEfficiency object.
AlgorithmFuzzMinDeAndChatterji - Class in gov.nih.mipav.model.algorithms.filters: This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
AlgorithmFuzzMinDeAndChatterji(ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Constructor for images in which changes are returned to the source image.
AlgorithmFuzzMinDeAndChatterji(ModelImage, ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmFuzzyCMeans - Class in gov.nih.mipav.model.algorithms: Fuzzy C-Means Segmentation algorithm
AlgorithmFuzzyCMeans(ModelImage[], ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Creates a new AlgorithmFuzzyCMeans object.
AlgorithmFuzzyCMeans(ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Creates a new AlgorithmFuzzyCMeans object.
AlgorithmFuzzyConnectednessSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmFuzzyConnectednessSegmentation(ModelImage[], ModelImage, int, int, double, double, Vector<Integer>, Vector<Short>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
AlgorithmFuzzyMinimization - Class in gov.nih.mipav.model.algorithms.filters: This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
AlgorithmFuzzyMinimization(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Constructor for images in which changes are returned to the source image.
AlgorithmFuzzyMinimization(ModelImage, ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmGaussianBlur - Class in gov.nih.mipav.model.algorithms.filters: The application of this algorithm blurs an image or VOI region of the image with a Gaussian function at a user defined scale (sigma - standard deviation).
AlgorithmGaussianBlur(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Creates a new AlgorithmGaussianBlur object.
AlgorithmGaussianBlur(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Constructor which sets the source and destination images, the minimum and maximum progress value.
AlgorithmGaussianBlurSep - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gaussian blur of an image at a scale defined by the user (using separable convolutions).
AlgorithmGaussianBlurSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Creates a new AlgorithmGaussianBlurSep object.
AlgorithmGaussianMixtureModelEM - Class in gov.nih.mipav.model.algorithms: Copyright (c) 1995 The Board of Trustees of Purdue University.
AlgorithmGaussianMixtureModelEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM(int, int, String, String, String, String, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM(String, String, String, String, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
AlgorithmGaussianMixtureModelEM.ClassData - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.ClassSig - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.SigSet - Class in gov.nih.mipav.model.algorithms
AlgorithmGaussianMixtureModelEM.SubSig - Class in gov.nih.mipav.model.algorithms
AlgorithmGenerateIsolines - Class in gov.nih.mipav.model.algorithms
AlgorithmGenerateIsolines(ModelImage, ModelImage, double, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
AlgorithmGradientInverseWeightedSmoothing - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmGradientInverseWeightedSmoothing(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
AlgorithmGradientInverseWeightedSmoothing(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
AlgorithmGradientMagnitude - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gradient magnitude of an image at a scale defined by the user.
AlgorithmGradientMagnitude(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
AlgorithmGradientMagnitude(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Creates a new AlgorithmGradientMagnitude object.
AlgorithmGradientMagnitudeSep - Class in gov.nih.mipav.model.algorithms.filters: Calculates the gradient magnitude of an image at a scale defined by the user (using separable convolutions).
AlgorithmGradientMagnitudeSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: Creates a new AlgorithmGradientMagnitudeSep object.
AlgorithmGraphBasedSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation(ModelImage, ModelImage, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation: Constructs graph based segmentation algorithm.
AlgorithmGraphBasedSegmentation.edge - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.edgeComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.uni_elt - Class in gov.nih.mipav.model.algorithms
AlgorithmGraphBasedSegmentation.universe - Class in gov.nih.mipav.model.algorithms
AlgorithmGrayScaleMorphology25D - Class in gov.nih.mipav.model.algorithms: 2.5D mathematical morphology class applied to Gray scale images. (2D morphology on 3D volumes).
AlgorithmGrayScaleMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmGrayScaleMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: Creates a new AlgorithmGrayScaleMorphology25D object.
AlgorithmGrayScaleMorphology2D - Class in gov.nih.mipav.model.algorithms: Two-Dimensional mathematical morphology class applied to Gray scale images.
AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmGrayScaleMorphology2D object.
AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmGrayScaleMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Creates a new AlgorithmGrayScaleMorphology2D object.
AlgorithmGrayScaleMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmGrayScaleMorphology3D - Class in gov.nih.mipav.model.algorithms: Three-Dimensional mathematical morphology class applied to Gray scale images.
AlgorithmGrayScaleMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: Creates a new AlgorithmGrayScaleMorphology3D object.
algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
AlgorithmGuidedFilter - Class in gov.nih.mipav.model.algorithms.filters: The MIT License (MIT) Copyright (c) 2014 Atilim Cetin Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
AlgorithmGuidedFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
AlgorithmGuidedFilter(ModelImage, ModelImage, ModelImage, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
AlgorithmGVF - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm derivative using BSplines.
AlgorithmGVF(ModelImage, ModelImage, float[], int, int, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGVF: Creates a new AlgorithmGVF object.
AlgorithmHaralickTexture - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: Creates a new AlgorithmHaralickTexture object for color image.
AlgorithmHarrisCornerDetector - Class in gov.nih.mipav.model.algorithms
AlgorithmHarrisCornerDetector() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: AlgorithmHarrisCornerDetector - default constructor.
AlgorithmHarrisCornerDetector(ModelImage, ModelImage, float, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector: AlgorithmHarrisCornerDetector.
AlgorithmHarrisLaplace - Class in gov.nih.mipav.model.algorithms
AlgorithmHarrisLaplace() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: AlgorithmHarrisLaplace - default constructor.
AlgorithmHarrisLaplace(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace: AlgorithmHarrisLaplace.
AlgorithmHeightFunction - Class in gov.nih.mipav.model.algorithms: The class generates a triangle or quad mesh of a 2D dataset (image) to be displayed in the surface viewer.
AlgorithmHeightFunction(ModelImage, int, String, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Sets up variables needed by algorithm to run.
AlgorithmHepticLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 7 which interpolates a given function f at the points x(-3), x(-2), x(-1), x(0), x(1), x(2), x(3), and x(4) and is given by p(x) = sum from i = -3 to i = 4 of li(x)*f(xi), where li, i = -3,-2,-1,0,1,2,3,4 which are called the fundamental polynomials, are given by li(x) = product from k = -3 to k = 4 for k !
AlgorithmHepticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: AlgorithmHepticLagrangian - default constructor.
AlgorithmHessian - Class in gov.nih.mipav.model.algorithms: Provides functions to convolve an image with the second derivitive of the Gaussian function to obtain the Hessian matrix for a particular point on the image.
AlgorithmHessian(ModelImage, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHessian: Creates a new AlgorithmHessian object.
AlgorithmHilbertTransform - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmHilbertTransform(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform
AlgorithmHillClimbingWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmHillClimbingWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
AlgorithmHillClimbingWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmHillClimbingWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmHistogram - Class in gov.nih.mipav.model.algorithms: Calculates the histogram for an image.
AlgorithmHistogram(ModelHistogram, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelHistogram, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object.
AlgorithmHistogram(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram(ModelImage, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an image.
AlgorithmHistogram(ModelImage, int, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram: Constructs the histogram calculation object for an RGB image.
AlgorithmHistogram.GrayLevelClass - Class in gov.nih.mipav.model.algorithms: Used specifally by the Otsu threshold algorithm to define a gray level object for calculating probabilities.
AlgorithmHistogram2Dim - Class in gov.nih.mipav.model.algorithms: This algorithm creates a two dimensional histogram of the data in 2 black and white images or 1 color image. if doLinearRescale is true, the range of data in the second image is rescaled to be the same as the range of data in the first image.
AlgorithmHistogram2Dim(ModelImage, ModelImage, boolean, boolean, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmHistogram2Dim(ModelImage, ModelImage, ModelImage, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Constructor for images in which 2D histogram is placed in a predetermined destination image.
AlgorithmHistogramMatch - Class in gov.nih.mipav.model.algorithms: Algorithm that matches the transforms a match or source image so as to make its histogram equal to the histogram of a base image.
AlgorithmHistogramMatch(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Constructor for 3D images in which changes are returned to the source image.
AlgorithmHistogramMatch(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmHistogramSliceMatch - Class in gov.nih.mipav.model.algorithms: Algorithm that matches or transforms a match or source slice so as to make its histogram equal to the histogram of a base slice.
AlgorithmHistogramSliceMatch(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Constructor for 3D images in which changes are returned to the source image.
AlgorithmHistogramSliceMatch(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmHMRF_EM - Class in gov.nih.mipav.model.algorithms: This is a port of the MATLAB files HMRF_EM.m and MRF_MAP.m written by Quan Wang to Java
AlgorithmHMRF_EM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: AlgorithmHMRF_EM - default constructor.
AlgorithmHMRF_EM(ModelImage, ModelImage, int, int, float, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM: AlgorithmHMRF_EM.
AlgorithmHoughCardioid - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate theta0, a0 points in the Hough transform.
AlgorithmHoughCardioid() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: AlgorithmHoughCardioid - default constructor.
AlgorithmHoughCardioid(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid: AlgorithmHoughCardioid.
AlgorithmHoughCircle - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate x0, y0, rad points in the Hough transform.
AlgorithmHoughCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: AlgorithmHoughCircle - default constructor.
AlgorithmHoughCircle(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle: AlgorithmHoughCircle.
AlgorithmHoughEllipse - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate p, q, r1, r2, and theta points in the Hough transform.
AlgorithmHoughEllipse() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: AlgorithmHoughEllipse - default constructor.
AlgorithmHoughEllipse(ModelImage, ModelImage, double, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse: AlgorithmHoughEllipse.
AlgorithmHoughHyperbola - Class in gov.nih.mipav.model.algorithms: This work is made possible by the following mathematical theorem proved by Professor Alan Horwitz of Penn State University: Finding the Center of a Hyperbola, H, given three nonparallel tangent lines to H and the corresponding points of tangency.
AlgorithmHoughHyperbola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: AlgorithmHoughHyperbola - default constructor.
AlgorithmHoughHyperbola(ModelImage, ModelImage, int, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola: AlgorithmHoughHyperbola.
AlgorithmHoughLine - Class in gov.nih.mipav.model.algorithms: This Hough transform uses (xi, yi) points in the original image space to generate rho, theta points in the Hough transform.
AlgorithmHoughLine() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: AlgorithmHoughLine - default constructor.
AlgorithmHoughLine(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine: AlgorithmHoughLine.
AlgorithmHoughParabola - Class in gov.nih.mipav.model.algorithms: [(y - vy)*cos(phi) - (x - vx)*sin(phi)]**2 = 4*p*[(y - vy)*sin(phi) + (x - vx)*cos(phi)] where vx, vy are the coordinates of the parabola vertex p is the distance between the vertex and focus of the parabola This Hough transform uses (xi, yi) points in the original image space to generate vx, vy, phi, p points in the Hough transform.
AlgorithmHoughParabola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: AlgorithmHoughParabola - default constructor.
AlgorithmHoughParabola(ModelImage, ModelImage, int, int, int, double, int, float, float, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola: AlgorithmHoughParabola.
AlgorithmHurstIndex - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmHurstIndex(ModelImage, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for black and white image.
AlgorithmHurstIndex(ModelImage, int, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for color image.
AlgorithmHurstIndex(ModelImage, ModelImage, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for black and white image.
AlgorithmHurstIndex(ModelImage, ModelImage, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: Creates a new AlgorithmHurstIndex object for color image.
AlgorithmHurstIndex.DistanceIntensity - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmHurstIndex.DistanceIntensityComparator - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmIAGCWD - Class in gov.nih.mipav.model.algorithms
AlgorithmIAGCWD() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
AlgorithmIAGCWD(ModelImage, ModelImage, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
AlgorithmIHN3Correction - Class in gov.nih.mipav.model.algorithms: N3 Inhomogeneity correction This is based on code by John G.
AlgorithmIHN3Correction(ModelImage, ModelImage, ModelImage, float, int, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Creates a new AlgorithmIHN3Correction object.
AlgorithmImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that adds, subtracts, multiplies, or divides an image by by another image.
AlgorithmImageCalculator(ModelImage, ModelImage[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: constructor used for bulk images
AlgorithmImageCalculator(ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Creates a new AlgorithmImageCalculator object using srcImgA srcImgB.
AlgorithmImageCalculator(ModelImage, ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Creates a new AlgorithmImageCalculator object.
AlgorithmImageHessian - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmImageHessian(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageHessian(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageHessian(ModelImage, ModelImage, int, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian: Creates a new AlgorithmImageHessian object.
AlgorithmImageMath - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that adds, subtracts, multiplies, or divides an image by some user specified value.
AlgorithmImageMath(ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Creates a new AlgorithmImageMath object.
AlgorithmImageMath(ModelImage, ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Creates a new AlgorithmImageMath object.
AlgorithmImageMath.Operator - Enum in gov.nih.mipav.model.algorithms.utilities
AlgorithmIndependentComponents - Class in gov.nih.mipav.model.algorithms: This algorithm operates on 2D and 3D black and white and color images.
AlgorithmIndependentComponents(ModelImage[], ModelImage[], int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Creates a new AlgorithmIndependentComponents object.
AlgorithmIndependentComponents(ModelImage[], ModelImage, int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents: Creates a new AlgorithmIndependentComponents object.
AlgorithmInsertSlice - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to insert a slice.
AlgorithmInsertSlice(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Import source and destination images into the class.
AlgorithmInsertVolume - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmInsertVolume(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Import source and destination images into the class.
AlgorithmInterface - Interface in gov.nih.mipav.model.algorithms: The interface used by all classes which want to respond to the conclusion of an algorithm.
AlgorithmIsophoteCurvature - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmIsophoteCurvature(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
AlgorithmIsophoteCurvature(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
AlgorithmIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmIteratedBlindDeconvolution(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: Creates a new AlgorithmIteratedBlindDeconvolution object.
AlgorithmKernelRegression - Class in gov.nih.mipav.model.algorithms.filters: This is a port of MATLAB routines contained in kernelRegressionBasedImageProcessingToolBox_ver1-2beta written by Hiroyuki Takeda, Sina Farsiu, and Peyman Milanfar.
AlgorithmKernelRegression(ModelImage, ModelImage, int, boolean, boolean, boolean, double, boolean, double, boolean, double, float, float, float, int, int, int, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Creates a new AlgorithmKernelRegression object.
AlgorithmKMeans - Class in gov.nih.mipav.model.algorithms: This program can be run on data of any dimensionality.
AlgorithmKMeans(ModelImage, int, int, double[][], double[], int[], double[], double[][], String, int, float[], float[], float[], double, boolean, boolean, double[], boolean, double[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmKMeans
AlgorithmKMeans.positionWeightComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmKMeans.positionWeightItem - Class in gov.nih.mipav.model.algorithms
AlgorithmLaplacian - Class in gov.nih.mipav.model.algorithms.filters: Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
AlgorithmLaplacian(ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, float[], boolean[], boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLaplacian(ModelImage, ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess - Class in gov.nih.mipav.model.algorithms: Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Constructs a Laplacian algorithm object.
AlgorithmLawsTexture - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLawsTexture(ModelImage[], ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
AlgorithmLearnFromFailure64 - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
AlgorithmLearnFromFailure64.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64Knees - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
AlgorithmLearnFromFailure64Knees.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
AlgorithmLevelSet - Class in gov.nih.mipav.model.algorithms: This algorithm iteratively expands or contracts one or more contours to a boundary.
AlgorithmLevelSet(ModelImage, float[], int, int, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: LevelSet.
AlgorithmLevelSetDiffusion - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmLevelSetDiffusion(ModelImage, float[], int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: AnisotropicDiffusion.
AlgorithmLLE - Class in gov.nih.mipav.model.algorithms
AlgorithmLLE(ModelImage, ModelImage, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLLE: Creates a new AlgorithmLLE object.
AlgorithmLLE.distanceIndexComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmLLE.distanceIndexItem - Class in gov.nih.mipav.model.algorithms
AlgorithmLoadB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImage.AlgorithmLoadB
AlgorithmLocalNormalization - Class in gov.nih.mipav.model.algorithms.filters: Local Normalisation equalises colour levels among pixels by removing variations due to lighting; this brings out contrasts in detail.
AlgorithmLocalNormalization(ModelImage, ModelImage, float[], double, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: This constructor initialises a Local normalisation algorithm for a source and destination image, and ensures that the destination image is ModelStorageBase.FLOAT.
AlgorithmLocalVariance - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmLocalVariance(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmLogSlopeMapping - Class in gov.nih.mipav.model.algorithms
AlgorithmLogSlopeMapping(ModelImage, ModelImage[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping
AlgorithmLowerCompletion - Class in gov.nih.mipav.model.algorithms
AlgorithmLowerCompletion(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
AlgorithmLuminanceAdaptation - Class in gov.nih.mipav.model.algorithms
AlgorithmLuminanceAdaptation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
AlgorithmLuminanceAdaptation(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
AlgorithmMarkovSegment - Class in gov.nih.mipav.model.algorithms
AlgorithmMarkovSegment(ModelImage, ModelImage, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
AlgorithmMarkovSmooth - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmMarkovSmooth(ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
AlgorithmMarkovSmooth(ModelImage, ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
AlgorithmMask - Class in gov.nih.mipav.model.algorithms.utilities: Allow the user to fill a VOI or fill everything outside the VOI with a specific fill value.
AlgorithmMask(ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMask(ModelImage, Color, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Creates a new AlgorithmMask object.
AlgorithmMatchForReference - Class in gov.nih.mipav.model.algorithms: Will take Two 2D images (one Reference, one Adjusted) and use the Reference image's Resolutions to transform the adjusted Image into a new size and resolution that the Reference Image can then be matched to, while preserving all Field of Views (there is no loss of FOV).
AlgorithmMatchForReference(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference: Constructor.. takes in a reference and adjusted modelImage
AlgorithmMatchImages - Class in gov.nih.mipav.model.algorithms.utilities: Matches two ModelImages.
AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Create an AlgorithmMatchImages to match the two input images.
AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Create an AlgorithmMatchImages to match the two input images.
AlgorithmMaximumIntensityProjection - Class in gov.nih.mipav.model.algorithms.utilities: Computes the maximum or the minimum intensity along each projection of a 3D image.
AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Estimates the maximum intensity projection in each direction of a 3D black and white image
AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Estimates the maximum intensity projection of a 3D color image
AlgorithmMaximumLikelihoodIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms: An implementation of Maximum Likelihood Iterated Blind Deconvolution based on the following papers:
AlgorithmMaximumLikelihoodIteratedBlindDeconvolution(ModelImage, int, int, float, float, float, boolean, int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Creates a new AlgorithmMaximumLikelihoodIteratedBlindDeconvolution object.
AlgorithmMean - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply a mean filter to an image, placing it in a new ModelImage if New image is selected or returning the changed picture to the same image if Replace image is selected.
AlgorithmMean(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMean(ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMean(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMean(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMeanShiftClustering - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmMeanShiftClustering(ModelImage, int, int, int, String, String, int, int, double, boolean, float, boolean, float, int, int, boolean, int, int, float[], ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: File formats: Files are all ASCII files.
AlgorithmMeanShiftClustering.fams_cut - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_hash_entry - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_hash_entry2 - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.fams_res_cont - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftClustering.famsPoint - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation - Class in gov.nih.mipav.model.algorithms: The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
AlgorithmMeanShiftSegmentation(ModelImage, ModelImage, AlgorithmMeanShiftSegmentation.kernelType, AlgorithmMeanShiftSegmentation.kernelType, float, float, int, AlgorithmMeanShiftSegmentation.SpeedUpLevel, boolean, double, double[], boolean, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
AlgorithmMeanShiftSegmentation.ClassStateStruct - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.kernelType - Enum in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.RAList - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.REGION - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.RegionList - Class in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.SpeedUpLevel - Enum in gov.nih.mipav.model.algorithms
AlgorithmMeanShiftSegmentation.userWeightFunct - Class in gov.nih.mipav.model.algorithms
AlgorithmMedian - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply a median filter to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMidsagittal - Class in gov.nih.mipav.model.algorithms: Finds the midsagittal line of a brain MRI by: Flipping the image horizontally. Registering the flipped image against the original. Getting the angle that the registration rotated the image. Transforming the original image by half the registration rotation.
AlgorithmMidsagittal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Construct the midsagittal algorithm.
AlgorithmMinimumPerimeterPolygon - Class in gov.nih.mipav.model.algorithms: Smoothing VOI with minimum perimeter polygon.
AlgorithmMinimumPerimeterPolygon() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
AlgorithmMinimumPerimeterPolygon(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Creates a new AlgorithmMinimumPerimeterPolygon object.
AlgorithmMixGaussEM - Class in gov.nih.mipav.model.algorithms
AlgorithmMixGaussEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
AlgorithmMixGaussEM.model - Class in gov.nih.mipav.model.algorithms
AlgorithmMode - Class in gov.nih.mipav.model.algorithms.filters: AlgorithmMode applies one of the user specified kernels to a 2D or 3D BYTE, SHORT, INTEGER, UBYTE, USHORT, UINTEGER.
AlgorithmMode(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 2D images in which changes are returned to the source image.
AlgorithmMode(ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 3D images in which changes are returned to the source image.
AlgorithmMode(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 2D images in which changes are placed in a predetermined destination image.
AlgorithmMode(ModelImage, ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Constructor for 3D images in which changes are placed in a predetermined destination image.
AlgorithmMorphologicalFilter - Class in gov.nih.mipav.model.algorithms.filters: Performs morphological filtering on black and white images.
AlgorithmMorphologicalFilter(ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Constructs a Morphological filter object.
AlgorithmMorphologicalFilter(ModelImage, ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Constructs a Morphological filter object.
AlgorithmMorphology25D - Class in gov.nih.mipav.model.algorithms: 2.5D mathmatical morphology class (2D morphology on 3D volumes).
AlgorithmMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Creates a new AlgorithmMorphology25D object.
AlgorithmMorphology2D - Class in gov.nih.mipav.model.algorithms: Two-Dimensional mathmatical morphology class.
AlgorithmMorphology2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
AlgorithmMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Creates a new AlgorithmMorphology2D object.
AlgorithmMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmMorphology3D - Class in gov.nih.mipav.model.algorithms: Three-Dimensional mathmatical morphology class.
AlgorithmMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Creates a new AlgorithmMorphology3D object.
AlgorithmMorphology3D.intObject - Class in gov.nih.mipav.model.algorithms: Simple class to temporarily store the object's size, ID and seed index value.
AlgorithmMosaicToSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm requires input of 2D or 3D mosaics.
AlgorithmMosaicToSlices(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices: Creates a new AlgorithmMosaicToSlices object.
AlgorithmMRIShadingCorrection - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmMRIShadingCorrection(ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Creates a new AlgorithmMRIShadingCorrection object.
AlgorithmMRIShadingCorrection(ModelImage, ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection: Creates a new AlgorithmMRIShadingCorrection object.
AlgorithmMSER - Class in gov.nih.mipav.model.algorithms
AlgorithmMSER(ModelImage, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER
AlgorithmMSER.VlMserExtrReg - Class in gov.nih.mipav.model.algorithms: Extremal regions (ER) are extracted from the region forest.
AlgorithmMSER.VlMserFilt - Class in gov.nih.mipav.model.algorithms
AlgorithmMSER.VlMserReg - Class in gov.nih.mipav.model.algorithms: Extremal regions and maximally stable extremal regions are instances of image regions.
AlgorithmMSER.VlMserStats - Class in gov.nih.mipav.model.algorithms
AlgorithmMSpectralFuzzyCMeans - Class in gov.nih.mipav.model.algorithms: Fuzzy C-Means Segmentation algorithm
AlgorithmMSpectralFuzzyCMeans(ModelImage[], ModelImage[], int, int, int, int, float, float, float, boolean, int, boolean, int, float, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: AlgorithmMSpectralFuzzyCMeans - Constructor.
AlgorithmMultiExponentialFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmMultiExponentialFitting() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
AlgorithmMultiExponentialFitting(int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int, double[], int, double[], double[], int[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
AlgorithmN4MRIBiasFieldCorrectionFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmN4MRIBiasFieldCorrectionFilter(ModelImage, ModelImage, ModelImage, int, double, double, double, int, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter: Constructor which sets the source and destination images
AlgorithmNearlyCircleToCircle - Class in gov.nih.mipav.model.algorithms: This program performs the conformal mapping of a nearly circular region to a circle.
AlgorithmNearlyCircleToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: AlgorithmNearlyCircleToCircle - default constructor.
AlgorithmNearlyCircleToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle: AlgorithmNearlyCircleToCircle.
AlgorithmNetworkSnake - Class in gov.nih.mipav.model.algorithms: Copyright (c) 2011, The University of Nottingham All rights reserved.
AlgorithmNetworkSnake(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake
AlgorithmNetworkSnake.AnchorPosition - Enum in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ContractingSnake - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ContractingSnakeNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.ExtentionMath - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.IMetadataProvider - Interface in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.Metadata - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.NetworkSnake - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.Pixel - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.PixelGrid - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.PixelGrid.PixelGridNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeInitialiser.Node - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.SnakeNode - Class in gov.nih.mipav.model.algorithms
AlgorithmNetworkSnake.tuple2i - Class in gov.nih.mipav.model.algorithms
AlgorithmNLNoiseReduction - Class in gov.nih.mipav.model.algorithms.filters: This is a port of the SUSAN Nonlinear Noise reduction program.
AlgorithmNLNoiseReduction(ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: AlgorithmNLNoiseReduction - Constructor.
AlgorithmNLNoiseReduction(ModelImage, ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: AlgorithmNLNoiseReduction - Constructor.
AlgorithmNMSuppression - Class in gov.nih.mipav.model.algorithms.filters: Calculates the non-maximum suppression of an image at a scale defined by the user Edges are defined as the union of points for which the gradient magnitude assumes a maximum in the gradient direction.
AlgorithmNMSuppression(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: AlgorithmNMSuppression - Constructor.
AlgorithmNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: AlgorithmNMSuppression - Constructor.
AlgorithmNoise - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm used to add Gaussian, Poisson, Uniform, Rayleigh, or Rician noise to an image.
AlgorithmNoise(ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Creates a new AlgorithmNoise object.
AlgorithmNoise(ModelImage, ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: Creates a new AlgorithmNoise object.
AlgorithmNonlocalMeansFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of the 09/03/2006 NLmeansfilter.m and UNLmeansfilter2.m on 02/15/2008 by Jose Vicente Manjon Herrera & Antoni Buades.
AlgorithmNonlocalMeansFilter(ModelImage, ModelImage, int, int, boolean, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter: Creates a new AlgorithmNonlocalMeans object.
AlgorithmNonMaxSuppts - Class in gov.nih.mipav.model.algorithms
AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
AlgorithmNonparametricSegmentation - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmNonparametricSegmentation(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Creates a new AlgorithmNonparametricSegmentation object.
AlgorithmNonparametricSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation: Creates a new AlgorithmNonparametricSegmentation object.
AlgorithmObjectExtractor - Class in gov.nih.mipav.model.algorithms: A class for segmenting objects.
AlgorithmObjectExtractor(ModelImage, VOI, boolean, boolean, TriMesh, float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Create an extractor for segmenting an object from an image.
AlgorithmObjectExtractor.Edge - Class in gov.nih.mipav.model.algorithms: A representation of an edge for the vertex-edge-triangle table.
AlgorithmObjectExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms: An unordered set of 'int' stored in an array.
AlgorithmOptimizeFunctionBase - Interface in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmParameters - Class in gov.nih.mipav.view.dialogs: This class standardizes the parameter names given to many common parameters used in algorithms.
AlgorithmParameters() - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters: Creates a new AlgorithmParameters object to be used to record the current parameters entered into the algorithm's GUI by the user.
AlgorithmParameters(ParameterTable) - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters: Creates a new AlgorithmParameters object to be used to set up the algorithm's GUI from stored parameters.
AlgorithmPbBoundaryDetection - Class in gov.nih.mipav.model.algorithms: Compute probability of boundary using brightness gradient and texture gradient Original MATLAB code written by David R.
AlgorithmPbBoundaryDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: AlgorithmPbBoundaryDetection - default constructor.
AlgorithmPbBoundaryDetection(ModelImage, ModelImage, int, int, double, double, int, String, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: AlgorithmPbBoundaryDetection.
algorithmPerformed() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
algorithmPerformed(AlgorithmBase) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmInterface: Called after an algorithm this listener is registered to exits (maybe successfully, maybe not).
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: alg performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.MotionDetection
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Respond to the completion or failure of the algorithm we called.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake: algorithmPerformed this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogClose: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: This method is required if the AlgorithmInterface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: method that is called after algorithm is finished.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for catching end of algorithm events.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Algorithm notifies dialog of status.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogErode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: When the morphology algorithm finish running, this method is invoked.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT: Deprecated.

