Index
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form
A
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
-
DOCUMENT ME!
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
- a - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- a - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Input parameter
- a - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
- a - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
- a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility
-
DOCUMENT ME!
- a - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
-
DOCUMENT ME!
- a - Variable in class gov.nih.mipav.model.algorithms.Gamma
- a - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric
-
Input parameter
- a - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
- a - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
- a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
- a - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
On completion if exitStatus >= 0 a[] contains the latest (best) estimate of the solution point.
- a - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
- a - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
- a - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_edge
- a - Variable in class gov.nih.mipav.model.structures.Voro.wall_ellipsoid
- a - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- a - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
- a - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
- a - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
- a() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- a(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
- a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- a(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- A - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
- A - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
- A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
- A - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
- A - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
- A - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVDlsMemRec
- A - Variable in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
- A - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex
-
invalid input: '<' observation mean
- A - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
- A - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Affine
- A - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedInverse2
- A - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- A - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.TestRun
- A() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ScaledLoss
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
- a_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
- a_ - Variable in class gov.nih.mipav.model.file.charls.regular_mode_context
- a_ - Variable in class gov.nih.mipav.model.file.charls.run_mode_context
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
- A_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.PartitionedMatrixViewTest
- A_array - Variable in class gov.nih.mipav.model.algorithms.dataStruct
- a_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- a_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase
-
Returns the alpha value of this pixel at its current position.
- a_cal - Variable in class gov.nih.mipav.model.structures.Voro.wall_ellipsoid
- A_CLIPSLICE - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentBoxSlice
-
This is an x clip slice.
- a_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
- A_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- A_nfmt - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
- a_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
- a_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- a_offset - Variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
- a_squared_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TukeyLoss
- a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- a0 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
- a0 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
- a0Array - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
- a0Num - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
- a0Num - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
- a1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
- a1 - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
- a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- a1 - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
- A1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- a11 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
-
invalid input: '<' center y-coordinate
- a11 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- a12 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
-
invalid input: '<'
- a12 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- a13 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- A1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- a1div3 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- a21 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
- a22 - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedEllipse
- a22 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- a23 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- a33 - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- a4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- a7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- aa - Variable in class gov.nih.mipav.model.structures.Voro.wall_ellipsoid
- aa_inv - Variable in class gov.nih.mipav.model.structures.Voro.wall_ellipsoid
- aaAccurateSmoothing - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
- AABB_AABB(ComputationalGeometry.AABB2, ComputationalGeometry.AABB2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._Intersections
- AABB2(double, double, double, double) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.AABB2
- AABB2(ArrayList<ComputationalGeometry.MyVector2>) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.AABB2
- AABB3(ComputationalGeometry.Bounds) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.AABB3
- AABB3(ArrayList<ComputationalGeometry.MyVector3>) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.AABB3
- aaButton - Variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
- Aac - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
- AAM_MAX2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
-
define the max function with two given double values.
- AAM_MAX3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
-
define the max function for three given double values.
- AAM_MIN2(double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
-
define the min function for two given double values.
- AAM_MIN3(double, double, double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
-
define the min function for three given double values.
- aam_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
- aaMask - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
- aamc - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education.
- aamc() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.aamc
- aamClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
- AAMdef - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- AAMdef() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
- aamGroupRename() - Method in class gov.nih.mipav.view.ViewJFrameImage
- aamGroups() - Method in class gov.nih.mipav.view.ViewJFrameImage
- AAMinitialization() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
Atlas based AAM segmentation.
- AAMLoadAnalyzerSynthesizer(DataInputStream, CAAMReferenceFrame) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
-
Analyzer/Synthesizer loader.
- AAMLoadTransferFunction(DataInputStream, CAAMModel) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction
-
The function loads a transfer function from a stream, instantiates the correct concrete class and returns a base class pointer.
- aamMLClassification() - Method in class gov.nih.mipav.view.ViewJFrameImage
- AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase.ImageAttributes
- AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile.ImageAttributes
- AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase.ImageAttributes
- AAMName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase.ImageAttributes
- AAMRound(double) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
-
Round up function
- aaPatch - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
- aaPatchX - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
- aaPatchY - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
- aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- aArray - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- ab - Variable in class gov.nih.mipav.model.file.jxlatte.ChebyschevApproximation
- abbrev - Variable in enum gov.nih.mipav.model.file.FileInfoBase.Unit
- abbreviated_format_and_spiff_header_mismatch - Enum constant in enum gov.nih.mipav.model.file.charls.jpegls_errc
- abbreviated_format_mapping_table_count_after_read_header() - Method in class gov.nih.mipav.model.file.charls
- abbreviated_image_data - Enum constant in enum gov.nih.mipav.model.file.charls.compressed_data_format
- abbreviated_table_specification - Enum constant in enum gov.nih.mipav.model.file.charls.compressed_data_format
- abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCT
-
Preset labels.
- abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT
-
Preset labels.
- abdomenLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Preset labels.
- abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCT
-
Preset min, max values.
- abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT
-
Preset min, max values.
- abdomenMax - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Preset min, max values.
- abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCT
-
Preset min, max values.
- abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT
-
Preset min, max values.
- abdomenMin - Variable in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Preset min, max values.
- abort - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
-
If true stop processing.
- abort() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Aborts an association and closes the socket.
- AbortingIterationCallback() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.AbortingIterationCallback
- abortRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Abort connection request.
- about() - Method in class gov.nih.mipav.view.ViewJFrameImage
-
Makes an aboutDialog box and displays information of the image plane presently being displayed.
- about() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Creates simple dialog that describes basic info about MIPAV, with MIPAV as the title.
- about(int, int) - Method in class gov.nih.mipav.view.ViewJFrameBase
-
Makes an aboutDialog box that displays information about the image slice.
- about(String, String) - Method in class gov.nih.mipav.view.ViewUserInterface
-
Creates a fairly simple plain-text viewing box.
- ABOUT_MIPAV - Static variable in class gov.nih.mipav.view.dialogs.JDialogBase
-
Access about mipav panel
- aboutDataProvenance() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Displays the system data provenance using a simple dialog with table and jtextarea (for current selection).
- aboutJava() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Creates simple dialog that describes basic info about the version of Java.
- aboutPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
- above - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.ControlNode
- ABOVE - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
- aboveMedian - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
-
factor above median at which edge values are taken to zero.
- aboveMedian - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain
-
The factor above which second stage edge erosion occurs.
- abs() - Method in class gov.nih.mipav.util.DoubleDouble
-
Returns the absolute value of this value.
- abs(jxlatte.Point) - Method in class gov.nih.mipav.model.file.jxlatte.Point
- Abs() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Takes the absolute valueof each element.
- abs1(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
- ABS1(SuperLU.doublecomplex) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
- Abs2Rel(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Converts shape coordinates from absolute to relative.
- Abs2Rel(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Converts shape coordinates from absolute to relative by using the hostimage.
- absBiggest(double, double, double) - Method in class gov.nih.mipav.model.file.FileIO
-
Helper method for finding biggest (absolute value) of three numbers.
- absButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- abscissa - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2
-
DOCUMENT ME!
- abscissa - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2
-
abscissa of convergence of the Laplace transform.
- absEps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConModel2
-
DOCUMENT ME!
- absEps - Variable in class gov.nih.mipav.model.algorithms.InverseLaplace2
-
absolute accuracy requested.
- abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
- abserr - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
Estimate of the absolute value of the error, which should equal or exceed abs(actual integral - result).
- abserr - Variable in class gov.nih.mipav.model.algorithms.ODE
- abserr - Variable in class gov.nih.mipav.model.algorithms.ODEEP
- absGtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- absGw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- absHtw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- absHw - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- absMinThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
pixel does not get remapped when pixel is below threshold.
- ABSOLUTE_VALUE - Enum constant in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
- ABSOLUTE_VALUE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
DOCUMENT ME!
- absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
- absoluteConvergence - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
absolute convergence constant Used to test for convergence by the sum of squares being less than the absoluteConvergence squared.
- absoluteGoTo() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Method that goes to the absolute voxel coordinate that is entered
- absoluteGoToButton - Variable in class gov.nih.mipav.view.ViewJFrameBase
- absoluteGoToPanel - Variable in class gov.nih.mipav.view.ViewJFrameBase
- absoluteLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
-
Labels for the current absolute position:.
- absoluteLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
Labels for the current absolute position:.
- absoluteLabelVals - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
-
Labels for the current absolute position values:.
- absoluteLabelVals - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
Labels for the current absolute position values:.
- absolutePanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
-
JPanel containing the absoulte position labels:.
- absolutePanel - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
JPanel containing the absoulte position labels:.
- absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation
-
total number of voxels at a particular nonzero level.
- absoluteTrue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation
-
total number of id voxels in true image.
- absoluteValue(int, float[]) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage
-
absolute value
- absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileAnalyze
-
Take the absolute value of image.
- absoluteValue(ModelImage) - Method in class gov.nih.mipav.model.file.FileNIFTI
-
Absolute value of image.
- absoluteWindowLevelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
- absoluteXLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
voxel absolute goto components*
- absoluteXTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
- absoluteYLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
voxel absolute goto components*
- absoluteYTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
- absoluteZLabel - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
voxel absolute goto components*
- absoluteZTextField - Variable in class gov.nih.mipav.view.ViewJFrameBase
- abssq(double[]) - Method in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
- absstp - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
- absSyntax - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext
-
Abstract syntax object.
- abstol - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
- abstol - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
- aButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- ac - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
- ac - Variable in class gov.nih.mipav.model.structures.Voro.wall_plane
- AC - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.HuffmanTablesDirectory.HuffmanTable.HuffmanTableClass
- ac_cur_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
- ac_derived_tbl - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
- ac_derived_tbls - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
- ac_huff_tbl - Variable in class gov.nih.mipav.model.file.libxl.jpeg_common_struct
- ac_huff_tbl_ptrs - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- AC_STAT_BINS - Static variable in class gov.nih.mipav.model.file.libjpeg
- ac_stats - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
- ac_tbl_no - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_component_info
- ac1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ac9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- acc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserFilt
- acc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
- acc_online_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ACC_ONLINE_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- accel - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- accept(File) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt
-
FileFilter override.
- accept(File) - Method in class gov.nih.mipav.view.ViewImageFileFilter
-
One of the overrides to FileFilter.
- accept(String) - Method in class gov.nih.mipav.view.ViewImageFileFilter
-
Checks if extension matches what is accepted for the filter type.
- accept(T) - Method in interface gov.nih.mipav.model.file.jxlatte.ExceptionalConsumer
- acceptedChars - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter
-
DOCUMENT ME!
- acceptedSocket - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
-
Socket used to receive the data.
- acceptorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- acceptorImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency
-
DOCUMENT ME!
- acceptorImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- acceptorRun - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough
-
If acceptorRun is true, run on 3 images with acceptor dye only.