This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Called when the AlgorithmMaximumLikelihoodIteratedBlindDeconvolution has finished processing the source image.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: If the destination image is not null, put in frame.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for catching end of algorithm events.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: alg performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: the standard thread-done event for AlgorithmBase.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: algorithmPerformed - when the alignment algorithm finishes, the transformed tile is blended with the reference image and displayed:
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: algorithm performed
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Called when AlgorithmDWI2DTI is done creating the DTI image.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: empty function to implement the algorithm interface.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: This method is required if the AlgorithmPerformed interface is implemented.
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList: This method is required if the AlgorithmPerformed interface is implemented.
AlgorithmPhaseCongruency - Class in gov.nih.mipav.model.algorithms: Ported from Peter Kovesi's MATLAB code for Phase Congruency Available from: http://www.csse.uwa.edu.au/~pk/research/matlabfns/PhaseCongruency/phasecong3.m and: http://www.csse.uwa.edu.au/~pk/research/matlabfns/FrequencyFilt/lowpassfilter.m in reference to the method lowpassFilter(); % References: % % Peter Kovesi, "Image Features From Phase Congruency".
AlgorithmPhaseCongruency(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
AlgorithmPointArea - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmPointArea(ModelImage, int, int, int, int, boolean, boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPointArea: Creates a new AlgorithmPointArea object.
AlgorithmPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
AlgorithmPowellOpt2D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 2D image.
AlgorithmPowellOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmPowellOpt3D - Class in gov.nih.mipav.model.algorithms: Runs Powell's method for a 3D image.
AlgorithmPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
AlgorithmPowellOptBase - Class in gov.nih.mipav.model.algorithms: Powell's Method
AlgorithmPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase: Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
AlgorithmPowerWatershed - Class in gov.nih.mipav.model.algorithms: This is a port of C code written by Camille Couprie in 2009.
AlgorithmPowerWatershed(ModelImage, ModelImage, int, Vector<Integer>, Vector<Short>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed: Constructs Power watershed algorithm.
AlgorithmPowerWatershed.Lifo - Class in gov.nih.mipav.model.algorithms
AlgorithmPowerWatershed.Rbt - Class in gov.nih.mipav.model.algorithms
AlgorithmPowerWatershed.RbtElt - Class in gov.nih.mipav.model.algorithms
AlgorithmPrincipalComponents - Class in gov.nih.mipav.model.algorithms: This algorithm operates on 3D black and white images and on 2D and 3D color images.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmPrincipalComponents(ModelImage[], ModelImage, ModelImage, boolean, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents: Creates a new AlgorithmPrincipalComponents object.
AlgorithmProstateBoundaryExt - Class in gov.nih.mipav.model.algorithms.filters: This algorithm traces the prostate boundary from the target image, non prostate binary mask image and prostate boundary binary mask image.
AlgorithmProstateBoundaryExt(ModelImage, ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: Constructor
AlgorithmProstateBoundaryExt.Edge - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmProstateBoundaryExt.PointAttribute - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmProstateBoundaryFeature2D - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateBoundaryFeature2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeatures - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: Creates a new AlgorithmHaralickTexture object for color image.
AlgorithmProstateFeatures2D - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmProstateFeatures2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: Creates a new AlgorithmHaralickTexture object for black and white image.
AlgorithmProstateFeaturesSaveAutoTrain - Class in gov.nih.mipav.model.algorithms.filters: This class save the Coherence Enhanced Diffusion (CED) 2D slice based features, which are Hurst index and Haralick features.
AlgorithmProstateFeaturesSaveAutoTrain(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Constructor.
AlgorithmQuadraticFit - Class in gov.nih.mipav.model.algorithms: Approximate a set of points by a quadric surface.
AlgorithmQuadraticFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit: Fit a set of 3D points with a quadric surface.
AlgorithmQuantify - Class in gov.nih.mipav.model.algorithms: Quantify image data based on a mask image.
AlgorithmQuantify(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuantify: Creates a new AlgorithmQuantify object.
AlgorithmQuantifyMask - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that does basic calculations on Mask images (boolean/ubyte/short) calculates Center of Mass, area (in resolutions), and number of pixels per mask
AlgorithmQuantifyMask(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask: Creates a new AlgorithmMask object.
AlgorithmQuinticLagrangian - Class in gov.nih.mipav.model.algorithms: This is a polynomial p of degree 5 which interpolates a given function f at the points x(-2), x(-1), x(0), x(1), x(2), and x(3) and is given by p(x) = sum from i = -2 to i = 3 of li(x)*f(xi), where li, i = -2,-1,0,1,2,3 which are called the fundamental polynomials, are given by li(x) = product from k = -2 to k = 3 for k !
AlgorithmQuinticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: AlgorithmQuinticLagrangian - default constructor.
AlgorithmRandSliceOrder - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm that randomizes the order of 3D dataset.
AlgorithmRandSliceOrder(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Constructs an algorithm object that randomizes the order of 3D image dataset.
AlgorithmRandSliceOrder(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Constructs an algorithm object that randomizes the order of 3D image dataset.
AlgorithmRegBSpline - Class in gov.nih.mipav.model.algorithms.registration: This is a common base class which provides common methods and data members for all BSpline based registration.
AlgorithmRegBSpline(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline: Constructor.
AlgorithmRegBSpline.Options - Class in gov.nih.mipav.model.algorithms.registration: Data structure which contains the parameters or options used to perform a BSpline based registration of two images.
AlgorithmRegBSpline25D - Class in gov.nih.mipav.model.algorithms.registration: BSpline based registration of 2.5D images.
AlgorithmRegBSpline25D(ModelImage, ModelImage, int, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D: Constructor.
AlgorithmRegBSpline2D - Class in gov.nih.mipav.model.algorithms.registration: BSpline based registration of 2D images.
AlgorithmRegBSpline2D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D: Constructor.
AlgorithmRegBSpline3D - Class in gov.nih.mipav.model.algorithms.registration: BSpline registration of 3D images.
AlgorithmRegBSpline3D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D: Constructor.
AlgorithmRegChamfer - Class in gov.nih.mipav.model.algorithms.registration: AlgorithmRegChamfer First slice is template (base image) to which match image is registered.
AlgorithmRegChamfer(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Constructs a new registration algorithm.
AlgorithmRegChamfer(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: Constructs new registration algorithm.
AlgorithmRegChamfer.CostFunction - Class in gov.nih.mipav.model.algorithms.registration: Class for specifying optimization function for AlgorithmSimplexOpt.
AlgorithmRegELSUNCOAR25D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR25D(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR25D(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmRegELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegionGrow - Class in gov.nih.mipav.model.algorithms: Fills a region based on average intensity +or- standard deviation.
AlgorithmRegionGrow(ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Creates a new AlgorithmRegionGrow object.
AlgorithmRegionGrow(ModelImage, ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: Creates a new AlgorithmRegionGrow object.
AlgorithmRegionMergingViaBoundaryMelting - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionMergingViaBoundaryMelting(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting: Creates a new AlgorithmRegionMergingViaBoundaryMelting object.
AlgorithmRegionMergingViaBoundaryMelting.mergeItem - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionsFromPartialBorders - Class in gov.nih.mipav.model.algorithms
AlgorithmRegionsFromPartialBorders(ModelImage, ModelImage, double, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders: Creates a new AlgorithmRegionsFromPartialBorders object.
AlgorithmRegLeastSquares - Class in gov.nih.mipav.model.algorithms.registration: "Least-Squares Fitting of 2 3-D Point Sets", K.
AlgorithmRegLeastSquares(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: AlgorithmRegLeastSquares - Constructor.
AlgorithmRegLeastSquares(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: AlgorithmRegLeastSquares - Constructor.
AlgorithmRegOAR25D2 - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR25D2(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR25D2(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR2D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR35D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Creates new automatic internal registration algorithm and sets necessary variables.
AlgorithmRegOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration: Helper class to make it easy to store the necessary information about a minimum.
AlgorithmRegOAR3D - Class in gov.nih.mipav.model.algorithms.registration: This is an automatic registration method based on FLIRT.
AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Creates new automatic linear registration algorithm and sets necessary variables.
AlgorithmRegPatientPos - Class in gov.nih.mipav.model.algorithms.registration: Use origin and image orientations to align images based on patient position.
AlgorithmRegPatientPos(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: Creates new algorithm.
AlgorithmRegularizedIsotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters: Algorithm to apply Regularized Isotropic Nonlinear Diffusion as described by:
AlgorithmRegularizedIsotropicDiffusion(ModelImage, ModelImage, int, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Creates a new AlgorithmRegularizedIsotropicDiffusion object.
AlgorithmRegValidation - Class in gov.nih.mipav.model.algorithms.registration: Uses a selected RegistrationMeasure and the user-specified points to output the relevant measure back to the user.
AlgorithmRegValidation(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: AlgorithmRegValidation - Constructor.
AlgorithmRegValidation(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: AlgorithmRegValidation - Constructor.
AlgorithmRegVOILandmark - Class in gov.nih.mipav.model.algorithms.registration: AlgorithmRegVOILandmark First slice is template (base image) to which subsequent slices are registered.
AlgorithmRegVOILandmark(ModelImage, ModelImage, float[], boolean, VOIBase, double, double, double, double, double, double, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: Constructor.
AlgorithmRegVOILandmark.CostFunction - Class in gov.nih.mipav.model.algorithms.registration: CostFunction - class for specifying optimization function for AlgorithmSimplexOpt slice - current fluoroscopy slice being operated on.
AlgorithmRemoveSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm verifies the z-th slice should be in included in the destination image, as defined in the list, remove.
AlgorithmRemoveSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Import source and destination images into the class.
AlgorithmRemoveTSlices - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to run the remove T slices.
AlgorithmRemoveTSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices: import source and destination images into the class.
AlgorithmReplaceBlankSlicesWithAverages - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmReplaceBlankSlicesWithAverages(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceBlankSlicesWithAverages: Creates a new AlgorithmReplaceSlice object.
AlgorithmReplaceRemovedSlices - Class in gov.nih.mipav.model.algorithms.utilities: This algorithm is used to insert averaged slices where slices have been removed -If slices were removed at the beginning of the original movie, these slices will not be replaced. - Slices are only inserted between the first and last kept slices
AlgorithmReplaceRemovedSlices(ModelImage, boolean[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices: Constructor for algorithm.
AlgorithmReplaceSlice - Class in gov.nih.mipav.model.algorithms.utilities: DOCUMENT ME!
AlgorithmReplaceSlice(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice: Creates a new AlgorithmReplaceSlice object.
AlgorithmReplaceValue - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmReplaceValue
AlgorithmReplaceValue(ModelImage, ModelImage, Vector<JDialogReplaceValue.Values>, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Default contructor.
AlgorithmReslice - Class in gov.nih.mipav.model.algorithms.utilities: Reslices 3D image into (isotropic)cubic voxels.
AlgorithmReslice(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Creates new algorithm for reslicing to isotropic voxels.
AlgorithmRGBConcat - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that generates an RGB image from three gray images.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Creates a new AlgorithmRGBConcat object.
AlgorithmRGBtoGray - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a single greyscale image.
AlgorithmRGBtoGray(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGray(ModelImage, ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Creates a new AlgorithmRGBtoGray object.
AlgorithmRGBtoGrays - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a red, green, and blue greyscale images.
AlgorithmRGBtoGrays(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Creates a new AlgorithmRGBtoGrays object.
AlgorithmRGBtoHSB - Class in gov.nih.mipav.model.algorithms.utilities: Simple algorithm that converts an RGB image to a hue, saturation and brightness greyscale images.
AlgorithmRGBtoHSB(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Creates a new AlgorithmRGBtoHSB object.
AlgorithmRiceWaveletTools - Class in gov.nih.mipav.model.algorithms.filters: This "rice-wlet-tools", version 2.4 Released - CONDITIONS FOR USE: Copyright (c) 2000 RICE UNIVERSITY.
AlgorithmRiceWaveletTools() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, double[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools(ModelImage, ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
AlgorithmRiceWaveletTools.EigenvalueComplex - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmRiceWaveletTools.EigenvalueComplexComparator - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmRotate - Class in gov.nih.mipav.model.algorithms.utilities: An Algorithm to rotate 3D or 4D dataset 90 or 180 degrees about X, Y, or Z axis. 2D Images can also be rotated.
AlgorithmRotate(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRotate(ModelImage, int[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRotate(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Creates new algorithm for rotating.
AlgorithmRuleBasedContrastEnhancement - Class in gov.nih.mipav.model.algorithms.filters: This algorithm uses an equation with 3 membership functions, udark, ugray, and ubright, to transform a gray level g to a new gray level g' for histogram enhancement.
AlgorithmRuleBasedContrastEnhancement(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Constructor for images in which changes are returned to the source image.
AlgorithmRuleBasedContrastEnhancement(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Constructor for images in which changes are placed in a predetermined destination image.
AlgorithmScaleSaliency - Class in gov.nih.mipav.model.algorithms: Original source code in C and MATLAB is Copyright 1998-2004 by Timor Kadir Version 1.5 Kadir/Brady Feature detector (Scale Saliency) Code For non-commercial use only Ported by to Java by William Gandler References: 1.)
AlgorithmScaleSaliency() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency: AlgorithmScaleSaliency - default constructor.
AlgorithmScaleSaliency(ModelImage, int, int, int, int, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
AlgorithmScaleSaliency.sixItems - Class in gov.nih.mipav.model.algorithms
AlgorithmScaleSaliency.sixItemsComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSCDSegmentation - Class in gov.nih.mipav.model.algorithms
AlgorithmSCDSegmentation(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation
AlgorithmSeparableConvolver - Class in gov.nih.mipav.model.algorithms: Convolves an image with a separable (symmetric) kernel and returns the result.
AlgorithmSeparableConvolver(float[], int[], float[][], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Sets destination, source, and kernel buffers.
AlgorithmSeparableConvolver(float[], int[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
AlgorithmSequentialScanningWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmSequentialScanningWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
AlgorithmSequentialScanningWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSequentialScanningWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmSFTA - Class in gov.nih.mipav.model.algorithms
AlgorithmSFTA(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSFTA
AlgorithmShortestPathWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmShortestPathWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
AlgorithmShortestPathWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmShortestPathWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmSimulatedExposureFusion - Class in gov.nih.mipav.model.algorithms
AlgorithmSimulatedExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
AlgorithmSimulatedExposureFusion(ModelImage, ModelImage, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
AlgorithmSingleMRIImageSNR - Class in gov.nih.mipav.model.algorithms: This program uses a mandatory signal 1 VOI, an optional signal 2 VOI, a mandatory noise background VOI, and the number of NMR receivers to calculate the signal to noise ratio for the signal VOI(s).
AlgorithmSingleMRIImageSNR(ModelImage, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: Creates a new AlgorithmSingleMRIImageSNR object.
AlgorithmSkullRemoval - Class in gov.nih.mipav.model.algorithms: Algorithm Implementation 1.
AlgorithmSkullRemoval(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Automatic DeSkulling initialization.
AlgorithmSkullRemoval(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: Automatic DeSkulling initialization.
AlgorithmSliceAveraging - Class in gov.nih.mipav.model.algorithms.filters: This algorithm averages together slices of a 3D image.
AlgorithmSliceAveraging(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Creates a new AlgorithmSliceAveraging object.
AlgorithmSliceAveraging(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: Creates a new AlgorithmSliceAveraging object.
AlgorithmSM2 - Class in gov.nih.mipav.model.algorithms: Based on the document provided by Daniel Reich: Notes on DCE with SM2 (standard model, aka Tofts model, 2-compartment) 3 model parameters are fit for each voxel in 3D: 1) K_trans in [1.0E-5, 5.0] in /min On input ktrans is converted from /min to /sec and on output ktrans is converted from /sec to /min. 2) ve in [1.0E-5, 0.99] 3) f_vp in [0, 0.99] srcImage is a dynamic "4D volume" of MRI signal (3D over time).
AlgorithmSM2(ModelImage[], ModelImage, double[], double[], double[], ModelImage, double[], double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2: Creates a new AlgorithmDEMRI3 object.
AlgorithmSM2.FitAll - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitAllEP - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitAllNL2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2ConstrainedModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2ConstrainedModelC - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.FitSM2nl2solModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.Integration2All - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.Integration2EPAll - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.IntModel - Class in gov.nih.mipav.model.algorithms
AlgorithmSM2.sm2Task - Class in gov.nih.mipav.model.algorithms
AlgorithmSnake - Class in gov.nih.mipav.model.algorithms: Snake-like algorithm deriviative.
AlgorithmSnake(ModelImage, float[], int, float, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSnake: Set up the snake algorithm so that it can be run.
AlgorithmSobel - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmSobel(ModelImage, ModelImage, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
AlgorithmSpectralClustering - Class in gov.nih.mipav.model.algorithms
AlgorithmSpectralClustering(ModelImage, double[][], double[], int[], double[][], String, float[], float[], float[], double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
AlgorithmSphereGeneration - Class in gov.nih.mipav.model.algorithms: This module draws uniformly randomly positioned spheres with a specified radius.
AlgorithmSphereGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: AlgorithmSphereGeneration - default constructor.
AlgorithmSphereGeneration(ModelImage, int, int, int, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration: AlgorithmRandomSphereGeneration.
AlgorithmSphereGeneration.IntModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMeanSquared - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntModelMeanSquared2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquatoModelMean - Class in gov.nih.mipav.model.algorithms
AlgorithmSphereGeneration.IntTorquatoModelMean2 - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed(ModelImage, ModelImage, int, boolean, int, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
AlgorithmSplitAndMergeWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmSplitAndMergeWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmStandardDeviationThreshold - Class in gov.nih.mipav.model.algorithms: The Standard Deviation Threshold works by first having an active VOI in which the standard deviation and other statistics are calculated.
AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: constructor for grey scale image
AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: constructor for color image
AlgorithmSubsample - Class in gov.nih.mipav.model.algorithms.utilities: Takes in an image and subsamples it to a new set of dimensions.
AlgorithmSubsample(ModelImage, ModelImage, int[], int[], float[], boolean, boolean, TransMatrix, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample: Setup for a later subsampling of an image.
AlgorithmSubset - Class in gov.nih.mipav.model.algorithms.utilities: Algorithm to create a 3D subset image from a 4D image.
AlgorithmSubset(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset: import source and destination images into the class.
AlgorithmSubtractVOI - Class in gov.nih.mipav.model.algorithms: Algorithm that subtracts the mean or median value of a VOI from the image.
AlgorithmSubtractVOI(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Creates a new AlgorithmSubtractVOI object.
AlgorithmSubtractVOI(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Creates a new AlgorithmSubtractVOI object.
AlgorithmSwap34 - Class in gov.nih.mipav.model.algorithms.utilities: Swaps third and fourth dimensions in 4D dataset.
AlgorithmSwap34(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34: Constructs new algorithm and sets source.
AlgorithmSwapDims - Class in gov.nih.mipav.model.algorithms.utilities: Swaps dimensions in 4D dataset.
AlgorithmSwapDims(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims: Constructs new algorithm and sets source.
AlgorithmSwapSlicesVolume - Class in gov.nih.mipav.model.algorithms.utilities: Title: AlgorithmSwapSlicesVolume
AlgorithmSwapSlicesVolume(ModelImage, JDialogSwapSlicesVolumes.SwapMode, int[][], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume: Import source and destination images into the class.
AlgorithmSWI - Class in gov.nih.mipav.model.algorithms.filters: This class recalculates mo and dceFullTre to provide better estimates using the inverse Ernst equation
AlgorithmSWI(boolean, ModelImage, ModelImage, ModelImage, double, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Constructor.
AlgorithmSymmetricNearestNeighbor - Class in gov.nih.mipav.model.algorithms.filters
AlgorithmSymmetricNearestNeighbor(ModelImage, ModelImage, boolean, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
AlgorithmTalairachTransform - Class in gov.nih.mipav.model.algorithms: Performs original to ACPC, original to Talairach, ACPC to original, ACPC to Talairach, Talairach to original, or Talairach to ACPC transformation.
AlgorithmTalairachTransform(ModelImage, ModelImage, TalairachTransformInfo, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Creates a new AlgorithmTalairachTransform object.
AlgorithmTamuraTexture - Class in gov.nih.mipav.model.algorithms.filters: DOCUMENT ME!
AlgorithmTamuraTexture(ModelImage[], ModelImage, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Creates a new AlgorithmTamuraTexture object for black and white image.
AlgorithmTamuraTexture(ModelImage[], ModelImage, int, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture: Creates a new AlgorithmTamuraTexture object for color image.
AlgorithmTextureAnalysis - Class in gov.nih.mipav.model.algorithms: Overview This code contains the texture analysis functions for the paper `Texture Analysis and Segmentation Using Modulation Features, Generative Models, and Weighted Curve Evolution', by I.
AlgorithmTextureAnalysis(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
AlgorithmTextureSegmentation - Class in gov.nih.mipav.model.algorithms: This software implements the factorization-based segmentation algorithm.
AlgorithmTextureSegmentation(ModelImage, ModelImage, int, int, Vector3f[], BitSet, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
AlgorithmThinning2D - Class in gov.nih.mipav.model.algorithms
AlgorithmThinning2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D: AlgorithmThinning2D - default constructor.
AlgorithmThinning2D(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D
AlgorithmThresholdDual - Class in gov.nih.mipav.model.algorithms: This algorithm has two modes of operation:
AlgorithmThresholdDual(ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Creates a new AlgorithmThresholdDual object.
AlgorithmThresholdDual(ModelImage, ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Creates a new AlgorithmThresholdDual object.
AlgorithmThresholdDualRGB - Class in gov.nih.mipav.model.algorithms: Runs threshold (lower and upper) on color images and replaces values either outside (inverse) or inside (normal) with the fill values specified.
AlgorithmThresholdDualRGB(ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Default constructor for running algorithm on and modifying source image.
AlgorithmThresholdDualRGB(ModelImage, ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Default constructor for running algorithm into a destination image.
AlgorithmTiltCorrection - Class in gov.nih.mipav.model.algorithms.utilities
AlgorithmTiltCorrection(ModelImage, ModelImage, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
AlgorithmTimeFitting - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Creates a new AlgorithmTimeFitting object.
AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[], boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting: Creates a new AlgorithmTimeFitting object.
AlgorithmTimeFitting.FitExponential - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitGaussian - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLaplace - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLine - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitLorentz - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitMultiExponential - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.FitRayleigh - Class in gov.nih.mipav.model.algorithms
AlgorithmTimeFitting.fittingTask - Class in gov.nih.mipav.model.algorithms
AlgorithmTProcess - Class in gov.nih.mipav.model.algorithms: This abstract class defines terms common to both T1 and T2 processing, such as thresholding and multithreading management methods.
AlgorithmTProcess() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
AlgorithmTProcess(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
AlgorithmTProcess.CalculateT - Class in gov.nih.mipav.model.algorithms
AlgorithmTPSpline - Class in gov.nih.mipav.model.algorithms: Thin plate spline Warning: If the supplied (x,y) data set in setupTPSpline2D is nearly collinear, singular matrices will result and a matrix inversion will fail.
AlgorithmTPSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - default constructor.
AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 3D case.
AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 3D case.
AlgorithmTPSpline(double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: AlgorithmTPSpline - constructor for 2D case.
AlgorithmTPSpline(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: Constructor used when N, xDimA, yDimA, zDimA, x[], y[], z[], and C[][] are read from a file
AlgorithmTranscode - Class in gov.nih.mipav.model.algorithms: Title:
AlgorithmTranscode(URL, String, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTranscode: Creates a new AlgorithmTranscode object.
AlgorithmTransform - Class in gov.nih.mipav.model.algorithms: Transforms Volume by resampling using transformation matrix and the choice of nearest-neighbor, trilinear interpolation, 3rd order Bspline, 4th order Bspline, cubic Lagrangian, quintic Lagrangian, heptic Lagrangian, or windowed sinc.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: 3D constructor for transformation algorithm.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new $class.name$ object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new $class.name$ object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: 2D constructor for transformation algorithm.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new AlgorithmTransform object.
AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform: Creates a new AlgorithmTransform object.
AlgorithmTransformBSpline - Class in gov.nih.mipav.model.algorithms: TransformBSpline algorithm This algorithm takes a source image and uses information read in from a .nlt file to perform a nonlinear B-Spline transformation on the image.
AlgorithmTransformBSpline(ModelImage, float[], int[], int, int, float[][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: AlgorithmTransformBSpline - Constructor.
AlgorithmTransformBSpline(ModelImage, float[], int, int, float[][][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline: AlgorithmTransformBSpline - Constructor.
AlgorithmTransformVOI - Class in gov.nih.mipav.model.algorithms
AlgorithmTransformVOI(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
AlgorithmTreParams - Interface in gov.nih.mipav.view.dialogs: This interface contains convenience enumerations for going between the dialog and algorithm of the TRE framework.
AlgorithmTreParams.FieldStrength - Enum in gov.nih.mipav.view.dialogs: Specifies the magnetic field strength of the scanner used.
AlgorithmTreParams.InversionType - Enum in gov.nih.mipav.view.dialogs: Specifies the inversion method used for the scan.
AlgorithmTreParams.ScannerType - Enum in gov.nih.mipav.view.dialogs: Designates the brand of scanner used for processing.
AlgorithmTreParams.Threshold - Enum in gov.nih.mipav.view.dialogs: A three way boolean operator to designate the thresholding option used.
AlgorithmTreT1 - Class in gov.nih.mipav.model.algorithms: This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
AlgorithmTreT1(double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
AlgorithmTreT1(ModelImage, ModelImage, double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
AlgorithmTreT1.CalculateT1 - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner - Class in gov.nih.mipav.model.algorithms
AlgorithmTreT2 - Class in gov.nih.mipav.model.algorithms: This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
AlgorithmTreT2(ModelImage, ModelImage, JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
AlgorithmTreT2(JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
AlgorithmTrilateralFilter - Class in gov.nih.mipav.model.algorithms.filters: This is a port of openCVtrilateralFilter.h and openCVtrilateralFilter.cpp written by Tobi Vaudrey.
AlgorithmTrilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
AlgorithmTrilateralFilter(ModelImage, ModelImage, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
AlgorithmTwoMRIImagesSNR - Class in gov.nih.mipav.model.algorithms: This module implements the National Electrical Manufacturers Association (NEMA) standard for SNR estimation in diagnostic MRI.
AlgorithmTwoMRIImagesSNR(ModelImage, ModelImage, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR: Creates a new AlgorithmTwoMRIImagesSNR object.
algorithmType - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
AlgorithmUnionFindComponentLabelling - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindComponentLabelling(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
AlgorithmUnionFindWatershed - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
AlgorithmUnionFindWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
AlgorithmUnionFindWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
AlgorithmUnsharpMask - Class in gov.nih.mipav.model.algorithms.filters: Calculates the Unsharp Mask of an image at a scale defined by the user ( unsharp image = original image - weight * blurred image); weight < 1;
AlgorithmUnsharpMask(ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: Constructor.
AlgorithmUnsharpMask(ModelImage, ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: Constructor.
AlgorithmVesselEnhancement - Class in gov.nih.mipav.model.algorithms
AlgorithmVesselEnhancement(ModelImage, ModelImage, double[][], double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
AlgorithmVOIExtraction - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmVOIExtraction(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Creates a new AlgorithmVOIExtraction object.
AlgorithmVOIExtractionPaint - Class in gov.nih.mipav.model.algorithms: DOCUMENT ME!
AlgorithmVOIExtractionPaint(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Constructor for finding the borders of the paint on various slices of an image.
AlgorithmVOIExtractionPaint(ModelImage, BitSet, int, int, int, short) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Construct the extractor for paint extraction to a VOI.
AlgorithmVOIHausdorffDistance - Class in gov.nih.mipav.model.algorithms: Algorithm class for finding Hausdorff distance on 2 VOIs
AlgorithmVOIHausdorffDistance(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance: constructor
AlgorithmVOILogicalOperations - Class in gov.nih.mipav.model.algorithms: Algorithm class for performing logical operations on VOIs
AlgorithmVOILogicalOperations(ModelImage, ViewVOIVector, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations: constructor
AlgorithmVOIProps - Class in gov.nih.mipav.model.algorithms: This class calculates a properties of an image defined by a VOI.
AlgorithmVOIProps(ModelImage, int, JPanelPixelExclusionSelector.RangeType, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor. note that if there are no VOIs to act on, this constructor returns quietly.
AlgorithmVOIProps(ModelImage, int, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor.
AlgorithmVOIProps(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: constructor. sets the source image of the algorithm, and presets the algorithm to calculate properties of 3D images as a volume of interest, rather than by slice.
AlgorithmVOIProps.Calc34D - Class in gov.nih.mipav.model.algorithms
AlgorithmVOIProps.Calc34D.ContourStats - Class in gov.nih.mipav.model.algorithms: Stores the statistics for a single contour, color or grayscale.
AlgorithmVOIShapeInterpolation - Class in gov.nih.mipav.model.algorithms
AlgorithmVOIShapeInterpolation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: constructor
AlgorithmVOIShapeInterpolation(ModelImage, int, VOIContour, int, VOIContour, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: constructor
AlgorithmVOISimplexOpt - Class in gov.nih.mipav.model.algorithms: Perform Simplex Optimization on a VOI that has been propagated to a slice to find a transformation which will make an affine "fit" a structure which the VOI fit on the previous slice (used in RFASegTool when propagating liver segmentation VOIs).
AlgorithmVOISimplexOpt(ModelImage, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Set up the algorithm to perform optimizations on an image.
AlgorithmVOISimplexOpt(ModelImage, VOIContour, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: Set up the algorithm to perform optimizations on an image.
AlgorithmVOISimplexOpt.CostFunction - Class in gov.nih.mipav.model.algorithms: Class for specifying optimization function for the simplex opt algorithm.
AlgorithmWatershed - Class in gov.nih.mipav.model.algorithms: This program applies the watershed algorithm to the image.
AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Constructs new watershed algorithm.
AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Constructs new watershed algorithm.
AlgorithmWatershed.Seed - Class in gov.nih.mipav.model.algorithms: Simple class to hold seed point and basin (object label) value.
AlgorithmWaveletFuse - Class in gov.nih.mipav.model.algorithms.filters: MIT License Copyright (c) 2021 Hans Brouwer, Riyo Wanagiri Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
AlgorithmWaveletFuse() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
AlgorithmWaveletFuse(ModelImage, ModelImage, ModelImage, int, PyWavelets.WAVELET_NAME[], int[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
AlgorithmWaveletThreshold - Class in gov.nih.mipav.model.algorithms.filters: In hard thresholding a wavelet coefficient whose magnitude is below the product of threshold and the maximum wavelet magnitude is zeroed, and a wavelet coefficient whose magnitude is greater than or equal to the product is left unchanged.
AlgorithmWaveletThreshold(ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Creates a new AlgorithmWaveletThreshold object.
AlgorithmWaveletThreshold(ModelImage, ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: Creates a new AlgorithmWaveletThreshold object.
AlgorithmWSinc - Class in gov.nih.mipav.model.algorithms: Sinc function windowed with Hanning window function used for interpolation This function will create images with greater maximums and lower minimums than the original image, so if the input image type is BYTE or UBYTE, the output image type should be a SHORT.
AlgorithmWSinc() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWSinc: AlgorithmWSinc - default constructor.
algoRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
algoSelection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
algoSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
algoSepConvolver - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverB - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverG - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSepConvolverR - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion: Handle to the separable convolution kernel.
algoSub - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
algoTal - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: or if the source image is to be replaced.
algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
algoTransB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
algoTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample: The algorithm.
algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: handle to algorithm
algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Algorithm for computing VOI statistics
alias - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
alias - Variable in class gov.nih.mipav.view.ShortCutted: DOCUMENT ME!
aliasButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase: Selection buttons
aliasField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
aliasField - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
aliasLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer: DOCUMENT ME!
alignAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: DOCUMENT ME!
alignmentXfrm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
AlignShapes() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Alight shapes
AlignShapes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Normalizes all shapes with respect to position, scale and orientation.
AlignTo(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Wrapper to align this to ref.
AlignTo(CAAMShape, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Aligns this to 'ref' with respect to pose.
AlignTo(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
AlignTo(CDVector, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Linear alignment of this vector to another vector using the L2 norm.
AlignTransformation(CAAMShape, double[], double[], CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the transformation that aligns this to 'ref' with respect to pose.
alim - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
alim - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
alist - Variable in class gov.nih.mipav.model.algorithms.Integration2: The left end points of the subintervals in the partition of the given integration range (lower, upper).
alist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The left end points of the subintervals in the partition of the given integration range (lower, upper).
ALIVE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
all - Variable in class gov.nih.mipav.model.algorithms.libdt.Range
ALL - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: Move all the channel transfer functions.
ALL - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Display all files.
ALL - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: Move all the channel transfer functions.
all_covariance_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
ALL_READERS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
allActive - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Set to true when all contours of a VOI are active.
ALLBACKGROUNDS - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
ALLBITS - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
ALLBITS - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
allButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
allclasses - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
allFiles - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
alloc - Variable in class gov.nih.mipav.model.algorithms.KDTree
alloc_barray(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_fs_workspace(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_funny_pointers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_resnode() - Method in class gov.nih.mipav.model.algorithms.KDTree
alloc_sarray8(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
alloc_sarray9to12(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
allocate_edge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_face_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_halfedge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocate_vertex_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODE
allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODEEP
allocateCompressStructures() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
allocateData() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Allocates data based on the data type and dataSize.
allocateElement() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter: Allocates a new element for the PixelConvertingSpliterator (will be called once per split)
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
allocateMemory(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Method that actually allocates the memory.
AllocateMemory() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
allocateTemporaryBufferInterleaved(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
allocateTemporaryBufferPlanar(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
AllocateUserFields() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Allocates room for the three user defined fields.
Allocator<T> - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
Allocator() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
AllocatorState - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
AllocatorState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AllocatorState
allowableBlockSize - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
allowChangesMinMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: allow changes to the min and max boundaries *
allowChangesWin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel: allow changes to the window and level boundaries *
allowDataWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: If true, allow data window output
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
allowPaddedWarping - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
allPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: true if no slices are missing.
allRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
allRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
allSeamCellIDs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
allSlices - Variable in class gov.nih.mipav.model.structures.VOIProtractor: Set to true, displays this protractor object for any z-value.
allSlicesRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter: DOCUMENT ME!
allSlicesTouched() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume
allTimes - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
ALLTREEA - Static variable in class gov.nih.mipav.view.JPanelTreeController
ALLTREEB - Static variable in class gov.nih.mipav.view.JPanelTreeController
AllTripletsWithinBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
allVOIBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
allVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation for all volumes
allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < offset to center of patch.
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < offset to center of patch.
allx - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < all x-locations on step grid.
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor: < all x-locations on step grid.
ally - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
allz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < all y-locations on step grid.
allz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
alnrel(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
aLog - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
aloneMenu - Variable in class gov.nih.mipav.view.ViewUserInterface: Stores all stand-alone menus that have been created by the user.
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion: Original code from dispersionMap.m, multiscaleBlending.m, remapFun.m, robustNormalization.m, runsef.m, and sef.m located at https://github.com/chlsl/simulated-exposure-fusion-ipol was written by Charles Hessel and is being ported to Java with his permission.
alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
alpha - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
alpha - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: The structure sensitive parameter
alpha - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
alpha - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
alpha - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.decision_function
alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alpha - Variable in class gov.nih.mipav.model.algorithms.ODE
alpha - Variable in class gov.nih.mipav.model.algorithms.ODEEP
alpha - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
alpha - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
alpha - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Bias learning rate.
alpha - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
alpha - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: alpha channel
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Structure sensitive parameter
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Alpha smoothing factor.
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm.decision_function
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
ALPHA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
ALPHA - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The alpha channel transfer function.
alpha_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
alpha_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
alpha_measure(int, double[], int, int, int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
alpha_sq_norm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
alpha_status - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
alpha_status - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
alpha0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
alpha0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
alphaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: arrays of 12 values used for Talairach conversions.
alphaBlend - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: AlphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage: AlphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Indicates the amount of blending when two images are loaded in the image frame.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: alphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: alphaBlending values for compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Value used to control the display when compositing two images.
alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameBase: Indicates the amount of blending when two images are loaded in the image frame.
alphaBright - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
alphaBright - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
alphaDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
alphaDim - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
alphaLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Fucntion that attenuates image values.
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
alphaPrime - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume: AlphaBlending values for compositing two images.
alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Value used to control the display when compositing two images.
alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Alpha blend slider.
alphaSlider - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
alphatau - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
alphaText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh: Text field for getting alpha smoothing factor.
alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
als_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ALS_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
alsoAcpc - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
alsoOrig - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
altBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
altCommand - Variable in enum gov.nih.mipav.view.Argument.InstanceArgument: Alternate commands for a given action
altCommand - Variable in enum gov.nih.mipav.view.Argument.StaticArgument: Alternate commands for a given action
AlternateLinearSolverAndPreconditionerForSchurTypeLinearSolver(CeresSolver.SolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
alternateRowCount - Variable in class gov.nih.mipav.view.AlternatingTableCellRenderer: DOCUMENT ME!
alternating_onmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ALTERNATING_ONMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
AlternatingTableCellRenderer - Class in gov.nih.mipav.view: Title: AlternatingTableCellRenderer
AlternatingTableCellRenderer() - Constructor for class gov.nih.mipav.view.AlternatingTableCellRenderer: Creates a new AlternatingTableCellRenderer object.
altPressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
altTimeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeDicomTag - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeTag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
altTimeTagField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
altTimeTagLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
always_split_variable_names - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
AmAl() - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
aMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight: The colors associated with the light, typically all white.
ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial: DOCUMENT ME!
AMBIENT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot: DOCUMENT ME!
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Define attenuation lighting colors.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: Attenuation lighting setup.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe: Ambient, emissive, sepcualar, diffuse color is used for the attenuation lighting.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: Attenuation lighting setup.
ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Attenuation lighting colors.
ambientRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Radio button for different light type.
ambientRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Radio button for different light type.
Ami - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
Amj - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
amp - Variable in class gov.nih.mipav.model.algorithms.FitGaussian: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.FitLorentz: Amplitude parameter
amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
amp_max - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
amp_min - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
ampFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian: DOCUMENT ME!
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian: An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
amplificationIndex - Variable in class gov.nih.mipav.model.file.FileInfoZVI
amplitude - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
AN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
Analysis(double[], double[], String, String, String, int, String, double, boolean, boolean, String, String, String, String) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
analysisGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
analyticContinuationUsed - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: If false, function used If true, analytic continuation of function used.
analyticJacobian - Variable in class gov.nih.mipav.model.algorithms.NESolve
analyze() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
Analyze(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Warpper to analyze the image.
Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyze image.
Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: This method samples the image intensities under a user-supplied shape into a texture vector.
Analyze(CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Warpper to analyze the image.
Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Analyze image
Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: This method samples the image intensities under a user-supplied shape into a texture vector.
ANALYZE - gov.nih.mipav.model.algorithms.SIFT3D.im_format
ANALYZE - Static variable in class gov.nih.mipav.model.file.FileUtility: Analyze format (Mayo). extension: .img, .hdr
ANALYZE_AUX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_AXIS_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_CAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DATATYPE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DBNAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_DESCRIPTION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyze_dst_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ANALYZE_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Multiple files of type analyze.
ANALYZE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
ANALYZE_ORIGINATOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyze_src_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
ANALYZE_VOX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
analyzeFile - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice: Radio button to indicate that an analyze img file should be written out.
AnalyzeTest(CAAMShape, CAAMShape, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Benchmarks the software warping method against the OpenGL.
ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni: funcType for anatType == true.
ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni: funcType for anatType == true.
anatomicalRef - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 84 - 3 bytes - Anatomical Reference.
anatomyParentnameString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
anatType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
anchor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
anchor(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the livewire contour.
anchor(Point) - Method in class gov.nih.mipav.view.Rubberband: Anchors the rubberband to this point.
anchor(Point) - Method in class gov.nih.mipav.view.RubberbandLivewire: Calls seed on this point to set up costGraph array; then anchors point.
anchorBSpline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the BSpline line contour.
anchorPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: DOCUMENT ME!
anchorPolyline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Add an anchor point to the poly line contour.
AnchorPosition() - Constructor for enum gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
anchorPt - Variable in class gov.nih.mipav.view.Rubberband: DOCUMENT ME!
anchorPt - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
and - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: radio button
AND - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
andButton - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
andTable - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
angioFlag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
angle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
angle - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureOrientation
angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc: < radius or scale
angle - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.polygon
angle - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
angle(double[], boolean[], int[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
angle(float[], float[], float[]) - Static method in class gov.nih.mipav.util.MipavMath: Calculates the angle between two lines.
angle(LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
angle(Point3, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
Angle(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
ANGLE - gov.nih.mipav.model.file.FileInfoBase.UnitType
angle_rad_2d(double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
ANGLE7(double[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AngleAxisNearZeroRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
AngleAxisRotatePoint(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
AngleAxisRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
AngleAxisToQuaternion(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
AngleAxisToRotationMatrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
angleIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
angleIncrement - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
ANGLES(int, double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
anglesRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
anglesRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
ANGSTROMS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement angstroms.
ANGSTROMS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement angstroms.
ANGSTROMS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - angstroms.
angulationCorrection(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
animate() - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate: Invoke the animation frame.
Animate() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
animateAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
animateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animateCheckerboard() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
animateCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateLatticeModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateLattices - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
animateStop - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
animateThread - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animateTime - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animating - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
animationFrame - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
animationThread - Variable in class gov.nih.mipav.view.LineMeter: monitor animation happens in its own thread.
aniSampleRate - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
anisotropyBrowseButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
anisotropyBuffer - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy file data buffer *
anisotropyFilename - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: names of eigenvector and anisotropy files*
anisotropyFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: names of eigenvector and anisotropy files*
anisotropyImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy src image *
anisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy src image *
anisotropyLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: labels *
anisotropyMax - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy max *
anisotropyMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy max *
anisotropyMax - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy max *
anisotropyMaxPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
anisotropyMaxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
anisotropyMaxSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
anisotropyMaxSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
anisotropyMaxTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
anisotropyMaxTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anisotropyMin - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: anisotropy min *
anisotropyMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: anisotropy min *
anisotropyMin - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: anisotropy min *
anisotropyMinPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
anisotropyMinPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
anisotropyMinSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: various sliders in dialog *
anisotropyMinSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: various sliders in dialog *
anisotropyMinTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: textfields *
anisotropyMinTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anisotropyPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: textfields *
anlerr(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
anls_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ANLS_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
annimationSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
annotatePtsCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: number of annotate points along the specified path.
annotatePtsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: annotate path planning points list
annotateVideos() - Method in class gov.nih.mipav.model.algorithms.libdt
Annotation - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
ANNOTATION - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type ANNOTATION for adding text annotations to an image.
ANNOTATION - Static variable in class gov.nih.mipav.view.ViewJComponentBase: Indicates the MIPAV cursor is in annotation VOI mode
annotationAnimationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationChanged() - Method in interface gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.AnnotationListener: AnnotationListeners are updated whenever annotations change in the LatticeModel.
annotationChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationChanged(VOI, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationDiameters - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationGroupList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationGroupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationGroupTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
annotationLabelsDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
AnnotationListener - Interface in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
annotationListeners - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationListPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationNextButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationPrefix - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationPrefix() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationPrevButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
annotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
annotationSpheres - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationSpheresIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
AnnotationSplineControlPts() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
annotationsStraight - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
annotationTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML: DOCUMENT ME!
annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
annotationVOI - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
annotationVOIsUpdate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
annotationWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
ANON_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
anonDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
anonymizationComplete(JDialogAnonymizeDirectory.AnonymizeDicomDirectories) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: A psuedo-event-handler.
anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X
anonymize(boolean[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc: Removes requested identifying info.
anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: removes any and all personal information in the info that a doctor, patient, researcher may want to have deleted from the image, such as patient name or patient ID number--from this slice given by this fileInfoDicom.
anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Anonymize the image by altering the sensitive data of each slice to something generic.
anonymize(boolean[], boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: New version of anonymize that allows you to replace the original tag value with a blank string or zero depending on the data type.
anonymizeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
AnonymizeDicomDirectories(File[], File, String, int, int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: sets up the anonymizer thread.
anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Find face, blur face, commit, or cancel based on which buttons in the dialog are pressed.
anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Executes the de-facing algorithm.
anonymizeImage(File, File, int[], int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: actually does the grunt-work of reading the designaated image-file, anonymizing it, and writing the file to the deisgnated destination directory.
anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize public tags that do not appear in the DICOM Supplement 55.
anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize public tags that do not appear in the DICOM Supplement 55.
anonymizer - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Access to the running thread which is anonymising directories.
anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom: Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage: Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
anonymizeTagIDs - Static variable in class gov.nih.mipav.model.file.FileInfoDicom: these are the DICOM tag ID numbers corresponding to the tags which are anonymized.
anonymousName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
aNormal - Variable in class gov.nih.mipav.model.file.FileGESigna4X
aNormal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
ANOTHER_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: AC-PC: Another midsagittal reference point.
anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
anotherMidSagPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
anotherPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
anotherPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
anotherPtDicom - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ansR - Variable in class gov.nih.mipav.model.algorithms.Statistics
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Final answer after registration.
answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Final answer after registration.
ANTERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage: Talairach: Anterior reference point.
anteriorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni: markers used for +ACPC to +tlrc transformation.
anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
ANTI_SYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
antialiasing - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
antigradient2Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: DOCUMENT ME!
antigradient2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
antigradient3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
AntipodalCornerIndex(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
ANY_DIR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Indicates boundary can move in or out.
Aopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
ap - Variable in class gov.nih.mipav.model.file.FileZVI
apCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
apCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
aperture - Variable in class gov.nih.mipav.model.file.FileSVS
aperture - Variable in class gov.nih.mipav.model.file.FileTiff
apertureToFStop(double) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions: Converts an aperture value to its corresponding F-stop number.
apInvert - Variable in class gov.nih.mipav.model.file.FileNRRD: True for RAS and LAS, false for LPS.
APLUSBI - gov.nih.mipav.view.Preferences.ComplexDisplay: Displays complex images in a + bi format
apotomeAutoShutterUsed - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeAveragingCount - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamFilterHarmonics - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamGenericCameraName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamNormalize - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeCamPhaseAngles - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFilterName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFilterStrength - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeFullPhaseShift - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGratingPeriod - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPosition3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeGridPositionChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
apotomeProcessingMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
app0(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app0(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP0 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP0 JPEG segment identifier.
APP0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APP0_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
app1(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app1(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP1 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP1 JPEG segment identifier.
APP1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app10(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app10(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP10 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP10 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app11(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app11(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP11 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP11 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app12(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app12(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP12 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP12 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app13(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app13(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP13 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP13 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app14(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app14(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP14 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP14 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APP14_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
app15(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app15(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP15 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP15 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app2(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app2(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP2 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP2 JPEG segment identifier.
APP2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app3(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app3(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP3 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP3 JPEG segment identifier.
APP3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app4(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app4(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP4 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP4 JPEG segment identifier.
APP4 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP4 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app5(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app5(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP5 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP5 JPEG segment identifier.
APP5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app6(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app6(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP6 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP6 JPEG segment identifier.
APP6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app7(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app7(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP7 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP7 JPEG segment identifier.
APP7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app8(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app8(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP8 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP8 JPEG segment identifier.
APP8 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP8 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
app9(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
app9(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
APP9 - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APP9 JPEG segment identifier.
APP9 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
APP9 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
APPA - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPA (App10) JPEG segment identifier.
APPB - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPB (App11) JPEG segment identifier.
appBody - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
APPC - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPC (App12) JPEG segment identifier.
appConeHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
appContext - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: Application context PDU type.
APPD - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPD (App13) JPEG segment identifier.
AppData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.AppData
APPE - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPE (App14) JPEG segment identifier.
append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt: Append an element to the end of the storage array.
append(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt: Append an element to the end of the storage array.
append(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText: Appends the text area with the message.
append(String) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Appends the text area with the message.
append(String, int) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Appends the text area with the message.
append(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMessage: Method to append text to an attached JTextArea (not DEBUG or DATA areas).
APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: File handler output mode - append.
append_block(CopyMoveAttackDetection2.Block) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
appendAgePart(StringBuilder, int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
AppendArrayToString(int, double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
appendButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Button for appending selected rows to end of JTable
AppendCols(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
appendDefaultData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: appends a non editable row to the end of the primary table.
AppendDiagonal(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
AppendE(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendI(int, IDList, IDList, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
appendImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoXML: Appends a string to the image description.
appendInvestigatorData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the investigators table.
appendKey(String) - Method in class gov.nih.mipav.model.structures.CustomHashtable: Starts with a key that already exists in the hashtable and appends integers to its toString().
appendLengthTag(FileDicomTag, HashMap<Integer, FileInfoDicom.LengthStorageUnit>) - Method in class gov.nih.mipav.model.file.FileInfoDicom
appendMessage(String) - Method in class gov.nih.mipav.view.JPanelProgressBar: DOCUMENT ME!
appendMessage(String) - Method in interface gov.nih.mipav.view.ProgressBarInterface: DOCUMENT ME!
appendMessage(String) - Method in class gov.nih.mipav.view.ViewJProgressBar: Concatenates a message to the message area of the progress bar.
AppendN(LODMesh.Triangle, LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendNE(LODMesh.Edge, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendNE(LODMesh.Edge, LODMesh.NEList, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
appendParameter(String, String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row with the given parameter data to the proper set display table.
appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the editable table.
appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends a non editable row to the end of the primary table.
appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
AppendRows(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
AppendRows(CeresSolver.CompressedRowSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
AppendRows(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
appendScanData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the scan information table.
appendSecondaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the Secondary Info table.
appendSecondaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: appends a row to the end of the editable table.
appendSendMessage(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Appends the text area with the message.
appendSubjectData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the subject information table.
AppendT(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
appendTagData(String, String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: appends an editable row to the end of the tag table.
appendToFile(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
appendUserDefinedData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor: DOCUMENT ME!
AppendV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
AppendVF(int, IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
APPF - gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType: APPF (App15) JPEG segment identifier.
appHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
AppleMakernoteDescriptor(MetadataExtractor.AppleMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
AppleMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory
AppleRunTimeMakernoteDescriptor(MetadataExtractor.AppleRunTimeMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
AppleRunTimeMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
AppleRunTimeReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeReader
AppletFrame - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
AppletFrame(String, Applet, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.AppletFrame
applicationName - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
appliedCorrections - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
APPLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
APPLY - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
apply_Affine_xyz(SIFT3D.Affine, double, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
apply_Sep_FIR_filter(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
applyACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
applyBackpropagation(Double[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Apply button is used to apply the setting of the dialog.
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Applies bounding box/shading/name display and other UI changes to ModelImage
applyButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Apply button is used to apply the setting of the dialog.
applyClipFilter(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
applyClosePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: The panels that make up this Dialog
applyColorChange() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Update the color changes to the Before sphere and the original surface.
applyColorChange() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Update the color changes to the Before sphere and the original surface.
applyComponentOrientation(ComponentOrientation) - Method in class gov.nih.mipav.view.JScrollMenu
applyDefField(ModelImage, ModelImage, int, Matrix, ModelImage, int[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Creates a deformation field from the input matrix and deformation field and applies it to the input image.
applyDeformationField(int, TransMatrix, TransMatrix[], ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection: Applies the input B0 to T2 matrix, list of within-volume matrices and input deformation field to the 4D volume series.
ApplyForAcceptance(CAAMInitializeStegmann.CAAMInitEntry) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: Apply for acceptance of a new initialization hypothesis.
applyGenericName() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: converts the name and sequence JTextFields into native types.
applyK(double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
applyKColor(double[][][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitGaussian: Apply small kernel to smooth out data.
applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitLorentz: Apply small Gaussian kernel to smooth out data.
ApplyOrdering(HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.OrderedGroups<double[]>, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
applyppftfilter(double[][][][], double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
applyRotation(double[][], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: applySculpt: abstract function, implementation depends on whether the instance is VolumeTextureSculptor or VolumeSculptor.
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor: applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor: applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender: Apply the sculpt region to the volume.
applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Apply the sculpt region to the volume.
applySculpt(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Apply the sculpt region to the volume data.
applySculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor: Cull the sculpt region through the 3D volume.
applySculptRegion(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM: Cull the sculpt region through the 3D volume.
applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: false = apply algorithm only to VOI regions apply same threshold to all.
applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: false = apply algorithm only to VOI regions apply same threshold to all.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: DOCUMENT ME!
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: DOCUMENT ME!
applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: DOCUMENT ME!
applyToBlueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable blue threshold.
applyToGreenBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable green threshold.
applyToRedBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: enable red threshold.
applyWindowLevel - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI: Flag to indicate to apply window level or not.
applyWorldToModelTransform(Matrix3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
applyWorldToModelTransform(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet: Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
APPN_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
approveSelection() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
ApproxExample(String, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Doing model approximation of an (unseen) example.
approximate_eigenvalue_scale_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe: DOCUMENT ME!
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe: DOCUMENT ME!
appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: Thermal probe appearance.
Aprod(int, int, int, int[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
Aprod(int, int, int, int[], int[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
aprod_ez(LSQR.lsqr_solver_ez, int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR
aprod1(LSQR.lsqr_solver_ez, int, int, int, int, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR: !
aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: set to give 2 digits to the right of the decimal.
aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: set to give 2 digits to the right of the decimal.
apser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
APSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
AQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
aradd(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts two arrays of numbers, a and b, and returns the sum of the array c.
arbiMouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Mouse Rotate behavior of the arbitrary clipping plane.
arbiTG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Tranform group for arbitrary clipping plane.
arbiTrans3d - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
arbitrary_SG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary clipping plane switch group.
ArbitratyEquation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
ArbRotate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip: Scene-graph node for rotating the arbitrary clipping plane.
ARCH_ALPHA - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an alpha system architecture.
ARCH_AMD64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an amd64 system architecture.
ARCH_ARM - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an arm system architecture.
ARCH_IA64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an ia64 (itanium) system architecture.
ARCH_MIPS - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a mips system architecture.
ARCH_PA_RISC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a PA RISC system architecture.
ARCH_PPC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a 32-bit power pc system architecture.
ARCH_PPC64 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a 64-bit power pc system architecture.
ARCH_SPARC - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates a sparc system architecture.
ARCH_UNKNOWN - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an unknown system architecture.
ARCH_X86 - gov.nih.mipav.view.Preferences.SystemArchitecture: Indicates an x86 system architecture.
architecture - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry
ArcTan2(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
ArctanLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
ARCTY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ard - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ard - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg
area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.PolygonShapeInfo
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
area() - Method in class gov.nih.mipav.model.structures.VOI: Finds the area of the entire VOI of the VOIContour type only.
area() - Method in class gov.nih.mipav.model.structures.VOIBase
area() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Calculate the surface mesh area.
area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
area(float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Shape area computation
area(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
area(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Returns the total area of all triangles in the mesh.
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Returns the area.
Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
Area(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Returns the total area of the shape (with holes excluded).
area_measure(int, double[], int, int, int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
areaDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean
areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2
areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
areaLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: The area label.
areaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: The area label.
areaText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Displays the area of triangle.
areaText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Displays the area of triangle.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates twice the area (cross product of two vectors) of a triangle given three points.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: Calculates twice the area (cross product of two vectors) of a triangle given three points.
areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget: Determines which side of the line a point lies on, used for determining if a point is inside or outside a closed loop.
areMultipleAllowed() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
areSiblingsSelected(TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p: DOCUMENT ME!
arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s: DOCUMENT ME!
argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
ARGB - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
ARGB - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
argb_bounded(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit ARGB color components into a single 32bit integer value.
argb_bounded(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
argb_fast(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs 8bit ARGB color components into a single 32bit integer value.
argb_fast(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs 8bit ARGB color components into a single 32bit integer value.
ARGB_FLOAT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
ARGB_FLOAT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
ARGB_FLOAT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - floats).
argb_fromNormalized(double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
argb_fromNormalized(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel: Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
ARGB_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned bytes).
ARGB_UINTEGER - gov.nih.mipav.model.structures.ModelStorageBase.DataType
ARGB_UINTEGER - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
ARGB_UINTEGER_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
ARGB_USHORT - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
ARGB_USHORT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
ARGB_USHORT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned shorts).
ARGIN1(double, double, int, double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ARGUM(double, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
Argument - Interface in gov.nih.mipav.view
Argument.InstanceArgument - Enum in gov.nih.mipav.view
Argument.StaticArgument - Enum in gov.nih.mipav.view
arial13 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
arial13 - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, plain, arial font.
arial13B - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
arial13B - Static variable in class gov.nih.mipav.view.MipavUtil: A 13 point, bold, arial font.
arith_ac_K - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_code - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_dc_L - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_dc_U - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
arith_decode(libjpeg.jpeg_decompress_struct, int[]) - Method in class gov.nih.mipav.model.file.libjpeg
arith_entropy_decoder() - Constructor for class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
ARMIJO - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType
ArmijoLineSearch(CeresSolver.LineSearchOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArmijoLineSearch
armult(double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts array a and scalar b, and returns the product array c.
arrangeCTZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in CTZ order.
arrangeCZT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in CZT order.
arrangeTCZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in TCZ order.
arrangeTZC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in TZC order.
arrangeZCT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in ZCT order.
arrangeZTC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence: Arrange the table in ZTC order.
array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
array - Variable in class gov.nih.mipav.model.algorithms.CVODES.UserData
array - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t
ARRAY - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
array1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
array1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
array2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
arrayCopy(double[], int, float[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a double array to a float array.
arrayCopy(float[], int, double[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil: Copy a float array to a double array
ArrayIndexingOrderValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
ArrayInfo() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo
arrayLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Size of buffers (realData and imagData).
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Size of buffers (realData and imagData).
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
ArrayListTransferable(ArrayList<String>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable: Creates a new ArrayListTransferable object.
ArrayListTransferHandler() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: Creates a new ArrayListTransferHandler object.
arrayLocationArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
arrayName - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB
arrayPos - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
arraySizeArray - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
ArraySorter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm: Copyright (c) 2007-2014 The LIBLINEAR Project.
ArraySorter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter
arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
ArrayUtil - Class in gov.nih.mipav.util: A class containing Array-related helper methods.
ArrayUtil() - Constructor for class gov.nih.mipav.util.ArrayUtil
ArrayUtilsFindInvalidIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
ArrayUtilsIsArrayValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
Arrow(boolean, int, int) - Constructor for class gov.nih.mipav.model.structures.TableSorter.Arrow: Creates a new Arrow object.
Arrows - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileGESigna4X
arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
arsub(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Accepts two arrays and subtracts each element in the second array b from the element in the first array a and returns the solution c
ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Value which indicates a voxel that is part of the arterial vasculature tree.
ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Value which indicates a voxel that is part of the arterial vasculature tree.
artist - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
artist - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ARTIST - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
ARTIST - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
Arw - gov.nih.mipav.model.file.MetadataExtractor.FileType: Sony camera raw.
arydiv(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Returns the complex number resulting from the division of four arrays, representing two complex numbers.
AS - gov.nih.mipav.model.file.FileDicomTagInfo.VR
asag_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ASAG_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
ASCENDING - Static variable in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
ASCII - gov.nih.mipav.model.file.FileSVS.Type: 7 bit ASCII
ASCII - gov.nih.mipav.model.file.FileTiff.Type: 7 bit ASCII
ASCII - Static variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
ASCII - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
ASCII - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
ASCII - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets
asciiFormat - Variable in class gov.nih.mipav.model.file.FileMetaImage
asciiText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
asciiTextArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
asComponent() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
asComponent() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas: Implicit cast of this canvas to a class extending Component.
aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: 1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: 1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
Asf - gov.nih.mipav.model.file.MetadataExtractor.FileType
ASF2PTS(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Converts AAM-API shape files (.asf) to the ISBE .pts format.
asin() - Method in class gov.nih.mipav.util.DoubleDouble: For all -1 < x < 1, arcsin(x) = x + x**3/(2*3) + (1 * 3 * x**5)/(2 * 4 * 5) + (1 * 3 * 5 * x**7)/(2 * 4 * 6 * 7) + ...
asinh(double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
aSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Which arbitray clipping slice is currently displayed.
asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
asm - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
asm - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ASM_2D_example() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_align_data_inverse2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_align_data2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_ApplyModel2D(ModelImage, AlgorithmASM.TData, AlgorithmASM.SData, AlgorithmASM.AppData[], AlgorithmASM.Options) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_GetContourNormals2D(double[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_getProfileAndDerivatives2D(ModelImage, double[][], double[][], int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_MakeAppearanceModel2D(AlgorithmASM.ASMData[], AlgorithmASM.Options, AlgorithmASM.AppData[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
ASM_MakeShapeModel2D(AlgorithmASM.ASMData[], AlgorithmASM.SData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
asmCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
asmCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
ASMData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
ASONJ7(double, double, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
asOpenGL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: hardware OpenGL synthesize, currently disabled.
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
AspectRatio() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
ASPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
ASQUC7(double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
assemble_system_dirichlet(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
assemble_system_mixed(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
assert_almost_equal(double[][], double[][], int, String, String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
AssertLossFunctionIsValid(CeresSolver.LossFunction, double, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
assess(double[], int[], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
assign(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (double).
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (double).
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
assign(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator
assign(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Assign operator.
assign(CAAMMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Assignment operator.
assign(CAAMModel) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Assignment operator.
assign(CAAMOptState) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Assignment operator
assign(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Assignment operator
assign(CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Assignment operator.
assign(CAAMReferenceFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Assignment operator.
assign(CAAMReferenceFrame.sScanLinePart) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart
assign(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (CAAMShape).
assign(CAAMShapeCollection) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Assignment operator
assign(CAAMTriangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Assignment operator
assign(CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (CDMatrix).
assign(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Assignment operator (CVisDMatrix).
assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Assignment operator (CAAMShape).
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Assignment operator.
assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
assign(CVisRect) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
assign(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
assign(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
assign(POINT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
assign(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
assign(SIZE) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE
assign(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
assign(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
assign(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
assign(JDialogProstateSegmentationRegBSpline3D.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
assign(JDialogProstateSegmentationRegBSpline3DFast.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
assign_eig_ori(SIFT3D.Image, SIFT3D.Cvec, double, SIFT3D.Mat_rm, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assign_orientation_thresh(SIFT3D.Image, SIFT3D.Cvec, double, double, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assign_orientations(SIFT3D.SIFT3DC, SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
assignCalendar(Calendar, Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Assign source Calendar to target calendar.
assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick image border.
assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick image border.
assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick borders that surround unmasked regions.
assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick borders that surround unmasked regions.
assigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick image border.
assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick image border.
assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2: Assign values to the 1-pixel-thick borders that surround unmasked regions.
assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3: Assign values to the 1-voxel-thick borders that surround unmasked regions.
assignTextons(int[][], double[][][][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
associateAC - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate accept object.
associateRJ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate reject object.
associateRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Associate request object.
asSoftware - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: software synthesize
asString() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns a String representation of this pixel at its current position.
assume_full_rank_ete_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
assumed_blur - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
assumed_blur - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
assumed_blurText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
ASYMMETRIC - gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
asymmetryIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
asymmetryIndexDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
aSyncSubItem - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: DOCUMENT ME!
AT - gov.nih.mipav.model.file.FileDicomTagInfo.VR
at_plus_a(int, int, int[], int[], int[], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
AtA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
atan() - Method in class gov.nih.mipav.util.DoubleDouble: For -1 < x < 1, arctan(x) = x - x**3/3 + x**5/5 - x**7/7 + ...
atan2(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: The atan of this(the imaginary y component) divided by the real component x Value will range from -PI to PI.
AtAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
aText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
AtF - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
AtFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
ATLAS_AC_TO_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - anterior.
ATLAS_AC_TO_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - inferior.
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - lateral.
ATLAS_AC_TO_PC - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: AC to PC dimension.
ATLAS_AC_TO_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - superior.
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_BBOX_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - anterior.
ATLAS_BBOX_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - inferior.
ATLAS_BBOX_INF_NEW - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - inferior new. 3/06/96: extra 10 mm for cerebellum .
ATLAS_BBOX_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - lateral.
ATLAS_BBOX_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - posterior.
ATLAS_BBOX_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach view clipping box - superior.
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_COLLECTION - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
ATLAS_PC_TO_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: Dimensions used for Talairach coordinates - posterior.
atlasBasedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: atlas image:
atlasImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
atLastPos - Variable in class gov.nih.mipav.view.ScrollCorrector: DOCUMENT ME!
atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
atol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
attach(Socket) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket: Attaches this DICOMSocket to a JAVA socket.
attachChildTagTables(FileDicomTagTable[]) - Method in class gov.nih.mipav.model.file.FileDicomTagTable: Sets the list of tag tables which point to this as their reference tag table.
attachedImages - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Text are for displaying the attached images
attachFileInfo(FileInfoMGH, ModelImage) - Method in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
attachmentName - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: Name of the image being attached.
attachSurface(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Attach the generated surface to an image.
ATTDelaunay(double[], double[], int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
attemptLoadFromPackage(String, String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader: Trys to load a action's class, searching in a specific package.
attenuation - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
attenuationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: The attenuation algorithm.
attenuationBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation: The attenuated VOI mask buffer.
attenuationCorrection - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
ATTR_DIM_ALIGNMENT - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_DIRECTION_COSINES - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_LENGTH - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_SPACETYPE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_START - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_STEP - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_DIM_UNITS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_IMAGE_DIM_ORDER - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_IMAGE_VALID_RANGE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_INFO_SLICE_THICKNESS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
ATTR_INFO_STUDY_MODALITY - Static variable in class gov.nih.mipav.model.file.FileMincHDF
attribStr - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: attribute string (for image attributes).
atv(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
ATVMFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
Aty - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
AUC - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
AUC_IGNORE_TIES - gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
author - Variable in class gov.nih.mipav.model.file.FileInfoCZI
author - Variable in class gov.nih.mipav.model.file.FileInfoFits
AUTO_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature: The mode where paint grow seed points are automatically determined and chosen by the user.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Calculate the rotation matrix when the auto camera caputuring the images.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Overrides the parent autoCapture method.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Overrides the parent autoCapture method.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast: Override the parent autoCapture method to capture MIP image volume.
autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp: Override the parent autoCapture method to capture MIP image volume.
autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
autoCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
autoContrast - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
AutoCorrelation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Calculates the autocorrelation of the vector with a given lag (default lag is 1).
AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
autofillButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: DOCUMENT ME!
autofillRequiredFields() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Autofill the dicom required tags to loosely fullfill the dicom standard.
autoLabel - Variable in class gov.nih.mipav.model.structures.VOIBase: Automatically generate the label, unless it is set explicitly:
autoLatticeGenerationOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileGESigna4X
autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
automatic - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
automatic - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
AUTOMATIC_ERROR_REPORTING - gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
automaticCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
autoRun() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface: Causes the FlyPathBehavior to fly down the current path from start to finish and back again.
autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: One round trip path walk through.
autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: One round trip path walk through.
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
autoRunButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Auto Run Button.
autosaveMask() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
autoSequence - Variable in class gov.nih.mipav.model.file.FileNRRD: True if data file: [] encountered If true, autosequence using integer format specification varied according to , , and .
autoShrinkDomain - Variable in class gov.nih.mipav.view.ViewJFrameGraph
autoShrinkDomainCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph
autoShrinkRange - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
autoShrinkRangeCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
autoStartCBREngine - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
autoThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: If true determines the threshold by histogram analysis.
autoThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: If true, ignore srcThreshold input and calculate best value
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: If true, ignore srcThreshold input and calculate best value
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: DOCUMENT ME!
autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: DOCUMENT ME!
autoXmtFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 282 Auto Center Frequency (0.1 Hz).
autoXmtGain - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 286 Auto Transmit Gain (0.1 dB).
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: DOCUMENT ME!
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: auxiliary file
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: DOCUMENT ME!
aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
Aux1Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
Aux2Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
Aux3Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
auxdata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
auxTechnique - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
av(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av2(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av3(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av4(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av5(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
av6(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader: Returns an estimate of the number of bytes that can be read (or skipped over) from this MetadataExtractor.SequentialReader without blocking by the next invocation of a method for this input stream.
available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
availableBits() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
availableBits() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
availableImageList - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel: DOCUMENT ME!
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: available images to concat...the ones that are open in mipav
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: available images to concat...the ones that are open in mipav
availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: available images to concat...the ones that are open in mipav
aVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
Aval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions: < Regularization method for S.
aveH - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
average - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Radio button selected if inserted slices are a weighted average of surrounding slices.
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
AVERAGE - gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator: average
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: DOCUMENT ME!
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
AVERAGE_DECON - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: Average deconvolution is based on the arithmetical mean of the two estimates from A and B separately
AVERAGE_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
AVERAGE_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Average volume type - the inserted volume is set equal to the mean of the 2 surrounding volumes.
averageB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averagedImageCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: DOCUMENT ME!
averageDistanceMaps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation: distance maps
averageG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
averageImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
averageIntensities - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea: DOCUMENT ME!
averageIntensities - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
averageMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageMode - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: DOCUMENT ME!
averagePt - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the average of the contour of a VOI.
averageR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: DOCUMENT ME!
averageSAR - Variable in class gov.nih.mipav.model.file.FileGESigna4X
averageSAR - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
averagesNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
averagesNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
AverageVariance(AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
averagingNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging: DOCUMENT ME!
averagingNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: DOCUMENT ME!
AVGERAGE_WITH_STDEV - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
avgInten - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgInten - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntenR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
avgIntenR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
avgIntensity - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
avgIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
avgIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: average intensities in VOI
avgJ0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
avgPix(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: This method calculates the average pixel value based on the four neighbors (N, S, E, W).
avgPix(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate: This method calculates the average pixel value based on the four neighbors (N, S, E, W).
avgVolIndex - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: Philips puts in one volume as the average of all the DWIs.
Avi - gov.nih.mipav.model.file.MetadataExtractor.FileType
AVI - Static variable in class gov.nih.mipav.model.file.FileUtility: AVI file type.
AVI - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Filter avi files (*.avi).
AVI_COMPRESSION - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase: Label for the avi compression parameter.
AVI_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI is recording.
AVICompression - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
AVIF_HASINDEX - Variable in class gov.nih.mipav.model.file.FileAvi
AVIF_ISINTERLEAVED - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
AVIF_MUSTUSEINDEX - Variable in class gov.nih.mipav.model.file.FileAvi: globals needed for read - set in readHeader, used in readImage.
aviField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
aviPlayButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder Play button.
aviRecordButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder record button.
aviStopButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: AVI Recorder Stop button.
avsimp(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
avsvd(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Awt wake up condition .
awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Awt wake up condition .
AWTImageSourceStream(int, int, int, Image[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream: Creates a new AWTImageSourceStream object.
Ax - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
axes - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
axes - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
axesRatio - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
axesRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
axesRatioLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
axesRatioText - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: axis orientation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: axis oritentation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: axis orietation.
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Axial image type
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Axial image type
Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
AXIAL - gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
AXIAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Axial orientation.
AXIAL_A - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
AXIAL_AB - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
AXIAL_B - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
AXIAL_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient
AXIAL_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: along the major axis (+).
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: (3D only).
AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: (3D only).
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
axialOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Indicates that image orientation is unknown type or not.
AxialVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Axial VOI instance
axioCamAnalogGainEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamBlackReference - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamColorModel - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamDelayTime - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamEnhanceColor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamMicroScanning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamNIRMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamResolution - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamSaturation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamSelector - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamShutterControl - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamShutterSignal - Variable in class gov.nih.mipav.model.file.FileInfoZVI
axioCamType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
AXION - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
AXION1(int[], int[], double[], int, int, int[], int[], int[], double[], double, boolean[], double[], int[], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
axis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit: DOCUMENT ME!
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
AXIS_DEC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: DOCUMENT ME!
AXIS_INC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render selected planes in order of increasing/decreasing coordinate.
AXIS_ORIENTATIONS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations: The label to use for the parameter indicating the new axis orientations
AXIS_UNDEFINED - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Used to represent undefined AXIS_*.
AXIS_X - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume YZ planes in order of increasing/decreasing X.
AXIS_Y - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume ZX planes in order of increasing/decreasing Y.
AXIS_Z - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender: Render volume XY planes in order of increasing/decreasing Z.
axisAligned() - Method in class gov.nih.mipav.view.PatientSlice: Determines if a slice is axis-aligned, based on the m_kFourCorners[] four corners of the slice in 3D Model space.
axisAngle - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisAngle - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: DOCUMENT ME!
axisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList: string to test for when checking on statistics to calculate.
axisDirA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
axisDirB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos: DOCUMENT ME!
axisFlip - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
axisFlip - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
axisLabels - Variable in class gov.nih.mipav.view.ViewJComponentTriImage: Labels for the axes:.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: axis panel.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: axis region.
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: axis region
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
axisMaxs - Variable in class gov.nih.mipav.model.file.FileNRRD: Maximum axis value.
axisMins - Variable in class gov.nih.mipav.model.file.FileNRRD: Minimum axis value.
axisOrder - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
axisOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
axisOrient - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.model.file.FileInfoBase: axis orientation used to support image ordering and display for medical images.
axisOrientation - Static variable in class gov.nih.mipav.model.file.FileInfoMincHDF: The axis orientation static types
axisOrientation - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.model.file.FileNIFTI: R2L, L2R, A2P, P2A, I2S, and S2I orientations of x, y, and z axes.
axisOrientation - Variable in class gov.nih.mipav.model.file.FileNRRD: For each axis R2L, L2R, A2P, P2A, I2S, or S2I
axisOrientation - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
axisOrientation - Variable in class gov.nih.mipav.view.ViewJComponentTriImage
AxisOrientation(int, String) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
axisOrientation2 - Variable in class gov.nih.mipav.model.file.FileNIFTI: When both qform_code > 0 and sform_code > 0, the axis orientation information corresponding to sform_code > 0 is placed in axisOrientation2
axisOrientationStr - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Array of axis orientation strings.
axisPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
axisX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisX - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisY - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
axisZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Value attribute for the roation axis.
axisZ - Variable in class gov.nih.mipav.view.renderer.SceneState: Save the current.
az - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Svec
AZETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
azetac - Static variable in class gov.nih.mipav.model.algorithms.Cephes
AZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
azimuth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
azimuthArray - Variable in class gov.nih.mipav.model.file.FileNIFTI

B

b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion: DOCUMENT ME!
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
b - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
b - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
b - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Input parameter
b - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
b - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
b - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
b - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility: DOCUMENT ME!
b - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP: DOCUMENT ME!
b - Variable in class gov.nih.mipav.model.algorithms.Gamma
b - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input parameter
b - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
b - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
b - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
b - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
b - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
b - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
b - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
b - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
b - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
b - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
b() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
b(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
b(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
b(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
B - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
B() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
B_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
b_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
b_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase: Returns the blue value of this pixel at its current position.
b_counts_int - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b_disp - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
b_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
b_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
b_s_info - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
b_s_info - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
b_s_open - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
b_s_open - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
B_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
B_Y_OFF - Variable in class gov.nih.mipav.model.file.libjpeg
b0CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B0extraction(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Extracts the reference sub-volume from the input 4D image.
B0MatrixFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
b0MatrixFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: File name for the B0 to T2 transformation matrix (needed to populate the next panel in the DTIPipeline)
b0ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
b0ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
b0toStructMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
b0toStructMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: The transformation matrix describing the transformation from registering B0 to T2 image.
B0toStructTransPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
b1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
b1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
b1 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b1 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
b1 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
B1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
b1CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
B1Combo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
b1Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
b1ImageIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
b1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
b1ImageName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
b1ResultData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b1ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b1ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
b2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
b2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
b2 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b2CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B2d - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
b3 - Variable in class gov.nih.mipav.model.file.FileDicom
b3 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b3CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
B3d - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
b4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b4 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b4CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
b5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b5 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b5CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
b6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b6 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b6CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
b7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
b7 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
b8 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
back - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
back - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
back(IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
back(LODMesh.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.Triangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
back(LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
BACK - Static variable in class gov.nih.mipav.model.structures.VOI: Static Variables for VOI and VOI Contour selection.
back_transform(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
backBottomLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backBottomLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backBottomRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backBottomRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
BackfaceCull - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
backForthButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
backForthButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
background - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
background - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The background node for the canvas.
background - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
Background(double[][], double) - Constructor for class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
BACKGROUND - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
background1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: The minimum values that are considered as data values.
background1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
background2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
background2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
backgroundB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
backgroundButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
backgroundColor - Variable in class gov.nih.mipav.model.structures.VOIText: The color used to draw behind the main text (so that the text will stand out)
backgroundColor - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The default background color of JPanels (look and feel dependent).
backgroundColor - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
backgroundColor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The default background color of JPanels (look and feel dependent).
BackgroundColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
backgroundColorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: button to bring up the background color chooser.
backgroundDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
backgroundDistanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Euclidian distance map of the background.
backgroundDistanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Generates a Euclidian distance map of the background.
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: The index of a rerquired noise background VOI.
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
backgroundIndex2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
backgroundLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
backgroundPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph: DOCUMENT ME!
backgroundPresent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
backgroundsDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
backgroundVariance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR: DOCUMENT ME!
backing_store_info() - Constructor for class gov.nih.mipav.model.file.libjpeg.backing_store_info
backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
BackProject(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Back projects a set of PCA model parameters into the original space.
Backpropagation - Class in gov.nih.mipav.model.algorithms: MIT License Copyright (c) 2016 Jason Wu Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
Backpropagation() - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation
Backpropagation.Connection - Class in gov.nih.mipav.model.algorithms
Backpropagation.MainFrame - Class in gov.nih.mipav.model.algorithms
Backpropagation.MainFrame.GPanel - Class in gov.nih.mipav.model.algorithms
Backpropagation.NeuralNetwork - Class in gov.nih.mipav.model.algorithms
Backpropagation.Neuron - Class in gov.nih.mipav.model.algorithms
backSpaceButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
BackSubstitute(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
BackSubstitute(CeresSolver.BlockSparseMatrix, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
BackSubstitute(CeresSolver.BlockSparseMatrix, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminatorBase
backTopLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backTopLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backTopRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backTopRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
backupColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes: Stores the per-vertex colors when the material is set -- used to restore per-vertex color from the AdvancedMaterials dialog.
backupData(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup ModelImage data.
backupImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Called by the TextureSculptor or VolumeSculptor objects.
backupImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called by the TextureSculptor or VolumeSculptor objects.
backupImage(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called by the TextureSculptor or VolumeSculptor objects.
backupMosaic() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic: backupMosaic -- Backs up the reference & tile polygon shapes, borders, ModelImages, and TransformGroups before the registration is called, so that registration can be undone by the user:
backupPaintBitmap() - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Backs up the paintBitmap into the paintBitmapBU variable.
backupSculptImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM: Backup the sculpt image.
backupSecondGaussianRoutine() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
backupZDim - Variable in class gov.nih.mipav.model.file.FileZVI
BACKWARD - Static variable in class gov.nih.mipav.model.structures.VOI: Static Variables for VOI and VOI Contour selection.
bad_block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileSVS
BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileTiff
BAD_TEST_TERM_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
bad_variable - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
badBGLengths() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
badBlockHeader() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
badc1_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
badc1_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
badc2_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
badc2_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
badFaxLines - Variable in class gov.nih.mipav.model.file.FileSVS
badFaxLines - Variable in class gov.nih.mipav.model.file.FileTiff
BadJacobianCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadJacobianCostFunction
BadLocalParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
BadResidualCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadResidualCostFunction
BadTestTerm(int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
bAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK: DOCUMENT ME!
BallPivoting - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
BallPivoting(TriMesh, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
BallPivotingPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
BallPivotingPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
BAND_DQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
BAND_USER - Variable in class gov.nih.mipav.model.algorithms.CVODES
bandButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
bandno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
bands - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
BANDS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef: define the number of bands used in the AAM model. 1 for single intensity channel of MRI prostate grayscale image. 3 for the RGB channels.
bandSpacing - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
bandSpacingCounter - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
bandtypeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
bandwidth(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
bandwidth_frequency - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
bar - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: JMenuBar for loading/saving defaults
BARD - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BARD - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BARD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BARD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
BardFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BardFunction
baricenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
barMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
barMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
BarMeter - Class in gov.nih.mipav.view: BarMeter presents a vertical, block-style meter to present numerical information as a fraction of a number of divisions (eg, progress or resource consumption).
BarMeter() - Constructor for class gov.nih.mipav.view.BarMeter: Constructs a barmeter with a background color of black.
barPanel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti: Panel containing all the progress bars as well as relevent text labels
bary_eps - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
BarycentricGradientPaint(double, double, double, double, double, double, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaint(float[], float[], Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaint(float, float, float, float, float, float, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaint(Point2D, Point2D, Point2D, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint: Creates a new ContourPlot.BarycentricGradientPaint object with specified triangle vertices and vertex colors.
BarycentricGradientPaintContext(Point2D.Float, Point2D.Float, Point2D.Float, Color, Color, Color, AffineTransform, boolean) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
base - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
base - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
base - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
base - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue: DOCUMENT ME!
base - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
base_dither_matrix - Variable in class gov.nih.mipav.model.file.libjpeg
baseAfterNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: In autosequencing number between a capital D and the last period used in generating filenames.
baseBeforeNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: In autosequencing number before percentage sign and period used in generating start of autosequenced filename.
baseBlockSize - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
baseBuffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer: DOCUMENT ME!
baseFunction - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
baseFunctions - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Image for Y-axis of Histogram
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Register match image to base image.
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Base image - register match image to base image.
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Base image - register match image to base image.
baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: DOCUMENT ME!
baseKernels - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
baseName - Variable in class gov.nih.mipav.model.file.FileMetaImage
baseNameforReconstructedSlices - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
baseNumber - Variable in class gov.nih.mipav.model.file.FileNRRD: Used if autosequencing.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Limits the number of iterations of Powell's algorithm when registering the original image against the flipped image.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Advanced optimization settings maxIter in the call to ELSUNC will be an integer multiple of baseNumIter.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Advanced optimization settings maxIter in the call to Powell's will be an integer multiple of baseNumIter.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Limits number of iterations in ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL optimization.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: these numbers hard coded for constructors that don't include them.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Limits number of iterations in elsunc optimization. maxIter in the call to elsunc will be an integer multiple of baseNumIter
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: these numbers hard coded for constructors that don't include them.
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
baseScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet: < index of the first octave.
baseScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry: < Index of the last octave subdivision
baseVOIGradMagSum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt: The sum of the gradient magnitude along the polygon.
baseVOIGradMagSum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark: DOCUMENT ME!
BaseWavelet() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
BasicGrid - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting: BasicGrid Basic Class abstracting a gridded structure in a 3d space; Usueful for having coherent float to integer conversion in a unique place: Some Notes: - bbox is the real occupation of the box in the space; - siz is the number of cells for each side OBJTYPE: Type of the indexed objects.
BasicGrid() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
basicParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
basicParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
basicParametersSurface - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
basicSize - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
basym(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
batch_size - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
batchDistance(Vector<Vector<Double>>, Vector<Vector<Double>>, double[][], int[][], int, int, Vector<Double>, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
BatchDistInvoker(Vector<Vector<Double>>, Vector<Vector<Double>>, double[][], int[][], int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
batchSize - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.WorkDimensions
BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
BayesShrinkThresholdComputation(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
BayesShrinkThresholdComputation(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bb_bounds() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
bbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
bbox() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox
bButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
bc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
BCb - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
BCb - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
BCFSN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BCFSNG(int, int[], int[], int[], double[], double[], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BCFVTF(double[], double[], int[], int[], int[], int[], int, int, double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: If true filter the blue channel.
bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: the blue channel.
bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: when true, indicates whether to process the colour channel.
bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: DOCUMENT ME!
bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: the blue channel.
bcm - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
BCOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BCOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
bColorListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.bColorListener
bcorr(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bd(Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, double[], double, double, double, double[], double, double[], int, int, int, int, boolean, int, double, int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
BD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: DOCUMENT ME!
bdbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
BDF_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
bdl - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
bdrBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Border buffer number of slices.
bdrBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Border buffer number of slices.
bdrBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Border buffer number of rows.
bdrBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Border buffer number of rows.
bdrBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Border buffer number of columns.
bdrBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Border buffer number of columns.
bdtr(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bdtrc(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bdtri(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
be_shrunk(int, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
be_shrunk(int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
be_shrunk(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
be_shrunk(int, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
be_shrunk(int, int, int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
BEALE - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BEALE - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BealeFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BealeFunction
BEAMSPLITTER_ENTRY_FILTER - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BEAMSPLITTER_ENTRY_FILTER_SET - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BEAMSPLITTER_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
beautifyTime(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
BEByteArrayInputStream - Class in gov.nih.mipav.model.file.rawjp2: Big Endian Input Array Stream, works as a replacement for BERandomAccessFile at the input of Jpeg2K decoder.
BEByteArrayInputStream(byte[]) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
BEByteArrayInputStream(byte[], int, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
BEByteArrayOutputStream - Class in gov.nih.mipav.model.file.rawjp2: Big Endian Output Array Stream, works as a replacement for FileFormatWriter at the output of Jpeg2K encoder.
BEByteArrayOutputStream() - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream
BEByteArrayOutputStream(ByteArrayOutputStream, int, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream
BED - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
beenVisited(int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
beep() - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Sound a beep.
beep() - Static method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Sound a beep.
beep() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior: Sound a beep.
BEFORE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Before/After index values for the two displayed spheres, canvases, and display panels:.
BEFORE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Before/After index values for the two displayed spheres, canvases, and display panels:.
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT: Make the dimension be the power of two, and zero pad them.
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2: Make the dimension be the power of two, and zero pad them.
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityMIP: This is a callback to be executed before resampleAll is executed.
beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: This is a callback to be executed before resampleAll is executed.
beforeResampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer: This is a callback to be executed before resampleSingle is executed.
beforeThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
beforeThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
begin - Variable in class gov.nih.mipav.model.file.FileMincVarElem: DOCUMENT ME!
begin_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: The region is grown from the input seeds.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The region-growing fast march.
beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The region-growing fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: An annulus is computed about the boundary of the coarse-level segmentation.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The signed-distance-transform fast march.
beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The signed-distance-transform fast march.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter: Evolve the signed-distance transform in the annulus constructed previously.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2: The level-set evolution.
beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3: The level-set evolution.
beginSlice - Variable in class gov.nih.mipav.model.file.FileWriteOptions: 3D options.
beginTimePeriod - Variable in class gov.nih.mipav.model.file.FileWriteOptions: 4D options.
behaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: The BranchGroup to which the arbitrary behaviors are attached and rotate.
behaviorfix - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
BEHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
BELOW - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
belowThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
bendingMatrix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
Bennett5CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Bennett5CostFunction
Bennett5Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Bennett5Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
bernard(double[], int, double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
BernoulliA(int) - Method in class gov.nih.mipav.util.DoubleDouble
BernoulliB(int) - Method in class gov.nih.mipav.util.DoubleDouble
Bessel - Class in gov.nih.mipav.model.algorithms: This module computes Bessel functions of complex arguments and a nonnegative order.
Bessel(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: Creates a new Bessel object.
Bessel(int, double, double, double, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: This construtor used for I, J, K, and Y Bessel functions.
Bessel(int, double, double, double, int, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: This constructor used for H functions of kind 1 and 2.
Bessel(int, double, double, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel: This constructor is used for Ai and Bi Airy functions.
BESSEL_H - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Bessel functions of the third kind, Hankel functions.
BESSEL_H - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Bessel functions of the third kind, Hankel functions.
BESSEL_I - Static variable in class gov.nih.mipav.model.algorithms.Bessel: modified Bessel function of the first kind.
BESSEL_I - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: modified Bessel function of the first kind.
BESSEL_J - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Bessel function of the first kind.
BESSEL_J - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Bessel function of the first kind.
BESSEL_K - Static variable in class gov.nih.mipav.model.algorithms.Bessel: modified Bessel function of the second kind.
BESSEL_K - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: modified Bessel function of the second kind.
BESSEL_Y - Static variable in class gov.nih.mipav.model.algorithms.Bessel: Bessel function of the second kind.
BESSEL_Y - Static variable in class gov.nih.mipav.model.algorithms.BesselEP: Bessel function of the second kind.
BesselEP - Class in gov.nih.mipav.model.algorithms: This module computes Bessel functions of complex arguments and a nonnegative order.
BesselEP(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: Creates a new BesselEP object.
BesselEP(int, double, double, double, int, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: This constructor used for H functions of kind 1 and 2.
BesselEP(int, double, double, double, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: This constructor used for I, J, K, and Y Bessel functions.
BesselEP(int, double, double, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP: This constructor is used for Ai and Bi Airy functions.
BesselType - Variable in class gov.nih.mipav.model.algorithms.Bessel: DOCUMENT ME!
BesselType - Variable in class gov.nih.mipav.model.algorithms.BesselEP: DOCUMENT ME!
bessInt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
best_csnrs(double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
bestDim(int, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: DOCUMENT ME!
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: DOCUMENT ME!
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: DOCUMENT ME!
bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: DOCUMENT ME!
bestImageIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
bestMap(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
bestMax - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
bestMin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: /**.
bestpg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bestpg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bestSliceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
bestToWorst - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
bestToWorst - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
bestWeight - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
beta - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Total number of entries (= # active nodes)
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
beta - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
beta - Variable in class gov.nih.mipav.model.algorithms.FitLaplace: Beta parameter
beta - Variable in class gov.nih.mipav.model.algorithms.Integration2: parameter in the weight function, beta.gt.(-1) if beta.le.(-1), the routine will end with ier[0] = 6.
beta - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: parameter in the weight function, beta.gt.(-1) if beta.le.(-1), the routine will end with ier[0] = 6.
beta - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: scalar containing the norm of the orthogonal projection of residuals onto the space spanned by the columns of the Jacobian.
beta - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: scalar containing the norm of the orthogonal projection of residuals onto the space spanned by the columns of the Jacobian.
beta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
beta - Variable in class gov.nih.mipav.model.algorithms.ODE
beta - Variable in class gov.nih.mipav.model.algorithms.ODEEP
beta - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
beta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
beta - Variable in class gov.nih.mipav.model.file.FileInfoMRC: DOCUMENT ME!
beta - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
beta - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
beta - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
beta - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
beta(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
BETA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
BETA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
BETA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
beta_c4 - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_f_range - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_hrbu - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
beta_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_init(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_lrb - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
BETA_MAX - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
beta_np_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_p_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta_range_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
beta0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
beta0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
betaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
betaH - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
betaHalflife - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
BETail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
betaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
betaln(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
BetaRand(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
betatau - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
betaW - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
betkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
betkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
betkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
betkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BETWEEN - gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType: Pixels between boundA and boundB (inclusive) will be excluded from a calculation.
bf_flyPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Panel to hold the BrainSurfaceFlattener or Flythrough views.
BFGS - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType
BFGS(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
BFGSUnFac(CDVector, CDVector, CDVector, CDVector, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: Algorithm A9.4.1 p. 355 Input: x, xplus, gc, gplus Input-Output: H Description: The BFGS update is made unless either: i) y'*s < (macheps)^0.5*||y|| or ii) for every i, |(y-Hs)[i]| is less than the estimated noise in y[i].
BFLOAT - Static variable in class gov.nih.mipav.model.file.FileUtility: Extension: .hdr for header, .bfloat for data
bfrac(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
bfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
BFSNC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
BG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: DOCUMENT ME!
BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: DOCUMENT ME!
bgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
bgColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
BgEdge() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge
BgEdgeDetect(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
BgEdgeList() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
BgImage(int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
BgImage(short[], int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
bgISort(int[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
Bgr192ComplexFloat - Static variable in class gov.nih.mipav.model.file.FileCZI: A triple of 2 x 4 byte IEE float, representing real and imaginary part of a complex number, for the color channels blue, green, and red
Bgr24 - Static variable in class gov.nih.mipav.model.file.FileCZI: 8 bit triples, representing the color channels blue, green, and red
Bgr48 - Static variable in class gov.nih.mipav.model.file.FileCZI: 16 bit triples, representing the color channels blue, green, and red
Bgr96Float - Static variable in class gov.nih.mipav.model.file.FileCZI: Triple of 4 byte IEEE float, representing the color channels blue, green, and red
Bgra32 - Static variable in class gov.nih.mipav.model.file.FileCZI: 8 bit triples followed by an alpha (transparency) channel
bgrat(double, double, double, double, double[], double, int[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bgSort(long[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
BGTG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
BGTG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
bgtgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
bgVector - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: Vector to hold all toggle groups for VOI toggle (and custom toggle configurations)
BH - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
BI_ALPHABITFIELDS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 6 = RGBA bit fields
BI_BITFIELDS - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_BITFIELDS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 3 = Bit fields (not OS22XBITMAPHEADER (size 64))
BI_CMYK - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 11 = CMYK
BI_CMYKRLE4 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 13 = CMYK RLE-4
BI_CMYKRLE8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 12 = CMYK RLE-8
BI_HUFFMAN_1D - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 3 = Huffman 1D (if OS22XBITMAPHEADER (size 64))
BI_JPEG - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 4 = JPEG (not OS22XBITMAPHEADER (size 64))
BI_PNG - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 5 = PNG
BI_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_RGB - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 0 = None
BI_RLE24 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 4 = RLE 24-bit/pixel (if OS22XBITMAPHEADER (size 64))
BI_RLE4 - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_RLE4 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 2 = RLE 4-bit/pixel
BI_RLE8 - Static variable in class gov.nih.mipav.model.file.FileBMP
BI_RLE8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression: 1 = RLE 8-bit/pixel
bi_sigma_range0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
bi_sigma_spatial0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
bi_size - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
bias - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Model ($\bw$ vector).
bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem: If bias >= 0, we assume that one additional feature is added to the end of each data instance
bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
BIAS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
BIAS2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
BIAS3 - Variable in class gov.nih.mipav.model.algorithms.CVODES
biasFieldFullWidthAtHalfMaximum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
biasLearningRate - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
biasMultiplier - Variable in class gov.nih.mipav.model.algorithms.SVM.svmtest
biasMultiplier - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm: < Bias.
BICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BICUBIC - gov.nih.mipav.view.Preferences.InterpolateDisplay: Bicubic interpolation
bicubic_interpolation_at(double[], double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Compute the bicubic interpolation of a point in an image.
bicubic_interpolation_cell(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Bicubic interpolation in two dimensions
bicubic_interpolation_warp(double[], double[], double[], double[], int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Compute the bicubic interpolation of an image.
BiCubicInterpolator(CeresSolver2.Grid2D) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
BiCubicInterpolatorTestDegree00Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree01Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree10Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree11Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree12Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree21Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestDegree22Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BiCubicInterpolatorTestZeroFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
bidx - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB: < Minimum distance to an entry
big - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
big - Static variable in class gov.nih.mipav.model.algorithms.Cephes
big - Static variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
big - Static variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BIG - Static variable in class gov.nih.mipav.model.algorithms.Cephes
BIG_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Flag used to indicate Big Endianess.
BIG_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileBase: Byte order.
BIG_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileDicomBase: Byte order.
big_parchk - Variable in class gov.nih.mipav.model.algorithms.NL2sol
BIGd - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
bigEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
bigEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Radio button to denote image is big endian.
bigEndian - Variable in class gov.nih.mipav.model.file.FileBase: DOCUMENT ME!
bigEndian - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data
bigEndian - Variable in class gov.nih.mipav.model.file.RawImageInfo: DOCUMENT ME!
bigEndian - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
BIGGS_EXP6 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BIGGS_EXP6 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BIGGS_EXP6Function() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BIGGS_EXP6Function
biginv - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bilaplace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
bilateral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
bilateral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
bilateralFilter(double[][], int, int, double, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
bilateralFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: DOCUMENT ME!
BilateralGradientFilter(double[][], double[][], double[][], double, double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BilateralGradientFilterLUT(double[][], double[][], double[][], double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
bilinear - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Radio buttons for interpolation methods.
BILINEAR - gov.nih.mipav.view.Preferences.InterpolateDisplay: Bilinear interpolation
BILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Biilinear interpolation.
BILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Biilinear interpolation.
BILINEAR - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom: Action command for bilinear interpolation.
bimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
bimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
bImageUpdate - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Update the LUT in real-time:
bImageUpdate - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update the LUT in real-time:
bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Number of bins for Image1
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Number of bins for first image.
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Bin to use for pixel comparisons
bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Number of bins for each image
bin1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
bin1Default - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Default number of bins for first image.
bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Label description for bin1.
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Textfield for bin1.
bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts: User input of bins
bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: Number of bins for Image2
bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Number of bins for second image.
bin2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
bin2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
bin2Default - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Default number of bins for first image.
bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Label description for bin1.
bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Textfield for bin2.
BINARY_TYPE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: DOCUMENT ME!
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
BinaryCostFunction(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction
BinaryCostFunction2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction2
BinaryCostFunction3(int, int, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
BinaryCostFunction4(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction4
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
BinaryNode - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
BinaryNode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
bincount(int[], int) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
binExt - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data: Elements.
binExternal - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF: must have either: Bin:External or Bin:BinData.
BinExternal(String, String, Integer, URI) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal: Creates a new BinExternal object.
BinExternal(String, String, Integer, URI) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal: Creates a new BinExternal object.
binning - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
BinoRand(double, long) - Method in class gov.nih.mipav.model.algorithms.Fastfit
bins - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Hist
bins - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
binSample(double[][], int) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
binsField - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
binsField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
binText - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
binWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Histogram bin width.
BIOMAGNETIC_IMAGING - gov.nih.mipav.model.file.FileInfoBase.Modality: Image modality biomagnetic imaging.
BIOMAGNETIC_IMAGING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Image modality biomagnetic imaging.
BIOR - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
bior_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_7_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_9_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior4_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior4_4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior5_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior5_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior6_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior6_8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
bior6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BIORAD - Static variable in class gov.nih.mipav.model.file.FileUtility: Used by the Bio-Rad Pic format. extension: .pic && fileID(54L)==12345
biorthogonal - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
BiorthogonalWavelets(ModelImage, ModelImage, ModelImage, ModelImage, int, double, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
BiorthogonalWavelets.realImaginaryComparator - Class in gov.nih.mipav.model.algorithms.filters
BiorthogonalWavelets.realImaginaryItem - Class in gov.nih.mipav.model.algorithms.filters
birthField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
bisect(delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
bisection(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f: Returns Float which is null if no root is found; otherwise contains the value of the root.
BISECTION - gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType
BISNEW(int[], double, double, double, double[], double[], double[], double[], double[], double, int, double, double, double[], double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
bit - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
BIT - Static variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
BIT_BUF_SIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
BIT16 - Static variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
BIT8 - Static variable in class gov.nih.mipav.model.file.FileMedVision: DOCUMENT ME!
bitBuffer - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
bitBuffer - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
bitCount - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
bitCount - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
bitCount - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
bitCount - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
bitDepth - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
bitDepth - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The bit-depth of the input file (must be between 1 and 31)
BitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitInputStream
BitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitInputStream
BitInputStream(InputStream, boolean) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitInputStream
BitInputStream(InputStream, boolean) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitInputStream
BITMAP - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType: "BM" - Windows or OS/2 bitmap
BITMAP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader: "BM" - Windows or OS/2 bitmap
BitmapType(int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType
bitMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
bitMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
bitMask - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Useful bit mask for getting appropriate bits out of number.
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Bits per pixel.
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: Bits per pixel
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Bits per pixel.
bitpix - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
bitPointer - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
bitread_perm_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
bitread_working_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.bitread_working_state
BITREV(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
bitrevorder(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
bitrevorder(double[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
bitrv2(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv208(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv208neg(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv216(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv216neg(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bitrv2conj(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
bits - Variable in class gov.nih.mipav.model.file.FileDicomJPEG: Read in DHT header.
bits - Variable in class gov.nih.mipav.model.file.libjpeg.JHUFF_TBL
bits() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric: Determines the number of significant figures of machine precision to arrive at the size of the array the numbers must be stored in to get the accuracy of the solution.
BITS - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
BITS - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
BITS_IN_JSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
bits_left - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
bits_left - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Bits allocated per pixel.
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileRaw
bitsAllocated - Variable in class gov.nih.mipav.model.file.FileRawChunk
bitsAvail - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
bitsAvail - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
bitset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold: bitset for src image
BITSET - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill: DOCUMENT ME!
BitSetUtility() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
bitsLeft - Variable in class gov.nih.mipav.model.file.FileSVS
bitsLeft - Variable in class gov.nih.mipav.model.file.FileTiff
bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileBase: DOCUMENT ME!
bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileGESigna4X
bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
bitsPerSample - Variable in class gov.nih.mipav.model.file.FileSVS
bitsPerSample - Variable in class gov.nih.mipav.model.file.FileTiff
bitsStored - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Bits stored per pixel>
bitsStored - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
bitsStored - Variable in class gov.nih.mipav.model.file.FileRaw
bitsStored - Variable in class gov.nih.mipav.model.file.FileRawChunk
bitstate - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
bitsToGet - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
bitStreamEOF() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
BitSwapInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitSwapInputStream
BitSwapInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitSwapInputStream
bitSwapTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.BitSwapTable
bitSwapTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.BitSwapTable
bitwise_and(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_and(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_and_into(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_and_into(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or_into(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bitwise_or_into(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
bivariateCubicCoefficients(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
bivariateCubicCoefficients5By5(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
bKGD - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
bkvar - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
bkvarf - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
bl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bl0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bl0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
black - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
BLACK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
BLACK - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
BLACK - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
BlackBody - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Customized LUTs
blackEnd - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: gray scale value at which the black membership function ends the linear transition from 1 at the lowest gray scale value to 0
blackEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
blackImage - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: used to create the "selected" state of the buttons
blackImage - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
blackValue0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blackValue1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blackValue2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blackValue3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
blah - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: blank image
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Radio button selected if inserted slices are blank.
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
blank - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
BLANK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice: Blank slice type - the inserted slice is blank.
BLANK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume: Blank slice type - the inserted slice is blank.
BLANK - Variable in class gov.nih.mipav.model.file.FileFits: DOCUMENT ME!
BLANK - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: BLANK String
blank_continuous_wavelet() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
blank_discrete_wavelet(int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BLANK_OVERLAY - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: blank overlay string.
BLANK_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: DOCUMENT ME!
BLANK_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Blank volume type - the inserted volume is blank.
BlankCanvasFallback() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback: Creates a new ContourPlot.BlankCanvasFallback instance.
blankCursor - Static variable in class gov.nih.mipav.view.MipavUtil: Custom cursor: no cursor.
blankFramesSent - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
BlankJistHook - Class in gov.nih.mipav.view.dialogs: This class is an example class for tying existing plugins into the JIST interface.
BlankJistHook() - Constructor for class gov.nih.mipav.view.dialogs.BlankJistHook
blanklabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
BLEACH_ROI - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
bleachedROIShape - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
bleachedROIShape - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
bleachedROIShape - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
bleachKnotX - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
bleachKnotY - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
blend(int, int, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
blend(String, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase: Sets blending between imageA and imageB.
Blend - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect: Set surface blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect: Sets surface blend/transparency value for alph-blending in the shader.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject: Set object blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect: Sets the blend factor shader parameter between imageA and imageB.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect: Set the blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass: Sets the blend factor shader parameter between imageA and imageB.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic: Sets the blend factor shader parameter between imageA and imageB.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect: Set the blend value.
Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages: Sets the blend factor shader parameter between imageA and imageB.
blendBuffers(BufferedImage, BufferedImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Blend two BufferedImages, representing the left and right-eye views into a Red-Cyan stereo anaglyph.
blendColor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow: Blends two packed-integer colors (RGB) to create a Red-Cyan anaglyph.
blendColor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: blendColor: blends two colors in ARGB format from the BufferedImage class, using an alpha value of 0.5.
BlendColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blendComposite - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
blendParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
blendParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
blendSlider - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Opacity slider of texture 3D volume opacity changes.
blendSlider - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Opacity slider of texture 3D volume opacity changes.
BLGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
blind_deconvolution_example() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
BlindDeblur - Class in gov.nih.mipav.model.algorithms
BlindDeblur() - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur
BlindDeblur(ModelImage, ModelImage, ModelImage, String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur
BlindDeblur.Pair<T,U> - Class in gov.nih.mipav.model.algorithms
blist - Variable in class gov.nih.mipav.model.algorithms.Integration2: The right end points of the subintervals in the partition of the given integration range (lower, upper).
blist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: The right end points of the subintervals in the partition of the given integration range (lower, upper).
blk_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
blob - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.tliop
block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
block - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem
block - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
Block() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Block
Block(int[], int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
Block(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Block
block_data_list() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
block_density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
block_density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
block_diagonal_EtE_inverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_diagonal_EtE_inverse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_diagonal_FtF_inverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_diagonal_FtF_inverse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
block_id - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Cell
block_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
block_pair_container - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
block_positions_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
BLOCK_SENSITIVE_PEAK_SIGNAL_TO_NOISE_RATIO - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
block_size - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
block_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
block_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
block_structure() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
block_structure_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
BlockComparator() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.BlockComparator
blockCRC - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
BlockEvaluatePreparer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
blockHalf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
blockInt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
BlockJacobianWriter(CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
BlockJacobiPreconditioner(CeresSolver.BlockSparseMatrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
BlockJacobiPreconditionerTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
BlockJacobiPreconditionerTestLargeProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockJacobiPreconditionerTestSmallProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
blockList - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
BlockOrderingToScalarOrdering(Vector<Integer>, Vector<Integer>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
blockOverrun() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
BlockPermutationToScalarPermutation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessDenseMatrix(Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
BlockRandomAccessDiagonalMatrix(Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
BlockRandomAccessDiagonalMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix
BlockRandomAccessSparseMatrix(Vector<Integer>, Set<CeresSolver.Pair<Integer, Integer>>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
BlockRandomAccessSparseMatrixGetCell() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessSparseMatrixTestIntPairToLongOverflow() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockRandomAccessSparseMatrixTestLongToIntPair() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
blockRandomised - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
blockRandomised - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
blocks_in_MCU - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
blockSide - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
blockSide - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
blockSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
blockSize100k - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
blockSize100k - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
BlockSparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
BlockSparseMatrix(CeresSolver.CompressedRowBlockStructure) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
BlockSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixRandomMatrixOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
BlockSparseMatrixTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestLeftMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestLeftMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestRightMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestRightMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestSetZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestSetZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestSquaredColumnNormTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestSquaredColumnNormTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
BlockSparseMatrixTestToDenseMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
BlockSparseMatrixTestToDenseMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
blocksperrow - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
bloodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Flags to indicate which color channels to process.
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Flags indicate which color channel to process.
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep: Flags indicate which color channel to process.
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.model.file.FileWriteOptions: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: Border color, red, green, and blue components:
blue - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: DOCUMENT ME!
blue - Variable in class gov.nih.mipav.view.ViewJFrameBase: Blue channel value of the paint color.
BLUE - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function colors to be monochrome-blue.
BLUE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Blue channel.
BLUE - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity: Component tag indicator.
BLUE - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Component tag indicator.
BLUE - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase: The blue channel transfer function.
BLUE - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase: The blue channel transfer function.
BLUE_CHANNEL - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: BLUE CHANNEL String
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Blue channel.
BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Blue channel.
BLUE_WEIGHT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
blue1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
blue1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
blue1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
blue2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
blue2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
blue2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge: DOCUMENT ME!
BlueA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blueArray - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
blueArray - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BlueB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blueBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The blue sphere branch group that branches underneath the vasculatureBG, and represents the blue sphere branch group.
blueBlackLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
blueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
blueBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
blueBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: DOCUMENT ME!
blueButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
blueChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
blueChannelNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blueCheckbox - Variable in class gov.nih.mipav.view.components.JPanelColorChannels: DOCUMENT ME!
blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Checkbox to select blue image.
blueCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram: checkbox for turning on / off the blue component of the color look-up table.
blueCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Blue channel histogram check box A, B.
blueCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
blueCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Update Blue channel histogram check box A, B.
blueCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
blueGamma - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueLine - Variable in class gov.nih.mipav.model.structures.ModelLUT: Function that maps the blue function of the LUT.
blueLine - Variable in class gov.nih.mipav.model.structures.ModelRGB: Function that maps the blue function of the LUT.
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian: DOCUMENT ME!
blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc: DOCUMENT ME!
blueNorm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
blueOffset - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
BlueOnA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
BlueOnB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
blueRequested - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
blueRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