- acceptorRun - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- access_virt_barray(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_barray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
- access_virt_sarray8(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
- access_virt_sarray9to12(libjpeg.jpeg_decompress_struct, libjpeg.jvirt_sarray_control, int, int, boolean) - Method in class gov.nih.mipav.model.file.libjpeg
- accessionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- accessLock - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
- accessoryPanel - Variable in class gov.nih.mipav.view.ViewFileChooserBase
-
DOCUMENT ME!
- accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
permits the caller to get a value out of the primary table by using the name given to the fileInfo.
- accessPrimaryData(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
permits the caller to get a value out of the primary table by using the name given to the fileInfo.
- accumulate - Variable in class gov.nih.mipav.model.algorithms.SVM
- accumulate_hom - Variable in class gov.nih.mipav.model.algorithms.SVM
- accumulated_candidate_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
- accumulated_reference_model_cost_change_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
- accumulateFn - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
- accumulateFunction(int, SVM.VlSvmDataset, int, double[], double) - Method in class gov.nih.mipav.model.algorithms.SVM
- accur() - Constructor for class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.accur
- accuracy - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
- aCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- aCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- acheck(LSQR.lsqr_solver_ez, int, int, RandomAccessFile, double, double[], double[], double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.LSQR
-
!
- acins - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- acins - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- ackleyNum - Variable in class gov.nih.mipav.model.algorithms.NelderMead
- AclipPlanePts - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Arbitrary clipping plane four corners points.
- aClipVisible - Variable in class gov.nih.mipav.view.renderer.SceneState
-
Boolean visibility values for x, y, z, arbitrary clipping slider frames.
- ACOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- ACOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- acos() - Method in class gov.nih.mipav.util.DoubleDouble
-
For all -1 invalid input: '<' x invalid input: '<' 1, arccos(x) = PI/2 - arcsin(x)
- ACPC_ANTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
acpc constants.
- ACPC_INFERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
acpc constants.
- ACPC_LATERAL - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
acpc constants.
- ACPC_POSTERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
acpc constants.
- ACPC_SUPERIOR - Static variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
acpc constants.
- ACPC_TO_ORIG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
DOCUMENT ME!
- ACPC_TO_ORIG - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
DOCUMENT ME!
- ACPC_TO_TLRC - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
DOCUMENT ME!
- ACPC_TO_TLRC - Static variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
DOCUMENT ME!
- acpcAC - Variable in class gov.nih.mipav.model.file.FileAfni
-
Anterior Comissure in acpc space.
- acpcAC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Anterior Comissure in acpc space.
- acpcACFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- acpcDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcDim - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Image dimensions.
- acpcDimFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- ACPCGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
- acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ACPCImage - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
- acpcMax - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- acpcMax - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
ACPC min and max extents of the brain.
- acpcMaxCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- acpcMaxFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- acpcMaxPt - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- acpcMin - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- acpcMin - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
ACPC min and max extents of the brain.
- acpcMinCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- acpcMinFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
TLRC Specific info.
- acpcMinPt - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- acpcName - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- acpcPC - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- acpcPC - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- acpcPC - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Posterior Comissure in acpc space.
- acpcPC - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcPCCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- acpcPCFields - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- acpcRes - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- acpcRes - Variable in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Voxel resolution (cubic).
- acpcRes - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcResField - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- acpcResLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcResOrg - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcResPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcResText - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- acpcToOrig(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Transforms point from acpc to orig...matrix is implicitly inverted in code.
- acpcToOrig(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Transforms point from acpc to orig...matrix is implicitly inverted in code.
- acpcToTlrc(int, int, int, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Transforms point from acpc to tlrc.
- acpcToTlrc(Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.TalairachTransformInfo
-
Transforms point from acpc to tlrc.
- acqGradMat - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
- acquiredCardiacCycles - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- acquiredCardiacCyclesIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- acquiredStudyDuration - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- acquiredStudyDurationIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- acquisitionBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- AcquisitionDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- AcquisitionDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- AcquisitionDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- acquisitionDuration - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- acquisitionMatrix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- acquisitionMode - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- AcquisitionNumber - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- acquisitionOrientationField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
-
textfields
- acquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- AcquisitionTime - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- AcquisitionTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- AcquisitionTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- AcquisitionTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- ACSP - Variable in class gov.nih.mipav.model.file.jxlatte.ImageHeader
- actInt(double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
-
DOCUMENT ME!
- action - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.ParallelForEachExecutor
- action - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry
-
action describing the event
- action - Variable in class gov.nih.mipav.model.scripting.ParsedActionLine
-
The String representing the action which should be taken when this line is executed.
- action - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
- action - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction
-
Current notes for the node.
- ActionAdapter() - Constructor for class gov.nih.mipav.view.MipavUtil.ActionAdapter
-
Creates a new ActionAdapter object.
- ActionBase - Class in gov.nih.mipav.model.scripting.actions
-
A base class for all non-algorithmic (not JDialog*) script actions.
- ActionBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionBase
- ActionChangeEndianess - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's endianess
- ActionChangeEndianess() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeEndianess(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeEndianess
-
Main constructor with parameters for changing the endianess
- ActionChangeModality - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's modality
- ActionChangeModality() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeModality(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeModality
-
Main constructor with parameters for changing the modality
- ActionChangeName - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the name of an image.
- ActionChangeName() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeName(ModelImage, String, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeName
-
Constructor used to record the ChangeName script action line.
- ActionChangeOrientations - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's orientations
- ActionChangeOrientations() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeOrientations(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations
-
Main constructor with parameters for changing the orientations
- ActionChangeOrigin - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's origin
- ActionChangeOrigin() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeOrigin(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeOrigin
-
Main constructor with parameters for changing the origin
- ActionChangeResolutions - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's resolutions.
- ActionChangeResolutions() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeResolutions(ModelImage, boolean, int, float) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions
-
Main constructor with parameters for changing the resolution/slice thickness.
- ActionChangeTalairachInfo - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's talairach information
- ActionChangeTalairachInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeTalairachInfo(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTalairachInfo
-
Main constructor with parameters for changing the talairach information
- ActionChangeTransformInfo - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's resolutions
- ActionChangeTransformInfo() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeTransformInfo(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeTransformInfo
-
Main constructor with parameters for changing the transform information
- ActionChangeUnits - Class in gov.nih.mipav.model.scripting.actions
-
A script action which changes the image's resolutions
- ActionChangeUnits() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionChangeUnits(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionChangeUnits
-
Main constructor with parameters for changing the units of measure
- ActionClone - Class in gov.nih.mipav.model.scripting.actions
-
A script action which clones an input image and puts it into a new image frame.
- ActionClone() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionClone(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionClone
-
Constructor used to record the script action line.
- ActionCloseFrame - Class in gov.nih.mipav.model.scripting.actions
-
An action which closes the frame containing an image.
- ActionCloseFrame() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionCloseFrame(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCloseFrame
-
Constructor used to record the script action line.
- ActionCollectGarbage - Class in gov.nih.mipav.model.scripting.actions
-
Forces the JVM to perform a garbage collection of un-referenced memory.
- ActionCollectGarbage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCollectGarbage
- ActionCreateBlankImage - Class in gov.nih.mipav.model.scripting.actions
-
A script action which creates a new blank image with a set of characteristics.
- ActionCreateBlankImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage
-
Constructor for the dynamic instantiation and execution of the CreateBlankImage script action.
- ActionCreateBlankImage(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage
-
Constructor used to record the CreateBlankImage script action line.
- actionDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
- ActionDiscovery - Interface in gov.nih.mipav.view.dialogs
-
Classes which implement this interface are able to report metainformation about themselves, return their input and output parameters, run their action using a set of input parameters, retrieve the real name of images they output, and return whether they have completed successfully.
- ActionExit - Class in gov.nih.mipav.model.scripting.actions
-
A script action which causes MIPAV to exit completely.
- ActionExit() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExit
- ActionExtractImageB - Class in gov.nih.mipav.model.scripting.actions
-
An action which extracts the imageB from a frame and puts it into a new image frame.
- ActionExtractImageB() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionExtractImageB(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionExtractImageB
-
Constructor used to record the script action line.
- actionField - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction
-
NoteField for providing a note about this marker.
- ActionImageProcessorBase - Class in gov.nih.mipav.model.scripting.actions
-
A base class for script actions which perform their action using an input image.
- ActionImageProcessorBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionImageProcessorBase(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase
-
Constructor used to record the Clone script action line.
- ActionImageProcessorBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionImageProcessorBase
-
Constructor used to record the Clone script action line.
- ActionKeyListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.ActionKeyListener
- actionListener - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
- ActionMaskToPaint - Class in gov.nih.mipav.model.scripting.actions
-
A script action which generates a paint mask based on a mask image.
- ActionMaskToPaint() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint
-
Constructor for the dynamic instantiation and execution of the MaskToPaint script action.
- ActionMaskToPaint(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToPaint
-
Constructor used to record the MaskToPaint script action line.
- ActionMaskToVOI - Class in gov.nih.mipav.model.scripting.actions
-
A script action which generates a VOI from a mask image.
- ActionMaskToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI
-
Constructor for the dynamic instantiation and execution of the MaskToVOI script action.
- ActionMaskToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionMaskToVOI
-
Constructor used to record the MaskToVOI script action line.
- ActionMetadata - Interface in gov.nih.mipav.view.dialogs
- ActionMetadata.ImageRequirements - Enum in gov.nih.mipav.view.dialogs
- ActionOpenAllVOIs - Class in gov.nih.mipav.model.scripting.actions
-
A script action which opens all VOIs from the directory where VOIs are saved by default when a SaveAllVOIs action is executed.
- ActionOpenAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs
-
Constructor for the dynamic instantiation and execution of the OpenAllVOIs script action.
- ActionOpenAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenAllVOIs
-
Constructor used to record the OpenAllVOIs script action line.
- ActionOpenImage - Class in gov.nih.mipav.model.provenance.actions
-
An action for the mipav system data provenance that records the opening of an image
- ActionOpenImage(ModelImage) - Constructor for class gov.nih.mipav.model.provenance.actions.ActionOpenImage
-
Constructor used to record the provenance action line
- ActionOpenVOI - Class in gov.nih.mipav.model.scripting.actions
-
A script action which opens a VOI from disk and adds it to an image.
- ActionOpenVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI
-
Constructor for the dynamic instantiation and execution of the OpenVOI script action.
- ActionOpenVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionOpenVOI
-
Constructor used to record the OpenVOI script action line.
- ActionPaintToMask - Class in gov.nih.mipav.model.scripting.actions
-
A script action which converts all paint within an image to some type of mask image (short, binary, ubyte).
- ActionPaintToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask
-
Constructor for the dynamic instantiation and execution of the PaintToMask script action.
- ActionPaintToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToMask
-
Constructor used to record the PaintToMask script action line.
- ActionPaintToVOI - Class in gov.nih.mipav.model.scripting.actions
-
A script action which generates a VOI based on the paint mask of an image.
- ActionPaintToVOI() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI
-
Constructor for the dynamic instantiation and execution of the PaintToVOI script action.
- ActionPaintToVOI(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionPaintToVOI
-
Constructor used to record the PaintToVOI script action line.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Routine to catch action events
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.CoordinateViewListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
Calls various methods depending on the action used by the advanced calculator.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.model.file.FileJP2
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.plugins.JDialogStandalonePlugin
-
Do super.actionPerformed().
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogACPC
-
If user clicks "Set", sets point here and in component image.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF
-
When the OK button is pressed, sets variables and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate
-
Responds to row button, column button, OK button, cancel button, and borderB button for color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate.OkBorderListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
-
Performs some error checking, then closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation
-
Catches action events: Okay, Cancel, Help and ChooseColor.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation.UpdateTextAction
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
when a button is clicked.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
-
Closes dialog box when the OK button is pressed and does the routine.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogAVIChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction
-
Key action event handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.HelpAction
-
Key action event handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBase.OKAction
-
Key action event handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBlankImage
-
Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation
-
Handle action events from the GUI.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundingVOIs
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor
-
Handles events generated by the user interface, and takes appropriate action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBrightness
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen
-
Performs the following actions based on the command:
OK - uses the "current rectangle" set either by a listener of a glass pane (region mode) or by the window listener (window mode) Cancel - cleans up and disposes the dialog Region - sets all the glass panes visible to enable drawing on top of objects without selecting them Window - sets the glass panes invisible; then when a window is selected, the listener will save that rectangle. - actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCaptureScreens
-
Handles the action events (called from script).
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass.CheckValueAction
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold
-
Closes dialog box when the OK button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
-
Sets parameters in ViewJComponentEditImage when Apply is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogClose
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
a button has been clicked!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D
-
Calls run on the algorithm from the script parser.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
Action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType
-
Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCT
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance
-
Closes dialog box when the "Close" button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
-
Handles the IGNORE button possibility of the ActionEvent, otherwise passes control to the super event handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor
-
closes dialog box when the OK button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
Closes dialog box when the "Close" button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
-
closes dialog box when the OK button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor
-
closes dialog box when the OK button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI
-
Method for catching actions (button/script).
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample
-
On "OK", sets the name variable to the text entered.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes
-
The actionPerformed method
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEnhancedDicomChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogErode
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation
-
Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation
-
Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain
-
Presently only the script function calls this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject
-
Presently only the script function calls this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
-
Presently only the script function calls this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET
-
Presently only the script function calls this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
closes the dialog when the user clicks close.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc
-
Converts the file infos to FileInfoDicoms.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMincHDF
-
Closes the dialog when the user clicks close and toggles private tags on and off when the user hits the "Show Private" button.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
closes the dialog when the user clicks close.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
-
Sets the appropriate file filter when the "OK" button is pressed; otherwise disposes of the dialog.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip
-
Processes button events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGridOptions.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT
-
Deprecated.Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioidChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircleChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipseChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbolaChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLineChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabolaChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids
-
Closes dialog box when the OK button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityPaint
-
Tests if entered intensity is within bounds and saves it.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIntensityThreshold
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert
-
Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLargestCircle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBgListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox.OkBorderListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection
-
Invoked when an action occurs.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection
-
Performs a directed action of the delete button or listB buttons.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLivewire
-
Sets the selection based on which radio button is selected.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage
-
when a button is clicked.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration
-
when a button is clicked.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
a button has been clicked!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMask3D4D
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
-
Closes Dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMean
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
-
Reads event from one of the buttons to perform that buttons action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMetaImageChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
-
Calls various methods based on the user's actions.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMode
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
Processes the events from this dialog's buttons.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNColors
-
Tests then sets the number of colors when the "OK" button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNIFTIChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise
-
actionPerformed - closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpacityControls
-
Sets opacity once close button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrder
-
Disposes of dialog.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOrientMatrix
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay
-
performed an action!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay
-
the usual stuff.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow
-
Sets parameters in PaintGrowListener when Apply is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintRGBComponents
-
Sets opacity once close button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature
-
Handle events from the dialog's buttons.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea.UpdateYSpaceAction
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRawIO
-
Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT
-
Only perform the save LUT action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline
-
Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
-
Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
-
Closes dialog box when the OK button is pressed, set variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemovePlugin
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice
-
Invoked when an action occurs.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue
-
Invoked when an action occurs.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptController
-
Main event handler for MIPAV scripting tool.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
-
Closes dialog box when the OK button is pressed and sets the information, doing error checking for every tag.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
handler the button click evens.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMinc
-
Closes dialog box when the OK button is pressed and sets the information.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMincVersionChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
-
Closes dialog box when the OK button is pressed and sets the information; when multi checkbox is selected or deselected, enables or disables appropriate labels and text fields; and disposes on cancel.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder
-
Reacts to the following actions:
Open - asks the user to choose a script file and dumps the contents to the text area
Save - saves the script to a file
Exit - callswindowClosing
Pause - pauses or resumes the script recording by setting isRecording appropriately
Edit - makes the text area editable or uneditable. - actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence
-
Invoked when an action occurs.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogServer
-
If the user hits the "OK" button, checks to make sure he or she entered valid data.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh
-
Sets smoothing varaibles when "OK" is pressed; enables the volumeText box when the limitCheckBox is pressed, disposes dialog when "Cancel" is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
Method for catching actions (button/script).
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
-
handler the button click evens.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
If user clicks "Set", sets point here and in component image.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogText
-
Closes dialog box when the "Close" button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE
-
Converts the file infos to FileInfoDicoms.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X
-
Converts the file infos to FileInfoDicoms.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold.CheckValueAction
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdLUT
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection
-
Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTLRC
-
If user clicks "Set", sets point here and in component image.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
-
Presently only the script function calls this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod.ThresholdChoiceListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ProcessChoiceListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1.ScannerChoiceListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
-
Calls transform methods to transform image if "Apply" is pressed; if "Cancel" is pressed, disposes.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTrim
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnknownIO
-
Closes dialog box when the OK button is pressed and sets the image type and suffix.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.JPanelAddRemoveVOI
-
Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.JPanelAddRemoveVOI
-
Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
when a button is clicked.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelAddRemoveVOI
-
Checks if all super's action commands are used, and ensures that the delete button removes items from listB, and that duplicate items in listB are not repeated.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions.StatisticsOptionsActionListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Applies changes to VOI when "Apply" is pressed; closes when "Cancel" is pressed; and calculates statistics and outputs them to the message frame when "Calculate" is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold
-
actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
-
Closes dialog box when the OK button is pressed and sets zoom.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic
-
actionPerformed - JButton events:
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
When state changes in some elements of the panel, the panel must make display changes; these changes are registered here.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.ExcluderOptionsActionListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
-
Performs the following actions based on the command:
OK - Initializes pertinent fields, checking that all fields are filled out correctly, before sending the information to be processed for an email Cancel - cleans up and disposes the dialog Other - sends event to secondary method that looks for combobox events - actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAction
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
-
Catches action events: Okay, Cancel
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JFrameHistogram
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelChecklist
-
Closes dialog box when the OK button is pressed and does the routine.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelFileSelection
-
Responds to ActionEvents, such as the "Browse" button being clicked.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelHistogram
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelListController
-
responds to the button presses.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelTreeController
-
responds to the button presses.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.MipavUtil.ActionAdapter
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
Invoke the action event accroding to the comamnd passed in.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera
-
Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener
-
Unchanged.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights.OkColorListener
-
Sets the button color to the chosen color and changes the color of the surface.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor
-
Command processor to handle the geodesic button events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Closes dialog box when the OK button is pressed and sets the variables.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase
-
Deprecated.Action performed method required when extending JPanelRendererBase.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener
-
Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis
-
actionPerformed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.JPanelVirtualEndoscopySetup
-
Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSimpleText
-
On "OK", sets the name variable to the text entered.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JDialogSurfaceAVI
-
Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties
-
Called when a button is pressed:
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay
-
Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener
-
Get color from chooser and set button and color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic
-
Command processor to handle the geodesic button events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse
-
Performs various actions depending on which event triggered this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog
-
Perform action for okButton and cancelButton.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
The override necessary to be an ActionListener.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener
-
Do nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.OkColorListener
-
Sets the button color to the chosen color and changes the color of the surface.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurfaceTexture
-
actionPerformed, listens for interface events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelView
-
Executes the following actions depending on what called this method:
Fly - changes the view platform to fly mode, so that the left mouse button is zoom, the right mouse button is translate, and the middle mouse button is pitch and roll. Standard - changes the view platform back to the standard, with the left mouse button grabbing the object and rotating it and the left mouse button with the alt mask doing a zoom. Reset - resets the view to what it was when the user called up this dialog. - actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow
-
Called when a button is pressed:
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter
-
Performs various actions depending on which event triggered this method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog
-
Perform action for okButton and cancelButton.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox
-
Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter
-
Calls various methods depending on the action: Load in menu - calls a file chooser and loads the quad surface Save in menu - calls a file chooser and saves the quad surface Exit in menu - exits this frame View in menu - opens view dialog Mouse in menu - opens mouse recorder dialog Line checkbox in menu - toggles polygon mode between fill and line Visible checkbox on panel - toggles image on and off
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JDialogBurnParameter
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Action perform event function that handle all the commands in the probe panel.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener
-
Unchanged.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.OkColorListener
-
Sets the button color to the chosen color and changes the color of the surface.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfacePaint
-
actionPerformed, listens for interface events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Handler for action events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast
-
Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp
-
Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener
-
Does nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener
-
Get color from chooser and set button and VOI color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogRendererAVI
-
Takes the following actions: OK Button - gets the frame rate from the text box and the subsample parameter from the combo boxes Cancel Button - closes the dialog without doing anything
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample
-
On "OK", sets the name variable to the text entered.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelAVIChoice
-
Checks to see if the OK or Cancel buttons were pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT
-
Deprecated.Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Action performed method.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.SceneState
-
Stub method for classes that extend this Object.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
-
action performed
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
-
When Apply button is pressed, applies changes to all three areas: image name, resolutions, and transformation matrix.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener
-
Do nothing.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.OkColorListener
-
Sets the button color to the chosen color and changes the color of the fiber bundle.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.JPanelVirtualEndoscopySetup_WM
-
Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput
-
ActionListener event.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
-
Called when a button is pressed:
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener
-
Get color from chooser and set button and color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener
-
Get color from chooser and set button and color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
-
Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Changes color of box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM
-
Command processor to handle the geodesic button events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
-
Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelPositions
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM
-
Command processor to handle the geodesic button events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed; and closes dialog if "Close" button was pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
The override necessary to be an ActionListener.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener
-
Get color from chooser and set button and color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurfaceTexture_WM
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelVolume4D
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfacePaint_WM
-
actionPerformed, listens for interface events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
-
Dialog local handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
Action performed handler for this dialog.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
ActionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
-
Dialog local handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
-
Closes dialog box when the OK button is pressed and calls the algorithm.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
Just handle GUI button clicks event.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
Just handle GUI button clicks event.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList
-
Dialog local actionPerformed handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
handler the button click evens.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
-
handler the button click evens.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener
-
Get color from chooser and set button and color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.RubberbandLivewire
-
Stops the thread, and disposes the progress bar.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewControlsImage
-
Action event handler.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameBase
-
Method to handle action events generated by the main UI when the current frame is selected.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
-
Handles action events
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint.JDialogGridSize
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
Recreates the tree when a new directory is selected; refreshes the tree when refresh is selected.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph
-
Takes the action commands and paints if the apply button is pressed, closes if the close button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.bColorListener
-
Resets the background color based on the user's choice.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.CancelListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameGraph.ColorListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT
-
Deprecated.Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage
-
calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameImage.OkColorListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Handler for action events.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMemory
-
Calls various methods based on the user's actions.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessage
-
If "Save", saves text to file; if "Clear", clears appropriate text area; if "Copy", copies text to clipboard; if "Cut", removes the text and copies it to the clipboard; and if "Select", selects all text in text area.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph
-
Closes dialog box when the OK button is pressed.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature
-
Listen for events from the MIP frame GUI.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Calls various methods based on the user's actions.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistration.JDialogIncrement
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool.JDialogIncrement
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJFrameTriImage.OkColorListener
-
Pick up the selected color and call method to change the color.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelHistoLUT.OkColorListener
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calls various methods depending on the action.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin
-
Will execute the uninstall action
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewJProgressBar
-
Closes this progress bar when the cancel button is clicked.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
DOCUMENT ME!