R, G, B channel control buttons.
blueRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
blueShiftColors - Variable in class gov.nih.mipav.view.ColorWheel: array of r,g,b values after blue shifting
blueShiftColors - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage: arry of r,g,b after blue shift *
blueSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The geometry group of the blue sphere.
blueSphereTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: blue sphere transform group that set up the translation.
blueText - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Weighting values for the red, green, and blue channels.
blueValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Weighting values for the red, green, and blue channels.
blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath
blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: DOCUMENT ME!
blueVector - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
blueWhiteLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
blur - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval: when true, blur the output
blur - Variable in class gov.nih.mipav.model.algorithms.MotionDetection
blur - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
blur(ModelImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel: Returns a blurred image of the input image.
BLUR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
BLUR_KERNEL - Static variable in class gov.nih.mipav.model.GaussianKernelFactory
BLUR_KERNEL_SIZE - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
BLUR_MIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: minimum value for blurring, at 1.0.
blur_x_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blur_y_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blur_z_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurAllRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for blurring the face / skull.
blurBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Blur image check box.
blurCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
blurFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: Blurs the face mask voxels The blurred face volume is copied into the ModelImage and displayed to the user.
blurFaceRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Button for blurring just the face.
blurFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: If true then the input image is blurred slightly.
blurFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: If true then the input image is blurred slightly.
blurFlag - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: If true then the input image is blurred slightly.
blurFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
blurI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
bluring - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer: Blur the final image to reduce voxel contrast.
blurR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
blurredImageSpectrum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Blurred input image.
blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Blurred input image.
blurredReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Blurred reference image.
blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Blurred reference image.
blurredSpectrumImags - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurredSpectrumReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution: DOCUMENT ME!
blurringDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
blurringDiameterText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
blurringFreq - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: user-selectable variables used in the FFT-blurring operation used as interim variables in starting the algorithm op.
blurringFreqText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: DOCUMENT ME!
blurryImage - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurryImageExtension - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurryImageFileDirectory - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurryImageFileName - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
blurSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface: The amount to blur to smooth surface.
blurSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes: The amount to blur to smooth surface.
blurSigma - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes: The amount to blur to smooth surface.
blurTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
blurValue - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: DOCUMENT ME!
bm - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
BM3D - Class in gov.nih.mipav.model.algorithms.filters
BM3D(ModelImage[], ModelImage, boolean, double, int, int, int, boolean, String, double, int, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.BM3D
bm3d_1st_step(double, ModelImage, int, int, int, int, double, double, boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
bm3d_2nd_step(double, ModelImage, ModelImage, int, int, int, int, double, boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
BM3D.indexValueComparator - Class in gov.nih.mipav.model.algorithms.filters
BM3D.indexValueItem - Class in gov.nih.mipav.model.algorithms.filters
bm3dAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
BM3Dwavedec2(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BM3Dwaverec2(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
BMatrixButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
bmatrixFileName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: B Matrix file name
bmatrixPath - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: bmatrix path
bMatrixVals - Variable in class gov.nih.mipav.model.file.DTIParameters
bMatrixVals - Variable in class gov.nih.mipav.model.file.FileBRUKER
bmatValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
BMCANP(double, double[], double[], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BMCAP1(double[], double[], double, int, int, int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[][], double[], double[][], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Bmp - gov.nih.mipav.model.file.MetadataExtractor.FileType
BMP - Static variable in class gov.nih.mipav.model.file.FileUtility: extension: .bmp.
BMP_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
BMP_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility: Bmp multifile
BMPHC1(int, double[], double[], double[], int, int, int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BmpHeaderDescriptor(MetadataExtractor.BmpHeaderDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
BmpHeaderDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
BMPHYC(int, double[], double[], double[], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
BmpMetadataReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpMetadataReader
BmpReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
BmpReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.BmpReaderTest
bmtxtFileBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: browse button
bmtxtFilePath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: This is the full path to the b matrix file
bmtxtFilePathTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: path to bmatrix file
bmtxtFileRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: b-matrix file option
bmv(int, double[][], double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
bn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bndind - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
bndptr - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
bNeedsRedraw - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Flag is set if one of the controls changed a value and the renderering needs to be redrawn when the mouse is released.
bodyPart - Variable in class gov.nih.mipav.model.file.FileInfoImageXML: DOCUMENT ME!
bogusBorderPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
bogusBorderPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to toggle borders around painted areas.
bogusShowPrivateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
boldBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: checkbox for bold style.
bolus - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
BOn - Variable in class gov.nih.mipav.model.structures.ModelRGB: Flag indicating whether the blue channel should be displayed.
BONE - Static variable in class gov.nih.mipav.model.structures.ModelLUT: Sets up the transfer function to be yellow-ish orange which is supposed to make bones look good.
BONE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Value which indicates a bone in the image.
BONE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Value which indicates a bone in the image.
boneBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the bone.
bonePresetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: DOCUMENT ME!
BOOLEAN - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type Boolean (1 bit per voxel).
BOOLEAN - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
BOOLEAN - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type Boolean (1 bit per voxel).
BOOLEAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
BOOLEAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
BOOLEAN_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type boolean.
booleanBox - Variable in class gov.nih.mipav.view.JPanelEditBoolean: DOCUMENT ME!
booleanGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
bootstrap() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
bootstrapWeighted() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapWithoutReplacement() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
bootstrapWithoutReplacementWeighted() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
border - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
BORDER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox: This code is a port of the MATLAB Pyramid Toolbox =========================== matlabPyrTools ============================ This package contains some MatLab tools for multi-scale image processing.
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
border_widthText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
BORDER0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
BORDER1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
BORDER2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
borderActiveImage - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
borderB - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
borderB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: false if column radio button selected.
borderB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderClearAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
borderClearAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
borderClearAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: DOCUMENT ME!
borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: Removes objects that touch (i.e., are connected to) the border
borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Removes objects that touch (i.e., are connected to) the border
borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D: Removes objects that touch (i.e., are connected to) the border
borderCol - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate: DOCUMENT ME!
borderCol - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: z slice.
borderColor - Variable in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
borderColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderColor - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: color for the line border surrounding each image in the light-box.
borderColor - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Color for the line border surrounding each image in the light-box.
BorderedButton - Class in gov.nih.mipav.view: This class was created for use in the JDialogMultiPaint class.
BorderedButton(String) - Constructor for class gov.nih.mipav.view.BorderedButton: Creates a new BorderedButton object.
borderG - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
borderImageSlider - Variable in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
borderOn - Variable in class gov.nih.mipav.view.BorderedButton: DOCUMENT ME!
borderPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
borderPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to toggle borders around painted areas.
borderR - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
borderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
borderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderSize - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: spacing for the line border surrounding each image in the light-box.
borderSize - Variable in class gov.nih.mipav.view.ViewJFrameLightBox: Spacing for the line border surrounding each image in the light-box.
bordersizeL - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
bordersizeText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox: DOCUMENT ME!
borderTitles - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
bot - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
BOTH - gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
BOTH - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: possible values for segmentation.
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation: This code is ported from MATLAB routines adjacency, affinity, afc, and irfc written by Joakim Lindblad References: 1.)
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: possible values for segmentation.
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: possible values for segmentation.
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: DOCUMENT ME!
BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
bothCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: wake up condition for awt, component and mouse.
bothCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: wake up condition for awt, component and mouse.
bothPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
botPaddingFactor - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
botPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
botPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
bottom - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
Bottom() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
BOTTOM - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
BOTTOM_EDGE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Bottom bounding edge of the canvas in world coordinates.
BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
bottomFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins: DOCUMENT ME!
bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
bottomLeftBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
bottomPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM: DOCUMENT ME!
bottomPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: DOCUMENT ME!
bottomPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: panels *
bottomPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
bottomPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: panels *
bottomRightBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
bottomSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
bottomSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
bottomsite - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
botX - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
botY - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
botZ - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
bound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2: DOCUMENT ME!
bound - Variable in class gov.nih.mipav.model.algorithms.Integration2: finite bound of integration range used in dqagie (has no meaning if interval is doubly-infinite).
bound - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: finite bound of integration range used in dqagie (has no meaning if interval is doubly-infinite).
bound_list(GenericPolygonClipper.lmt_node[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
boundA - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower bound of the exclusion
boundariesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
boundariesImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
boundariesImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
boundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
boundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
boundary() - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge
boundary() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
Boundary - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Boundary(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Boundary
BOUNDARY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: DOCUMENT ME!
BOUNDARY - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates only the boundary of the VOI should be displayed.
BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
BOUNDARY_CONDITION_DIRICHLET - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
BOUNDARY_CONDITION_PERIODIC - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
BOUNDARY_CONDITION_REFLECTING - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
boundary_mode_mirror - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will mirror the Img for out of bounds positions
boundary_mode_repeat_edge - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will repeat the edge of of an Img for out of bounds positions.
boundary_mode_repeat_image - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will repeat the Img for out of bounds positions.
boundary_mode_zero - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img: boundary mode that will return 0 for out of bounds positions.
boundaryDir - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
boundaryDir - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
boundaryDirBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual: DOCUMENT ME!
boundaryDirBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
BoundaryEmphasis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: contribution of the boundary emphasis slider and therefor the contribution of the 2nd derivative of the data.
boundaryEmphasisSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer: Boundary emphasis slider slider.
boundaryFinding(ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: Dynamic narrow band tracing algorithm.
boundaryImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt: boundary image.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Maximum iterations to generate new boundary.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Maximum number of snake iterations.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Maximum iterations to generate new boundary.
boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Maximum number of snake iterations.
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake: DOCUMENT ME!
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake: DOCUMENT ME!
boundB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper bound of the exclusion
boundingBox - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
boundingBox - Variable in class gov.nih.mipav.model.structures.VOI: If true the bounding box of the VOI should be displayed.
BoundingBoxColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
BoundingBoxEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render
BoundingBoxEffect(Vector3f, Vector3f, Vector3f, Vector3f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
boundingBoxField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
boundingBoxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Bounding box control panel.
boundingBoxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Bounding box control panel.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay: Check box for turning box on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check box for turning bounding boxes on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: Check box for turning box on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Check box for turning box on and off.
boundingCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check box for turning bounding boxes on and off.
boundingCheckA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static clipping plane check box.
boundingCheckStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static clipping plane check box.
boundingCheckStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Arbitrary and static clipping plane check box.
boundingCheckX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check box to turn the clipping plane frame on and off.
boundingCheckXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X,Y,Z inverse clipping plane check box.
boundingCheckY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check box to turn the clipping plane frame on and off.
boundingCheckYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X,Y,Z inverse clipping plane check box.
boundingCheckZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check box to turn the clipping plane frame on and off.
boundingCheckZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: X,Y,Z inverse clipping plane check box.
boundLB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower blue bound of the exclusion
boundLG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower green bound of the exclusion
boundLR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The lower red bound of the exclusion
bounds - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: integer scalar code for assessing the bounds bounds = 0 means an unconstrained problem bounds = 1 means the same lower bounds for all unknowns and the same upper bounds for all unknowns.
bounds - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: integer scalar code for assessing the bounds bounds = 0 means an unconstrained problem bounds = 1 means the same lower bounds for all unknowns and the same upper bounds for all unknowns.
bounds - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bounds - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: A BoundingSphere that contains the entire scene.
bounds - Variable in class gov.nih.mipav.view.ViewJComponentGraph: DOCUMENT ME!
bounds - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes: DOCUMENT ME!
bounds_lower - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bounds_type - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
bounds_upper - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
boundsConstrained() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
boundsForText(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas: Calls ContourPlot.CharacterAtlas.boundsForText(int, Font) with corresponding Ubuntu Mono font.
boundsForText(int, Font) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas: Calculates the bounding rectangle for a specific number of characters in the specified font.
boundUB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper blue bound of the exclusion
boundUG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper green bound of the exclusion
boundUR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: The upper red bound of the exclusion
box - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor: DOCUMENT ME!
box - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
box - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
box - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM: DOCUMENT ME!
box - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM: image volume bounding box.
box() - Constructor for class gov.nih.mipav.model.file.libjpeg.box
Box(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Called by CreateBox.
BOX_3D - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BOX_3D - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BOX_3D - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BOX_C0_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C0_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C0_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C1_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C1_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C1_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C2_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C2_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
BOX_C2_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
box_x - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < vector of all patches, corresponding to loc.
box_y - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < bounding box (x) for patch locations (top-left corner).
box_z - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor: < bounding box (y) for patch locations.
Box3 - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
Box3() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3(Box3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3(Point3, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3(Point3, Point3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
Box3DFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Box3DFunction
boxA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static and static inverse, arbitrary clipping plane check box.
BoxBODCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.BoxBODCostFunction
BoxBODData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
BoxBODObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
boxBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
boxCount2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxCount3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxCountAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount: DOCUMENT ME!
boxCountBoundary2D(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
boxDialog - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Dialog for recording and playing back mouse events.
boxdiv2(byte[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxdiv3(byte[][][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
boxes - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
boxfilter(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
boxFrame - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The outside box frame.
boxHeight - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
boxHeight - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Width and height of zoom box
boxIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: DOCUMENT ME!
boxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
boxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
boxSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: The frame around the AXIAL, CORONAL, SAGITTAL slices:
boxSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: The frame around the AXIAL, CORONAL, SAGITTAL slices:
boxSliceVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: The transformed boxSlices frames used to sample the volume data along diagonal slices:
boxSliceVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: The transformed boxSlices frames used to sample the volume data along diagonal slices:
boxSliceX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer: The frame around the x slice.
boxStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static and static inverse, arbitrary clipping plane check box.
boxStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Static and static inverse, arbitrary clipping plane check box.
BoxToIBox(Box3, Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
boxWidth - Variable in class gov.nih.mipav.view.BarMeter: DOCUMENT ME!
boxWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Width and height of zoom box
boxX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check boxes that turn the image plane on and off.
boxX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check boxes that turn the image plane on and off.
boxXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
boxY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check boxes that turn the image plane on and off.
boxY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check boxes that turn the image plane on and off.
boxYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Cropped image region.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: cropped image boundary info.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: cropped image boundary.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: bounding box for crop the image.
boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: Cropped image region.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: cropped image boundary info.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: cropped image boundary.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: bounding box for crop the image.
boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: bounding box for crop the image.
boxZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
boxZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Check boxes that turn the image plane on and off.
boxZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Check boxes that turn the image plane on and off.
boxZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Check boxes that turn the image plane and the sliders on and off.
bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t: pointer to the present position in the buffer
bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: pointer to the current position in the buffer
bpconv(double[], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
BPLIST_HEADER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
BplistReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
bpp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t: image depth in bits
bpp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t: image depth in bits
bps - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
bps - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
bps - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
bps - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
bpsconv(double[], int, double[], double[], int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
bpser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
bPtr - Variable in class gov.nih.mipav.model.file.FileDicomBase: Buffer pointer (aka file pointer).
BQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
br - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
br - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
br - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
bracketBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D: The initial bracket size for first iteration of ELSUNC.
bracketBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase: The initial bracket size for first iteration of Powell.
bracketBound - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Sets minimum and maximum limits as initial guess -+ unit_tolerance[i]*bracketBound.
bracketBound - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: The bracket size around the minimum in multiples of unit_tolerance in the first iteration of Powell's algorithm.
bracketBound - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
bracketBound - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
bracketBound_def - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
bracketBound_def - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
bracketBoundText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
bracketBoundText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: DOCUMENT ME!
BracketingPhase(CeresSolver.FunctionSample, double, CeresSolver.FunctionSample, CeresSolver.FunctionSample, boolean[], CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WolfeLineSearch
BRADLEY_FAYYAD_INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
BRADLEY_FAYYAD_INIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
BradleyInit - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
brainMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI: Denotes which pixels undergo SWI processing.
brainRegionSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The size of the region we have identified as the brain.
brainRegionThresholdRatio - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: The proportion of the total number of pixels in the volume that a region should be before we decide that it's probably the brain.
BRAINSURFACE_FLATTENER - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
brainsurfaceFlattenerRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Rendering the brainsurfaceFlattener objects.
brainsurfaceFlattenerRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Rendering the brainsurfaceFlattener objects.
branchButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: DOCUMENT ME!
branchingFactor - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState: Constructor.
BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState: Constructor.
BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState: Constructor.
bratio(double, double, double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
brcmp1(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
brcomp(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
breadth_first_search() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
breakDownArea - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
breakPoints - Variable in class gov.nih.mipav.model.algorithms.Integration2: Used in dqagpe This array must always be >= 2 in length.
breakPoints - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Used in dqagpe This array must always be >= 2 in length.
breakSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Defaults to the maximum buffer size in streaming.
breal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
breal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
brickFloatFacs - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickKeywordsString - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickLabsString - Variable in class gov.nih.mipav.model.file.FileAfni: Sub-brick names
brickLabsString - Variable in class gov.nih.mipav.model.file.FileInfoAfni: Name for each sub-brick
brickStatAux - Variable in class gov.nih.mipav.model.file.FileAfni: Each BLT is defined by a struct that contains two 3x3 matrices and four 3-vectors (2*3*3 + 4*3 = the 30 numbers).
brickStatAux - Variable in class gov.nih.mipav.model.file.FileInfoAfni: DOCUMENT ME!
brickStats - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brickTypeNumber - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
BriefReport() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
BriefReport() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
bright_on_dark - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
bright_on_dark - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
brightness - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.model.file.FileSVS
brightness - Variable in class gov.nih.mipav.model.file.FileTiff
brightness - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJComponentAnimate: offset ranging from -255 to 255 add to each scaled red, green, and blue
brightness - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
brightness - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
brightness() - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
brightness(int) - Method in class gov.nih.mipav.view.ViewJFilterAnimate: DOCUMENT ME!
brightnessBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution: buffer for storing the original maximum of the OpenCL buffer
brightnessContrastPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
brightnessLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: a pixel (no matter whether represented as a float or int), has a brightnessLevel, which is in the histogram as a value between 0 and totalBins.
brightnessSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness: DOCUMENT ME!
brightnessSlider - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser: DOCUMENT ME!
brightnessSlider - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
brightnessTable - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
brightOnDarkCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
brightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
brightPanel - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
brightSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
brightSlider - Variable in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
brightThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
brikDataType - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
brikFileName - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
bringToFront(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Checks whether or not the dialog exists; if it does, it brings the dialog to front.
bringToFront(String, Hashtable<String, JDialogEditor>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo: checks whether or not the dialog exists; if it does, it brings the dialog to front.
bringToFront(String, Hashtable<String, JDialogEditor>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML: checks whether or not the dialog exists; if it does, it brings the dialog to front.
BriskDescriptorExtractor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
BriskLayer(AlgorithmBRISK.BriskLayer, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
BriskLayer(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
BriskLongPair() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
BriskPatternPoint() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint
briskScaleSpace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
BriskShortPair() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.NESolve
BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.Lmmin
BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BROWN_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROWN_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BrownAndDennisFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownAndDennisFunction
BrownBadlyScaledFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownBadlyScaledFunction
BROWSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
BROWSE - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration: DOCUMENT ME!
browseButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
browseDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
browseOutputButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: DOCUMENT ME!
browser - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: File chooser for the user to select an existing file for attachment
brox_optic_flow(double[], double[], double[], double[], int, int, double, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Compute the optic flow with the Brox spatial method
brox_optic_flow(double[], double[], double[], double[], int, int, double, double, int, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow: Multiscale approach for computing the optical flow
brox_optic_flow(double[], double[], double[], int, int, int, double, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Compute the optic flow with the Brox temporal method
brox_optic_flow(double[], double[], double[], int, int, int, double, double, int, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow: Multiscale approach for computing the optical flow
broxAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
broxAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
BROYDEN_BANDED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROYDEN_BANDED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BROYDEN_TRIDIAGONAL - Variable in class gov.nih.mipav.model.algorithms.LsqFit
BROYDEN_TRIDIAGONAL - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
BRUKER - Static variable in class gov.nih.mipav.model.file.FileUtility: Bruker file format.
bruteForceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: CheckBox to turn brute-force registration on or off:.
bruteForceDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Dialog to set the brute-force registration parameters:.
Bs - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
bs_size - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
Bs2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
bsBuff - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
bsBuff - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
bsFinishedWithStream() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsFinishedWithStream() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsGetint() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsGetInt32() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsGetIntVS(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsGetUChar() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bside - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
bsLive - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
bsLive - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
BSPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bspline(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on black and white image data.
bSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength: DOCUMENT ME!
bSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
Bspline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
BSPLINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
bSpline2D(int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
bSpline2DC(int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
BSPLINE3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Cubic bspline interpolation.
BSPLINE3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Cubic bspline interpolation.
bSpline3D(int, int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
bSpline3DC(int, int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
BSPLINE4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: Quadratic bspline interpolation.
BSPLINE4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Quadratic bspline interpolation.
bspline4D(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on black and white image data in 4D image.
BSplineButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
bsplineC(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on color image data.
bsplineC4D(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform: Performs bspline interpolation on color image data in 4D image.
BSplineControlPointImageFilterTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BsplineCurve(Vector3f[], int, int, int, Vector<Vector3f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager: Compute Bspline segment
BSplineEpsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
BSplineEpsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
bSplineJet1D(byte, float, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
bSplineJetXY(int, float, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
bSplineJetXYZ(int, float, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
bSplineJetXYZ_double(int, float, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline: This method can also be used to calculate derivatives of the Bspline.
BSplineKernelFunction - Class in gov.nih.mipav.model.structures
BSplineKernelFunction() - Constructor for class gov.nih.mipav.model.structures.BSplineKernelFunction
BSplineKernelFunction(int) - Constructor for class gov.nih.mipav.model.structures.BSplineKernelFunction
BSplineKernelFunctionTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BSplineLattice2Df - Class in gov.nih.mipav.model.structures: This class manages a 2D lattice of control points given a discretized B-Spline basis for each axis.
BSplineLattice2Df(BSplineBasisDiscretef, BSplineBasisDiscretef) - Constructor for class gov.nih.mipav.model.structures.BSplineLattice2Df: Create 2D lattice of control points given a discretized B-Spline basis for each axis.
BSplineLattice3Df - Class in gov.nih.mipav.model.structures: This class manages a 3D lattice of control points given a discretized B-Spline basis for each axis.
BSplineLattice3Df(BSplineBasisDiscretef, BSplineBasisDiscretef, BSplineBasisDiscretef) - Constructor for class gov.nih.mipav.model.structures.BSplineLattice3Df: Create 3D lattice of control points given a discretized B-Spline basis for each axis.
BSplineRegistration2Df - Class in gov.nih.mipav.model.algorithms.registration: This class is used to register a 2D source image to a 2D target image.
BSplineRegistration2Df(ModelSimpleImage, ModelSimpleImage, BSplineBasisf, BSplineBasisf, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df: Create instance to be used for registration.
BSplineRegistration3Df - Class in gov.nih.mipav.model.algorithms.registration: This class is used to register a 3D source image to a 3D target image.
BSplineRegistration3Df(ModelSimpleImage, ModelSimpleImage, BSplineBasisf, BSplineBasisf, BSplineBasisf, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df: Create instance to be used for registration.
BSplineRegistrationBasef - Class in gov.nih.mipav.model.algorithms.registration: This is a common base class for all BSpline-based registrations.
BSplineRegistrationBasef(ModelSimpleImage, ModelSimpleImage, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef: Create instance to be used for registration.
BSplineScatteredDataPointSetToImageFilterTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BSplineScatteredDataPointSetToImageFilterTest2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
BSplineShapeFunctions - Variable in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
bsPutint(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsPutIntVS(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsPutUChar(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsR(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsSetStream(InputStream) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
bsSetStream(OutputStream) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bsStream - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
bsStream - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
bstate - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
bSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options: Boolean flag set to true to indicate whether the registration is performed to a subsampled target image.
bsW(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
bt - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: DOCUMENT ME!
BT - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
bTableSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: DOCUMENT ME!
btArrayList - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the array list of the texts on the buttons
BtB_method - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
btdtr(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
BTDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
bText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
btnAdd - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
btnGpuComp - Variable in class gov.nih.mipav.view.ViewUserInterface: The button indicating that MIPAV is set to run OpenCL -- GPU based algorithms
btnInvisible - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
btnMoveDown - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
btnMoveUp - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
btnMultiCore - Variable in class gov.nih.mipav.view.ViewUserInterface: The button indicating that MIPAV is set to run in a threaded environment
btnRemove - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
btol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
btrack - Variable in class gov.nih.mipav.model.algorithms.NESolve
btrunc(int[], boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
btrunc(int[], boolean, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bu - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bu - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
bu0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
bu0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
BucketSort(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
BucketSortCroiss(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
buf - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t: temporary place where each byte is read or written
buf - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
buf - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW: The line buffer.
buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice: The line buffer.
buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The line buffer.
buf_size - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
buff - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Buffer for original source image.
buffer - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: buffer - not included in original class
buffer - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
buffer - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
buffer - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
buffer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
buffer_full - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
buffer_gc - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
buffer_gc - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
buffer_index - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
buffer_index - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
buffer_layout - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Chunk
BUFFER_SIZE - Static variable in class gov.nih.mipav.model.file.FileDicomBase: The size of the buffer that contains the tags of the DICOM image.
buffer_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
buffer_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
buffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
buffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
BufferBase - Class in gov.nih.mipav.model.structures: This is an abstract buffer class that indicates the required methods of the sub-classes.
BufferBase() - Constructor for class gov.nih.mipav.model.structures.BufferBase
bufferBitSet - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferBoolean - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferBoolean() - Constructor for class gov.nih.mipav.model.structures.BufferBoolean: Default constructor.
BufferBoolean(int) - Constructor for class gov.nih.mipav.model.structures.BufferBoolean: Constructor that allocates memory.
BufferBoundsException(int, int, long) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
BufferBoundsException(String) - Constructor for exception gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
bufferBrain(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET: Appends the given brainMaskTemp by mmToPad in pixels in all directions.
bufferBW - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
bufferByte - Variable in class gov.nih.mipav.model.file.FileNIFTI: A byte array of the size of the NIFTI header + 4 extension bytes.
bufferByte - Variable in class gov.nih.mipav.model.file.FilePackBit: Buffer used to store image of type byte.
bufferByte - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
bufferByte - Variable in class gov.nih.mipav.model.file.FileSPM: DOCUMENT ME!
BufferByte - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferByte() - Constructor for class gov.nih.mipav.model.structures.BufferByte: Default constructor.
BufferByte(int) - Constructor for class gov.nih.mipav.model.structures.BufferByte: Constructor that allocates memory.
bufferByte2 - Variable in class gov.nih.mipav.model.file.FilePackBit: Second buffer used to store image of type byte.
bufferData - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
bufferDouble - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferDouble - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferDouble() - Constructor for class gov.nih.mipav.model.structures.BufferDouble: Default constructor.
BufferDouble(int) - Constructor for class gov.nih.mipav.model.structures.BufferDouble: Constructor that allocates memory.
buffered_image - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
BufferedImageFactory() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory
bufferFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
bufferFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Buffer factor, 1 usually, 4 for color images.
bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: 1 for black and white, 4 for color.
bufferFloat - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferFloat - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferFloat() - Constructor for class gov.nih.mipav.model.structures.BufferFloat: Default constructor.
BufferFloat(int) - Constructor for class gov.nih.mipav.model.structures.BufferFloat: Constructor that allocates memory.
bufferImageHeader - Variable in class gov.nih.mipav.model.file.FileAnalyze: Storage buffer for the header.
bufferInt - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferInt - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferInt() - Constructor for class gov.nih.mipav.model.structures.BufferInt: Default constructor.
BufferInt(int) - Constructor for class gov.nih.mipav.model.structures.BufferInt: Constructor that allocates memory.
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
bufferLong - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferLong - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferLong() - Constructor for class gov.nih.mipav.model.structures.BufferLong: Default constructor.
BufferLong(int) - Constructor for class gov.nih.mipav.model.structures.BufferLong: Constructor that allocates memory.
bufferReader - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
bufferShort - Variable in class gov.nih.mipav.model.file.FilePackBit: Buffer used to store image of type short or unsigned byte.
bufferShort - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
BufferShort - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferShort() - Constructor for class gov.nih.mipav.model.structures.BufferShort: Default constructor.
BufferShort(int) - Constructor for class gov.nih.mipav.model.structures.BufferShort: Constructor that allocates memory.
bufferSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: The total capacity of the buffer.
bufferSize - Variable in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileBFLOAT: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.model.file.FilePackBit: Size of buffer to be allocated.
bufferSize - Variable in class gov.nih.mipav.model.file.FileRawChunk: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
bufferSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
bufferToInt16(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Copies a 2 byte array into a 16 bit integer of proper endianess.
bufferToInt32(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Copies a 4 byte array into a 32 bit integer of proper endianess.
bufferType - Variable in class gov.nih.mipav.model.structures.ModelStorageBase: Type of image buffer (i.e.
bufferTypeStr - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Deprecated.
should use enums directly
BufferUByte - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferUByte() - Constructor for class gov.nih.mipav.model.structures.BufferUByte: Default constructor.
BufferUByte(int) - Constructor for class gov.nih.mipav.model.structures.BufferUByte: Constructor that allocates memory for the buffer.
BufferUInt - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferUInt() - Constructor for class gov.nih.mipav.model.structures.BufferUInt: Default constructor.
BufferUInt(int) - Constructor for class gov.nih.mipav.model.structures.BufferUInt: Constructor that allocates memory.
BufferUShort - Class in gov.nih.mipav.model.structures: This class extends the abstract BufferBase class.
BufferUShort() - Constructor for class gov.nih.mipav.model.structures.BufferUShort: Default constructor.
BufferUShort(int) - Constructor for class gov.nih.mipav.model.structures.BufferUShort: Constructor that allocates memory.
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: DOCUMENT ME!
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: DOCUMENT ME!
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: DOCUMENT ME!
bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: DOCUMENT ME!
bufferWrite - Variable in class gov.nih.mipav.model.file.FileAvi: DOCUMENT ME!
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: DOCUMENT ME!
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: maximum of the image buffer.
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: DOCUMENT ME!
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: DOCUMENT ME!
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: minimum of the image buffer.
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: DOCUMENT ME!
bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: DOCUMENT ME!
BUG_MAIL_URL - Static variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder: URL of the page we use to actually send the bug report email.
BugType(String) - Constructor for enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
bugTypeComboBox - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
build - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
build_3D_group(Vector<Vector<double[][]>>, int[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
build_bg_ycc_rgb_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
build_dog(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
build_gpyr(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
build_intersection_table(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
build_lmt(GenericPolygonClipper.lmt_node[], GenericPolygonClipper.sb_tree[], int[], VOIBaseVector, int, GenericPolygonClipper.gpc_op) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
build_rgb_y_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
build_sbt(int[], double[], GenericPolygonClipper.sb_tree) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
build_ycc_rgb_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
build3DMousePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the clipping control panel for the surface render.
build3DVOIToolBar(JToolBar, int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer: Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Build advanced settings dialog.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Build advanced settings dialog.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Build advanced settings dialog.
buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Build advanced settings dialog.
buildAdvancedDialog(int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions: Build advanced settings dialog.
buildAdvancedDialog(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Build advanced settings dialog.
BuildAllLevels(int, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Wrapper for automate model generation.
BuildAllLevels(int, String, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Driver method for model generation.
BuildAllLevels(int, Vector<String>, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Driver method for model generation.
buildAlphaSlider() - Method in class gov.nih.mipav.view.ViewControlsImage: Builds the slider used to control the alpha blending.
buildAnchorPane() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
buildAnimateToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Method to build the toolbar for the Animate frame.
buildAnimateToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Method to build the toolbar for the Animate frame.
buildAnnotationTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice: Creates the table that displays the annotation information.
buildAnnotationTable(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations: Creates the table that displays the annotation information.
buildAnonDirectoryDialog() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the anonymize directory dialog and displays it.
buildApplyButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the cancel button.
buildApplyButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the cancel button.
buildBasicLUTToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds a toolbar with just the basic lut buttons on it.
buildBasicTableModel() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
buildBlendPanel() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Build the blend slider control panel.
buildBlendPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase: Deprecated.