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface
-
Calls various methods based on the user's actions.
- actionPerformed(ActionEvent) - Method in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
- ActionSaveAllVOIs - Class in gov.nih.mipav.model.scripting.actions
-
A script action which saves all the VOIs in an image to disk.
- ActionSaveAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs
-
Constructor for the dynamic instantiation and execution of the SaveAllVOIs script action.
- ActionSaveAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs
-
Constructor used to record the SaveAllVOIs script action line.
- ActionSaveAllVOIs(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveAllVOIs
-
Constructor used to record the SaveAllVOIs script action line.
- ActionSaveBase - Class in gov.nih.mipav.model.scripting.actions
-
A script action which writes out an image to disk.
- ActionSaveBase() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase
-
Constructor for the dynamic instantiation and execution of the script action.
- ActionSaveBase(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveBase
-
Constructor used to record the script action line.
- ActionSaveImage - Class in gov.nih.mipav.model.scripting.actions
-
A script action which writes out an image to disk.
- ActionSaveImage() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage
-
Constructor for the dynamic instantiation and execution of the SaveImage script action.
- ActionSaveImage(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImage
-
Constructor used to record the script action line.
- ActionSaveImageAs - Class in gov.nih.mipav.model.scripting.actions
-
A script action which writes out an image to disk.
- ActionSaveImageAs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs
-
Constructor for the dynamic instantiation and execution of the SaveImage script action.
- ActionSaveImageAs(ModelImage, FileWriteOptions) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveImageAs
-
Constructor used to record the script action line.
- ActionSaveTab - Class in gov.nih.mipav.model.scripting.actions
-
A script action which records saves the text contained in one of the output frame's tabs.
- ActionSaveTab() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab
-
Constructor for the dynamic instantiation and execution of the SaveTab script action.
- ActionSaveTab(String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveTab
-
Constructor used to record the SaveTab script action line.
- ActionSaveVOIIntensities - Class in gov.nih.mipav.model.scripting.actions
-
A script action which saves all the VOI intensities in an image to disk.
- ActionSaveVOIIntensities() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities
-
Constructor for the dynamic instantiation and execution of the SaveVOIIntensities script action.
- ActionSaveVOIIntensities(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities
-
Constructor used to record the SaveVOIIntensities script action line.
- ActionSaveVOIIntensities(ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSaveVOIIntensities
-
Constructor used to record the SaveVOIIntensities script action line.
- ActionSelectAllVOIs - Class in gov.nih.mipav.model.scripting.actions
- ActionSelectAllVOIs() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs
-
Constructor for the dynamic instantiation and execution of the SelectAllVOIs script action.
- ActionSelectAllVOIs(ModelImage) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionSelectAllVOIs
-
Constructor used to record the SelectAllVOIs script action line.
- ActionStartMipav - Class in gov.nih.mipav.model.provenance.actions
-
An action for the mipav system data provenance that records the starting of MIPAV
- ActionStartMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStartMipav
- ActionStopMipav - Class in gov.nih.mipav.model.provenance.actions
-
An action for the mipav system data provenance that records the closing of MIPAV
- ActionStopMipav() - Constructor for class gov.nih.mipav.model.provenance.actions.ActionStopMipav
- ActionVOIToMask - Class in gov.nih.mipav.model.scripting.actions
-
A script action which converts all VOIs within an image to some type of mask image (short, binary, ubyte).
- ActionVOIToMask() - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask
-
Constructor for the dynamic instantiation and execution of the VOIToMask script action.
- ActionVOIToMask(ModelImage, ModelImage, String) - Constructor for class gov.nih.mipav.model.scripting.actions.ActionVOIToMask
-
Constructor used to record the VOIToMask script action line.
- activate() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
- activateStore - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Buttons used for the host tab
- active - Variable in class gov.nih.mipav.model.algorithms.SIFT.VlFileMeta
- active - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.polygon_node
- active - Variable in class gov.nih.mipav.model.structures.VOI
- active - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Flag indicating whether or not a VOI is active (selected).
- active - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
- active - Variable in class gov.nih.mipav.view.Rubberband
-
DOCUMENT ME!
- active(int, double[], double[], int[], double[], int[], int, boolean[], boolean[], boolean[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
- ACTIVE_IMAGE_COLOR - Static variable in class gov.nih.mipav.view.ViewJComponentEditImage
-
Color used in the rectangle indicating the image is active.
- active_set - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
- active_set - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
- active_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
- active_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
- activeBurn(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase
-
Active the current burning point type.
- activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- activeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- activeColor - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
-
DOCUMENT ME!
- activeContoursAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
DOCUMENT ME!
- activeDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- activeFrame - Variable in class gov.nih.mipav.view.dialogs.JDialogCaptureScreen
-
Active frame
- activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation
-
The image that contains the VOI text.
- activeImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTrim
-
The currently selected image
- activeImageColorBorderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
-
border size for active image color
- activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- activeIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- activeLightBulbIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Record the current active index of light bulb, which is being picked.
- activeProbe(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
Active the corresponding probe with the given probe type.
- activeReceivers - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
- activeSliceButton - Variable in class gov.nih.mipav.view.ViewJFrameLightBox
-
DOCUMENT ME!
- activeTree - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Livewire calculations:
- activeTree - Variable in class gov.nih.mipav.view.RubberbandLivewire
-
DOCUMENT ME!
- ActiveTree() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager.ActiveTree
-
Sets root node to null.
- ActiveTree() - Constructor for class gov.nih.mipav.view.RubberbandLivewire.ActiveTree
-
Sets root node to null.
- activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
-
The voi selected by the user.
- activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
-
The voi selected by the user.
- activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
-
The voi selected by the user.
- activeVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
-
The VOI on which to perform the calculations.
- activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
- activeVolume - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
-
A radio button to select calculation only for the active volume
- activeVolumeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- actOnPath - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
for the files selected ...
- actual_number_of_colors - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2
- actualAnswer - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
- actualDateTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
18.
- actualHistory - Variable in class gov.nih.mipav.model.file.FileICS
-
DOCUMENT ME!
- actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- actualPerSecond - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
DOCUMENT ME!
- actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- actualReceiveFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- actualThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- actualThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
- actualThresholdLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
- actualThresholdText - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
- actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- actualTransmitFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- aCutoff - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- AD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- ad1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ad9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- ADAMS_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
- ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
- ADAPTIVE_SIZE - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
- ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
- ADAPTIVE_TRUNCATED_VECTOR_MEDIAN_FILTER - Static variable in class gov.nih.mipav.view.dialogs.JDialogMedian
- ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
- ADAPTIVE_VECTOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- adaptiveButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
- adaptiveSmooth(float[][][], float[]) - Method in class gov.nih.mipav.model.file.jxlatte.LFCoefficients
- adaptiveTruncatedVectorMedian(float, float, float, float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Only used with color images in vector filtering.
- adaptiveVectorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- adaptWhitePoint(jxlatte.CIEXY, jxlatte.CIEXY) - Method in class gov.nih.mipav.model.file.jxlatte.ColorManagement
- adbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
- adcImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
- ADCImageName - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
- add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- add(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
- add(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- add(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- add(float) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSurfaceDecimator
-
New edges that occur because of modified triangles being added to the mesh must be added to the heap and the heap must be updated.
- add(int) - Method in class gov.nih.mipav.model.file.FileInfoDicom.LengthStorageUnit
-
Adds the parameter i to the stored value.
- add(int[], Vector3f[]) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraphSamples
-
Add the following information for a "branch" path of the graph: an array of key values for each point along the path, an array of 3D coordinates assoicated with each point, and an array of distances each point is from its nearest boundary.
- add(int, float) - Method in class gov.nih.mipav.model.structures.HQueue
-
add - adds a value to the queue.
- add(int, float) - Method in class gov.nih.mipav.view.renderer.flythroughview.FlyPathGraph
-
Add a branch to the already existing branch at the specified distance along the branch.
- add(int, int) - Method in class gov.nih.mipav.model.structures.Voro.particle_order
-
Adds a record to the order, corresponding to the memory address of where a particle was placed into the container.
- add(int, VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
- add(MetadataExtractor.Knot) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Subpath
-
Appends a knot (set of 3 points) into the list
- add(RealPolynomial) - Method in class gov.nih.mipav.model.structures.RealPolynomial
- add(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector
-
Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
- add(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
- add(VOIBase, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Called from ViewJComponentTriImage to add the image-align protractor.
- add(VOIBase, int, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Add a point to the voi contour
- add(VOIBase, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Add a new point to the end of the current contour.
- add(VOIPoint) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
-
Add a new VOIPoint to this polyline.
- add(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
-
Returns a DoubleDouble whose value is (this + y).
- add(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
- add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Plus operator.
- add(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
- add(CVisRGBA, CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
- add(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- add(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
- add(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
- add(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- add(PPolynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
- add(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
- add(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
- add(Component) - Method in class gov.nih.mipav.view.JScrollMenu
- add(Component, int) - Method in class gov.nih.mipav.view.JScrollMenu
- add(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewControlsImage
-
Adds a component to the toolbar panel using the given gridbag constraints.
- add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelSet
-
DOCUMENT ME!
- add(Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter
-
Adds a new mouse event to the end of the mouseEvents vector.
- add(Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector
-
Adds a new mouse event to the end of the mouseEvents vector.
- add(Object, Object) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.MouseEventVectorPlotter
-
Adds a new mouse event to the end of the mouseEvents vector.
- add(Object, Object) - Method in class gov.nih.mipav.view.renderer.MouseEventVector
-
Adds a new mouse event to the end of the mouseEvents vector.