Build the blend slider control panel.
buildBlurringPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: part of the algorithm rests on blurring the original image.
buildBoneBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the bone ( yellow sphere ) branch group image scene graph.
buildBoundingBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Build the boudning box for X, Y, Z slices.
buildBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Build the boudning box for X, Y, Z slices.
buildBoundsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buildBrainsurfaceFlattener() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the Brainsurface Flattener panel:
buildBrightContPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Initializes GUI components and displays dialog.
buildBrightContPanel() - Method in class gov.nih.mipav.view.ViewImageDirectory: Initializes GUI components and displays dialog.
buildBrightnessContrastPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Initializes GUI components and displays dialog.
buildBrightnessContrastPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildBruteForceDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Builds the bruteForceDialog so the user can set the brute-force registration parameters:
buildBurnPackingPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Build the image scene graph structure.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView: Build the image scene graph structure.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView: Build the image scene graph structure.
buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView: Build the image scene graph structure.
buildBurnSceneGraph(float, float, Color3f, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Only used by the default burning point type to reset the image sence graph when the burning sphere radius and time changes.
buildBurnVisPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab containing the color, opac, picking, labels, etc for burns.
buildButton(CustomUIBuilder.UIParams) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Creates a JButton using a UIParams parameters
buildButton(String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar button.
buildButtonPanel() - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Creates an OK Button, which is relabeled "Save", an "Ignore" button, a "Cancel" and a "Help" button.
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds button panel consisting of OK, Cancel and Help buttons.
buildButtons(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation: creates the buttons, USE PREFERENCES, OKAY, CANCEL, and HELP.
buildButtons(GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the close button.
buildCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the camera snap shot panel.
buildCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the camera control panel for the surface render.
buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds the cancel button.
buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds the cancel button.
buildCancelButton(String, ActionListener) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
buildCenterPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildCheckBox(String, boolean) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new check box component.
buildCheckBox(String, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildCheckBox(String, boolean, ItemListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new check box component.
buildCheckBoxMenuItem(String, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Builds a JCheckBox with the given parameters and adds it to the Vector of menu items.
buildCheckBoxMenuItem(String, String, ActionListener, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: Static method for building JCheckBoxes with the given parameters.
buildCheckBoxPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
buildCirclePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
buildClamping(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: controls the entire creation of the clamping panel and all controls related to the display of the clamping parameter. places the clamping panel into the holder panel.
buildClipPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the clipping control panel for the surface render.
buildClipPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the clipping control panel for the surface render.
buildClipPlanesTree() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build cliping planes tree structure.
buildCloseButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the close button.
buildCloseButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the close button.
buildColocalizeToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Method to build the toolbar for the Animate frame.
buildColocalizeToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Method to build the toolbar for the Animate frame.
buildColorMap() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: Builds which cells to display as light blue and green.
buildColorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: part of the algorithm rests on finding the original image minus an estimation of the local mean.
buildColorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds the controls to set the color of the border the and color of the background.
buildColorTable(Vector<File>) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Attempted to find dependencies of used files after they were temporarily added to the class path (included unpacking jars)
buildColourPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: makes the panel to allow user selection of colour channels to filter. nothing editable when image not in ARGB or ARGB_USHORT or ARGB_UINTEGER or ARGB_FLOAT
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the ComboBox panel editing units of measure.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Builds a list of images to register to the template image.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Builds a list of images to register to the template image.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: buildComboBox.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Builds kernel combo box.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds a list of images to register to the template image.
buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: buildComboBox.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Builds a list of images.
buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: Builds a list of images.
buildComboBox(String, Object[]) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildComboBox(String, Object[], int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Builds a list of images to concatenate to image A.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Builds a list of images to operate on from the source image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Builds a list of images to operate on from the source image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Builds a list of images to operate on from the template image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Builds a list of images to operate on from the source image.
buildComboBoxImage() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer: Builds a list of images to operate on from the template image.
buildComboBoxImage(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Builds a list of images to register to the template image.
buildConnections() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Builds a list of cross-references, so that connections[i] contains all the verticies that are connected to vertex at i.
buildConnections() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface: Builds a list of cross-references, so that connections[i] contains all the vertices that are connected to vertex at i.
buildContentPane(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: Builds the content pane for the dialog, making the text fields and labels.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Creates the mouse control panels.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Build the light control panel.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Builds panel that has 3 sliders for the 3 planes shown, 3 checkboxes for showing the planes, 3 text boxes for the current values of the sliders, and a fourth slider and text box for the time dimension, if necessary.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Panel that has a slider for the image.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Build the light control panel.
buildControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Builds panel that has 3 sliders for the 3 planes shown, 3 checkboxes for showing the planes, 3 text boxes for the current values of the sliders, and a fourth slider and text box for the time dimension, if necessary.
buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Panel that sets the at rest frame number and the desired frames per second and reports the actual frames per second.
buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Panel that sets the at rest frame number and the desired frames per second and reports the actual frames per second.
buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: panel that sets the at rest frame number and the desired frames per second.
buildControlPanel(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: panel that sets the at rest frame number and the desired frames per second.
buildControlPanel(ModelImage, boolean) - Method in class gov.nih.mipav.view.JPanelHistogram: Builds the interface panel.
buildConventionalTabs() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1: This method builds the conventional tabs based on possibly pre-defined values.
buildConventionalTreT1Panel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildCubicBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Create the rotation control cubic box.
buildCubicBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Create the rotation control cubic box.
buildCubicBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Build the cubic branch under the objRootBG.
buildCubicBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Build the cubic branch under the objRootBG.
buildCursors() - Static method in class gov.nih.mipav.view.MipavUtil: DOCUMENT ME!
buildCurveTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves: Creates the table that displays the annotation information.
buildCustomBlendPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
buildDatePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the panel that designed for inputing study duration information.
buildDecimalField(String, double) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildDefaultFonts() - Static method in class gov.nih.mipav.view.MipavUtil: This should only be called once when MIPAV starts, and then if the user changes the font options through Program Options to rebuild the fonts used in GUI building.
buildDefaultShortcuts() - Static method in class gov.nih.mipav.view.Preferences: Builds the default shortcut hashtable (not user modifiable).
buildDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: setup the lightbox's control dialog.
buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Builds the dialog
buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Builds the dialog
buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Builds main dialog.
buildDICOMDIRFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the image tree dialog and displays it.
buildDICOMFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the image tree dialog and displays it.
buildDicomSortOptions() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection: Method for building DICOM tag/name sorting options.
buildDimensionNode(ModelImage, FileWriteOptions, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF: Creates the dimension node for files that are not Minc2.0
buildDimensionsPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildDimPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
buildDisabledTextButton(String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a text button for the toolbar.
buildDisplayPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the display control panel for the surface render.
buildDisplayPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the display control panel for the surface render.
buildDistancePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildDivisionComboBoxes() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Creates the combo-box that allows user to select the number of divisions in the image when building the histogram.
buildDTIColorLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildDTILoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
buildDTILoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildDTIParametersPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
buildEditDICOMFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the edit dicom tag interface.
buildEntryPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Build the entry point image scene graph structure.
buildEntryPointBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the entry point ( green sphere ) branch group image scene graph.
buildEPIPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildEValueLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildEVLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildExtentsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
buildFacesDescription(MetadataExtractor.Face[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
buildFALoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildFiberTrackingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildField(String, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int, boolean, ActionListener) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFileField(String, String, boolean, int, ActionListener) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildFilePanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildFilterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
buildFitFunctPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creates a panel to edit various fitted function features.
buildFittingPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buildFlythroughPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the flythru move control panel.
buildFlythruMovePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the flythru move control panel.
buildFlythruPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the flythru control panel.
buildFlyThruToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the fly through toolbar.
buildFontPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation: builds the panel that allows customization of font style/size/color.
BuildFromFiles(CAAMModel, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model from text based file
BuildFromFiles(CAAMModel, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model from text based file and AAM configuration file
BuildFromFiles(CAAMModel, String, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Diver method for model generation.
BuildFromFiles(CAAMModel, Vector<String>, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Diver method for model generation.
BuildFromSACF(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Wrapper to build the sequential model from the given aam configuration files.
BuildFromSACF(String, String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Driver method for model generation.
BuildFromSACF(String, Vector<String>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Diver method for model generation.
buildFunctionPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creates a panel where various features of the functions can be edited, such as showing the legend, and changing function names.
buildFuzzyCMeanPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildFuzzyPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
buildGaborPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildGeneralPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the "edit image name" panel.
buildGeneralToolBar(int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the general image toolbar, with buttons for saving the image, the histogram, etc., and a slider for a 3D image.
buildGeodesic() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the Geodesic control panel.
buildGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the Geodesic control panel.
buildGrayTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildGrid(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint: Builds the grid, with or without a pre-loaded BitSet (from an on-disk paintbrush)
buildGroupElementMap(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel: DOCUMENT ME!
buildGUI() - Method in class gov.nih.mipav.view.ViewSplashScreen: GUI initialization.
buildHaralickPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildHardThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod: No border
buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds the help button.
buildHelpButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds the help button.
buildHelpText() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the helping manual in the help panel - one of the three panels in the tabbed panel.
buildHIFIPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildHIFITabs() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildHistogram() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: make histogram uses the class-global vars kernel and histogram.
buildHistoLUTPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The histogram control panel of the lookup table.
buildHistoLUTPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The histogram control panel of the lookup table.
buildHostPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the host panel by calling methods to build the server and storage panels.
buildHTMLMenuItem(String, String, int, ActionListener, String, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
buildIconButton(String, String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build an icon button for the toolbar.
buildIconButton(Icon, String, String, ActionListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to build a icon button.
buildIgnoreButton() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Creates a button labelled "Ignore" and connects it to the action listener event list.
buildImage(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir: Opens preview of image in frame
buildImage(String, String) - Method in class gov.nih.mipav.view.ViewImageDirectory: DOCUMENT ME!
buildImageAlignToolBar() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
buildImageComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds a list of images.
buildImageDependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildImageDestObject(ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM: Shows the 2D histogram image.
buildImageDestObject(ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression: Shows the 2D histogram image.
buildImageDestPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the destination panel which consists of the directory textline, the browse button, and a sub-panel to provide the name of the randomized image.
buildImageEvalComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Builds a list of images.
buildImageEvalComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Builds a list of images.
buildImageIndependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildImageList() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
buildImageNode(ModelImage, FileWriteOptions, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF: Builds the image node (done for all filetypes when writing to MINC2.0 HDF5
buildImageObject(int, int, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimate: Shows the image.
buildImageObject(int, String) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip: For generating the display of 1 or 2 RGB images.
buildImageOriginPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
buildImagePanel() - Method in class gov.nih.mipav.view.ViewImageDirectory: Sets up the image panel and the table that will store basic header info, and returns the panel containing these.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Builds a list of images.
buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Builds a list of images.
buildImportDataPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildInfoNode(ModelImage, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF: builds the Info node for files that were not originally MINC 2.0 HDF5
buildIntegerField(String, int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildInterface() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
buildIRSPGRPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildIRSPGRPanelGEInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildIRSPGRPanelSiemensInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildItem(JMenuItem, Object) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
BuildJacobianLayout(CeresSolver.Program, int, Vector<int[]>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
buildKernelPanel(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the panel that allow user to select the kernel size and shape of the image when building the histogram.
buildKernelShape(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the comboBox that allows user to define the way the neighboring pixels are chosen for the histogram.
buildKernelShapeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Creates the combo-box that allows user to select the shape of the kernel (mask).
buildKernelShapeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Creates the combo-box that allows user to select the shape of the kernel (mask).
buildKernelSize(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the editable text comboBox that allows user to define the number of neighboring pixels used for the histogram. the number given may only be odd, as this is the total number of pixels chosen on both sides.
buildKernelSizeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Creates the combo-box that allows user to select the size of the kernel (mask).
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Build the panel.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Panel contains both the 3D image dir and saved 2D slices atlas dir.
buildLabel(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a label with the proper font and font color.
buildLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogServer: Build the label for the textField, try to standardize the label appearance in the GUI.
buildLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the label for the textField, try to standardize the label appearance in the GUI.
buildLabelPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The label panel of the x, y, z slider position.
buildLabelPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
buildLabelPanel() - Method in class gov.nih.mipav.view.ViewJFrameBase: The label panel of the x, y, z slider position.
buildLabels() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Convenience method created to simplify configureFrame().
buildLayout() - Method in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
buildLeftSubPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildLevelSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the level slider and places it in the slider panel.
buildLightPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the light control panel for the surface render.
buildLightPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the light control panel for the surface render.
buildList() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica: DOCUMENT ME!
buildListingPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the listing panel.
buildListPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Build the light list panel.
buildListPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM: Build the light list panel.
buildLoadDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Instantiates and shows the "Load label file" dialog, which is used to load a text file containing the names of the colored labels.
buildLoadDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
buildLoadPanel(ActionListener, JPanel, JLabel, JTextField, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buildLoadPanel(ActionListener, JPanel, JLabel, JTextField, String, String, JPanel) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
buildLocationPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildLogPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates a panel for the output log.
buildLogPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates a panel for the output log.
buildLUTPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Construct the panel LUT table viewing panel.
buildLUTs() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Convenience method created to simplify configureFrame().
buildLUTSelectionList(ActionListener) - Static method in class gov.nih.mipav.view.JPanelHistogram: Build the center part of the LUT toolbar.
buildLUTSelectionList(ActionListener) - Static method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.
buildLUTThresholdToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Creates the LUT thresholding toolbar.
buildLUTToolBarBottom() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the LUT toolbar, with buttons for quick-changing the LUT of the image.
buildLUTToolBarTop() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Build the top part of the LUT toolbar.
buildMagSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds the image magnification slider.
buildMagSliderLabels(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds labels used by the magnification slider.
buildMagToolBar(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the image toolbar for zooming
buildMainPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
buildMainPanel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
buildMaskLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
buildMatrixPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the panel usd in the tabbed pane "transform" as appropriate for the number of dimensions of the image.
buildMatrixPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds the matrixPanel.
buildMaximumSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Creates the combo-box that allows user to select the maximum size of the kernel (mask) when adaptive median filtering is selected.
buildMaxSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
buildMenu() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph: Builds the File menu for the HyperGraph interface.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Builds menu with load, save, and exit options.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Builds menus for the frame.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Builds menu.
buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Builds menus for the tri-planar view.
buildMenu() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenu() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds menus for the tri-planar view.
buildMenu() - Method in class gov.nih.mipav.view.ViewImageDirectory: Builds a small menu with "New directory", "Refresh directory", "Reset file filter", and "Open image" options.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: This method builds a menu which contains the options Save image as and Close Animate.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: This method builds a menu which contains the options Save image as and Close Animate.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: This method builds a menu which contains the option Close Colocalization.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: This method builds a menu which contains the option Close ColocalizationRegression.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Builds the jmenubar and adds two options.. disregard series #s and exit/close
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Function that builds the menu of various tools to be used in conjunction with the graph. ie: opening / saving files, changing gridlines, title / axis labels, etc.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Creates the needed menus.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Creates the needed menus.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: this method builds a menu which contains the options Save image as and Close Registration.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: this method builds a menu which contains the options Save image as and Close Registration.
buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds menus for the tri-planar view.
buildMenu() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds menus for the User Interface.
buildMenu(String, int, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: Static method for building a JMenu.
buildMenu(JFrame) - Method in class gov.nih.mipav.view.JFrameHistogram: This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
buildMenuBar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Builds a simple menubar for this frame (ViewJFrameLightBox).
buildMenuBar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Builds a simple menubar for this frame (ViewJFrameLightBox).
buildMenuEntries() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates the menu bar for the dialog.
buildMenuEntries() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Builds a small menu with "Clear log" and "Overwrite" options.
buildMenuItem(CustomUIBuilder.UIParams, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder: Build a menu item using a pre-made UIParams
buildMenuItem(CustomUIBuilder.UIParams, ActionListener, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: Creates a Menu Item using pre-packaged UIParams
buildMenuItem(String, String, int, ActionListener, String, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
buildMenuItem(String, String, int, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder: DOCUMENT ME!
buildMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
buildMessageFrame() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the message frame where user/program data can be displayed.
buildMessagePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Construct the Query retrieval message panel.
buildMinimumTickSpacing() - Method in class gov.nih.mipav.view.ViewJSlider: Sets values for minimum allowable tick spacing depending on size of GUI.
buildMinMaxImageStack(double[][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
buildMinMaxPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
buildMinSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the min slider and places it in the slider panel.
buildModeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildModel(Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Build the model with the given model image and VOIs vector along
buildModel(Vector<ModelImage>, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Build the AAM model from the given image and VOIs vector
BuildModel(CAAMModel, Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model from prostate images and VOIs
BuildModel(CAAMModel, Vector<ModelImage>, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Build the model in supervised way, with given prostate images and VOIs.
buildModifyGraphPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph: Creats a panel where various featuers of the graph can be edited, such as visbility of gridlines and minor tick marks, number of gridlines, background color, range, and labels for the title, x and y axiis.
buildMouseControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Creates the mouse control panels.
buildMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the mouse recorder panel.
buildMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the mouse control panel for the raycast render.
buildMousePanel(double) - Method in class gov.nih.mipav.view.JPanelHistogram: Builds the mouse panel.
buildMoviePanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: Build the mouse recorder button panel.
buildName(String) - Method in class gov.nih.mipav.view.ViewVOIVector: Builds a new voi name by incrementing the given name.
buildNamedTextButton(String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a text button for the toolbar.
buildNameSuggestionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates a name-suggestion panel.
buildNavigationModePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds the navigation mode control panel.
buildNewSourceTree(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates a new directory tree starting with directory as the root.
buildNoThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
buildNotResampleButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds the Cancel button.
buildOARButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: creates the planel which contains the OKAY and Cancel buttons. sets their sizes, colours and listeners.
buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor: creates a JPanel to hold the Okay and Cancel buttons. in a FlowLayout; presets all the listeners to the buttons, the fonts and text colour.
buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: creates the planel which contains the OKAY and Cancel buttons. sets their sizes, colours and listeners.
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Uses the super method to create a standard OK Button, but then resets the button text to read "Save" leaving the action command string as normal: "OK".
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Builds the OK button.
buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Builds the OK button.
buildOKButton(String, ActionListener) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds the OK button.
buildOKCancelButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds button panel consisting of OK, Cancel and Help buttons.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor: builds the panel which allows user to accept or decline using this algorithm.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor: builds the panel which allows user to accept or decline using this algorithm.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor: builds the panel which allows user to accept or decline using this algorithm.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders: DOCUMENT ME!
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the panel which consists of the OKAY button and the Cancel button.
buildOKCancelPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Builds panel for opacity control change on the triplanar X, Y, Z.
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the volume opacity control panel for the surface render.
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Builds panel for opacity control change on the triplanar X, Y, Z.
buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the volume opacity control panel for the surface render.
buildOptionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the random-button panel,which are two radio-buttons determining the naming actions for the output directories.
buildOptionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds the OptionPanel.
buildOptionsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: part of the algorithm rests on finding the original image minus an estimation of the local mean.
buildOrientPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the "orientation edit" panel.
buildOutputPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
buildOverlayStrings(FileInfoBase, String, String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Builds the overlay Strings from the tag's value.
buildPadButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds the Pad button for padding the blank images.
buildPage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Builds the panels for a page and adds them to the page.
buildPage() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Builds the panels for a page and adds them to the page.
buildPaintToolBar(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the paint toolbar
buildPaintToolBar(int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the paint toolbar, with buttons for widths of paint brushes, color chooser, etc.
buildPanel() - Method in class gov.nih.mipav.view.JPanelHistogram: Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay: builds each quadrant panel that has 4 buttons.
buildPanel(int, String, int, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM: Build x slider control panel.
buildPanelA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the arbitrary clipping slider control panel.
buildPanelA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelA() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelA(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelB() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelB(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelGM_A() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_A() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_A() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelGM_B() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_B() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Method that displays the histogram and controls to manipulate the opacity.
buildPanelGM_B() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method that displays the histogram and LUT and other controls to manipulate the LUT.
buildPanelS() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build static clipping slider control panel.
buildPanelSInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build static inverse clipping slider control panel.
buildPanelX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build x slider control panel.
buildPanelXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build x negative clipping slider control panel.
buildPanelY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the y clipping slider control panel.
buildPanelYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the y negative clipping slider control panel.
buildPanelZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the z clipping slider control panel.
buildPanelZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip: Build the z negative clipping slider control panel.
buildParameterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
buildParameterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
buildParSliceMap() - Method in class gov.nih.mipav.model.file.FilePARREC
buildParSliceMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildParVolMap() - Method in class gov.nih.mipav.model.file.FilePARREC
buildParVolMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildPasswordField() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to create a password field with the proper font and font color.
buildPasswordField(String, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildPlugInsMenu(ActionListener) - Method in class gov.nih.mipav.view.ViewUserInterface: Called by either userInterface (this) or by another actionlistener (ViewJFrameImage) to build the plugins menu bar.
buildPluginsTree() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin: Starts process to build exact copy of installed plugin structure as tree nodes.
buildPreprocessingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildPresetPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties: Builds the preset panel to display the preset images and buttons.
buildPresetPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM: Builds the preset panel to display the preset images and buttons.
buildPressedButtonBorder() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new border of the type used when a toggle button is depressed.
buildProbeModelPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab which allows the user to change the currently used probe model.
buildProbePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the adding surface control panel for the surface render.
buildProbePlacementPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab with controls / info used in probe placement before a burn.
buildProbes(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the three types of probe.
buildProbeSlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Setup the probe moving control panel that include x, y, z moving sliders.
buildProgressBar(String, String, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Constructs progress bar.
buildProgressBar(String, String, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Constructs progress bar.
buildPtInfoPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the patient information input panel.
BuildPyr(ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Builds an image pyramid (if its not cached beforehand).
buildQueryPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the DICOM Query panel, one of the three tabbed Panels in the DICOMQuery GUI.
buildQuickList() - Method in class gov.nih.mipav.view.ViewMenuBuilder: Builds the quicklist for the first time.
buildRadioButton(String, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildRadioButton(String, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the radio button for fast input of study date range.
buildRadioButton(String, boolean, ButtonGroup) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new radio button component.
buildRadioButtonMenuItem(String, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder
buildRadioButtonMenuItem(String, String, boolean, ButtonGroup) - Method in class gov.nih.mipav.view.ViewMenuBuilder
buildRAM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
buildRandButtonPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the random-button panel,which are two radio-buttons determining the naming actions for the output directories.
buildRandSelectionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: puts together the panel of recursive box and directory-randomization level radio button.
buildRawBuffer(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Fills the compData buffer from the vrBuffer.incomming buffers.
buildRayCastCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the camera control panel for the raycast render.
buildRayCastOptions() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the view control panel for the raycast render.
buildRayCastToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the raycast toolbar.
buildRegistrationToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: builds the first registration toolbar.
buildRegistrationToolBar(ActionListener, boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: builds the first registration toolbar.
buildRenderModePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds the render mode control panel.
buildResampleButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds the OK button.
buildResamplePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Builds the resample panel.
buildResampleStatusPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Builds the Edit button.
buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Builds the Edit button.
buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Builds the reset button.
buildResetButton() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Build the reset button.
buildResetDefaultsButton() - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: Builds the reset to defaults button.
BuildResidualLayout(CeresSolver.Program, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
buildResolutionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the panels which is edited in the tabbed pane "resolutions".
buildRGBToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Creates the RGB histogram toolbar.
buildRGBToolBar(ActionListener) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Method to build the toolbar for the RGB frame.
buildRowColPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: sets up the row and column panel.
buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
buildSaveDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Instantiates and shows the "Save label file" dialog, which is used to save a text file containing the names of the colored labels.
buildSaveDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
buildSaveGradBvalPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildScaleMax(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: define the possibilities of where the scale max comes from.
buildScriptToolBar(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the script toolbar, for quickly recording and playing back scripts.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Make a scroll frame and puts an image component into it.
buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Make a scroll frame and puts an image component into it.
buildScrollPane(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
buildScrollPane(JComponent) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Create a new scroll pane, containing a component.
buildScrollPane(JComponent, int, int) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Create a new scroll pane, containing a component.
buildScrollPanes() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Make a scroll frame and puts an image component into it.
buildScrollTextArea(Color) - Static method in class gov.nih.mipav.view.components.WidgetFactory
buildSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the Sculpturing control panel.
buildSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the Sculpturing control panel.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the visual display in which to list all selected directories in the directory tree.
buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the visual display in which to list all selected directories in the directory tree.
buildSelectOptionsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
buildSendPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the host panel by calling methods to build the server and storage panels.
buildSeqGroupElementMap(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildSequenceInfoPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildSequencesPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildServerPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the panel that contains the server table and four buttons.
buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCT: Builds the set button.
buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT: Builds the set button.
buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Builds the set button.
buildSetButton(GuiBuilder, String) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
buildSettingsPanel(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
buildShearWarpCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the camera control panel for the shearwarp render.
buildShearWarpOptions() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the view control panel for the shearwarp render.
buildShearWarpToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the shearwarp toolbar.
buildShininessPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Build the shinness control panel.
buildShortcutTable() - Static method in class gov.nih.mipav.view.Preferences: Builds a hashtable of actioncommands (keys) with associated keystrokes from the Preferences file.
buildSimplePanel() - Method in class gov.nih.mipav.view.JPanelHistogram
buildSimpleToolBar() - Method in class gov.nih.mipav.view.ViewControlsImage: Creates the main toolbar without any of the pre-made additional bars (no VOI etc) for use with addCustomToolBar() to add custom-built bars to the main bar
buildSimpleToolBar(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram
buildSlicePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the slices control panel for the surface render.
buildSlicePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the slices control panel for the surface render.
buildSlicePickPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Build the slice pickable panel
buildSlider(String, int, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
buildSlider(JPanel) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
buildSliderLabels(int) - Method in class gov.nih.mipav.view.ViewJSlider: Builds the slider labels for the slider.
buildSmartThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
buildSourceListingPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the panel holding the directory tree.
buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Creates the panel holding the directory tree.
buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Creates the panel holding the directory tree.
buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Creates the panel holding the directory tree.
buildSourcePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourcePanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildSourceTreeListing(boolean) - Method in class gov.nih.mipav.view.ViewImageDirectory: Creates the tree that holds the image files and returns the panel containing the tree.
buildSourceTreeListing(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Creates the panel holding the directory tree.
buildSPGRPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildSPGRPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildSpyr(Vector<double[][]>, Vector<int[]>, Vector<int[]>, Vector<double[][]>, double[][], int, String, int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
buildSpyrLevs(Vector<double[][]>, Vector<int[]>, double[][], int, double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
buildSquarePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
buildStartButton() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Builds the cancel button.
buildStartLocationsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the panels which is edited in the tabbed pane "Dataset Origin".
buildStaticPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow: DOCUMENT ME!
buildStatusPanel() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Panel that builds the status display panel.
buildStopButton() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: Builds the Stop button.
buildStoragePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Builds the panel that contains the storage table and four buttons.
buildSubsamplePanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildSurfaceBoxPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the options panel.
buildSurfacePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the adding surface control panel for the surface render.
buildSurfacePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Build the adding surface control panel for the surface render.
buildSurfaceTexturePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: Builds the Surface texture panel.
buildSurfaceViewToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The the top one volume view toolbar.
buildSurRenderToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the surface render toolbar.
buildSVMoptionsPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buildT2LoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
buildTabbedPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
buildTable() - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay: Build the table to be used in the dialog (dicom or image attributes).
buildTableModel() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
buildTablePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildTableScrollPane() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build a JScrollPane out of tagsTable
buildTagInfoPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildTagSelectorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
buildTagsModel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build a ViewTableModel and fill in DICOM tag info
buildTagsTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build a JTable out of a ViewTableModel
buildTagsTableListSelector() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build the tagsTable list selection method
buildTalairachPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo: Builds the Talairach Transform scrollpane with all talairach related data.
buildTargetListPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the target surface (tumor) control panel.
buildTargetPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
buildTDistLUT(int, double, ModelImage) - Static method in class gov.nih.mipav.model.structures.ModelLUT: Build LUT consisting of a student t-distribution at the specified level os significance for the given degrees of freedom.
buildTemplateList() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
buildTensorEstPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
buildTensorPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildText(int, String, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Attach some 3D text to a BranchGroup or TransformGroup.
buildTextArea(String, boolean) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new text area.
buildTextButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Helper method to build a text button for the toolbar.
buildTextButton(String, String, String, ActionListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to build a text button.
buildTextField(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Helper method to create a text field with the proper font and font color.
buildTextPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the panel that contains the query result table.
BuildTextureVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Samples all shapes in the training set and build the corresponding texture vectores.
BuildTextureVectorsFromImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Transform image to texture vector
buildThreshold(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Creates the txt-box that allows user to insert the bottom-end pixels to skip.
buildThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
buildThresholdPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Builds each threshold panel (red, green, and blue).
buildThresholdPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Builds each threshold panel (red, green, and blue).
buildTImageSliderLabels(int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the slider labels for the time slider.
buildTimeSlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices: Builds the time (4D) slider.
buildTimeSlider() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM: Builds the time (4D) slider.
buildTinvTable() - Static method in class gov.nih.mipav.model.algorithms.StatisticsTable: Builds the t-statistic table, first numerical row is list of significant values, subsequent rows are the t-statistic values for incremental degrees of freedom.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.MipavUtil: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.JPanelRendererBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
buildTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Method in class gov.nih.mipav.view.ViewImageDirectory: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Constructs the titled border for the panel.
buildTitledBorder(String, Color) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase: Builds a titled border with the given title, an etched border, and the proper font and color.
buildTitledBorder(String, Border) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample: Builds a titled border with the given title, an etched border, and the proper font and color.
buildToggleButton(CustomUIBuilder.UIParams, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToggleButton(String, int, String, String, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToggleButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToggleButton(String, String, String, String, ButtonGroup, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a toggle button for the toolbar.
buildToggleButton(String, String, String, String, ButtonGroup, JToolBar, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Helper method to build a toggle button for the toolbar.
buildToggleButton(String, String, String, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Create a new toolbar togglable button.
buildToolbar() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT: Build the toolbar, for now, only one save button.
buildToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Builds a simple toolbar for this frame (ViewJFrameLightBox).
buildToolbar() - Method in class gov.nih.mipav.view.ViewImageDirectory: Builds a toolbar with the same functionality as the menu.
buildToolbar() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser: Builds a toolbar with the same functionality as the menu.
buildToolbar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Builds a simple toolbar for this frame (ViewJFrameLightBox).
buildToolbar(boolean, JToolBar, ButtonGroup, JToggleButton, boolean) - Method in class gov.nih.mipav.view.ViewControlsImage: DOCUMENT ME!
buildToolbar(boolean, JToolBar, ButtonGroup, JToggleButton, boolean, boolean) - Method in class gov.nih.mipav.view.ViewControlsImage: Builds the toolbars.
buildToolBar() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Build the toolbar control.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: Builds the toolbar for the mouse recorder.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Build the toolbar.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: Builds the toolbar for the mouse recorder.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter: Builds the toolbar for the volume render frame.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Builds the toolbar for the volume render frame.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the probe toolbar control.
buildToolBar() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Build the toolbar.
buildToolBar() - Method in class gov.nih.mipav.view.ViewJFrameMessage: Builds the toolbar.
buildToolBar() - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph: Builds the needed toolbar.
buildToolBar(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram: Builds the toolbars.
buildToolBar2(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: builds the second registration toolbar.
buildToolBar2(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: builds the second registration toolbar.
buildToolbarBorder() - Static method in class gov.nih.mipav.view.components.WidgetFactory: Builds a new border of the type used by toolbars.
buildToolbarMenu(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
buildToolBarPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: A helper method to build the toolbar with various buttons to help in the editing of DICOM tags
buildToolbars() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Builds the toolbars for the tri-planar view.
buildToolbars() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the toolbars for the tri-planar view.
buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
buildTrainGroupPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buildTransformStatusPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
buildTransformTypePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildTreatmentPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
buildTreeDialog() - Method in class gov.nih.mipav.view.ViewUserInterface: Builds the image tree dialog and displays it.
buildTreT1HIFISpecificsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1HIFISpecificsPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1LongPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1LongPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1SpecificsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTreT1SpecificsPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
buildTriImage(ModelImage, ModelLUT, ModelRGB, ModelImage, ModelLUT, ModelRGB, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage: This method creates an image from the two ModelImage objects and ModelLUT objects passed as parameters.
buildTSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds the time (4th dimension) slider.
buildTSliderLabels(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: builds labels used by the time slider.
buildUndoTableModel(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
buildUnsharpPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: part of the algorithm rests on finding the original image minus an estimation of the local mean.
buildUserInterface() - Method in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
buildVasculatureBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: Build the vasculature ( blue sphere ) branch group image scene graph.
buildViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: Build the view control panel.
buildViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Build the view control panel for the surface render.
buildViewToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: The the top one volume view toolbar.
buildViewToolbar() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface: The the top one volume view toolbar.
buildVisuzalizationPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
buildVOIContourPane() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: DOCUMENT ME!
buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: DOCUMENT ME!
buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats: DOCUMENT ME!
buildVolumePositionPanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage: Builds the volume position panel, which is the panel that sits in the plug-in area of the 2x2 tri-planar layout.
buildVolumeTriPlanarVOIToolBar(int, int, boolean, boolean, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder: Builds the VOI toolbar, with buttons for creating various types of VOIs (elliptical, square, etc.), and for cut and paste operations.
BuildWarpTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Cache method, that caches triangle info.
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
buildWaveletPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
buildWindowLevelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the slider Panel.
buildWindowSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Builds the window slider and places it in the slider panel.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: Builds 4x4 transformation matrix from R and T where T=p2-R*p1.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: Builds 4x4 transformation matrix from R and T where T=p2-R*p1.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Builds 4x4 transformation matrix from R and T T=p2-R*p1.
buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Builds 4x4 transformation matrix from R and T T=p2-R*p1.
buildXLATdestPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: creates the destination panel which consists of the directory textline, the browse button for the translation key file.
bundle - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
BUNDLE_HEAD - gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
bundle_state() - Constructor for enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
BUNDLE_TAIL - gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
BundledPlugInInfo - Interface in gov.nih.mipav.plugins: This interface binds a PlugIn to a PlugInBundle.
BUNIT - Variable in class gov.nih.mipav.model.file.FileInfoFits
bup(double, double, double, double, int, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
BurnAttributes - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Class that holds the information about each surface; the BranchGroup which holds the surface subtree, the name of the surface in the dialog, the color of the surface, the shininess of the surface, the level of detail (for clod meshes), the number of triangles (changes with level of detail), the polygon mode (fill, line, or point), and a flag indicating if this is a clod mesh.
BurnAttributes(BranchGroup, String, Color4f, float, float, Point3f, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Constructs new attributes structure to hold information needed for displaying each burn.
BurnAttributes(BranchGroup, String, Color4f, float, float, Point3f, float, Point3f, boolean, boolean, boolean, BitSet, Point3f, Vector3f, Transform3D) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Constructs new attributes structure to hold information needed for displaying each surface.
burnBackFaceCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point back face culling check box.
burnBase - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burn base reference.
BurnBase - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: Title: BurnBase
BurnBase(SurfaceRender, JPanelProbe) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Constructor.
BurnBaseView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnBaseView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Constructor.
BurnBaseView.Edge - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: A representation of an edge for the vertex-edge-triangle table.
BurnBaseView.UnorderedSetInt - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: DOCUMENT ME!
burnBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn subtree, holds all the Shape3D objects that make up the surface.
burnBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe: The root branch group of the probe burning geometry shape.
burnClipCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point clipping check box.
burnColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning point surface color.
BurnCoolTipView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnCoolTipView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView: Constructor.
BurnHeatView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnHeatView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView: Constructor.
burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Current burning point index.
burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Current burning point index.
burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Current burning point index being hightlighted.
burningBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning point branch group array, used to switch between different buring point.
burningPtTransVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point coordinate vector in world coordinate system.
burningTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burning time.
burnList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burn list that hold the burning point names.
burnMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: BitSet burning sphere or ellposoid mask.
burnPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: Burn center coordinate.
BurnRegularView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview: The default probe burning type view.
BurnRegularView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView: Constructor.
burnRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: The root branch group of the burning point.
burnRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: The root branch group the default burning point.
burns - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation: List of burn attributes.
burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Burning type flag, default to the default burning point type.
burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Burning type.
burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Burning type, default, regular, heat, etc.
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: DOCUMENT ME!
butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
butterworthOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener: Button reference.
button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener: DOCUMENT ME!
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener: Color Button
button - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
button_change_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_change_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_clear_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_clear_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_load_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_load_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_run_clicked(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_run_clicked(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
button_save_clicked(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
button_save_clicked(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
BUTTON0 - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
BUTTON1 - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
buttonArray - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
buttonAxial - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonCoronal - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Choose button for each VOI and ply file.
buttonDilate - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonEnergyInput - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
buttonErode - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonExportToMask - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonExportToVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonFile - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify
buttonFillBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonFillBackgrounds - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonfine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
buttonGrid - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: Array of toggle buttons used to create the grid
buttonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
buttonGroup - Variable in class gov.nih.mipav.view.ViewMenuBuilder
buttonGrowRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonImportFromMask - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonImportFromVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonInputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
buttonInputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
buttonMatchFile - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
buttonMpFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
buttonnormal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
buttonOutputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
buttonOutputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
buttonOutputFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation: Panel to contain the okay/cancel/help buttons.
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Button panel to hold the OK button, Cancel button, and Help button.
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction: Button panel to hold the OK button, Cancel button, and Help button.
buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogText: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction: Panel to contain the okay/cancel/help buttons.
buttonPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode: Panel to contain the okay/cancel/help buttons.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera: Button panel.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox: DOCUMENT ME!
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast: Button Panel.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp: Button Panel.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Button panel to hold the OK button, Cancel button, and Help button.
buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI: Button panel to hold the OK button, Cancel button, and Help button.
buttonPly - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonPly - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI: Choose button for each VOI and ply file.
buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
buttonPress - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior: DOCUMENT ME!
buttonRevert - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonRmObject - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonRmObjects - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonSagittal - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs: Choose button for each VOI and ply file.
buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
buttonShortkeys - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: DOCUMENT ME!
buttonShortkeys - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
buttonsIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
buttonSize - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint: Make sure the button size is always this dimension
buttonSVMModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
buttonTextArrayList - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: this is the array list of texts for the mask number buttons.
buttonTimesFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
buttonTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
buttonVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
buttonVOIFile2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: DOCUMENT ME!
buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: DOCUMENT ME!
buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
bVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
bvalGradAppButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
bvalGradFileLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData: DOCUMENT ME!
bValue - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
bValueArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
bValueIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
bValuePos - Variable in class gov.nih.mipav.model.file.FilePARREC: bFactorIndex
bvalues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
bValues - Variable in class gov.nih.mipav.model.file.DTIParameters
bValues - Variable in class gov.nih.mipav.model.file.FileBRUKER
bValues - Variable in class gov.nih.mipav.model.file.FileImageXML
bValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
bValuesArrayList - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile: this is an array of b-values that for each volume
BValuesPerDirection - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
bValueTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor: textfields *
bw - Variable in class gov.nih.mipav.model.file.FileXML: Buffered writer for writing to XML file
bW - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
bwAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
bwImageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
bwlabel4(int[][]) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
bwSegmentedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
bwSegmentedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
bx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
by - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
by2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
by4Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
by8Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample: DOCUMENT ME!
byArea - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
byContour - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by VOI contour.
byContour - Variable in class gov.nih.mipav.view.JPanelStatisticsList: true if by contour or by slice and contour and show Totals is not selected
byContourSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by VOI contour.
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMean: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMode: DOCUMENT ME!
bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by VOI slice.
BYTE - gov.nih.mipav.model.file.FileSVS.Type: 8 bit unsigned
BYTE - gov.nih.mipav.model.file.FileTiff.Type: 8 bit unsigned
BYTE - gov.nih.mipav.model.structures.ModelStorageBase.DataType: Data buffer is of type signed byte (8 bits per voxel).
BYTE - Static variable in class gov.nih.mipav.model.file.FileLSM: TIFF Types.
BYTE - Static variable in class gov.nih.mipav.model.file.FileSTK: TIFF Types.
BYTE - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate that the data buffer is of type signed byte (8 bits per voxel).
byte_order - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
BYTE_STRING - gov.nih.mipav.model.file.FileDicomTagInfo.StringType: A string with VR "OB" is stored in the tag's value.
BYTE_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase: Used to indicate, as a String, that the data buffer is of type byte.
byte2D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byte2DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byte3D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byte3DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
byteArray1 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: One byte array allocated once to speed process and reduced the need to reallocate memory.
byteArray2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Two byte array allocated once to speed process and reduced the need to reallocate memory.
byteArray4 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms: Four byte array allocated once to speed process and reduced the need to reallocate memory.
ByteArrayReader(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
ByteArrayReader(byte[], int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
ByteArrayReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteArrayReaderTest
byteBuffer - Variable in class gov.nih.mipav.model.file.FileBioRad: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileDicomBase: One byte array used to read/write in data so that one doesn't't need to be allocated with each read/write.
byteBuffer - Variable in class gov.nih.mipav.model.file.FileGESigna4X: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
byteBuffer - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ByteBuffer(int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer: Allocates the byte buffer of the given size.
byteBuffer2 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Two byte array used to read/write in data so that one doesn't't need to be allocated with each read/write.
byteBuffer4 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Four byte array used to read/write in data so that one doesn't need to be allocated with each read/write.
byteBuffer8 - Variable in class gov.nih.mipav.model.file.FileDicomBase: Eight byte array used to read/write in data so that they don't need to be allocated with each read/write.
ByteConvert() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteConvert
ByteConvertTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteConvertTest
byteCount - Variable in class gov.nih.mipav.model.file.FileLSM.Index: DOCUMENT ME!
byteCount - Variable in class gov.nih.mipav.model.file.FileSTK.Index: DOCUMENT ME!
byteCount - Variable in class gov.nih.mipav.model.file.FileSVS.Index: DOCUMENT ME!
byteCount - Variable in class gov.nih.mipav.model.file.FileTiff.Index: DOCUMENT ME!
byteDoubleBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt: byte array for double *
byteDoubleBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for double *
byteFloatBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: byte array for float *
byteFloatBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for float *
byteFormat - Variable in class gov.nih.mipav.model.file.FileBioRad: if 1 data is UBYTE, otherwise data is SHORT.
byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering: byte array for int *
byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: byte array for int *
byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt: byte array for int *
byteIntBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for int *
byteLongBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: byte array for long *
byteLongBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt: byte array for long *
byteLongBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for long *
byteOrder - Variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
bytePointer - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder: DOCUMENT ME!
bytes_in_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
bytes_in_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
bytes_left - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
bytes_left - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
bytes_read - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
bytes_used - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
bytes_used - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
byteShortBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: byte array for short *
byteShortBuffer - Variable in class gov.nih.mipav.model.file.FileBase: byte array for short *
bytesOut - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoDicom: Number of bytes per pixel.
bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInterfile: DOCUMENT ME!
bytesPerPixelIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
bytesPerRow - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
bytesPerValue - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
bytesToDouble(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to double
bytesToFloat(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to float
bytesToInt(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to int
bytesToShort(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase: Converts from bytes to short
bytesV - Variable in class gov.nih.mipav.model.file.FileDicom
ByteTrie() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie
ByteTrieNode() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie.ByteTrieNode
ByteTrieTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteTrieTest
ByteUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteUtil
ByteUtilTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteUtilTest
byteValue - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
byteValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational: Returns the value of the specified number as a byte.
byTotalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions: A radio button to select calculation by total VOI.
bz - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
bz2in - Variable in class gov.nih.mipav.model.file.FileNIFTI
BZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
BZip2Constants - Interface in gov.nih.mipav.model.file: Base class for both the compress and decompress classes.

C

c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow: DOCUMENT ME!
c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
c - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
c - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
c - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
c - Variable in class gov.nih.mipav.model.algorithms.curev
c - Variable in class gov.nih.mipav.model.algorithms.curfit
c - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
c - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric: Input argument
c - Variable in class gov.nih.mipav.model.algorithms.Integration2: Parameter in the weight function, c !
c - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: Parameter in the weight function, c !
c - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
c - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
c - Variable in class gov.nih.mipav.model.algorithms.splev
c - Variable in class gov.nih.mipav.model.algorithms.sproot
c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t: temporary buffer where bits are coded or decoded
c - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
c - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW: The index of the component from where to get the data
c - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
c - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: model parameters.
c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
C - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline: DOCUMENT ME!
C - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
C - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex: < transition matrix
C - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
C() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: Returns the corresponding model parameters.
c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
c_a(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
C_AAMBUILDER - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
C_AAMBUILDER() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.C_AAMBUILDER
C_AAMMODEL - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
C_AAMMODEL() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.C_AAMMODEL
c_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
C_MAX_BLOCKS_IN_MCU - Static variable in class gov.nih.mipav.model.file.libjpeg
c_next(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
c_prev(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
c_s(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
C_SVC - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
C_SVC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
c0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
c0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
C0 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: coefficents for DAUB4 wavelet filter.
C0_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
C0_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
c0max - Variable in class gov.nih.mipav.model.file.libjpeg.box
c0min - Variable in class gov.nih.mipav.model.file.libjpeg.box
c1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE: Reference: Adaptive and integrated neighborhood-dependent approach for nonlinear enhancement of color images by Li Tao and Vijayan K.
c1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
c1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
c1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
c1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
c1 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
C1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
C1 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: private double BIG = 3.0E137; // 3.0E37.
C1 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C1_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
C1_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
c12 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C1CHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
C1d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c1Factor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
c1max - Variable in class gov.nih.mipav.model.file.libjpeg.box
c1min - Variable in class gov.nih.mipav.model.file.libjpeg.box
c2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
c2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
c2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
c2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
c2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
c2 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE: DOCUMENT ME!
C2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
C2 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C2 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C2_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
C2_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
c20 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C2CHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
C2d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c2max - Variable in class gov.nih.mipav.model.file.libjpeg.box
c2min - Variable in class gov.nih.mipav.model.file.libjpeg.box
c2x - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c2y - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c2z - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
c3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
c3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
c3 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
C3 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C3 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
C3d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c3Factor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
c3x - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c3y - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c3z - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
c4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
c4 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: coefficients for the PWT filter.
C4 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C4 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C4C6 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4C6 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C4d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
C4Q - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4Q - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C4R - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C4R - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
c5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
C5d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
C6 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
C6 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
C6d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
c7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
ca - Variable in class gov.nih.mipav.model.file.FileMGH: DOCUMENT ME!
ca_bckpbCrt - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_ckpntData - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_firstCVodeBcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_firstCVodeFcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMfree - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMget - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMinterpSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMmalloc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMmallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMnewData - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMstore - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMstoreSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_IMtype - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_nbckpbs - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_nckpnts - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_np - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_nsteps - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_T - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tfinal - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tinitial - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tstopCVodeF - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_tstopCVodeFcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_Y - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_YS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_yStmp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ca_ytmp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
CAAMAnalyzeSynthesize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMAnalyzeSynthesize(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize: Constructor
CAAMAnalyzeSynthesizeSoftware - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMAnalyzeSynthesizeSoftware(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware: Constructor
CAAMAnalyzeSynthesizeSoftware.sWarpEntry - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
CAAMBuilder - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMBuilder() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Constructor.
CAAMConsole - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsole(int, String[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole: Console interface to pass the augments to varies modes
CAAMConsoleMode - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleMode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: constructor
CAAMConsoleMode(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode: Constructor
CAAMConsoleModeB - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeB() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Constructor
CAAMConsoleModeB(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB: Constructor
CAAMConsoleModeCM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeCM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeCM: Constructor
CAAMConsoleModeD - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeD(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeD: Constructor, Debug/Test console mode, not used.
CAAMConsoleModeE - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeE() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Constructor.
CAAMConsoleModeE(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Constructor.
CAAMConsoleModeLOO - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeLOO(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeLOO: Constructor
CAAMConsoleModeM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeM: Constructor.
CAAMConsoleModeP - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeP(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeP: Constructor
CAAMConsoleModeR - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeR(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeR: Constructor.
CAAMConsoleModeREG - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeREG(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeREG: Constructor.
CAAMConsoleModeS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeS(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeS: Constructor.
CAAMConsoleModeSM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeSM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeSM: Constructor.
CAAMConsoleModeT - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeT(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeT: Constructor.
CAAMConsoleModeU - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeU(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeU: Constructor.
CAAMConsoleModeW - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMConsoleModeW(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeW: Constructor.
CAAMDeform - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMDeform() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
CAAMDeformPCA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMDeformPCA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
CAAMDelaunay - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMDelaunay() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDelaunay: constructor
CAAMEvalRes - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMEvalRes(CAAMShape, CAAMShape, double, CAAMOptRes) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes: Constructor Compute the evaluation optimization results.
CAAMEvaluationResults - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMEvaluationResults() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults
CAAMInitCandidates(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates: Allocates a pool with room for 'n' candidates.
CAAMInitEntry(double, CAAMShape, CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry: Constructor
CAAMInitialize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMInitialize() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize: Constructor.
CAAMInitialize(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize: Copy constructor.
CAAMInitializeStegmann - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMInitializeStegmann(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: Constructor.
CAAMInitializeStegmann(CAAMModel, ModelImage, ModelImage, CAAMShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann: AAM initialization from given aam model, target imge, and sample image and VOI
CAAMInitializeStegmann.CAAMInitCandidates - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: Initialization candidate containiner.
CAAMInitializeStegmann.CAAMInitEntry - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: Container for initialization results.
CAAMLinearReg - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMLinearReg() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg: constructor
CAAMLowerBounds - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMLowerBounds() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Constructor.
CAAMLowerBounds(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds: Constructor
CAAMMathUtil - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMMathUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil
CAAMMesh - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMMesh() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Constructor.
CAAMMesh(CAAMMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh: Copy constructor.
CAAMModel - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMModel() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Constructor.
CAAMModel(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel: Copy constructor.
CAAMModelMS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMModelMS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS: Default multi-scale constructor.
CAAMModelSeq - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMModelSeq() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq: Default multi-scale constructor.
CAAMObject - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMObject() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMObject
CAAMOptimize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMOptimize(CAAMModel, CAAMShape, ModelSimpleImage, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize: Constructor for the AAM optimizer.
CAAMOptRes - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMOptRes() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: Constructor
CAAMOptRes(double, int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes: Constructor
CAAMOptState - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMOptState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Constructor
CAAMOptState(double, CAAMShape, CDVector, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState: Constructor
CAAMPoint - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMPoint() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Constructor
CAAMPoint(double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint: Constructor
CAAMPointInfo - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMPointInfo() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Constructor
CAAMPointInfo(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo: Constructor
CAAMPropsReader - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMPropsReader(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Constructor.
CAAMReferenceFrame - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMReferenceFrame() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Constructor.
CAAMReferenceFrame(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Copy constructor.
CAAMReferenceFrame.sScanLinePart - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: defines a sub-part of a horizontal line in an image
CAAMShape - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMShape() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Default constructor.
CAAMShape(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Constructs a shape with 'nbPoints' points.
CAAMShape(CAAMShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Copy contructor.
CAAMShape(CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Constructs a shape from a vector.
CAAMShapeCollection - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMShapeCollection() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection: Constructor.
CAAMTest - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest: Constructor.
CAAMTFIdentity - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTFIdentity() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity: Constructor
CAAMTFLookUp - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTFLookUp() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp: Constructor.
CAAMTFUniformStretch - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTFUniformStretch() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch: Constructor.
CAAMTransferFunction - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTransferFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction: Contructor
CAAMTriangle - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMTriangle() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Constructor
CAAMTriangle(int, int, int, Vector<CAAMPoint>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Constructor
CAAMUtil - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
CAAMVisualizer - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMVisualizer(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer: Constructor.
CAAMWarp - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMWarp() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp: Constructor
CAAMWarpLinear - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CAAMWarpLinear(boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear: Constructor.
cache - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q
cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q
cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
Cache(int, long) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Cache
Cache(int, long) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
cache_detMt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: Kalman gain matrices [n x m x tau].
cache_dt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: inverse covariance matrix [m x m x tau].
cache_invMt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter: < cache for an instantiated Kalman filter: determinant term [1 x tau].
cache_Kt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
cache_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
cache_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
CACHE_SIZE - Variable in class gov.nih.mipav.model.algorithms.Fastfit
Cache.head_t - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
CACHED_MAX_DEBUG_LINES - Static variable in class gov.nih.mipav.view.Preferences: Constant used to identify the maximum number of lines in the debugging panel.
cachedClass - Variable in class gov.nih.mipav.plugins.JarClassLoader
cachedTab - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Cached value of selected tab
cacheRaster(WritableRaster) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
cadvise() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
caField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams: textfields
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Range of calibration values.
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: The cal_min and cal_max fields (if nonzero) are used for mapping (possibly scaled) dataset values to display colors: - Minimum display intensity (black) corresponds to dataset value cal_min. - Maximum display intensity (white) corresponds to dataset value cal_max. - Dataset values below cal_min should display as black also, and values above cal_max as white. - Colors "black" and "white", of course, may refer to any scalar display scheme (e.g., a color lookup table specified via aux_file). - cal_min and cal_max only make sense when applied to scalar-valued datasets (i.e., dim[0] < 5 or dim[5] = 1).
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Range of calibration values.
cal_max - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Values of 0.0 for both fields imply that no calibration min and max values are used !
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI: values of 0.0 for both fields imply that no calibration min and max values are used !
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText: Values of 0.0 for both fields imply that no calibration min and max values are used !
cal_min - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
cal_units - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze: Specifies the name of the calibration unit.
cal_units - Variable in class gov.nih.mipav.model.file.FileInfoSPM: DOCUMENT ME!
calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors: Prepares the data and runs the algorithm for a 2D or 3D image.
calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal: Find the midsagittal line and transform the source image to align it along that line vertically.
calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon: Prepares the data and runs the algorithm for a 2D or 3D image.
calc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian: Starts the Gaussian calculation.
calc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian: Starts the Gaussian calculation.
calc(ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Performs a AlgorithmImageCalculator calculation on the two input images.
calc_binomials(int, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_binomials(int, int, DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_clustering_acc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
Calc_dD() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Cache function.
calc_entropy(int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_nls_nmf(Matrix, Matrix, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_nmi(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_powers(double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_powers(QuarticEquation.complex_t, int, QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_powers(QuarticEquationEP.complex_t, int, QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_powers(DoubleDouble, int, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_purity(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
calc_shifted_coefs(double, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_shifted_coefs(QuarticEquation.complex_t, int, QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
calc_shifted_coefs(QuarticEquationEP.complex_t, int, QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_shifted_coefs(DoubleDouble, int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
calc_symmetry - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares the data and runs the algorithm for a 3D image.
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares the data and runs the algorithm for a 3D image on a slice by slice basis.
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: calc25D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: calc25D - calculates the diffused image and creates the new VOI for the original image.
calc25D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: calc2D - calculates the diffused image and creates the new VOI for the original image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: calc2D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: calc2D - calculates the diffused image and creates the new VOI for the original image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Prepares the data and runs the algorithm for a 2D image.
calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Calculates the watershed intialized by the VOI regions.
calc2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
calc2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
calc2DBWStats() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calc2DColorStats() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calc34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
Calc34D(VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
calc35D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: calc3D - calculates the diffused image and creates the new VOI for the original image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: calc3D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: calc3D - calculates the diffused image and creates the new VOI for the original image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Prepares the data and runs the algorithm for a 3D image.
calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed: Calculates the watershed intialized by the VOI regions.
calc3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
calc3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
calcAsymmetryIndex(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
calcAvgIntenStdDev() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: computes the avg intensity got 2d and 3d greyscale and color images
calcAxisOrientation(int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Calculate the new image AxisOrientation, based on re-ordering the axes using axisOrder and axisFlip.
calcBand(TransferFunction, float[]) - Method in class gov.nih.mipav.model.structures.ModelLUT: Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
calcButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Performs statistics calculations
calcButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Calculat button.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: If true calculate the center of gravity (mass) and use the difference to intialize the translation.
calcCOG - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
calcCOG - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
calcCOGCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: DOCUMENT ME!
calcCOGCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
calcColor2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColor2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColor3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColor3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorAStart - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorBStart - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
calcColorEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
CalcConvexHull() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape: Calculates the convex hull of each path in the shape.
calcCropped() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
calcDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
calcEigenVectorFA() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA: Calculates the eigen vector data from the DTI.
calcEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking: Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.
calcEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput: Calls AlgorithmDTI2EGFA to create eigen vector and functional anisotropy images.
CalcElementVar(Vector<CDVector>, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Wrapper to calculate element variables.
CalcElementVar(Vector<CDVector>, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil: Calculates the variance of each component in a set of vectors.
calcEntropy() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcEntropy(ModelSimpleImage, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcEntropy(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropy(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropy(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropy(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothed(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothed(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothed(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothed(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions: DOCUMENT ME!
calcEntropySmoothedWgt(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D: DOCUMENT ME!
calcError(TransMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcError(TransMatrixd) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcFFT(float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
calcFFT25D(float[][], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
calcGradMag() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: DOCUMENT ME!
calcGroup - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps: The top-level group of threads used for calculating.
calcGVF(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Calculate GVF from image buffer.
calcGVF(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Calculate GVF from image buffer.
calcGVF3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor: Calculate GVF from 3D image buffer.
calcGVF3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Calculate GVF from 3D image buffer.
calcGVF3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Calculate GVF from 3D image buffer.
calcHistogram() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: DOCUMENT ME!
calcHistogram(int, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT: Deprecated.

Calculates histogram for the image(s).
calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB: Deprecated.

Calculates histogram for the image(s).
calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

Calculates histogram for the image(s).
calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates histogram for the image(s).
calcHistogram(ModelImage, boolean, int) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates histogram for the image(s).
calcHistogram(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calculates histogram for the image(s).
calcHistogram(ModelImage, int, int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity: Calculates histogram for the imageA, B.
calcHistogramGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB: Deprecated.

Calculates the histogram for the color images GM.
calcHistograms() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Calculates histogram for the imageA, B.
calcHistogramsGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity: Deprecated.

Calculates histogram for the gradient magnitude imageA, B.
calcImageNormals() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Create array of normal vectors corresponding to the voxels in the volume.
calcImagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the individual image panel size based on the current magnification of the image.
calcImagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the individual image panel size based on the current magnification of the image.
calcInBuffer2D(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the laplacian medianess of a 2D image and returns it as a float buffer.
calcInBuffer2D(float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient magnitude of a 2D image and returns it as a float buffer.
calcInBuffer2DUnnormalized(float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient magnitude of a 2D image and returns it as a float buffer.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: Histogram matching of the source image to the base image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: Histogram equalizing of slices to reference slice.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: Calculates the VOI extraction.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint: Calculates the VOI extraction.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: Filters the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This function replaces the original image with a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This function replaces the original image with a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: Filters the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder: Calculates the dicom ordered image and replaces the original image with the dicom ordered image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Runs the calculation and stores the result into the same source buffer.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder: Forms the reversed order image and places the result in original image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates the final output and stores it in the source image.
calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate: Calculates the rotated image and replaces the source image with the rotated image.
calcInPlace(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Generates the flipped image and replaces the source image with the flippeded image.
calcInPlace2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction: From text description in 4th edition Image Processing, Analysis, and Machine Vision International Edition by Milan Sonka, Vaclav Hlavac, and Roger Boyle, Algorithm 6.6 Inner Boundary Tracing, pp. 191-192.
calcInPlace25D(BitSet, float, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace25D(BitSet, float, int, Vector<Integer>, boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace25DC(BitSet, Color, int, String, Vector<Integer>, boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the color source image with fill color.
calcInPlace25DCMask(BitSet, Color, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the color source image with fill color.
calcInPlace25DMask(BitSet, float, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace25DMask(BitSet, float, int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Histogram equalization on the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Histogram equalization on the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Calculate center of mass of 2D black and white image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Calculate red, green, and blue centers of mass for 2D color image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Replace 2D source image with the thresholded image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Replace 2D source image with the thresholded image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Mean filters the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Median filters the source image.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function replaces the source image with the new type image and new data range.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of source image with fill value.
calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function replaces the 2D source image with an image that has noise added to it.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the gradient image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and replaces the source image with the diffused image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Calculates the blurred image and replaces the source image with the blurred image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Calculates the Laplacian image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Calculates the Morphological Filter image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Calculates the non-maximum suppression image and replaces the source image with the new image.
calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: calculates the blurred image and replaces the source image with the blurred image.
calcInPlace2DBuffer(int, float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the Laplacian image and replaces the source image with the new image.
calcInPlace2DBuffer(int, float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient image and returns a float buffer with the new values.
calcInPlace2DBufferUnnormalized(int, float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient image and returns a float buffer with the new values.
calcInPlace2DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of source image with fill value.
calcInPlace2DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of source image with fill value.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Replace 3D or 4D source image with the thresholded image.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Replace 3D or 4D source image with the thresholded image.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: Calculates the gradient magnitude image and replaces the source image with the new image.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function replaces the source image with the new type image and new data range.
calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function replaces the 3D or 4D source image with an image that has noise added to it.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Histogram Equalization on the source image and replaces the source image with the processed image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: Histogram Equalization on the source image and replaces the source image with the processed image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass: Calculate center of mass of 3D black and white image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB: Calculates red, green, and blue centers of mass in 3D color image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the Laplacian and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and replaces the source image with the diffused image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Calculates the blurred image and replaces the source image with the blurred image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: Calculates the Laplacian and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: Mean filters the source image and replaces the source image with the mean filtered image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Median filters the source image and replaces the source image with the median filtered image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: Calculates the Morphological Filter and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: Calculates the non-maximum suppression and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: calculates the UnsharpMask and replaces the source image with the new image.
calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace3DBuffer(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: Calculates the Laplacian image and replaces the source image with the new image.
calcInPlace3DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace3DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace4D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Calculates the blurred image and replaces the source image with the blurred image.
calcInPlace4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace4DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlace4DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills VOI of the source image with fill value.
calcInPlaceBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Replaces the original image with the Median filtered image.
calcInPlaceBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Mode filters the 2D source image.
calcInPlaceBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Mode filters the source image and replaces the source image with the mode filtered image.
calcInPlaceBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Mode filters the 3D source image and replaces it with the mode filtered image.
calcInPlaceColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in the source image.
calcInPlaceColor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
calcInPlaceComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in the source image.
calcIntensity(ModelImage, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculated the total intensity contained within this contour.
calcIntensity(ModelImage, Vector3f, float, float, JPanelPixelExclusionSelector.RangeType) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds values contained within this contour, based on the rangeFlag, ignorMin and ignoreMax.
calcIntensityThreshold(ModelImage, float, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the total intensity contained within this contour, equal to of greater than the threshold.
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
calcjTest(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcLargestDistance(BitSet, int[], float[]) - Method in class gov.nih.mipav.model.structures.VOI: Calculate the distance of the largest line segment contained entirely within the VOI
calcLargestDistance(BitSet, int[], float, float, float, float[], float[], float[], Vector3f, Vector3f) - Static method in class gov.nih.mipav.model.structures.VOI
calcLargestSliceDistance(int[], float[], Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.VOIContour: Calculate the distance of the largest line segment contained entirely within the slice of the VOI
calcLevelSliderMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
calcLineMin() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcLineMinimization() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
calcLowerResol() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: This method calculates the lower X, lower Y, and lower Z coordinates(millimeters) for the CROP VOI region.
calcLSBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: DOCUMENT ME!
CalcMaskImage(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Calculates a reference mask image.
CalcMaxAperture(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
calcMaxNormColors(ModelImage, int) - Method in class gov.nih.mipav.view.PatientSlice: calculates the color normalization factors.
calcMaxNormColors(ModelImage, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask: calculates the color normalization factors
calcMaxPagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the maximum page panel size based on the screen size, the size of the menubar and toolbars and whether the columns or rows are independent.
calcMaxPagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the maximum page panel size based on the screen size, the size of the menubar and toolbars and whether the columns or rows are independent.
calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelImage: Calculates the min and max values for the image array.
calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calculates the min and max values for the image array.
calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calculates the min and max values for the image array.
calcMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset: Calculate the maximum and minimum valuse to setup the window and level sliders.
calcMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Calculate the maximum and minimum valuse to setup the window and level sliders.
calcMinMax(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
calcMinMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Calculate the image range bounds for transfer function determination.
CalcMinMaxEdgeLength(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
calcMinMaxMag(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calculates the min and max magnitude values for the image array.
calcMinMaxNonZero() - Method in class gov.nih.mipav.model.structures.ModelStorageBase: Calculates the min and max nonzero values for the image array.
calcMinMaxSlice(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction: Calculates the min and max values for the image array, so that the image is displayed properly.
calcMinMaxSlope(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
calcMIPBuffer(int, int, int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature: Generates a MIP image from the volume.
calcMSE() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
calcNormals() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals: Calculates the volume normals from the input source ModelImage.
CalcNParam(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA: Calulates the needed number of parameters to retain 'retained_variance'.
calcNumPages() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the number of pages.
calcObjX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the world X coordinates from input MouseEvent coordinates.
calcObjY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the world Y coordinates from input MouseEvent coordinates.
calcOriginalMarker(int) - Method in class gov.nih.mipav.model.file.FileAfni: DOCUMENT ME!
calcPagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the size of the page Panel.
calcPagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the size of the page Panel.
calcPaintedVolume(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Calculates the volume of the painted voxels.
CalcPixel2ShapeWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder: Calculates the pixel-to-shape weights used in the combined PCA.
calcQuadSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Calculates quad surface.
calcQuadSurface(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Calculates quad surface.
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel: Fit to function - a1 + (1 - a1)*[1 - 1/sqrt(1 + 4*PI*a0*x)].
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel: Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
calcRBSpline(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Reslice data is Cubic Bspline where.
calcRCUBIC(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice: Reslice using cubic convolution reslice where.
calcRGBBand(TransferFunction, float[]) - Method in class gov.nih.mipav.model.structures.ModelRGB: Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
calcRGBIntensity(ModelImage, int) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the total intensity contained within this contour for the input color channel.
calcRGBIntensity(ModelImage, ColorRGB, ColorRGB, ColorRGB, float, float, float, float, float, float, JPanelPixelExclusionSelector.RangeType) - Method in class gov.nih.mipav.model.structures.VOIBase: Finds values contained within this contour, based on the rangeFlag, ignoreMinR, ignoreMaxR, ignoreMinG, ignoreMaxG, ignoreMinB, and ignoreMaxB.
calcRGBIntensityThreshold(ModelImage, int, float) - Method in class gov.nih.mipav.model.structures.VOIBase: Calculates the total intensity contained within this contour for the input color channel, that is greater than or equal to the input threshold value.
calcrTest(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
calcSalScale1D(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale1DAA(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale1DParzen(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale2D(short[], short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
calcSalScale3D(short[], short[], short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
CalcScanLines() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame: Calculates the scanlines of the mask image.
calcScreenSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera: Calculate the screen size in pixels.
calcScreenSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: Calculate the screen size in pixels.
calcScreenX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the screen X coordinates from input world coordinates.
calcScreenY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the screen Y coordinates from input world coordinates.
calcSelectedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: The VOI being used just for this calculation (may be a single curve of a single slice or entire VOI
CalcShapeDistances(CAAMShape, CAAMShape, double[], double[], CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader: Calculates optimization results.
CalcShapeDistances(CAAMShape, CAAMShape, double[], double[], CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil: Calculates optimization results.
calcShearWarpImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: Transform the image into shear warp image, which has the same resolution.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType: Calculates the PDU item type size.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUType: Calculates the size of this PDU type.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase: These methods must be implemented by each class that extends this class.
calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation: Calculates the PDU item type size.
calcSlopeAndB() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
calcStartLocations(float[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Calculates the new start locations based on image orientation.
calcStats - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
calcStatsPerContour(FileInfoBase, VOIBase, int, String, String, float, float, VOIStatisticalProperties, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates statistics for a single contour.
calcStatsPerContourRGB(FileInfoBase, VOIBase, int, String, String, float, float, float, float, float, float, VOIStatisticalProperties, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates statistics for a single contour.
calcStatsTotal(VOI, VOIStatisticalProperties, FileInfoBase, String, String, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D: Calculates the statistics for the VOI as a whole (across all contours within the VOI).
calcStatsTotalRGB(VOI, VOIStatisticalProperties, FileInfoBase, String, String, float, float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch: This function produces a new image that has had itself histogram matched to the base image. places filtered image in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch: This function produces a new image that has had all slices histogram equalized to reference slice. places filtered image in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in a new (destination) image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge: This function produces a color edged image into a ModelImage that does not replace the original image-data.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: This function produces a new image that has had edge extraction by FIRE operators
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: This function produces a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: This function produces a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: This function produces a new image that has had fuzzy minimization filtering
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: This function produces a new image that has had fuzzy minimization filtering
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization: This function produces a local-normalized image into a ModelImage that does not replace the original image-data.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: This function produces a new image that has had rule based contrast enhancement
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Adds image margins and stores result in destImage.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Concatenate the image and store the results in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Calculates the gray scale image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices: DOCUMENT ME!
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: Runs the calculation and stores it in a new ModelImage.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in a new (destination) image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices: Calculates the final output and puts it in a destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Replace the values and store into a new image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Concatenate the image and store the results in the destination image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Calculates the gray scale image.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays: Calculates the new images.
calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB: Calculates the new images.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: This function produces a new image that has had itself histogram equalized. places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: This function produces a new image that has had itself histogram equalized. places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Stores the thresholded image into the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Stores the thresholded image into the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: This function produces a new image that has been mean filtered and places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: This function produces a new image that has been median filtered and places filtered image in the destination image.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function produces a new image with the new data type and new data range.
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function produces a new image that has been cropped!
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function produces a new 2D image that is the sum of the source image and noise.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: This function produces the Laplacian of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and stores the resultant diffused image in the destination image model.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: This function produces a new image that has been blurred.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: This function produces the gradient magnitude of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: This function produces the Laplacian of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: This function produces the Morphological Filter of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: This function produces the non-maximum suppression of input image.
calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: this function produces a new image that has been blurred.
calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: This function produces the EdgeLap of input image.
calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: This function produces the EdgeLap of input image.
calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: This function produces the EdgeNMSup of input image.
calcStoreInDest2DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for color images.
calcStoreInDest2DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination images for color images.
calcStoreInDest2DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest2DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual: Stores the thresholded image into the destination image.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB: Stores the thresholded image into the destination image.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude: This function produces the gradient magnitude of input image.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType: This function produces a new image with the new data type and new data range.
calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise: This function produces a new 3D or 4D image that is the sum of the source image and noise.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE: This function produces a new volume image that has been histogram equalized.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: This function produces a new volume image that has been histogram equalized.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess: This function produces the Laplacian of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion: Calculates the diffused image and stores the resultant diffused image in the destination image model.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Produces a new image that has been blurred.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian: This function produces the Laplacian of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean: This function produces a new volume image that has been mean filtered.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: This function produces a new volume image that has been median filtered.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter: This function produces the Morphological Filter of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression: This function produces the Non-maximum suppression of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask: this function produces the UnsharpMask of input image.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function produces a new image that has been cropped.
calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: This function produces the Laplacian of input image.
calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: This function produces the EdgeLap of input image.
calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression: This function produces the Non-maximum suppression of input image.
calcStoreInDest3DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for color images.
calcStoreInDest3DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination images for color images.
calcStoreInDest3DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest3DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur: Produces a new image that has been blurred.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function produces a new image that has been cropped.
calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest4DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation: This function calculates the autocorrelation coefficients and places them in the destination image for color images.
calcStoreInDest4DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance: This function calculates the autocovariance coefficients and places them in the destination images for color images.
calcStoreInDest4DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDest4DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask: Fills new image/VOI with new fill value;
calcStoreInDestBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: This method produces a new image that has been mode filtered and places filtered image in the destination image.
calcStoreInDestBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: This function produces a new image that has been mode filtered and places filtered image in the destination image.
calcStoreInDestBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian: Median filters the source image and replaces the source image with the mode filtered image.
calcStoreInDestBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode: Mode filters the 3D source image and makes a new image for the mode filtered image.
calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim: This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI: Generates the new data and places in a new (destination) image.
calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
calcStoreInDestComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath: Generates the new data and places in a new (destination) image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction: Edge extraction by FIRE operators of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji: Fuzzy minimization filtering of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization: Fuzzy minimization filtering of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement: Rule based contrast enhancement of the source image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Adds image margins and stores result in srcImage Must use getSrcImage after running this routine.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat: Concatenate the image Must run getImageR after running this routine.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal: Calculates the gray scale image.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue: Replace the values in place.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat: Concatenate the image Must run getImageR after running this routine.
calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray: Calculates the gray scale image.
calcStoreInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function crops srcImage Must use getSrcImage after running.
calcStoreInPlace3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function crops srcImage Must use getSrcImage after running.
calcStoreInPlace4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop: This function crops srcImage Must use getSrcImage after running.
calcTCoordX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the X Texture Coordinates from world coordinates.
calcTCoordY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Calculate the Y Texture Coordinates from world coordinates.
calcTensor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
calcTensor(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
calcThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the thresholded image based on the parameters of the threshold transfer function.
calcThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the thresholded image based on the parameters of the threshold transfer function.
calcThresholdVolume - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT: Deprecated.