- add(HashMap<String, String>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.Metadata
- add(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager
-
Adds a new component to the panel.
- add(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager
-
Adds a new component to the panel.
- add(JMenuItem) - Method in class gov.nih.mipav.view.JScrollMenu
- add(Vector3f) - Method in class gov.nih.mipav.model.structures.VOIPolyLineSlice
- add(Polyline, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
- Add(double[], double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
- Add(ComputationalGeometry.Matrix4x4, ComputationalGeometry.Matrix4x4) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.ExtensionMethods
- Add(ComputationalGeometry.QEM_Edge) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.Heap
- Add(NVectorF, float, NVectorF, float, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
- Add(NVectorF, float, NVectorF, NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
- Add(VectorD, double, VectorD, double, VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
- Add(VectorD, double, VectorD, VectorD) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
- Add(VectorF, float, VectorF, float, VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
- Add(VectorF, float, VectorF, VectorF) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
- ADD - Enum constant in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
- ADD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
-
operation constants
- ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator
-
add
- ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- ADD - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
DOCUMENT ME!
- add_component(short) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- add_dictionary(int[], int[], int[]) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
- add_edge_to_aet(GenericPolygonClipper.edge_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_entry(short, charls.golomb_code_match) - Method in class gov.nih.mipav.model.file.charls.golomb_code_match_table
- add_event(TURN_REP, TURN_REP, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
- add_fragment(charls.span8) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader.mapping_table_entry
- add_gaussian_noise(double[], double[], double[], double, boolean, long) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
- add_intersection(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_into(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- add_into(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
- add_into(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
- add_into(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
- add_into(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
- add_into(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
- add_into(NVectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
- add_into(Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- add_into(VectorD) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
- add_into(VectorF) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
- add_left(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_list_memory(int[], int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_poly_radius_poly
-
Adds memory to the queue.
- add_list_memory(int[], int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_radius_mono
-
Adds memory to the queue.
- add_list_memory(int[], int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_poly_radius_poly
-
Adds memory to the queue.
- add_list_memory(int[], int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_radius_mono
-
Adds memory to the queue.
- add_local_min(GenericPolygonClipper.polygon_node[], GenericPolygonClipper.edge_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_mapping_table(short, short, charls.span8) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- add_memory(Voro.voronoicell_neighbor, int) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
- add_memory(Voro.voronoicell, int) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Increases the memory storage for a particular vertex order, by increasing the size of the of the corresponding mep array.
- add_memory_ds() - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Doubles the size allocation of the main delete stack.
- add_memory_ds2() - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Doubles the size allocation of the auxiliary delete stack.
- add_memory_vertices(Voro.voronoicell) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Doubles the maximum number of vertices allowed, by reallocating the ed, nu, and pts arrays.
- add_memory_vertices(Voro.voronoicell_neighbor) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
- add_memory_vorder(Voro.voronoicell) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Doubles the maximum allowed vertex order, by reallocating mem, mep, and mec arrays.
- add_memory_vorder(Voro.voronoicell_neighbor) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
- add_memory_xse() - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Doubles the size allocation of the auxiliary delete stack.
- add_ordering_memory() - Method in class gov.nih.mipav.model.structures.Voro.particle_order
-
Extends the memory available for storing the ordering.
- add_particle_memory(int) - Method in class gov.nih.mipav.model.structures.Voro.container_base
-
Increase memory for a particular region.
- add_particle_memory(int) - Method in class gov.nih.mipav.model.structures.Voro.container_periodic_base
-
Increase memory for a particular region.
- add_right(GenericPolygonClipper.polygon_node, double, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_singularities(int[], double[], double) - Method in class gov.nih.mipav.model.algorithms.Confmap.confMap
- add_singularities(int, double[], double) - Method in class gov.nih.mipav.model.algorithms.Confmap.confMap
- add_singularity(int, double, double) - Method in class gov.nih.mipav.model.algorithms.Confmap.confMap
- add_st_edge(GenericPolygonClipper.st_node[], GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_SubSigs(AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, AlgorithmGaussianMixtureModelEM.SubSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
- ADD_TAG - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
-
For adding a top level dicom tag
- ADD_TAG_SEQ - Static variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
-
For adding a dicom tag contained within a sequence
- add_to_mask(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_poly_radius_poly
-
Scans the six orthogonal neighbors of a given block and adds them to the queue if they haven't been considered already.
- add_to_mask(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_radius_mono
-
Scans the six orthogonal neighbors of a given block and adds them to the queue if they haven't been considered already.
- add_to_mask(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_poly_radius_poly
-
Scans the six orthogonal neighbors of a given block and adds them to the queue if they haven't been considered already.
- add_to_mask(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.Voro.voro_compute_container_radius_mono
-
Scans the six orthogonal neighbors of a given block and adds them to the queue if they haven't been considered already.
- add_to_sbtree(int[], GenericPolygonClipper.sb_tree[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- add_to_stack(int, int) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Adds a point to the auxiliary delete stack if it is not already there.
- add_triangle(int, int, int, int, int, int) - Method in class gov.nih.mipav.model.structures.Delaunator.DelaunatorStruct
- add_wall(Voro.voro_base_wall_list) - Method in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
-
Adds all of the walls on another wall_list to this class.
- add_wall(Voro.wall) - Method in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
-
Adds a wall to the list.
- add128 - Variable in class gov.nih.mipav.model.file.FileZVI
- add3DMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
- add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- add3DMarker(VOI, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- add3DMarker(VOI, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- add3DVOI(String, SurfaceState, VolumeSurface) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
- addABCD(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
- addAbstractSyntax(String) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Adds proposed abstract syntax to hash table.
- addActionListener(ActionListener) - Method in class gov.nih.mipav.view.ViewJProgressBar
-
DOCUMENT ME!
- addActiveImageControl() - Method in class gov.nih.mipav.view.ViewControlsImage
-
Displays the panel which controls which image is the "active image" displayed when imageB is available.
- addAllSupportedAbstractSyntaxes() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Adds all proposed abstract syntaxes to hash table.
- addAloneMenu(JMenuBar) - Method in class gov.nih.mipav.view.ViewUserInterface
-
Adds a standalone menu to the user interface.
- addAmbient(Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight
-
Calculate the color due to ambient lighting.
- addAnimationLattice(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- addAnimationVOIs(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- addAnimationVOIs(VOIVector, JPanelAnnotationAnimation) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- addAnnotateButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
-
button for adding annotation points for the path planning
- addAnnotation(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
-
Add an annotation to the latticeModel.
- addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
-
Add an annotation to the latticeModel.
- addAnnotation(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Add an annotation to the annotation list.
- addAnnotation(VOIWormAnnotation, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
-
Adds an annotation listener to the latticeModel.
- addAnnotationListener(AnnotationListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Adds an annotation listener.
- addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
When left mouse press with the control key down on the bottom three planar view, add the annotation point
- addAnnotationPoint(Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
-
Add the annotation point
- addAnnotations(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Called when new annotations are loaded from file, replaces current annotations.
- addAnnotations(VOIVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoMinc
-
Creates the anonymization button and adds it to the button panel.
- addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE
-
Creates the anonymization button and adds it to the button panel.
- addAnonymizeButton() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X
-
Creates the anonymization button and adds it to the button panel.
- addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
- addAttachedSurfaces() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
- addAttValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc
-
Sets the value of the attribute element; used for setting attribute of variables.
- AddBackSlash(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
-
Ensures that a string is terminated with a backslash.
- addBlur(ModelImage, ModelImage) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
-
Combines the randomized-voxel blurred image with the output image.
- addBorder(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
DOCUMENT ME!
- addBorder3D(float[], float[], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
This method adds a border to the input data so that borders can be dealt with easily.
- addBoxSlice(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Adds the slice frame for slice of the given orientation to the scene graph.
- addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Adds a BranchGroup to the display.
- addBranch(BranchGroup, ModelTriangleMesh, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Updates the surRender -- adds a BranchGroup to the main Display.
- addBranchGroup(Node, Transform3D) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow
-
Creates a BranchGroup containing the input Node and Transform3D, and returns the BranchGroup.
- addBrowseFilesButton() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage
-
adds the "Browse Files ...." button to the right of the panel.
- addBurn(BurnAttributes) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation
-
Add a burn to the treatment list.
- addButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- addButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
-
Buttons used by this dialog
- addButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase
-
Selection buttons
- addButton(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView
-
***************************************************************************************************** Creating buttons
- addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor
-
tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
- addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
-
tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
- addButtonListener(ActionListener) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor
-
tell the "Apply to all slices" check-box, OK and cancel buttons to tell the calling object that it is doing something.
- addButtonSeq - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
-
Buttons used by this dialog
- addCellEditorListener(CellEditorListener) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
- addChannelCheckboxListener(ItemListener) - Method in class gov.nih.mipav.view.components.JPanelColorChannels
-
Add an ItemListener to all of the color channel checkboxes.
- addChannelComponent(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
-
DOCUMENT ME!
- addChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
-
DOCUMENT ME!
- addCleanupOnWindowClosingListener(Window) - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas
-
Adds a
WindowListenerto the specified window that takes care of cleanup (GL resources) when the window is about to close. - addClipSlice() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach clipping plane branch group.
- addClipSliceA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach arbitrary clip slice bounding frame.
- addClipSliceStatic() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach static clip slice bounding frame.
- addClipSliceStaticInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach static inverse clip slice bounding frame.
- addClipSliceX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach X clip slice bounding frame.
- addClipSliceXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach X Invative clip slice bounding frame.
- addClipSliceY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach Y clip slice bounding frame.
- addClipSliceYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach Y Invative clip slice bounding frame.
- addClipSliceZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach Z clip slice bounding frame.
- addClipSliceZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Attach Z Invative clip slice bounding frame.
- AddColinearPoints(List<ComputationalGeometry.MyVector2>, ArrayList<ComputationalGeometry.MyVector2>) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.QuickhullAlgorithm2D
- addCollectionOfRunnable(Collection<Runnable>, Collection<String>) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
-
Secondary method for registering algorithms to the multi-bar.
- addCommentLine(String) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder
-
Appends a comment line to the current script (if one is being recorded).
- AddComplexRootPair(Vector<Double>, double, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- addConfiguredListener(RendererListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- addConnections(Backpropagation.Neuron[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
- addConnections(ArrayList<Backpropagation.Neuron>) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
- AddConstraints(ComputationalGeometry.HalfEdgeData2, ArrayList<ComputationalGeometry.MyVector2>, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.ConstrainedDelaunaySloan
- addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Helper method that adds components to the control panel for the grid bag layout.
- addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Helper method that adds components to the control panel for the grid bag layout.
- addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
Method that adds components to the control paenl.
- addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
Method that adds components to the control paenl.
- addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
Adds a component to the control panel.
- addControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
Adds a component to the control panel.
- addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Helper method that adds components to the control panel for the grid bag layout.
- addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Helper method that adds components to the control panel for the grid bag layout.
- addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
-
Helper method that adds components to the control panel for the grid bag layout.
- addControlPanel(JPanel, Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
-
Helper method that adds components to the control panel for the grid bag layout.
- addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE
-
Creates the convert button and adds it to the button panel.
- addConvert() - Method in class gov.nih.mipav.view.dialogs.JDialogTextGE4X
-
Creates the convert button and adds it to the button panel.
- addCoordinateChangeListener(CoordinateChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Add someone who wants to be notified about crosshair coordinate changes.
- addCoordinateViewListener(ContourPlot.CoordinateViewListener) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
-
Adds a
ContourPlot.CoordinateViewListenerto this renderer which will be notified whenever the coordinate view changes (i.e. whenContourPlot.CoordSysRenderer.setCoordinateView(double, double, double, double)is called) - addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Attach cubic control branch group.
- addCubicControl() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Attach cubic control branch group.
- addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- addCurveListener(CurveListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- addCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewControlsImage
- addDataset(String, Integer, Boolean) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addDatasetRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
-
DOCUMENT ME!
- addDataToHash(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.famsPoint, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- addDataToRes(AlgorithmMeanShiftClustering.fams_hash_entry[][], int[], AlgorithmMeanShiftClustering.fams_res_cont, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- addDDTypeHash(int, int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_RTC
-
DOCUMENT ME!
- addDetector(String, String, String, Float, Float, Float, Integer, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument
-
DOCUMENT ME!
- AddDiagonalAndInvert(double[], int, CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- addDiffuse(SoftwareMaterial, SoftwareVertexProperty, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight
-
Calculate the color due to diffuse lighting.
- addDimElem(String, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc
-
Puts a new dimension element with the specified parameters into the dimension array at the gievn index.
- addDirectory(T) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Metadata
-
Adds a directory to this metadata collection.
- addDirToLibPath(String) - Static method in class gov.nih.mipav.util.NativeLibraryLoader
- addedCurve(VOIEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIListener
-
handles an VOIEvent as a selection change.
- addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance.VOIHighlighter
-
We are not interested in adding Curves, so this method is empty.
- addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations.VOIHighlighter
-
We are not interested in adding Curves, so this method is empty.
- addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.VOIHighlighter
-
We are not interested in adding Curves, so this method is empty.
- addedCurve(VOIEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- addEdge(float[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
- addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic
-
Add the edge to the EdgeList, check to make sure that edge has not already been added.
- addEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM
-
Add the edge to the EdgeList, check to make sure that edge has not already been added.
- AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
- AddEdge(Vertex, Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
- AddEdge(Vertex, Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
- AddEdgeIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
- AddEdges(double[], double, Edge[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingSquares
- addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
-
DOCUMENT ME!
- addedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint
-
DOCUMENT ME!
- addedVOI - Variable in class gov.nih.mipav.model.file.FileCheshireVOI
-
DOCUMENT ME!
- addedVOI(VOIVectorEvent) - Method in interface gov.nih.mipav.model.structures.event.VOIVectorListener
-
handles an VOIEvent as a selection change.
- addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
- addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
- addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
resets the volumes list to the current VOIVector. adds the highlighter to the new VOI.
- addedVOI(VOIVectorEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- addElement(float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Adds a point to the curve.
- addElement(int) - Method in class gov.nih.mipav.model.structures.IntVector
-
Pushes a new value onto the array.
- addElement(int, int, int) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Adds a point to the curve.
- addElement(ProvenanceEntry) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder
-
Catches the Vector's addElement for listener notifaction
- addElement(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector
-
Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
- addElement(VOI) - Method in class gov.nih.mipav.view.ViewVOIVector
-
Override the Vector method to ensure that object is a voi, and that the new voi's name is unique.
- addElement(VOIBase) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
- addElement(VOIBase, boolean) - Method in class gov.nih.mipav.model.structures.VOIBaseVector
- AddElementToGroup(T, int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.OrderedGroups
- addEntry(Class, Class...) - Method in class gov.nih.mipav.plugins.ManifestFile
-
Adds an entry to the manifest file, does in fact write to the file.
- addError(String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Directory
-
Registers an error message with this directory.
- addError(String, MetadataExtractor.Metadata) - Method in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
- AddEvent(String) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.EventLogger
- addExifTagNames(HashMap<Integer, String>) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ExifDirectoryBase
- addExperiment(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addExperimenter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addExtension(String) - Method in class gov.nih.mipav.model.file.FileTypeInfo
-
Add an extension to the file type's list of supported suffixes.
- addExtension(String) - Method in class gov.nih.mipav.view.renderer.flythroughview.FileFilterExt
-
Add an extension to the list of possible extensions valid for this filter.
- addExtensionAssociation(String, int) - Static method in class gov.nih.mipav.model.file.FileTypeTable
- AddExtents() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
-
Returns the amount shape extents added (warning: shape extents will be remove in later versions).
- addFace() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- addFace(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- addFiles(File, Vector<String>) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
- addFilesToVector(String, Vector<String>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI
-
Recursively adds DICOM filenames and directory paths to a Vector.
- addFilter(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument
-
DOCUMENT ME!
- addFindResultToList(DICOM_Object, DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Utility function to collect the results of a DICOM query.
- addFlightPath() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Updates the surRender to display the flythru flight path from the flythruRender.
- addFlightPath(Shape3D, Point3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Adds the flythru path shape and current view position to the display.
- addFrames(libdt.PatchExtractor, libdt.Mat[]) - Method in class gov.nih.mipav.model.algorithms.libdt
- addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT
-
Add a new function point to the current LUT transfer function.
- addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHistoRGB
-
/
- addFunctionPoint(float, float) - Method in class gov.nih.mipav.view.ViewJComponentHLUTBase
-
Add a new function point to the current LUT transfer function.
- addFunctionToLUT() - Method in class gov.nih.mipav.model.file.FileImageXML
-
Adds the LUT functions collected within the functionVector.
- addFunctionToRGB() - Method in class gov.nih.mipav.model.file.FileImageXML
-
Adds the ModelRGB functions contained within the functionVector.
- addGattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileInfoMinc
-
Puts a new global attribute array element with the specified parameters into the global attribute array at the given index.
- addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM
-
Add a new geodesic component to the TriMesh surface display.
- addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Add a geodesic element to the surface display.
- addGeodesic(TriMesh, Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
Add a new geodesic component to the surface.
- AddGeodesic(Geometry, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
-
Add a new geodesic component to the surface.
- addGiniImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
- addGM() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Add the gradient magnitude histogram to the opacity control panel.
- addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Add the gradient magnitude histogram to the opacity control panel.
- addGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase
-
Deprecated.
- addGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Add the gradient magnitude hitogram to the opacity control panel.
- AddGroundtruth(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds
-
Add ground truth from give image and voi
- AddGroundtruths(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds
-
Add ground truth
- addGroup(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addGroupRef(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Experimenter
-
DOCUMENT ME!
- addGuideLine() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
Draw the red guiding line along the start and end point.
- addImage(ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Add model image into the capture frame.
- addImage(String, String, String, Integer, Integer, Integer, Integer, Integer, Float, Float, Float, Float, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
browse button
- addImageBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
-
browse button
- addImageDisplayListener(ViewImageUpdateInterface) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Add a listener to this class so that notifyListener can be used to notify all listeners to update the display of the image.
- addImageRegistryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ImageRegistryMonitor
-
add a memory change listener.
- addImpl(Component, Object, int) - Method in class gov.nih.mipav.view.JScrollPopupMenu
- addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
- addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
- addImpurityImportance(int, int, double) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
- addInclude(Integer, URI, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
need these functions to create the classes within..
- addInputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
-
Adds an image register as an input-image
- addInsertionPoint(Vector3f, Vector3f, Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Adds a point to the lattice.
- addInstrument(Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addIntensityLock(int) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
Adds an Integer object to the intensityLockVector.
- AddInterior(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Add articifial interior points to the shape by making a Delaunay triangulation and adding the centroid of each triangle.
- addItem(int, float, boolean, Point3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList
-
Create a new annotation item with the specified information and add the item to the end of the list.
- addItem(int, float, boolean, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM
-
Create a new annotation item with the specified information and add the item to the end of the list.
- addItem(FileDicomSQItem) - Method in class gov.nih.mipav.model.file.FileDicomSQ
-
Add an item to the sequence vector.
- addItem(FlyPathAnnotateList.Item) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathAnnotateList
-
Add the specified annotation item to the end of the list.
- addItem(FlyPathAnnotateList_WM.Item) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathAnnotateList_WM
-
Add the specified annotation item to the end of the list.
- addItemToRender(ContourPlot.Renderable) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.CompleteRenderer
-
Adds the specified item to the corresponding renderer.
- addItemToRender(T) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.GenericRenderer
-
Adds an item to this renderer's
ContourPlot.GenericRenderer.itemsToRenderlist. - additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
label for browsing for additional images
- additionalImagesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
-
label for browsing for additional images
- additionalImagesList - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
list of any additional images browsed to
- additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
-
additional images to concat...the ones you add later on
- additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
-
additional images to concat...the ones you add later on
- additionalImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
-
additional images to concat...the ones you add later on
- additionalPluginDirList - Static variable in class gov.nih.mipav.plugins.PluginUtil
- additionalSets - Variable in class gov.nih.mipav.model.file.FileImageXML
-
A listing of all the additional
PSetsto be written into the saved file. - additionalTagsList - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
- ADDITIVE - Static variable in class gov.nih.mipav.model.structures.VOI
-
Mask as ones - i.e. put ones to indicate VOI location
- addJarContext(String) - Method in class gov.nih.mipav.plugins.JarClassLoader
- addJustVerificationAbstractSyntax() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Adds just the verification syntax for DICOM verification process.
- addkernel - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmGaussianBlur
- addKey(String, String, String) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
- addKeysToAllowList(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
- addLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView
-
***************************************************************************************************** Creating labels
- addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- addLatticeListener(LatticeListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- addLayoutComponent(String, Component) - Method in class gov.nih.mipav.view.JScrollPopupMenu.ScrollPopupMenuLayout
- addLeadingZeros(int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util
-
Pads zeros to a number.
- addLeadingZeros(String, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Util
-
Pads zeros to a string representation of a number.
- addLeftRightMarker(VOI, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- addLeftRightMarker(Vector3f, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Adds a new left/right marker to the worm image.
- addLightSource(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument
-
DOCUMENT ME!
- addLightSourceRef(Integer, Integer, String, Float, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
-
DOCUMENT ME!
- addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
-
Adds a scriptable action to an image's data provenance
- addLine(ScriptableActionInterface) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder
-
Add a line to the current script by requesting a script action to generate its script line.
- addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
-
Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
- addLine(String, ParameterTable) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder
-
Appends a line of text to the current script (if one is being recorded) using a script action and list of parameters.
- addLineArray(LineArray, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Called from the JDialogDTIInput.
- addLineLabel(double, int, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
-
Adds a label for a line to this legend.
- addLineLabel(double, int, String) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
-
Adds a label for a line to this legend.
- addLineLabel(double, int, String, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Legend
-
Adds a label for a line to this legend.
- addLineSegment(AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, AlgorithmNetworkSnake.SnakeInitialiser.Node, ArrayList<Point>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
- addList() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
- addListener - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- addListener(AlgorithmInterface) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Add a listener to this class so that when when the algorithm has completed processing it can use notifyListener to notify all listeners that the algorithm has completed.
- addListeners() - Method in class gov.nih.mipav.view.ViewFileChooserBase
-
Adds all listeners required by this accessory.
- addLUValue(String) - Method in class gov.nih.mipav.model.file.FileImageXML
-
Adds LUValue for either LUT or modelRGB.
- addMatrix(TransMatrix) - Method in class gov.nih.mipav.model.structures.MatrixHolder
-
Adds a matrix to the map. matrices will be keyed by their type and sequential numbering
- addMemoryChangeListener(ChangeListener) - Method in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor
-
add a memory change listener.
- addMenuDragListener(Component, MenuDragMouseListener) - Method in class gov.nih.mipav.view.ViewMenuBuilder
-
Attaches a MenuDragMouseListener to
compand all of its sub-components (if comp is a JMenu/JMenuItem. - addMesh(ModelTriangleMesh, ModelTriangleMesh) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
-
ReplaceMesh is used by the Geodesic when a mesh is cut.
- addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelGeodesic
-
Add new mesh to the volume rendering.
- addMesh(ModelTriangleMesh, ModelTriangleMesh, String) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Called when a mesh is changed by the Geodesic class, when a mesh is cut along the geodesic curve it may be divided into two or more meshes.
- addNeurite(VOI, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Generates a natural spline curve to fit the input set of annotation points to model a neurite.
- addNeurite(String, String[], ColorRGB) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- addNode - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
-
When true the dialog creates a new node, otherwise it is used to edit the Notes.
- addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
- addNode - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel.PropertiesDialog
- addNode(int, int, AlgorithmNetworkSnake.AnchorPosition) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser
- addNode(String, String) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
-
Add a new node under the picked node.
- addNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Add a new display node to the volume/surface display list.
- AddNode(Node) - Method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
-
Add a new scene-graph node to the display list.
- addNodeDialog - Variable in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
- addNormals(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
- addNoSplitVariable(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
- addObjective(String, String, String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument
-
DOCUMENT ME!
- addObserver(Observer) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
- addObserver(Observer) - Method in interface gov.nih.mipav.model.util.Observable
-
Adds an observer to the set of observers for this object, provided that it is not the same as some observer already in the set.
- ADDON - Variable in class gov.nih.mipav.model.algorithms.CVODES
- addon_message_table - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_error_mgr
- addOnNextLine(JComponent) - Method in class gov.nih.mipav.view.components.PanelManager
-
Adds a new component to the panel on a new line (vertically).
- addOnNextLine(JComponent, int) - Method in class gov.nih.mipav.view.components.PanelManager
-
Adds a new component to the panel on a new line (vertically).
- addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Helper method that adds components to the control panel for the grid bag layout.
- addOpacityControlPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Helper method that adds components to the control panel for the grid bag layout.
- addOTF(Integer, Integer, Integer, String, Boolean, Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument
-
DOCUMENT ME!
- addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
- addOutOfCorePoint(Point3D) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
- addOutputImage(String) - Method in class gov.nih.mipav.model.provenance.ProvenanceRecorder
- addPadding(ModelImage) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
Pad an image by copying the first and last slices 2 more times so that the laplacian algorithm behaves well in edge conditions.
- addParam - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
menu item for adding parameter.
- addParameter(String) - Method in class gov.nih.mipav.model.file.XMLPSet
-
Adds a new parameter to the set.
- AddParameter(Matrix, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.LinearCostFunction
- AddParameterBlock(double[], int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddParameterBlock(double[], int, CeresSolver.LocalParameterization) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddParameterBlock(int) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CostFunction
- addParameterData(String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.PSetDisplay
-
Adds a new row of parameter data to the display's table.
- addParentTag(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
- addPath(T, byte[]...) - Method in class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie
-
Store the given value at the specified path.
- AddPath(CAAMShape, CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Adds a path to the shape.
- addPixelLine(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.PixelGrid
- addPlate(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addPluginDirectory(String) - Static method in class gov.nih.mipav.plugins.PluginUtil
- addPluginToMenu(Class<?>, String, String, JMenu, ActionListener, String) - Method in class gov.nih.mipav.view.ViewUserInterface
- addPoint(float, float) - Method in class gov.nih.mipav.model.structures.TransferFunction
-
Adds a point to the function at the end.
- addPoint(float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate.LocalVolumeVOI
- addPoint(int, int) - Method in class gov.nih.mipav.model.structures.PointStack
-
Adds a point to the arrays.
- addPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManager
- addPoint(Vector2f) - Method in class gov.nih.mipav.model.structures.TransferFunction
-
Adds a point to the function at the end.
- addPointCursor - Static variable in class gov.nih.mipav.view.MipavUtil
-
Standard cursor: add a point (hand).
- addPointCursor - Variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
DOCUMENT ME!
- addPointFlag - Variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase
-
DOCUMENT ME!
- addPointFlag - Variable in class gov.nih.mipav.view.ViewJComponentHLUTBase
-
DOCUMENT ME!
- addPointToFunction(String) - Method in class gov.nih.mipav.model.file.FileImageXML
-
Adds a point to the function associated with the LUT or modelRGB.
- addPointToggleButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Toggle buttons for voi/points
- AddPolygonToList(ArrayList<ComputationalGeometry.ClipVertex>, ArrayList<ArrayList<ComputationalGeometry.MyVector2>>, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.GreinerHormann
- addPolyline() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
Add polyline to the render.
- addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeDTI
-
Add a polyline to the display.
- addPolyline(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Add a polyline to the VolumeDTI display.
- addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
- addPopup() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
- addPopup(VOIBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Link the popup menu to the input voi so the popup menu will operate on the input voi.
- addPreambleAndGroupTwoTags(DICOM_Object) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
-
Builds buffer of DICOM part 10 preamble and require Part 10 group 2 tags.
- addPresentationContext(DICOM_PresentationContext) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ
-
Adds a presentation object to a vector list of presentation contexts.
- addPresentationContextAccept(DICOM_PresentationContextAccept) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateAC
-
Adds the presentation context to the accepted context list.
- addProcessLoggingNotifier(JTextArea) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
-
a list of JTextAreas to be notified when a change in the process/output log is made. this permits almost-real-time updates to output devices this method adds the selected list of JTextAreas to receieve the output logs.
- addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Adds the ProgressChangeListener to this FileBase object.
- addProgressChangeListener(ProgressChangeListener) - Method in class gov.nih.mipav.model.file.FileBase
-
Adds the ProgressChangeListener to this FileBase object.
- addProject(String, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addProjectRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Dataset
-
DOCUMENT ME!
- addProvenanceChangeListener(ProvenanceChangeListener) - Method in class gov.nih.mipav.model.provenance.ProvenanceHolder
-
Adds a listener (JDialogDataProvenance) to receive notifications
- addProvenanceData(ProvenanceEntry) - Method in class gov.nih.mipav.view.dialogs.JDialogDataProvenance
-
Adds an entry to the Model (shows on table)
- addPset(String, XMLPSet) - Method in class gov.nih.mipav.model.file.FileInfoImageXML
- addQE(LODMesh.Quadric) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- AddRandomBlock(int, int, int, int, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
- addRawOptionsToParameters(ParameterTable, FileInfoBase) - Static method in class gov.nih.mipav.model.scripting.actions.ActionCreateBlankImage
-
Adds parameters to a table, describing a raw image.
- AddRealRoot(Vector<Double>, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- addRegion(int, int, int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation.RegionList
- addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
Panel to push/pull VOIs from full list to selectable list.
- addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
Panel to push/pull VOIs from full list to selectable list.
- addremove - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Panel to push/pull VOIs from full list to selectable list.
- addReplaceMatrix - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Add as New/Replace button (depending on selected matrix type).
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.CostFunction, CeresSolver.LossFunction, Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ProblemImpl
- AddResidualBlock(CeresSolver.ResidualBlock) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ParameterBlock
- address - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- AddResult(CAAMShape, CAAMShape, double, CAAMOptRes) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults
-
Adds a new result to the back.
- AddResults(CAAMEvaluationResults) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults
-
Adds a new set of results to the back.
- addROI(Integer, Integer, Integer, Integer, Integer, Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
-
DOCUMENT ME!
- addRow(ViewTableModel, Object[], boolean) - Static method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
Determines whether the given row should be shown.
- addRunnable(Runnable, String, int, int) - Method in class gov.nih.mipav.view.ViewJProgressBarMulti
-
Basic method for registering an algorithm to the multi-bar.
- addSaveOptionsToParameters(ParameterTable, FileWriteOptions, int[]) - Method in class gov.nih.mipav.model.scripting.actions.ActionSaveBase
-
Add the save options needed to record the saving of an image to a parameter table.
- addScaled(Polynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- addScaled(PPolynomial, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.PPolynomial
- AddScaled(NVectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.NVectorF
- AddScaled(Polynomial, double, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- AddScaled(Polynomial, double, Polynomial, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- AddScaled(Polynomial, Polynomial, double, Polynomial) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Polynomial
- AddScaled(VectorD, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorD
- AddScaled(VectorF, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VectorF
- addScannerLabels(String, Vector3f) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
-
DOCUMENT ME!
- addSchwarzChristoffelLines - Variable in class gov.nih.mipav.view.ViewJComponentGraph
- addScreen(Integer, String, String) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME
-
DOCUMENT ME!
- addScreenRef(Integer, Integer) - Method in class gov.nih.mipav.model.file.FileInfoOME.OME.Plate
-
DOCUMENT ME!
- addScriptActionLocation(String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader
-
Adds a new package where we should look for scriptable actions.
- addScriptRecordingListener(ScriptRecordingListener) - Method in class gov.nih.mipav.model.scripting.ScriptRecorder
-
Adds a class to the recorder's list of listeners.
- addScriptVOI(ScriptVOI) - Method in class gov.nih.mipav.view.dialogs.ScriptImage
- addScrollList(String) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView
-
DOCUMENT ME!
- addSegment(byte, byte[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentData
-
Adds segment bytes to the collection.
- addSegment(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
-
Adds a new line segment to this object.
- addSegment(Point2D, Point2D) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Lines
-
Adds a new line segment to this object.
- addSelectionPaths(TreePath[]) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
- addSeparator() - Method in class gov.nih.mipav.view.JScrollMenu
- addSeriesData(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
AddSeriesData This method populates the series table based upon the studyID.
- addSet - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
button for adding sets.
- addShape(Object, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip.ShapeHolder
-
DOCUMENT ME!
- AddShapeExtends(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Adds an extra outer path on each outer path in the distance of 'nPixels' along the point normal.
- addShortcut - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor
-
add shortcut button.
- addShortcut(String) - Static method in class gov.nih.mipav.view.Preferences
-
Adds a new shortcut to the hashtable. if there is already a command predefined for the keystroke set from
setShortcut(), it will be removed then replaced with the new command. - addShortcut(String, KeyStroke) - Static method in class gov.nih.mipav.view.Preferences
-
Adds a new shortcut to the hashtable with a given keystroke. if there is already a command predefined for the keystroke set from
setShortcut(), it will be removed then replaced with the new command. - addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.PlaneRender_WM
-
Adds the VolumeSlices object to the display list for rendering.
- addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
-
Adds the VolumeSlices object to the display list for rendering.
- addSlices(VolumeSlices) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Pass the VolumeSlices from the Volume Renderer to the PlaneRender objects.
- addSnpData(char[], int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Data
- addSortButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
-
DOCUMENT ME!
- addSpecular(SoftwareMaterial, SoftwareVertexProperty, Vector3f, float) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLight
-
Calculate the color due to specular lighting.
- addSphere(Vector3f, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- addSphereVOIs(VOI) - Method in interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameImage
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
- addSphereVOIs(VOI) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
- addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- addSplineControlPts(Vector<VOIWormAnnotation>) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Add a curve to the list.
- AddStandardHuffmanTables(libxl.jpeg_common_struct, boolean) - Method in class gov.nih.mipav.model.file.libxl
- addStatusPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
Method that adds components to the control paenl.
- addStringToTable(byte[]) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder
-
Add a new string to the string table.
- addStringToTable(byte[], byte) - Method in class gov.nih.mipav.model.file.TIFFLZWDecoder
-
Add a new string to the string table.
- addStudyData(FileInfoDicom) - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
Adds the study data to the table.
- addsub(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
- addsub(double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
- addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.ReminderThread
-
DOCUMENT ME!
- addSubscriber(Object, Method) - Method in class gov.nih.mipav.model.structures.TimeoutThread
-
DOCUMENT ME!
- addSubTree(Graph, Node, Node, Component[], int) - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
-
Function recursively creates a tree structure based on an array of menu components.
- addSurface - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
button for adding surfaces.
- addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Add surface to the volume image.
- addSurface() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface
-
Sets up the surface by setting the color of the material to black, setting the polygon to no cull-face and a fill mode, and allowing intersections in case we want picking ability.
- addSurface() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
Add surface to the volume image.
- addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
- addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- addSurface(SurfaceState) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
Add surfaces to the display list.
- addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Add TriMesh surfaces to the Volume Renderer.
- addSurface(SurfaceState, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
Add surfaces to the display list.
- addSurface(SurfaceState, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- addSurface(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML
-
Adds a surface path to the image's surface list.
- addSurface(String, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML.SurfaceDisplay
-
Add a surface to the table.
- addSurface(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Adding surface to the 3D texuture volume.
- addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
-
Add a surface to the display list.
- addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelGeodesic_WM
-
Add new mesh to the volume rendering.
- addSurface(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- addSurface(TriMesh, Vector3f) - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
-
Add the fly-through surface.
- addSurfaceMask(int, BitSet, ColorRGBA[], ColorRGBA) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
-
Adds a surface mask to this image.
- addSurfaces(SurfaceAttributes[], boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Adds an array of surfaces described by their SurfaceAttributes to the scene graph.
- addSurfaces(String, File) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Adding the surface with specific directory and file name.
- addSurfaces(TriMesh[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
Add surfaces to the Volume Tri-Planar renderer.
- addTab(String) - Method in class gov.nih.mipav.view.ViewJFrameMessage
-
Adds a tab to the MessageFrame tabbed pane with the given Title.
- addTabbedPane() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Called when the volumePositionFrame closes, the volumePositionPanel is again displayed in the window:.
- addToAvailableImageList(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel
-
DOCUMENT ME!
- addToAvailableImageList(String, String, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel
-
DOCUMENT ME!
- addToEnd() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram.GrayLevelClass
-
DOCUMENT ME!
- addToFile(Class, ArrayList<Class>) - Method in class gov.nih.mipav.plugins.ManifestFile
- addToList(Parameter) - Method in class gov.nih.mipav.model.scripting.parameters.ParameterList
-
Add a parameter to the end of the list.
- addToModelClip(BranchGroup) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Add a new branch group to model clip for clipping.
- addToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Add surface volume renderer control buttons.
- addToPane() - Method in class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer
-
Adds what the container just built (based on the given inputs) to the component barPanel.
- addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
Adds a component to the top panel.
- addTopPanel(Component, GridBagConstraints, int, int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
Adds a component to the top panel.
- addToTempDirList(String) - Static method in class gov.nih.mipav.view.ViewUserInterface
- addToTerminalNodes(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
- addTract() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
-
Updates the tract list user-interface.
- addTract(VOIContour, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
-
Adds a fiber bundle tract to the GPUVolumeRender and JPanelSurface.
- addTract(VOIContour, Polyline, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
Add tract into the DTI display
- addTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PresentationContext
-
Adds a new transfer syntax to the list (ie. vector)
- addTriangle(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
- addTriangle(delaunay.Site, delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
- addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredMeshData
- addTriangle(TriangleIndex, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.CoredVectorMeshData
- AddTriangle(ComputationalGeometry.HalfEdgeFace3, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.HalfEdgeData3
- AddTriangle(ComputationalGeometry.MyMeshVertex, ComputationalGeometry.MyMeshVertex, ComputationalGeometry.MyMeshVertex, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.HalfEdgeData3
- AddTriangle(ComputationalGeometry.MyMeshVertex, ComputationalGeometry.MyMeshVertex, ComputationalGeometry.MyMeshVertex, ComputationalGeometry.MeshStyle) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MyMesh
- AddTriangle(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.HalfEdgeData3
- AddTriangleIndices(double[], double, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
- AddTriangleIndices(float[], float, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
- AddTriangleIndices(int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
- AddTriangles(double[], double, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
- AddTriangles(float[], float, Triangle[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.MarchingCubes
- AddTriangles(CoredMeshData, Vector<CoredPointIndex>[], Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
- AddTriangles(CoredMeshData, Vector<CoredPointIndex>, Vector<Point3D>, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Octree
- AddTriangles(HashSet<ComputationalGeometry.Triangle3<ComputationalGeometry.MyMeshVertex>>, ComputationalGeometry.MeshStyle) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MyMesh
- AddTrianglesOppositePToStack(ComputationalGeometry.MyVector2, Stack<ComputationalGeometry.HalfEdge2>, ComputationalGeometry.HalfEdgeData2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.DelaunayIncrementalSloan
- addValue - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
112 - value to add to pixels.
- AddValueToAverage(double, double, double) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MathUtility
- addVarElem(String, int, int[], int) - Method in class gov.nih.mipav.model.file.FileInfoMinc
-
Puts a new variable element with the specified paramenters into the array at the given index.
- addVattElem(String, int, int, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem
-
Adds an attribute element to the variable attribute array.
- addVattValue(FileMincAttElem, Object, int) - Method in class gov.nih.mipav.model.file.FileMincVarElem
-
Sets the value of a variable attribute element.
- addVectorListener(VOIVectorListener) - Method in class gov.nih.mipav.model.structures.VOIVector
-
adds the update listener.
- addVertex(Vertex) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.Graph
- AddVertex(Vertex) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
- AddVertex(Vertex, double) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WeightedGraph
- AddVertexAndReturnIndex(ComputationalGeometry.MyMeshVertex, ComputationalGeometry.MeshStyle) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MyMesh
- AddVertexFromLookup(ComputationalGeometry.MyMeshVertex, Hashtable<ComputationalGeometry.MyMeshVertex, Integer>) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MyMesh
- addVOI(ModelImage, VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- addVOI(VOI) - Method in class gov.nih.mipav.model.structures.VOIVector
-
Adds voi to the voi vector
- addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface
- addVOI(VOIBase, boolean, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
-
Add a new VOIBase.
- addVOI(String) - Method in class gov.nih.mipav.model.file.FileInfoImageXML
-
Adds a voi path to the image's VOI list.
- addVOI(String, String, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel
-
DOCUMENT ME!
- addVOIListener(VOIListener) - Method in class gov.nih.mipav.model.structures.VOI
-
adds the update listener.
- addVOIManager(ModelImage, ModelImage, Component, ScreenCoordinateListener, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
- addVOIPoint(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Adds a point to the current voi.
- addVOIs(VOIVector) - Method in class gov.nih.mipav.model.structures.ModelImage
-
adds VOI vector for with new VOIs.
- addVOIS(VOIVector, Vector<String>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- addVOIsToCED() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- addVOIUpdateListener(UpdateVOISelectionListener) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
-
Adds a UpdateVOISelectionListener.
- addVOIUpdateListener(UpdateVOISelectionListener) - Method in interface gov.nih.mipav.view.VOIHandlerInterface
-
Add a UpdateVOISelectionListener so it will receive VOI selection updates.
- addVolumeVOI(VolumeVOI) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- addWhiteListedKeys(ArrayList<FileDicomKey>, ArrayList<String>) - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
-
Deprecated.
- adids - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- aDiff - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.ConvAndLinear
- adj(double[]) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution.DiscretInteg
- ADJ_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes
-
Use adjacency model to perform triangle consistency.
- adj_ranks - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- adjacencies - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
- adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
- adjacencyCount - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
- AdjacencyCountFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
- AdjacencyCountFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencyCountFunction
- AdjacencySetFunction - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
- AdjacencySetFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AdjacencySetFunction
- adjacent - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.qlgraph
- ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- ADJACENT - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- ADJACENT_BACK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
-
Copy adjacent slice.
- ADJACENT_DOWN - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice
-
Copy adjacent slice.
- ADJACENT_DOWN_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- ADJACENT_NEXT - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
-
Copy adjacent slice.
- ADJACENT_UP - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice
-
Copy adjacent slice.
- ADJACENT_UP_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- adjacentDown - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
DOCUMENT ME!
- adjacentImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
DOCUMENT ME!
- adjacentUp - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- adjCfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjE(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjGKN(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference
-
adjusted image.
- adjInvF(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjMark - Variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
number of VOIs for adjustable slice
- adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- adjMark - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- ADJMARK - Static variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
DOCUMENT ME!
- ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- ADJMARK - Static variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
adjusted marker type.
- adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- adjMarkButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- adjMarkMinusButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- adjncy - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
- adjPPFT(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjRadon(double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjU(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- adjust_amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
- adjustBins(int[], int[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
- adjustExp - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
adjust exp *
- adjustExp - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
adjust exp *
- adjustExp - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage
-
adjust exp *
- adjustExpPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
panels *
- adjustExpPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
panels *
- adjustExpSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
various sliders in dialog *
- adjustExpSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
various sliders in dialog *
- adjustExpTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
textfields *
- adjustExpTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
textfields *
- adjustGradientBins(VabraVolumeCollection, double, double, double, int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
- adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ColorWheel
-
adjust green intensity
- adjustGreen(float, float, float) - Method in class gov.nih.mipav.view.ViewJComponentDTIImage
-
adjust green intensity
- adjustmentValueChanged(AdjustmentEvent) - Method in class gov.nih.mipav.view.ScrollCorrector
-
DOCUMENT ME!
- adjustOpacityFor000