DOCUMENT ME!
calcThresholdVolume - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
calcThresholdVolume(float, float) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB: Deprecated.

DOCUMENT ME!
calcTotalVolume(SurfaceAttributes, TreatmentInformation) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Calculate the burning points total volume.
calcTracts(VOIBaseVector[], int, int, int, int, int, int, int, ModelImage, ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
calcTriSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction: Calculates triangulated surface.
calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D: DOCUMENT ME!
calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D: DOCUMENT ME!
calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: DOCUMENT ME!
calculate(libdt.CovMatrix, libdt.Mat, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt
calculate_rho() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
calculate_rho() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
calculate_rho() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
calculate_rho() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
calculate2PResiduals(double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateB0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
calculateBestToWorst(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateBin(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
calculateBin(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
calculateBoundingBox() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
calculateBoundingBox(ModelImage, ModelImage) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
calculateCenterOfMass2D(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calculates the center of mass (gravity) of a 2D image using the intensity of each pixel as a weighting value.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D: Calculates the center of mass (gravity) of a 2D image.
calculateCenterOfMass3D(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D: Calculates the center of mass (gravity) of a 3D image.
calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D: Calculates the center of mass (gravity) of a 3D image.
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitExponential
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLine
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: Calculates chi squared
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: From the cropped images, apply Coherence Enhanced Diffusion filter to each 2D slices.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Calculate the CED image.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Apply the coherence enhancing diffusion filter to the croppred MR image.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Apply the coherence enhancing diffusion filter to the croppred MR image.
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
calculateConformal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis: Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
calculateConformal() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender: Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
calculateConvergenceMeasurement(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
calculateCostButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
calculateCostButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
calculateCostFunctionValues() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
calculateCostFunctionValues() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
calculateCustomDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph
calculateCustomRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Calculates the range and domain (according to min and max y values). and expands range if necessary.
calculateDefaultRangeDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph: Calculates the default range and domain (according to min and max x and y values).
calculateDerivativeImage(float[], int[], boolean, float[][], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
calculateDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateDTI(int, int, float[], float[][][], Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateDTIVoxel(float[], float[][], float[][][], int, int, int, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateDTIVoxel2(float[], float[][], float[][][], int, int, int, Matrix, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitExponential
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLine
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction: Calculates yDataFitted
calculateFreeRangeThreshold(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calculateFuzzyCMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate Gabor filter.
calculateGaborFilter() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: generate the gaussian filter.
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: generate the gradient magnitude image.
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture: DOCUMENT ME!
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Genernate Haralick images.
calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate hurst index image.
calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateImageSize(int[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Calculate the size of the image.
calculateIntercept(double, double, double) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Calculates rescale intercept given a min and a slope value.
calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate the invert image.
calculateLaws() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture: DOCUMENT ME!
calculateM0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
calculateM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
calculateM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
calculateMatrix(Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
calculateMaxAndMinVals() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate mean image.
calculateMedian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate the median image.
calculateMinMaxValues(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor: Called by the TextureSculptor or VolumeSculptor objects.
calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateNewOrigin(ModelImage, int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins: Calculates the origin values for the modified image, based on the current origin values and the added margins.
calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Calculate number of features being saved.
calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
calculateOutput() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
calculatePixelHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex: DOCUMENT ME!
calculatePrincipleAxis(ModelImage, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase: Working ...
calculateProgressRatios(int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Calculates the progress ratios for different algorithms.
calculateProgressValueBoundary(int, float[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor: Calculates the boundary of progress value which is assigned to the indexth algorithm.
calculateRadii() - Method in class gov.nih.mipav.view.ColorWheel: calculates radii of the interior circles using Lambertian equal areas equation used: r = 2 |sin(theta/2)|
calculateREG(byte[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
calculateRelativeTime(double) - Method in class gov.nih.mipav.model.file.FileZVI
calculateRescaleIntercept(double[], double[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc: In MINC images, "real" values for pixels are calculated by taking the given image min and image max and rescaling the data accordingly.
calculateRescaleIntercept(double[], double[], double[], double[], double[], boolean) - Static method in class gov.nih.mipav.model.file.FileInfoMincHDF: In MINC images, "real" values for pixels are calculated by taking the given image min and image max and rescaling the data accordingly.
calculateResiduals() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares: CalculateResiduals.
calculateResiduals() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation: CalculateResiduals.
calculateResiduals() - Method in class gov.nih.mipav.view.ViewJFrameRegistration: Calculates the residuals of the least squares fit.
calculateResiduals() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool: Calculates the residuals of the least squares fit.
calculateResiduals(double[], double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateSliceHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
calculateSliceTamuraTexture() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
calculateSlope(double, double, double, double) - Static method in class gov.nih.mipav.model.file.FileInfoMinc: Calculates rescale slope given a min and a max value.
CalculateT(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
calculateT1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
calculateT1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1: The list of possible maps that can be calculated
CalculateT1(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1
calculateT1UsingConventionalTreT1() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
CalculateT1UsingConventionalTreT1Inner(ModelImage, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner
calculateT1UsingTreT1HIFI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
calculateT2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
calculateT2with0Phase() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateT2with180Phase() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateT2withApproximateModeling() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateT2withFullModeling() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateTagOffset(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffReader: Determine the offset of a given tag within the specified IFD.
calculateThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
calculateThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
calculateThreshold(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
calculateThreshold(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
calculateThreshold(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression: DOCUMENT ME!
calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Extract the theshold from grount truth label.
calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
calculateThreshold(ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT: Performs smart thresholding for the given image at at certain slice k
calculateThresholdArea(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
calculateThresholdArea(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
calculateThresholdVolume(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram: Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
calculateThresholdVolume(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT: Deprecated.

Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
calculateTimeInSeconds() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
calculateTimeStampString(long) - Method in class gov.nih.mipav.model.file.FileZVI
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
calculateTransform(ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
calculateTransform(ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
calculateTransform(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
calculateTransform(ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
calculateTransform_dim_fixed(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
calculateTransform_dim_fixed(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
calculateTwoPResiduals(double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
calculateValidEndZIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
calculateValidStartZIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
calculateVOIHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
calculateVOIsVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Compute the VOIs binary mask based volumes.
calculateVOIsVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast: Compute the VOIs binary mask based volumes.
calculateVTDateTimeString(double) - Method in class gov.nih.mipav.model.file.FileZVI
calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: Generate the wavelet image
calculator - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: DOCUMENT ME!
CalculteT1UsingTreT1HIFIInner(ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner
calcVolume(ModelImage, ModelTriangleMesh[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
calcVolume(SurfaceAttributes, TreatmentInformation) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase: Calculate the current burning point volume.
calcVolumeMask(BitSet, ModelImage, Vector3f[], int, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
calcVoxels() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView: Identify all voxels that are inside or on the mesh that represents the brain surface.
calcWindowSliderMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
calcWinLevTransferFunction(ModelImage, float, float, float[], float[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: Calculate the x and y components of the transfer function, given the active image and the desired window and level.
calcXProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Calculates the X Projection for color or black and white images.
calcYProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Calculates the Y Projection for color or black and white images.
calcZeroX(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
calcZeroXMaskBitset(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian: Calculates the zero crossing mask of a 2D image and returns it as a BitSet buffer.
calcZeroXMaskBitset(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep: Calculates the zero crossing mask of a 2D image and returns it as a BitSet buffer.
calcZProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection: Calculates the Z Projection for color or black and white images.
calFldStr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 388 Calibrated Field Strength (x10 uGauss).
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: DOCUMENT ME!
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
CALIBRATED_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
CalibrationDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CalibrationTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
call(Vertex, Point3, float[], Point3) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointDistanceFunctor
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices: Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins: Once all the necessary variables are set, call the Image Margins algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE: Once all the necessary variables are set, call the AGCIE algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal: Once all the necessary variables are set, call the local AHE algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE: Once all the necessary variables are set, call the AINDANE algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion: Once all the necessary variables are set, call the Barrel/Pincushion Distortion Correction algorithm based on what type of image this is
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter: Once all the necessary variables are set, call the Bilateral Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation: Construct and run the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB: Once all the necessary variables are set, call the threshold rgb algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogClose: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge: Once all the necessary variables are set, call the local normalization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation: Once all the necessary variables are set, call the Color Saturation Adjustment algorithm based on what type of image this is
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat: Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: calls algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: calls algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: calls algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion: Once all the necessary variables are set, call the contrast enhancement using exposure fusion algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField: Once all the necessary variables are set, call the convergence field algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: Call Algorithm.....calls the RGBConcat algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType: Once all the necessary variables are set, call the Change Type algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing: Call algorithm to copy appropriate images from original, and double where necessary.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram: Calls the CumulativeHistogram Algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment: Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI: Method for calling the Dicom to AVI algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample: Resample images to power of 2.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing: Once all the necessary variables are set, call the Edge Preserving Smoothing algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed: Once all the necessary variables are set, call the Efficient Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection: Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization: Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogErode: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices: Run the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes: Once all the necessary variables are set, call the Extract Surface algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Once all the necessary variables are set, call the FFT algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects: When OK button is clicked, this method is invoked.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker: Not used.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRET: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Once all the necessary variables are set, call AlgorithmFRETBleedThrough.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Once all the necessary variables are set, call AlgorithmFRETEfficiency.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing: Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude: Once all the necessary variables are set, call the Gradient Magnitude algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector: Once all the necessary variables are set, call the Harris corner detector algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed: Once all the necessary variables are set, call the HillClimbing Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary: Once all the necessary variables are set, call the Histogram algorithm based on whehter the image is color or not.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex: Once all the necessary variables are set, call the Hurst Index algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD: Once all the necessary variables are set, call the IAGCWD contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects: Once all the necessary variables are set, call the IDObjects algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction: Once all the necessary variables are set, call the IHN3 Correction algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath: Once all the necessary variables are set, call the Image Math algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Once all the necessary variables are set, call the Insert Slice algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice: Once all the necessary variables are set, call the Insert Slice algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume: Once all the necessary variables are set, call the Insert Volume algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert: Once all the necessary variables are set, call the Change Type algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature: Once all the necessary variables are set, call the Isophote Curvature algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression: Once all the necessary variables are set, call the Kernel Regression algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture: Once all the necessary variables are set, call the Laws feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE: Once all the necessary variables are set, call the locally linear embedding algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: Once all the necessary variables are set, call the local normalization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance: Once all the necessary variables are set, call the local variance algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion: Once all the necessary variables are set, call the Lower Completion algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation: Once all the necessary variables are set, call the LuminanceAdaptation algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth: Once all the necessary variables are set, call the Markov Smooth algorithm based on whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMask: Once all the necessary variables are set, call the Mask algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages: Once all the necessary variables are set, call the Match Images algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution: Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMean: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation: Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMode: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter: Once all the necessary variables are set, call the Sizeian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian: Once all the necessary variables are set, call the gray scale morphology algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices: Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection: Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection: Once all the necessary variables are set, call the N4 MRI Bias Field Correction algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel: Once all the necessary variables are set, call the NLAlgo
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents: run.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets: Once all the necessary variables are set, call the Barrel/Pincushion Distortion Correction algorithm based on what type of image this is
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify: Once all the necessary variables are set, call the quantify mask algorithm using the previously set file name.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder: Locks the images, then runs the inverse slice order algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting: Once all the necessary variables are set, call the region merging via boundary melting
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders: Once all the necessary variables are set, call the regions from partial borders
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Calls the algorithm, assuming the variables are already set up.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D: Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice: Calls the algorithm using the mode.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: Once all the necessary variables are set, call the RGBConcat algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation: Once all the necessary variables are set, call the Bilateral Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase: Starts the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: Calls the algorithm with the set variables.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed: Once all the necessary variables are set, call the SequentialScanning Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed: Once all the necessary variables are set, call the ShortestPath Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: Calls the algorithm with the set-up parameters.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion: Once all the necessary variables are set, call the simulated exposure fusion contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel: Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed: Once all the necessary variables are set, call the Split And Merge Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample: Method for calling the Subsample algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims: Runs the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes: Once all the necessary variables are set, call the Swap Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI: Once all the necessary variables are set, call the kidney segmentation algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor: Once all the necessary variables are set, call the Symmetric Nearest Neighbor algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture: Once all the necessary variables are set, call the Tamura Texture algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation: Once all the necessary variables are set, call the texture segmentation algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D: Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB: Once all the necessary variables are set, call the threshold rgb algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection: Once all the necessary variables are set, call the tilt correction algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling: Once all the necessary variables are set, call the Union Find Component Labelling algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed: Once all the necessary variables are set, call the UnionFind Watershed algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask: Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA: Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement: Once all the necessary variables are set, call the simulated exposure fusion contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction: Calls the algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Once all the necessary variables are set, call the VOI Props algorithm to run the statistic calculation.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse: Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts: Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold: Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: call algorithm
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature: Driver to do automatic feature extraction.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D: Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches: Driver function to read image and VOIs, and convert each 3D image to 2D slices.
callAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation: Method for calling various cost algorithms, should only be called after registered image is created.
callAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts: DOCUMENT ME!
callAlgorithm(ModelImage, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D: Single thread based segmentation, which takes up to 40 minutes.
callAlgorithm2() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Once all the necessary variables are set, call the FFT algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithmFrequencyFilter() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callAlgorithmNonInteractive(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMask: method is meant to be used when the algorithm needs to be performed non-interactively, hence the hardcoding of the variables.
callAlgorithmRun() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient: For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees).
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt: Mouse behavior callback reference.
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom: DOCUMENT ME!
callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior: DOCUMENT ME!
callback_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
CallbackReturnType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType
callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
callColorAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callColorAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter: Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
callDialog(int[], int, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO: Calls GUI dialogs based on what type of image this is and the number of dimensions.
calledAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: The called application entity name, must be 16 or less characters.
callExtractAlgorithm() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: call the ExractSlices algorithm, building the dest image based on the type of the src image.
callFrameDeleteAllButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with frame deletion.
callFrameDeleteButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with frame deletion.
callFrameToFrontButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Button for bringing frame to front
callGCbutton - Variable in class gov.nih.mipav.view.ViewJFrameMemory: DOCUMENT ME!
callGCButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Button for dealing with garbage collection
callImageDeleteAllButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with image deletions
callImageDeleteButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages: Buttons for dealing with image deletions
callingAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ: The calling application entity name, must be 16 or less characters.
callReg35Algorithm(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Calls the algorithm with the set-up parameters.
callRemoveAlgorithm() - Method in class gov.nih.mipav.view.ViewJFrameLightBox: call the RemoveSlices algorithm, building the dest image based on the type of the src image.
calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics
calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback
calls_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
CallStatistics() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics
callT2Algorithm(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing: Calls the algorithm with the set-up parameters.
callTalAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform: DOCUMENT ME!
callVOIAlgo(ViewVOIVector, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
calPtArr() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
camera - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
camera - Variable in class gov.nih.mipav.model.file.FileInfoZVI
camera - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
Camera - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
cameraAdapterMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraBinning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameHeight - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameImageOrientation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFramePixelDistance - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameStartLeft - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameStartTop - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraFrameWidth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime - Variable in class gov.nih.mipav.model.file.FileZVI
cameraImageAcquisitionTime0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraImageAcquisitionTime3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraLiveScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
CameraLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
cameraMake - Variable in class gov.nih.mipav.model.file.FileInfoBase
cameraMakeBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraMakeTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraModel - Variable in class gov.nih.mipav.model.file.FileInfoBase
cameraModelBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraModelList - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraModelTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
cameraNearPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Slider for moving the camera near-plane in/out from the eye position.
cameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView: DOCUMENT ME!
cameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView: DOCUMENT ME!
cameraPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
cameraRotationDegreeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: camera rotation degree label
cameraRotationDegreeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: camera rotation degree label
cameraRotationDegreeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation: camera rotation degree slider
cameraRotationDegreeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM: camera rotation degree slider
CameraSettings() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings
CameraSettings() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings
cameraShadingCorrection - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraShutterLiveEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
cameraViewRotationDegree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
cameraXLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera move parameter labels
cameraXTurnLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera turn parameter labels
cameraYLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera move parameter labels
cameraYTurnLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera turn parameter labels
cameraZLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM: Camera move parameter labels
cancel - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
cancel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Buttons used for the host tab
CANCEL - gov.nih.mipav.view.dialogs.ExitStatus: Cancel button pressed
CANCEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer: DOCUMENT ME!
CANCEL - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
cancelACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
cancelAction() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection: Calls the super.cancelAction.
cancelAction() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection: Calls setVisible(false) to close the dialog.
CancelAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction
cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameAnimate: Resets current slice's brightness and contrast to original.
cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM: Resets current slice's brightness and contrast to original.
cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression: Resets current slice's brightness and contrast to original.
cancelButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
cancelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
cancelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: DOCUMENT ME!
cancelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: DOCUMENT ME!
cancelButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase: Cancel button is used on most dialogs.
cancelButton - Variable in class gov.nih.mipav.view.ViewJProgressBar: Cancel button, if applicable.
cancelButton - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
cancelCellEditing() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
CancelColorListener() - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener
cancelFlag - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: If true then the DICOM query is cancelled.
cancelFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogBase: Flag indicating if the dialog had been cancelled or not.
cancelFlag - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase: Flag indicating if the dialog had been cancelled or not.
cancelFlag - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
cancelled - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: Flag to indicate if the receive process should be cancelled.
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
CancelListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.CancelListener
cancelPendingMoves() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Cancels pending moves.
cancelPendingQuery() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Cancels pending query.
cancelPressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: DOCUMENT ME!
cancelPressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: DOCUMENT ME!
cancelQ - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery: DOCUMENT ME!
cancelSorting() - Method in class gov.nih.mipav.model.structures.TableSorter: DOCUMENT ME!
cancelTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach: DOCUMENT ME!
cancelTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
canCloseImageBAfterLoad() - Method in class gov.nih.mipav.view.ViewJFrameBase: Returns whether or not the close image B option should appear after loading.
canContainMetadata - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
canContainMetadataTypes - Static variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
Candidate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates
candidate_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
candidate_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
candidate_x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
canImport(JComponent, DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler: DOCUMENT ME!
canImport(JComponent, DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
canImport(TransferHandler.TransferSupport) - Method in class gov.nih.mipav.view.ViewUserInterface.ImageTransferHandler
CANNY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CANNY - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
cannyAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection: DOCUMENT ME!
CannyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
CannyPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
CANONICAL_VIEWS - gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType
CanonicalViewsClustering() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
CanonicalViewsClusteringOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions
CanonicalViewsTestComputeCanonicalViewsTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonicalViewsTestSimilarityPenaltyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonicalViewsTestSizePenaltyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonicalViewsTestViewScoreTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CanonMakernoteDescriptor(MetadataExtractor.CanonMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
CanonMakernoteDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.CanonMakernoteDescriptorTest
CanonMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory
canProcessMouseClick - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
canReadImages() - Method in interface gov.nih.mipav.plugins.PlugInFile: Returns whether this plugin supports reading of images in its format.
canSetTypeAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the ambient type.
canSetTypeDirectional() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the directional type.
canSetTypeNonAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to any non-ambient type.
canSetTypePoint() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the point type.
canSetTypeSpot() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight: Query if light can be set to the spot type.
canvas - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
canvas - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
canvas - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The Canvas3D object on which the surfaces are drawn and where the picking happens.
canvasBounds - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvas boundary.
canvasBounds - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvas boundary.
canvasCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior: Canvas center.
canvasCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer: Canvas center.
canWeHandleTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService: Determines wheather or not this transfer syntax is support by MIPAV.
canWriteImages() - Method in interface gov.nih.mipav.plugins.PlugInFile: Returns whether this plugin supports writing of images in its format.
capacity - Variable in class gov.nih.mipav.model.structures.IntVector: The initial number of elements to have space for in the vector.
capacity - Variable in class gov.nih.mipav.model.structures.TransferFunction: The total capacity of the 2D point array.
caps - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
capScreenHeight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
capScreenWidth - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender: DOCUMENT ME!
captureComponent(Component) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
captureComponent(Component) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
captureFrame - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: Camera snapshot frame.
captureImage - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase: The resulting ModelImage of the camera snapshot.
captureImage() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
captureImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
captureImageButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay: buttons *
captureImageButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay: buttons *
captureScreen() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse: Captures the canvas.
captureScreen() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse: Captures the canvas.
captureTime - Variable in class gov.nih.mipav.model.file.FileAvi
captureVersion - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
captureVersion - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
Cardiac - Static variable in class gov.nih.mipav.model.structures.ModelLUT
cardiacFrequency - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
cardiacFrequency - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacFrequencyIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacFrequencyPos - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacHeartRate - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cardiacHeartRate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacPhaseNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacPhaseNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
cardiacRepTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X
cardiacRepTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
CARDIOLOGY - Static variable in class gov.nih.mipav.model.structures.VOI: Indicates that the VOI is of type CARDIOLOGY, special VOI for specific tasks needed in cardiology.
caret - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
caretArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
cArray - Variable in class gov.nih.mipav.model.file.FileZVI
CArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
cart2bary(SIFT3D.Cvec, SIFT3D.Tri, SIFT3D.Cvec, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
CartesianToPolar2D(ModelImage, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Cartesian coordinate into the Polar coordinate.
CartesianToPolar2D(Vector2f, Vector2f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Cartesian coordinate into the Polar coordinate, point based.
CartesianToPolar2D(Vector2f, Vector2f, Vector3f) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems: Convert the Cartesian coordinate into the Polar coordinate, point based.
cas - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t
cas - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t
case_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
case_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
case_weights_file - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
CASE0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE10 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE11 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE12 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE13 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE14 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE15 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CASE9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
CasioType1MakernoteDescriptor(MetadataExtractor.CasioType1MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
CasioType1MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory
CasioType2MakernoteDescriptor(MetadataExtractor.CasioType2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
CasioType2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory
cat2D_2D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat2D_3D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat3D_3D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat3D_3D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: This function produces a new image that has been concatenated.
cat3D_4D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: cat.
cat4D_4D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat: cat.
categorizeByShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Shape based similarity measure.
categorizeByTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize: Texture bases similarity measure.
category - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
category - Variable in class gov.nih.mipav.model.file.FileMetaImage
Category - Static variable in interface gov.nih.mipav.plugins.PlugIn
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInAlgorithm
CATEGORY - Static variable in class gov.nih.mipav.plugins.PlugInBundle
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInFile
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInFileTransfer
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInGeneric
CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInView
CATFileName - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
CATPH4(int, double[][], double[][], int, int, int, int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double, double[], double[][], double[], double[], double[][], double[][], double[][], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cauchy(int, double[], double[], double[], int[], double[], int[], int[], double[], double[], double[], int, double[][], double[][], double[][], double[][], double, int, int, double[], double[], double[], double[], int[], int, double, int[], double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
CauchyLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
CB(double, double, double, double[]) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage: Binary interpolation call
Cb_b_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
Cb_b_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
Cb_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
Cb_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
CBackForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CBackForward: Creates a new CBackForward object.
CBackForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CBackForward: Creates a new CBackForward object.
cbCount() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
cbCount() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
cbf_csvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_csvd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_osvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_osvd_OI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_osvd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_svd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbf_svd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.cbfStop: Creates a new cbfStop object.
cbfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.cbfStop: Creates a new cbfStop object.
cbgEdgeDetect_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
cbgImage_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
cblkh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: code-blocks height
cblkh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: code-blocks height
cblksty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: code-block coding style
cblksty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: code-block coding style
cblkw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t: code-blocks width
cblkw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t: code-blocks width
cBoxRemap - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat: DOCUMENT ME!
CbReferenceBlack - Variable in class gov.nih.mipav.model.file.FileSVS
CbReferenceBlack - Variable in class gov.nih.mipav.model.file.FileTiff
CbReferenceWhite - Variable in class gov.nih.mipav.model.file.FileSVS
CbReferenceWhite - Variable in class gov.nih.mipav.model.file.FileTiff
CBRHostName - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
CBRImageDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
CBRProjectionDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat: DOCUMENT ME!
cbuf - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader: The cbuf.
cbv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
cbv_lc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
CBZip2InputStream - Class in gov.nih.mipav.model.file: An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
CBZip2InputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.CBZip2InputStream
CBZip2OutputStream - Class in gov.nih.mipav.model.file: An output stream that compresses into the BZip2 format (without the file header chars) into another stream.
CBZip2OutputStream(OutputStream) - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream
CBZip2OutputStream(OutputStream, int) - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream
CBZip2OutputStream.StackElem - Class in gov.nih.mipav.model.file
cc - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold: DOCUMENT ME!
cc - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
cca - Variable in class gov.nih.mipav.model.algorithms.Cephes
CCIR601_sampling - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
CCJACS(double[], int, double[], double[], double, double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
cConnect - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface: Vertex connection array.
cconvert - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
ccorder - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
ccw - Variable in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
ccw - Variable in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
ccw(double[][], int, int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
ccw_rotate_about_source() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
ccw_rotate_about_target() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
ccwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration: DOCUMENT ME!
ccwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool: DOCUMENT ME!
cd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cd - Static variable in class gov.nih.mipav.model.algorithms.Cephes
CD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
cData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
CDCI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
cdf() - Method in class gov.nih.mipav.model.algorithms.Gamma
CDF - Static variable in class gov.nih.mipav.model.algorithms.Gamma
CDF_type - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
CDF_type - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets: Use serialVersionUID for interoperability.
CDFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
cdff(int, double[], double[], double[], double[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
CDFLIB - Class in gov.nih.mipav.model.algorithms: Legalities ========== We place our efforts in writing this package in the public domain.
CDFLIB() - Constructor for class gov.nih.mipav.model.algorithms.CDFLIB
cdft(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CDFT_4THREADS_BEGIN_N - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cdft_arg_t() - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
CDFT_THREADS_BEGIN_N - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform: -------- DST (Discrete Sine Transform) / Inverse of DST -------- [definition] IDST (excluding scale) S[k] = sum_j=1^n A[j]*sin(pi*j*(k+1/2)/n), 0<=k DST S[k] = sum_j=0^n-1 a[j]*sin(pi*(j+1/2)*k/n), 0 ip[0] = 0; // first time only ddst(n, 1, a, ip, w); ip[0] = 0; // first time only ddst(n, -1, a, ip, w); [parameters] n :data length (int) n >= 2, n = power of 2 a[0...n-1] :input/output data (double *) input data a[j] = A[j], 0 output data a[k] = S[k], 0= 2+sqrt(n/2) strictly, length of ip >= 2+(1<<(int)(log(n/2+0.5)/log(2))/2).
cdft2(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft3(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cdft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CDFWavelets() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
cdiv(double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
cdivi - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
cdivr - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
cdjpeg_progress_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
CDMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix: Constructors
CDMatrix(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDMatrix(int, int, double[][]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDMatrix(CDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDMatrix(CVisDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
CDOptimizeBase - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeBase() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase: Constructor
CDOptimizeBFGS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeBFGS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS: Constructor
CDOptimizeCG - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeCG() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG: Constructor
CDOptimizeFuncBase - Interface in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizePS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizePS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS: Constructor
CDOptimizeSA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeSA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA: constructor.
CDOptimizeSD - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDOptimizeSD() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD: constructor
CDVector - Class in gov.nih.mipav.view.renderer.WildMagic.AAM: This is the Java modified version of C++ active appearance model API (AAM_API).
CDVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: constructor
CDVector(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
CDVector(int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
CDVector(CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
CDVector(CVisDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
ce2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
ce2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
ceButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator: DOCUMENT ME!
cEchoRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Echo request object.
cEchoRSP - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification: Echo response object.
ced_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
cedHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
cedImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cedImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cedImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
cedImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
ceil() - Method in class gov.nih.mipav.util.DoubleDouble: Returns the smallest (closest to negative infinity) value that is not less than the argument and is equal to a mathematical integer.
Ceil() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Takes ceil() of each element.
cel12(double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral: Routine cel12 only calculates complete integrals of the first and second kind with complex arguments Based on the arithmetic-geometric mean procedure Ported from Tohru Morita article.
Cell() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Cell
Cell(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Cell
CELL - Static variable in class gov.nih.mipav.model.file.FileNRRD: The location of the sample is located in the interior of the grid element.
cell_infos_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
cell_values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
cellData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: support for vtk
cellEditor - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
CellInfo() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
CellInfo(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
CellLessThan() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellLessThan
cellRenderer - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
cells - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
cellSpace - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 54 Cell spacing.
celltype(boolean, boolean, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
celltype(boolean, boolean, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
cen_index(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
cenFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 296 Center frequency method.
cenMassPt - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the black and white center of mass of the contour of a VOI.
cenMassPtB - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the blue center of mass of the contour of a VOI.
cenMassPtG - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the green center of mass of the contour of a VOI.
cenMassPtR - Variable in class gov.nih.mipav.model.structures.VOIBase: Stores the red center of mass of the contour of a VOI.
censoring - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
CENSY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
center - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform: DOCUMENT ME!
center - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
center - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
center - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes: burn center.
center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: Burning point coordinate.
center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Burning center coordinate.
center - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
center() - Method in class gov.nih.mipav.view.PatientSlice: Calculate the volume center in PatientCoordinates and set the z-value for this slice.
center() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh: Calculates and returns the center point of the Mesh:
center() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
center(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2: Centers the FFT for display purposes.
center(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter: Centers the FFT for display purposes.
center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor: Centers the FFT for display purposes.
center(SchwarzChristoffelMapping.scmap, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
Center - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Widget Center:
Center - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
center_fix_mt - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
center_fix_quadnum - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
center_frequency - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
CENTER_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase: DOCUMENT ME!
centerAndWidth(Point3D, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CenterAndWidth(int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
CenterAndWidth(int, int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
CenterAndWidth(long, Point3D, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
centerBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
centerButtonSelected - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: DOCUMENT ME!
centerCenter - Variable in class gov.nih.mipav.model.file.FileInfoInterfile: DOCUMENT ME!
CenterCount(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
centered_gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW: Function to compute the gradient with centered differences
CENTERED1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
CENTERED2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
centerGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
centerGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
centerid - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: id of rotation center
centerInComponent(Component, JDialog) - Static method in class gov.nih.mipav.view.MipavUtil: Sets the location of the dialog to the center of the parent component.
centerIndex(int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
CenterIndex(int, int[], int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CenterIndex(OctNode, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
CenterIndex(OctNode, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
centerInWindow(Window, Window) - Static method in class gov.nih.mipav.view.MipavUtil: Sets the location of the window to the center of the parent window.
CENTERJSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
centerLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe: burning point center label.
centerLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
CenterOfGravity(double[][]) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
centerOfMass - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain: The volume's center of mass computed from computeCenter(ModelImage, int, boolean)
centerOfRotation - Variable in class gov.nih.mipav.model.file.FileInfoMetaImage: Use serialVersionUID for interoperability.
centerOnScreen(Window) - Static method in class gov.nih.mipav.view.MipavUtil: Sets the location of the window to the center of the screen.
CenterPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle: Returns the center point of the triangle.
CenterPointX - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CenterPointY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
CenterPointZ - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision: DOCUMENT ME!
centerPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
centerPtLocation - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration: location of the center pt VOI (for registration rotation).
centerRB - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
centerRootNode() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel: Centers the root node in the display.
centerRootNodeButton - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
centers - Variable in class gov.nih.mipav.model.file.FileNRRD: May remain null or may be created as NONE, CELL, or NODE.
centers_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
centerSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
centerTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute: Burning center tranform.
centerVOI - Variable in class gov.nih.mipav.view.ViewJComponentRegistration: center rotation VOI
centerWeightContribution - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData
centerX - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: angles are passed to setRotate.
centerX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Canvas center coordinate.
centerY - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: angles are passed to setRotate.
centerY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse: Canvas center coordinate.
centerZ - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation: angles are passed to setRotate.
CENTIMETERS - gov.nih.mipav.model.file.FileInfoBase.Unit: Unit of measurement centimeters.
CENTIMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase: Unit of measurement centimeters.
CENTIMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase: String version of units of measurement - centimeters.
CENTR - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
CENTRAL - gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType
central_frequency(PyWavelets.ContinuousWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
central_frequency(PyWavelets.DiscreteWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
centralBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
CentralDifference - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
centroidDistances - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
centroidDistances - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
centroidPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
centroidPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
centroidPos - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
centroidPos - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
centroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
centroids - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures: DOCUMENT ME!
Cephes - Class in gov.nih.mipav.model.algorithms: Correct values for ndtri are taken from scipy-main/scipy/special/tests/test_ndtr.py under the BSD-3 license: Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.
Cephes() - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, double[], int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, double, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(double, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(int, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
Cephes(int, int, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
CERES_CURVE_FITTING - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
CERES_NO_CXSPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CERES_NO_SUITESPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CERES_USE_EIGEN_SPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
CeresSolver - Class in gov.nih.mipav.model.algorithms: This is a port of the C++ files in ceres-solver-1.14.0 under the BSD license: Ceres Solver - A fast non-linear least squares minimizer Copyright 2015 Google Inc.
CeresSolver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver
CeresSolver.ArctanLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.ArmijoLineSearch - Class in gov.nih.mipav.model.algorithms
CeresSolver.AutoDiffCostFunction<CostFunctor> - Class in gov.nih.mipav.model.algorithms
CeresSolver.BadTestTerm - Class in gov.nih.mipav.model.algorithms
CeresSolver.BFGS - Class in gov.nih.mipav.model.algorithms
CeresSolver.Block - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockEvaluatePreparer - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockJacobiPreconditioner - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockRandomAccessDenseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockRandomAccessDiagonalMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockRandomAccessMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.BlockSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.CallbackReturnType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.CallStatistics - Class in gov.nih.mipav.model.algorithms
CeresSolver.CauchyLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.Cell - Class in gov.nih.mipav.model.algorithms
CeresSolver.CellInfo - Class in gov.nih.mipav.model.algorithms
CeresSolver.CellLessThan - Class in gov.nih.mipav.model.algorithms
CeresSolver.CgnrLinearOperator - Class in gov.nih.mipav.model.algorithms
CeresSolver.CgnrSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.Chunk - Class in gov.nih.mipav.model.algorithms
CeresSolver.ComposedLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedList - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowBlockStructure - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowJacobianWriter.indexintintComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowJacobianWriter.indexintintItem - Class in gov.nih.mipav.model.algorithms
CeresSolver.CompressedRowSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.ConjugateGradientsSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.Context - Class in gov.nih.mipav.model.algorithms
CeresSolver.CoordinateDescentMinimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.Corrector - Class in gov.nih.mipav.model.algorithms
CeresSolver.CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.CostFunctorExample - Class in gov.nih.mipav.model.algorithms
CeresSolver.CovarianceAlgorithmType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.CRSMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.CurveFittingFunctorExample - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseLinearAlgebraLibraryType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.DenseNormalCholeskySolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseQRSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseSchurComplementSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.DenseSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.DoglegStrategy - Class in gov.nih.mipav.model.algorithms
CeresSolver.DoglegType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.DumpFormatType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.DynamicCompressedRowJacobianFinalizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.DynamicCompressedRowJacobianWriter - Class in gov.nih.mipav.model.algorithms
CeresSolver.DynamicCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.DynamicNumericDiffCostFunction<T> - Class in gov.nih.mipav.model.algorithms
CeresSolver.EasyCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.EasyFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.EigenQuaternionParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluateOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluateScratch - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.Evaluator - Class in gov.nih.mipav.model.algorithms
CeresSolver.EvaluatorOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.EventLogger - Class in gov.nih.mipav.model.algorithms
CeresSolver.ExecutionSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.ExponentialCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.ExponentialFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.FirstOrderFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.FunctionSample - Class in gov.nih.mipav.model.algorithms
CeresSolver.GoodTestTerm - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientChecker - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientCheckingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientCheckingIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblem - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemEvaluator - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolverOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolverStateUpdatingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.GradientProblemSolverSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.Graph<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.HomogeneousVectorParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.HuberLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.IdentityParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.ImplicitSchurComplement - Class in gov.nih.mipav.model.algorithms
CeresSolver.indexValueItem<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.IterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.IterationSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.IterativeSchurComplementSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.LBFGS - Class in gov.nih.mipav.model.algorithms
CeresSolver.LevenbergMarquardtStrategy - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearCostFunction - Class in gov.nih.mipav.model.algorithms: Helper cost function that multiplies the parameters by the given jacobians and adds a constant offset.
CeresSolver.LinearLeastSquaresProblem - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearOperator - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverPerSolveOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverTerminationType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LinearSolverType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LineSearch - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchDirection - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchDirectionOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchDirectionType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchInterpolationType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchMinimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchMinimizer.State - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchPreprocessor - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.LineSearchType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LocalParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.LoggingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.LoggingType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.LossFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.LossFunctionWrapper - Class in gov.nih.mipav.model.algorithms
CeresSolver.LowRankInverseHessian - Class in gov.nih.mipav.model.algorithms
CeresSolver.Minimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.MinimizerOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.MinimizerType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.MyCostFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.MyThreeParameterCostFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.NonlinearConjugateGradient - Class in gov.nih.mipav.model.algorithms
CeresSolver.NonlinearConjugateGradientType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.NormalPrior - Class in gov.nih.mipav.model.algorithms
CeresSolver.NullJacobianFinalizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.NumericDiffCostFunction<CostFunctor> - Class in gov.nih.mipav.model.algorithms
CeresSolver.NumericDiffMethodType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.NumericDiffOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.OnlyFillsOneOutputFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.OrderedGroups<T> - Class in gov.nih.mipav.model.algorithms
CeresSolver.Ownership - Enum in gov.nih.mipav.model.algorithms
CeresSolver.Pair<T,U> - Class in gov.nih.mipav.model.algorithms
CeresSolver.ParameterBlock - Class in gov.nih.mipav.model.algorithms
CeresSolver.PartitionedMatrixView - Class in gov.nih.mipav.model.algorithms
CeresSolver.Preconditioner - Class in gov.nih.mipav.model.algorithms
CeresSolver.Preconditioner.Options - Class in gov.nih.mipav.model.algorithms
CeresSolver.PreconditionerOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.PreconditionerType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.PreprocessedProblem - Class in gov.nih.mipav.model.algorithms
CeresSolver.Preprocessor - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProbeResults - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProblemImpl - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProblemOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProductParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.Program - Class in gov.nih.mipav.model.algorithms
CeresSolver.ProgramEvaluator<EvaluatePreparer,JacobianWriter,JacobianFinalizer> - Class in gov.nih.mipav.model.algorithms
CeresSolver.QuaternionParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.RandomizedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.RandomizedFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.ResidualBlock - Class in gov.nih.mipav.model.algorithms
CeresSolver.ScaledLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurComplementSolver - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurEliminator - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurEliminatorBase - Class in gov.nih.mipav.model.algorithms
CeresSolver.SchurJacobiPreconditioner - Class in gov.nih.mipav.model.algorithms
CeresSolver.ScopedExecutionTimer - Class in gov.nih.mipav.model.algorithms
CeresSolver.ScratchEvaluatePreparer - Class in gov.nih.mipav.model.algorithms
CeresSolver.SizedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.SizeTestingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.SoftLOneLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.Solver - Class in gov.nih.mipav.model.algorithms
CeresSolver.SolverOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.SolverSummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.SparseLinearAlgebraLibraryType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.SparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.SparseMatrixPreconditionerWrapper - Class in gov.nih.mipav.model.algorithms
CeresSolver.StateUpdatingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolver.SteepestDescent - Class in gov.nih.mipav.model.algorithms
CeresSolver.SubsetParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolver.TerminationType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.TestTerm - Class in gov.nih.mipav.model.algorithms
CeresSolver.TolerantLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.TranscendentalCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver.TranscendentalFunctor - Class in gov.nih.mipav.model.algorithms
CeresSolver.TripletSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver.TripletSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrivialLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionMinimizer - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionPreprocessor - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStepEvaluator - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategy - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategyOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategyPerSolveOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategySummary - Class in gov.nih.mipav.model.algorithms
CeresSolver.TrustRegionStrategyType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.TukeyLoss - Class in gov.nih.mipav.model.algorithms
CeresSolver.TypedLinearSolver<MatrixType> - Class in gov.nih.mipav.model.algorithms
CeresSolver.TypedPreconditioner<MatrixType> - Class in gov.nih.mipav.model.algorithms
CeresSolver.VertexDegreeLessThan<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.VertexTotalOrdering<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.VisibilityClusteringType - Enum in gov.nih.mipav.model.algorithms
CeresSolver.WeightedGraph<Vertex> - Class in gov.nih.mipav.model.algorithms
CeresSolver.WolfeLineSearch - Class in gov.nih.mipav.model.algorithms
CeresSolver2 - Class in gov.nih.mipav.model.algorithms: This is a port of the C++ files in ceres-solver-1.14.0 under the BSD license: Ceres Solver - A fast non-linear least squares minimizer Copyright 2015 Google Inc.
CeresSolver2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2
CeresSolver2.BiCubicInterpolator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.BlockRandomAccessSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CanonicalViewsClustering - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CanonicalViewsClusteringOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.ConditionedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CovarianceImpl - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CovarianceOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.CubicInterpolator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.DynamicCompressedRowSparseMatrix - Class in gov.nih.mipav.model.algorithms
CeresSolver2.Grid1D - Class in gov.nih.mipav.model.algorithms
CeresSolver2.Grid2D - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayArrayComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayArrayItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexArrayItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexIntegerdoubleArrayComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexIntegerdoubleArrayItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.indexRowColItem - Class in gov.nih.mipav.model.algorithms
CeresSolver2.RowColLessThanComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.SingleLinkageClusteringOptions - Class in gov.nih.mipav.model.algorithms
CeresSolver2.StorageType - Enum in gov.nih.mipav.model.algorithms
CeresSolver2.Triplet<T,U,V> - Class in gov.nih.mipav.model.algorithms
CeresSolver2.VertexTotalOrderingInteger - Class in gov.nih.mipav.model.algorithms
CeresSolver2.weighted_edgesComparator - Class in gov.nih.mipav.model.algorithms
CeresSolver2.weighted_edgesItem - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
CeresSolverNISTTest.Bennett5CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.BoxBODCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Chiwrut1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Chiwrut2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.DanwoodCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Eckerle4CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.ENSOCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Gauss1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Gauss2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Gauss3CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Hahn1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Kirby2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Lanczos1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Lanczos2CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Lanczos3CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisralaCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisralbCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisralcCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.MisraldCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.NelsonCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Rat42CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Rat43CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.Roszman1CostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverNISTTest.ThurberCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest
CeresSolverTest.AbortingIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BadJacobianCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BadLocalParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BadResidualCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BardFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BealeFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BIGGS_EXP6Function - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BinaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BlockJacobiPreconditionerTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BlockSparseMatrixTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Box3DFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BrownAndDennisFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.BrownBadlyScaledFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.CurveCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.CurveFittingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DenseSparseMatrixTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DestructorCountingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipse - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseCorrectGaussNewtonStep - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedSubspace - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedTraditional - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureEllipseValidSubspaceBasis - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureValley - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DummyCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.DynamicProblem - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.EvaluatorTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.EvaluatorTestOptions - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ExpCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ExpectedEvaluation - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FailingCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FakeIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Fixture - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FreudensteinAndRothFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.FreudensteinAndRothJacobianFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.GaussianFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.GoodCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.GulfResearchAndDevelopmentFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.HelicalValleyFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ImplicitSchurComplementTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.IterativeSchurComplementSolverTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.JennrichAndSampsonFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.KowalikAndOsborneFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.LinearCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.LinearSolverAndEvaluatorCreationTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.LocallyParameterizedCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.MatrixParameterization - Class in gov.nih.mipav.model.algorithms: Helper local parameterization that multiplies the delta vector by the given jacobian and adds it to the parameter.
CeresSolverTest.MeyerFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.MockCostFunctionBase - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.MockCostFunctionBase2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NoJacobianUpdateCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NoOpEvaluationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NoResidualUpdateCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.NumParameterBlocksCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Osborne1Function - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Osborne2Function - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ParameterIgnoringCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ParameterSensitiveCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PartitionedMatrixViewTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PolynomialParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellBadlyScaledFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellEvaluator2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellSingularFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.PowellSingularJacobianFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ProductParameterizationTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticFirstOrderFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.QuadraticTestFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.RegularizationCheckingLinearSolver - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.RememberingCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Rosenbrock - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.Rosenbrock2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.SchurEliminatorTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.SchurOrderingTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.SucceedingIterationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TernaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.TestParameterization - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.ThreeParameterCostFunctorTest - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.UnaryIdentityCostFunction - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback.InnerClass - Class in gov.nih.mipav.model.algorithms
CeresSolverTest.WoodFunction - Class in gov.nih.mipav.model.algorithms
cerOff - Variable in class gov.nih.mipav.model.file.FileJP2
cerOn - Variable in class gov.nih.mipav.model.file.FileJP2
cf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
cfactor - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
cFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver: Buffer size adjustment for color images.
cFactor - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
cFactor - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
cFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection: Used for construction of the preview.
Cfbf - gov.nih.mipav.model.file.MetadataExtractor.FileType
cFFp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
cfft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cFindRq - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: cFind request object.
cFindRsp - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query: CResponse (Find response) object.
CForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CForward: Creates a new CForward object.
CForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CForward: Creates a new CForward object.
cForwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cForwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfrftV2(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfrftV3(double[][][], double, double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfrftV3_precomp(double[][][], double[][][], int, double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate: DOCUMENT ME!
cfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip: DOCUMENT ME!
cfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.cfStop: Creates a new cfStop object.
cfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.cfStop: Creates a new cfStop object.
cftb040(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftb1st(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftbsub(int, double[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf040(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf081(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf082(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf161(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf162(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftf1st(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftfsub(int, double[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftfx41(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftleaf(int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftmdl1(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftmdl2(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftrec1_th(DiscreteSineTransform.cdft_arg_t) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec1_th
cftrec2_th(DiscreteSineTransform.cdft_arg_t) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec2_th
cftrec4(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftrec4_th(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cfttree(int, int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
cftx020(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
CG(double[][][][], int[], double[], int[], double[], boolean, double[][][][], double[][][][], double, int, double[][][][], boolean, double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CG(double[][][], int[], double[], int[], double[], double[][][], double, int, double[][][], boolean, double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
cgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma: This code is a port of the FORTRAN routine CGAMA from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley & Sons, Inc., 1996, pp. 51-52.
CGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Gamma: Compute gamma function or log of gamma function for complex arguments
cgau(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
CGAU - gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
cgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
cgmo(double[][][][], double[], ModelImage, double[], int, int, double, double, String, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: cgmo for color Compute the color gradient at a single scale and multiple orientations
cgmo(double[][][][], double[], ModelImage, double[], int, String, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
cgmo(double[][][], double[], ModelImage, double, int, int, double, String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection: cgmo for black and white Compute the color gradient at a single scale and multiple orientations
cgmo(double[][][], double[], ModelImage, double, int, String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CGNR - gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
CgnrLinearOperator(CeresSolver.LinearOperator, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
CgnrSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CgnrSolver
CGTG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
CGTG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
cgtgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
ch - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
ch - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
ch - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader: The PNG spec states that ISO_8859_1 (Latin-1) encoding should be used for: "tEXt" and "zTXt" chunks, both for keys and values (https://www.w3.org/TR/PNG/#11tEXt) "iCCP" chunks, for the profile name (https://www.w3.org/TR/PNG/#11iCCP) "sPLT" chunks, for the palette name (https://www.w3.org/TR/PNG/#11sPLT) Note that "iTXt" chunks use UTF-8 encoding (https://www.w3.org/TR/PNG/#11iTXt).
ch - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest
ch - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
ch2 - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
chamfer - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer: Algorithm this dialog will call.
chan - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
chan - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: Use serialVersionUID for interoperability.
change_inner_max_epoch(Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
Change2CNumbering(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
changeAll - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions: Whether or not to change all fileinfos/slices.
changeBounds(float, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel: overrides and expands the min/max and or the window/level boundaries of an image based on the transfer function being applied
changeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the action button to change
changed - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver: DOCUMENT ME!
changeDicomFileSize(RandomAccessFile, long, long, int) - Method in class gov.nih.mipav.model.file.FileDicom
changedMode - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove: flag to indicate current mode being changed.
changedMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse: flag to indicate current mode being changed.
changedMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter: flag to indicate current mode being changed.
changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener
changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
changedValues - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X: DOCUMENT ME!
changedValuesBitmap - Variable in class gov.nih.mipav.model.file.FileGESigna4X
changedValuesString - Variable in class gov.nih.mipav.model.file.FileGESigna4X
changeEvent - Variable in class gov.nih.mipav.view.ImageRegistryMonitor: DOCUMENT ME!
changeEvent - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor: DOCUMENT ME!
changeExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelImage: Changes the image dimensionality or extents.
changeFilenameBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
changeIcon(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
changeImageName(String, String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable: Finds an image name in the table and changes it to a new value with the same variable placeholder (does nothing if the value is not in the table).
changeItoJ(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
changeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber: this is the text in the Dialog
changeLAF(String) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
changeMaskNumberDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint: Ref to JDialogChangeMaskNumber
changeMenuEnables() - Method in class gov.nih.mipav.view.ViewJFrameImage: Routine to enable some menu items and disable othter menu items when the dimensionality or type of the image is changed.
ChangeNameDialog(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog: Constructor of change name dialog.
ChangeNameDialog(SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog: Constructor of change name dialog.
changeOrientationOrigin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip: Whether orientation and origin should change with flipping.
changeOrientationOrigin - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip
changePolyMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface: Changes the polygon mode of the selected surface by detaching it, calling the appropriate method, and reattaching it.
changePolyMode(WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM: Changes the polygon mode of the selected surface by detaching it, calling the appropriate method, and reattaching it.
changeRecordingStatus(int) - Method in interface gov.nih.mipav.model.scripting.ScriptRecordingListener: Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
changeRecordingStatus(int) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
changeRecordingStatus(int) - Method in class gov.nih.mipav.view.ViewUserInterface: Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
changeResolutions(ModelImage, float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages: Changes the resolutions of the input image.
changeSaturation(int, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorOperations: Changes the saturation of a color.
changeScriptEditingAbility(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder: Changes whether the current script can be edited by hand (which pauses the script recording while the editing is being done.
changeSize() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView: DOCUMENT ME!
changeToUnsignedInts - Variable in class gov.nih.mipav.model.file.FilePARREC
changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType: DOCUMENT ME!
changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo: DOCUMENT ME!!
changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert: DOCUMENT ME!
changeVOIOrder(boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
channel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
channelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges: DOCUMENT ME!
channelColorsComboBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: corresponding dropdown for each channel image
ChannelComponent(String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent: Creates a new ChannelComponent object.
channelComponentNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent
channelComponents - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: DOCUMENT ME!
channelDataTypes - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
channelDataTypes - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
channelDescription - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelID - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelImages - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay: extraced 3D Model Images from image...red Image is [0], green image is [1], blue image is [2] *
channelImages - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB: extraced 3D Model Images from src image
channelImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay: extraced 3D Model Images from image...red Image is [0], green image is [1], blue image is [2] *
ChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo: Creates a new ChannelInfo object.
channelInfos - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image: DOCUMENT ME!
channelMap - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
channelName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelName0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelName1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelName2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelName3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNameChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
channelNames - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
channelNames - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
channelNumber - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
channelNumber - Variable in class gov.nih.mipav.model.file.FileZVI
channelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator: DOCUMENT ME!
channelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
channels - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
channels - Variable in class gov.nih.mipav.model.file.FileICS: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.file.FileInfoICS: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
channels - Variable in class gov.nih.mipav.model.file.FileTiff
channels - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries: DOCUMENT ME!
channelsFound - Variable in class gov.nih.mipav.model.file.FileInfoCZI
channelWeight - Variable in class gov.nih.mipav.model.file.FileInfoCZI
CHAR - Static variable in class gov.nih.mipav.model.file.FileDM3: DOCUMENT ME!
CHAR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor: DOCUMENT ME!
CharacterAtlas() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
characterCode - Variable in class gov.nih.mipav.model.file.FileSVS
characterCode - Variable in class gov.nih.mipav.model.file.FileTiff
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.view.dialogs.MyXMLHandler: DOCUMENT ME!
characters(char[], int, int) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler: Text data callback from parser.
characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler: DOCUMENT ME!
CHARACTERS - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
CHARACTERS - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters: Character set for instances of ContourPlot.SignedDistanceCharacters.
charField - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
charHeigth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
charLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog: DOCUMENT ME!
Charsets() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Charsets
chartHeight - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartWidth - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartXend - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartXstart - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartYend - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
chartYstart - Variable in class gov.nih.mipav.view.LineMeter: DOCUMENT ME!
charWidth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
chbevl(double, double[], int) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHBEVL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chckbxfine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxForwardsbackwards - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxLeftright - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxRotationRX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxRotationRy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxRotationRz - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chckbxUpdown - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
chder(double, int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
chder(DoubleDouble, int[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
chdtr(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chdtrc(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chdtri(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
CHDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
chebmo - Variable in class gov.nih.mipav.model.algorithms.Integration2: array of dimension (maxp1,25) containing the chebyshev moments
chebmo - Variable in class gov.nih.mipav.model.algorithms.Integration2EP: array of dimension (maxp1,25) containing the chebyshev moments
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.Lmmin
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.LsqFit
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.NESolve
CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
chebzeros(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CHECK - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
CHECK(double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
check_1() - Method in class gov.nih.mipav.model.algorithms.curfit
check_ans(CVODES.NVector, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
check_coefficients(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_coefficients_biorthogonal(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_coefficients_orthogonal(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_divergence(NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
check_gradients - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
check_level(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_momentum_setting(double[], NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
check_perm(String, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
check_reconstruction(PyWavelets.MODE, PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
check_repfnz(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
check_stop_condition(int[], String[], boolean[], NonnegativeMatrixFactorization.info, int, NonnegativeMatrixFactorization.info, NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.stop_opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
check_svd(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet
CHECK1(double, int, int[], int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
CHECK2(double, int, int[], int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
checkAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM: buttons for toolbar *
CheckAllEvaluationCombinations(CeresSolverTest.ExpectedEvaluation) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
checkAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: Selects all the paths in the tree.
checkAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
checkAutosave - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
checkBlurring() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: check the variables of the unsharping-mask panel as they are translated from dialog inputs (ie., JTextFields) to more usable, native types.
checkbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
checkBox - Variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
checkBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
checkBox - Variable in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
checkBox - Variable in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
checkBox25D - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion: DOCUMENT ME!
checkBox25D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion: DOCUMENT ME!
checkBoxArrList - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This is the ArrayList of JCheckBoxes
checkboxBoundingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to display bounding box around VOI
checkboxDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF: DOCUMENT ME!
checkboxDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF: DOCUMENT ME!
CheckBoxEditor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
checkboxEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO: DOCUMENT ME!
checkBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
checkBoxHardSDWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
checkboxIncludeForProcessing - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to include the selected VOI for statistics processing
checkboxLabels - Variable in class gov.nih.mipav.view.JPanelChecklist: must be same size as listLength.
checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
checkboxList - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
checkboxNames - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This is a list of the checkbox names that is used for validation of user input to make sure there are no duplicates
checkboxOpacity - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to display VOI with shading
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
checkboxPanel - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory: DOCUMENT ME!
checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Panel holding statistics options.
checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector: A reference to the JDialogVOIStatistic or JDialogVOIStats check box panel.
CheckBoxRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
checkboxSaveStats - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to save statistics to a file
checkBoxShowLight - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights: Check box to show the light bulb or not.
checkboxVOIName - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats: Whether to display VOI name
checkBoxWienerSDWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
checkBSTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: check border size of the frame, range (0,10).
checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
checkButton - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
checkCalendar(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: To check if the date is a valid date in the calendar.
checkChildren - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories: DOCUMENT ME!
checkDate(int, int, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery: Checks the date to be sure the user didn't enter the start after the end.
checkDimensions - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
CheckDimensions(CeresSolver.ProbeResults, Vector<Integer>, Vector<Integer>, int, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
CHECKED_EVEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
CHECKED_ODD - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkedFileTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This a list is the list of checked check boxes that is populated when user hits apply
checkEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification: From the target 2D slice, compare it with end slices based atlas.
checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt: From the target 2D slice, compare it with end slices based atlas.
checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: From the target 2D slice, compare it with end slices based atlas.
checkEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
checkEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
checkerboardApplied - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
checkerBoardButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder: The button used to enable checker board display of two images.
checkerboardTypesCB - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard: DOCUMENT ME!
checkerboardTypesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
checkerDialog - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Dialog used to set properties of the checkerboard display:(Image A displayed in alternating squares with Image B.
CheckEvaluation(CeresSolver.CostFunction, boolean, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkEvenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkEvenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkFields() - Method in class gov.nih.mipav.view.JPanelEdit: Abstract method notifying the owner if the incorporated fields need to be re-entered.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditAxisOrientation: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditBoolean: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditChar: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditDate: Because DICOM requires 4-digit years, we must check the year field.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditDefault: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditImageOrientation: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditModality: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditOrientation: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditRace: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditSetOrParam: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditSex: method does nothing in this class.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditTime: If owner were to check, this panel always checks out fine.
checkFields() - Method in class gov.nih.mipav.view.JPanelEditValueType: There is nothing to check in this Panel.
checkFields() - Method in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
checkForActiveVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
checkForActiveVOIs() - Method in class gov.nih.mipav.view.ViewJFrameImage
CheckForDuplicates(Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
CheckForPairDuplicates(Vector<CeresSolver.Pair<double[], double[]>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
checkFrontEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
checkGSTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: checks the settings of grid size controls.
checkHeapMaxAgainstPreferences() - Method in class gov.nih.mipav.view.ViewUserInterface: Test for VM memory sizes being the same as last run in preferences: displays a user-warning that the preferences & VM config files disagree and presents the JDialogMemoryAllocation dialog with "use preference" buttons to quicken the matching process.
checkIfNeedCalibration() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
checkIfSpaceNavNeedsCalibration() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
checkIfSpaceNavNeedsCalibration() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject: Checks the dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: Checks the color and dimensionality of the new image vs. the original source image.
checkImage(ModelImage, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage: Checks that the two input images match extents, units of measure and resolutions.
checkImages - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice: DOCUMENT ME!
checkIncrementTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: check border size of the frame, range (0,10).
checkInput(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
CheckIntPairToLong(int, int, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: boolean array mirroring checkbox panel's selection.
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM: VOI properties check list.
checkListExtract - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkListInsert - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices: Array of length totalSlices, false where slice is already present, true where slice must be inserted.
checkListRemove - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkListRemove - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices: DOCUMENT ME!
CheckLongToIntPair(String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkMagicNumber() - Method in class gov.nih.mipav.model.file.FileGESigna5X: DOCUMENT ME!
CheckManifold() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
checkMaxSlice(FileDicomTagTable, int, TreeSet<Integer>) - Method in class gov.nih.mipav.model.file.FileDicom: Helper method for enhanced dicom which finds the maximum slice number in the dataset.
checkMeshPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: Check that the currently loaded proxy geometry is the default cube, if it is not reload it onto the GPU.
checkMinimum(AlgorithmConstrainedELSUNCOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D: Check if the given minimum is within the translation and rotation bounds.
checkMinimum(AlgorithmConstrainedOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D: Check if the given minimum is within the translation and rotation bounds.
checkName(String, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
checkOddButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes: DOCUMENT ME!
checkOddButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices: DOCUMENT ME!
checkOnEdge(ModelTriangleMesh, Point3f, int[], Vector3f, TexCoord3f, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: Given a point which is known to be inside a triangle, and that triangle, this function determines which edge, if any, that point falls on.
checkOnEdge(TriMesh, Vector3f, int[], Vector3f, Vector3f, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: Given a point which is known to be inside a triangle, and that triangle, this function determines which edge, if any, that point falls on.
checkOnFrameClose - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions: DOCUMENT ME!
checkOptionInStr(String, String) - Method in class gov.nih.mipav.model.algorithms.libdt
checkOrigins - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages: DOCUMENT ME!
CheckParams(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
checkParentDir(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
checkParentDir(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData: Creates the parent directory for the output images and data created by worm segmentation and untwisting:
checkPixelProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
checkPixelProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup: DOCUMENT ME!
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin: Checks whether the popup should be called
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt: DOCUMENT ME!
checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI: DOCUMENT ME!
checkPositiveIntegers(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
checkPrefDirCommand(String[], int) - Static method in class gov.nih.mipav.view.ViewUserInterface: If the preferences name command is about to be performed before an existing preferences directory command, this guarantees that the directory command will be executed first.
checkPreference(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes: This method does the check with the preferencesFileTypes array to determine if the checkbox should be checked initalially
checkProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect
checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT: Check to see if the position of the mouse is close to one of the points in the LUT transfer function or the line drawn in between the points.
checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB: DOCUMENT ME!
checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase: Check to see if the position of the mouse is close to one of the points in the LUT transfer function or the line drawn in between the points.
checkRCTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox: checks the settings of light box row/column controls.
CheckRotationMatrixToAngleAxisRoundTrip(double, double, double, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
checkSave - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: DOCUMENT ME!
checkSeamCells(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
checkShow - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Check box for whether to display files that are not likely sources of MIPAV plugins
checkSide(Vector3f) - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
checkSiemens - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
checkSiemens3d() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
checkSize() - Method in class gov.nih.mipav.model.structures.TransferFunction: Checks the size of the point array to make sure it is big enough.
checkStatus() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
checkstop(double[][], double[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
checkstop(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
checkSum - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X: 54 - 16 bit end around carry sum of pixels **** (read as unsigned short).
checkTag(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom: Checks the text field data for the proper format.
checkText(JTextField, double, double) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: verify that the numeric value of the text of the submitted JTextField is between a and b.
checkText(JTextField, float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: verify that the numeric value of the text of the submitted JTextField is between a and b.
checkThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint: handling of intensity threshold.
checkTree - Variable in class gov.nih.mipav.view.JPanelAnonymizePrivateTags: The checkbox tree version of the tree in the panel.
checkTree - Variable in class gov.nih.mipav.view.JPanelAnonymizePublicTags
CheckTreeCellRenderer(TreeCellRenderer, CheckTreeManager.CheckTreeSelectionModel) - Constructor for class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
CheckTreeManager - Class in gov.nih.mipav.view
CheckTreeManager(JTree) - Constructor for class gov.nih.mipav.view.CheckTreeManager
CheckTreeManager.CheckTreeCellRenderer - Class in gov.nih.mipav.view
CheckTreeManager.CheckTreeSelectionModel - Class in gov.nih.mipav.view
CheckTreeSelectionModel(TreeModel) - Constructor for class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
checkUnorderedVariables(StochasticForests.Data, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
checkUnpack - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin: Check box for unpacking container files
checkUnsharping() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization: check the variables of the unsharping-mask panel as they are translated from dialog inputs (ie., JTextFields) to more usable, native types.
CheckValueAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction
CheckValueAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction
checkValues() - Method in class gov.nih.mipav.model.algorithms.libdt.PatchOptions
CheckViewIntersection(Renderer, Culler) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast: The volume data is rendered with a fragment (pixel) shader on the GPU.
CHESHIRE - Static variable in class gov.nih.mipav.model.file.FileUtility: Cheshire file type (a kind of Analyze). extension: .imc Can also have .img extension
CHESHIRE_OVERLAY - Static variable in class gov.nih.mipav.model.file.FileUtility: Cheshire overlay file type.
chf - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
chgubi(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chguit(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chgul(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chgus(int[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
chi - Variable in class gov.nih.mipav.model.algorithms.Cephes
CHI - Variable in class gov.nih.mipav.model.algorithms.NelderMead
CHI_SQUARED_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
CHI_SQUARED_INVERSE_CUMULATIVE_DISTRIBUTION_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
CHI_SQUARED_PROBABILITY_DENSITY_FUNCTION - Static variable in class gov.nih.mipav.model.algorithms.Statistics
chi2_cutoff(int, double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
child_nodeIDs - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
childDir(File) - Method in class gov.nih.mipav.model.file.FileBRUKER: Returns an ArrayList of all the names of subdirectories of the directory denoted by currentDir.
ChildOverlap(int, int, int, int, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
children - Variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
children - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
children() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.JFileTreeNode
childTagTables - Variable in class gov.nih.mipav.model.file.FileDicomTagTable: A list of tag tables which point to this as their reference tag table.
chInterpType - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
chInterpType - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
ChirpZ(double[][], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
ChirpZTransform - Class in gov.nih.mipav.model.algorithms.filters
ChirpZTransform() - Constructor for class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
ChirpZTransform(double[][], double[][], int, double[], double[], boolean, String, String, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
chisq - Variable in class gov.nih.mipav.model.algorithms.NLFittedFunction: Total error as X^2
chiSquared - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
chiSquared - Variable in class gov.nih.mipav.model.algorithms.NESolve
chiSquaredCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
chiSquaredInverseCumulativeDistributionFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
chiSquaredProbabilityDensityFunction() - Method in class gov.nih.mipav.model.algorithms.Statistics
Chiwrut1CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut1CostFunction
Chiwrut1Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Chiwrut1Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Chiwrut2CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Chiwrut2CostFunction
Chiwrut2Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
Chiwrut2Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
chkForceUBYTE - Variable in class gov.nih.mipav.view.ViewOpenImageSequence: DOCUMENT ME!
chkMultiFile(int, boolean) - Static method in class gov.nih.mipav.model.file.FileIO: Sets specific types to be multifile based on the input argument.
chkSave - Variable in class gov.nih.mipav.view.ViewFileChooserSubsample: DOCUMENT ME!
chkShowTalairachGrid - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: "Show talairach grid" checkbox.
chkShowTalairachGridMarkers - Variable in class gov.nih.mipav.view.ViewJFrameTriImage: "Show talairach gridmarkers" checkbox.
chkUnchkPanel - Variable in class gov.nih.mipav.view.JPanelChecklist: DOCUMENT ME!
CHKXER(String, int[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
choiceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed: DOCUMENT ME!
cholproj(double[][], boolean[]) - Method in class gov.nih.mipav.model.algorithms.Fastfit
choose(double, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine: DOCUMENT ME!
choose(DoubleDouble, DoubleDouble[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP: DOCUMENT ME!
chooseDirectory(String) - Method in class gov.nih.mipav.view.ViewDirectoryChooser: Shows the file dialogs with the given directory as the default.
chooseGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
choosePoints - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
choosePoints - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
chooser - Variable in class gov.nih.mipav.view.dialogs.InstanceVOI
chooser - Variable in class gov.nih.mipav.view.dialogs.JDialogGridOptions: DOCUMENT ME!
chooser - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
chooser - Variable in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
chooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.InstanceVOI
chooser - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
chooser - Variable in class gov.nih.mipav.view.ViewFileChooserBase: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline: DOCUMENT ME!
chooserButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
chooserButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractObject: DOCUMENT ME!
chooserButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough: DOCUMENT ME!
chooserButton2 - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency: DOCUMENT ME!
chosenFile - Variable in class gov.nih.mipav.view.JPanelFileSelection: DOCUMENT ME!
chPrev - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
cHRM - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
chunk - Variable in class gov.nih.mipav.model.structures.IntVector: The number of elements to add to the total number allocated when more space is needed to store the data in the vector.
chunk - Variable in class gov.nih.mipav.model.structures.PointStack: DOCUMENT ME!
Chunk() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Chunk
chunk_outer_product_buffer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
ChunkDiagonalBlockAndGradient(CeresSolver.Chunk, CeresSolver.BlockSparseMatrix, double[], int, double[][], double[], double[], CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
ChunkOuterProduct(int, CeresSolver.CompressedRowBlockStructure, double[][], double[], HashMap<Integer, Integer>, CeresSolver.BlockRandomAccessMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
chunks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
chunky - Variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
chunky - Variable in class gov.nih.mipav.model.file.FileSTK: DOCUMENT ME!
chunky - Variable in class gov.nih.mipav.model.file.FileSVS: DOCUMENT ME!
chunky - Variable in class gov.nih.mipav.model.file.FileTiff: DOCUMENT ME!
ci - Variable in class gov.nih.mipav.model.algorithms.Cephes
Ci() - Method in class gov.nih.mipav.util.DoubleDouble
CIELabButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
CIELabButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
cieLabImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
CIELABSpace - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
CIELABtoRGB(float[]) - Method in class gov.nih.mipav.model.file.FileSVS
CIELABtoRGB(float[]) - Method in class gov.nih.mipav.model.file.FileTiff
cimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
cimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
cImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
cine(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: Loops through the images and displays them.
cineRate - Variable in class gov.nih.mipav.model.file.FileInfoMedVision: DOCUMENT ME!
cinfo - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
cinfo - Variable in class gov.nih.mipav.model.file.libjpeg
CINRAD(int, int, int, int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
Circle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
Circle - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Current three types of widget:
CIRCLE - gov.nih.mipav.view.dialogs.JDialogZoom.ZoomMode
CIRCLE - Static variable in class gov.nih.mipav.model.file.FileInfoLSM: DOCUMENT ME!
CIRCLE - Static variable in class gov.nih.mipav.model.file.FileLSM: DOCUMENT ME!
CIRCLE - Static variable in class gov.nih.mipav.model.structures.VOIBase
CIRCLE - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
CIRCLE_2D - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP: DOCUMENT ME!
CIRCLE_2D - Static variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
Circle2f() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPrimitive.Circle2f
circleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP: DOCUMENT ME!
circleButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls: Buttons for selecting magnifying shape.
CircleClassificationWidget - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: Creates the circle widget for the multi-histogram interface.
CircleClassificationWidget(int, int, Vector2f, Vector2f, Texture, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.CircleClassificationWidget
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D: DOCUMENT ME!
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: kernel diameter.
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D: DOCUMENT ME!
circleDiameter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: kernel diameter.
circleDiameterErode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D: Erosion kernel diameter.
circleDiameterErode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D: Erosion kernel diameter.
circleImage - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
circleRadius - Variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency.sixItems
CircleUtil - Class in gov.nih.mipav.util: Public utility class for generating approximations to circles and spheres.
CircleUtil() - Constructor for class gov.nih.mipav.util.CircleUtil
circshift(double[], int) - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
circularButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
circularity - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
circularityDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
cisia(DoubleDouble, DoubleDouble, DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble: This is a port of subroutine CISIA which computes cosine and sine integrals from Computation of Special Functions by Shanjie Zhang and Jianming Jin.
city - Variable in class gov.nih.mipav.model.file.FileInfoCZI
CITY_BLOCK - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
CITY_BLOCK - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
cityBlock - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
cityBlock() - Method in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
CJACSU(double[], int, double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
ck_eta - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_etamax - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_gammap - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_h - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_hprime - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_hscale - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_l - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_L - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_mem - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
ck_next - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_Ns - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_nst - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_q - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_qprime - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_quadr - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_quadr_sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_qwait - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_saved_tq5 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_sensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_t0 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_t1 - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_tau - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_tq - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_tretlast - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_zn - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_znQ - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_znQS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_znS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ck_zqm - Variable in class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
cki - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
CkpntMemRec() - Constructor for class gov.nih.mipav.model.algorithms.CVODES.CkpntMemRec
ckr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral: DOCUMENT ME!
ckr2allRegular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Second order classic kernel regression function for regularly sampled data
ckr2Irregular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckr2IrregularCIELab() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckr2L1Regular() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression: Second order classic kernel regression function with L1-norm for regularly sampled data
ckr2Regular(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckr2RegularCIELab(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
ckrinfo - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
ckrinfo_t() - Constructor for class gov.nih.mipav.model.structures.jama.METIS.ckrinfo_t
cl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
cl - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
cl - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
cl - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
cl - Variable in enum gov.nih.mipav.view.ViewJFrameGraph.FitMode
CL_data() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.CL_data
cl_image - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
cl_lrb - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
cl_valid - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Image
cLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
CLag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform: DOCUMENT ME!
clamp - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clamp - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clamp(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Clamps value between specified bounds
clamp(float, float, float) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Clamps value between specified bounds
clamp(int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnakeNode
clamp(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ExtentionMath
clamp(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.Utils: Clamps value between specified bounds
clamp(int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
Clamp(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector: Clamps the vector to [min,max].
CLAMP(int, int, int) - Method in class gov.nih.mipav.model.file.FileJPEG2000
clamp_0_1(double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot: Clamps a value to the range [0.0, 1.0].
clamp_0_255(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot: Clamps a value to the range [0,255].
clampCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clamped - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE: Perform a "contrast limited" AHE.
clampImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampingIsNecessary - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal: perform a "contrast limited" AHE.
clampingValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clampNormalizedPathDistance(float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior: Clamp the input normalized path distance to the range [0,1].
clampNormalizedPathDistance(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM: Clamp the input normalized path distance to the range [0,1].
clampNormalizedPathDistance(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
clampValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
clampValueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE: DOCUMENT ME!
clampValueText - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal: DOCUMENT ME!
CLASS - Static variable in class gov.nih.mipav.view.ViewImageFileFilter: Class Files (*.class).
CLASS(int, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
class_id - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
class_id - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
class_max - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
class_min - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: DOCUMENT ME!
class_number - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
class_number - Variable in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment: Use serialVersionUID for interoperability.
class_state - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
class_values - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
class_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1_corner - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1_lowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class1_weak - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
Class3 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
CLASS3_HIGH_INTEN - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
Class3_LowInten - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.RegionPattern
classAdd(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
classAdd(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
classConsistencyCheck(int, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
ClassData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassData
classes - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
classicStepSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
classicStepSize - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
classification(C_AAMMODEL, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Classification testing routine.
classification(C_AAMMODEL, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE: Classification testing routine.
classification_table - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
classificationImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain: classification image to hold the SVM readable features.
classificationImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
classificationImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
classificationImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
ClassificationWidget - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: This is the base class for the Multi-histogram widgets.
ClassificationWidget() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Default Constructor
ClassificationWidget(ClassificationWidget) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Copy Constructor.
ClassificationWidget(Vector2f, Vector2f, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget: Create a new ClassificationWidget.
ClassificationWidgetEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: This class sets up and communicates with the GLSL shader program used to render the interior of the widget in the multi-histogram panel.
ClassificationWidgetEffect(Texture, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect: Creates a new ClassificationWidgetEffect with the texture specified.
ClassificationWidgetState - Class in gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer: This class stores the information needed for calculating how the multi-histogram is applied to the volume to create the rendered image.
ClassificationWidgetState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState: Default Constructor:
classify - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Feature
classify - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.Features
classify - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.FeaturesSVM
classify() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
classLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
ClassLogLikelihood(double[], double[], AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
ClassLogLikelihood_init(AlgorithmGaussianMixtureModelEM.SigSet) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
className - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
classnum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
classNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: DOCUMENT ME!
classNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
ClassSelectorPanel() - Constructor for class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
ClassSig() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
ClassStateStruct() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.ClassStateStruct
classText - Variable in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
ClassType() - Constructor for enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64.ClassType
ClassType() - Constructor for enum gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees.ClassType
classUID - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Store: Class UID.
CLEAN_FAX_DATA - Static variable in class gov.nih.mipav.model.file.FileSVS
CLEAN_FAX_DATA - Static variable in class gov.nih.mipav.model.file.FileTiff
cleanBuffer(int) - Method in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
cleanData() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
cleanFaxData - Variable in class gov.nih.mipav.model.file.FileSVS
cleanFaxData - Variable in class gov.nih.mipav.model.file.FileTiff
cleanImageB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: DOCUMENT ME!
cleanImageBufferA - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer used to store ARGB images of the image presently being displayed.
cleanImageBufferB - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
cleanImageBufferB - Variable in class gov.nih.mipav.view.ViewJComponentEditImage: Buffer used to store ARGB images of the image presently being displayed.
cleanLine(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Removes points (vectors) that form sharp angles (i.e. smoothes boudnary) Also adds points separated by some distance and removes adjacent points
cleanLine(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake: Removes points (vectors) that form sharp angles (i.e. smoothes boudnary) Also adds points separated by some distance and removes adjacent points
cleanLine(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
cleanLine(float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
cleanMouseRecorder() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender: Clean mouse recorder for any existing event items.
cleanMouseRecorder() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView: Clean mouse recorder for any existing event items.
cleanPrunedModes() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
cleanSelected() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
cleanup() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF: Sets structures to null.
cleanup() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF: Sets the structures to null.
cleanup() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D: cleanup
cleanup() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D: cleanup
cleanup() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D: cleanup
cleanup() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
cleanup() - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching: DOCUMENT ME!
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans: Cleans up the memory usage.
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction: Prepares this class for destruction.
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet: DOCUMENT ME!
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion: DOCUMENT ME!
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution: Dispose of temporary images after the deconvolution process is completed:
cleanUp() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans: Cleans up the memory usage.
cleanUp() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
cleanUp() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.ModelTriangleMeshCurveSegments: Delete all member variables needed for the mesh segmentation, but not needed for getTriangleArrayIndices.
cleanUp() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic: cleanUp deletes the data stuctures used for the Dijkstra's search, but does not delete the array of points on the Geodesic curve.
cleanUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM: cleanUp deletes the data stuctures used for the Dijkstra's search, but does not delete the array of points on the Geodesic curve.
cleanUp() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
cleanup_Affine(SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Gauss_filter(SIFT3D.Gauss_filter) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_GSS_filters(SIFT3D.GSS_filters) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Keypoint_store(SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Mat_rm(SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Mesh(SIFT3D.Mesh) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Pyramid(SIFT3D.Pyramid) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Reg_SIFT3D(SIFT3D.Reg_SIFT3D) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Sep_FIR_filter(SIFT3D.Sep_FIR_filter) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_SIFT3D(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_SIFT3D_Descriptor_store(SIFT3D.SIFT3D_Descriptor_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanup_Slab(SIFT3D.Slab) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
cleanUpAndDispose() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance: Clean up some things done by the dialog which may affect other parts of MIPAV.
cleanUpAndDispose() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations: Clean up some things done by the dialog which may affect other parts of MIPAV.
cleanUpAndDispose() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics: Clean up some things done by the dialog which may affect other parts of MIPAV.
cleanupAndExit() - Method in class gov.nih.mipav.view.ViewUserInterface
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
cleanUpInternal() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability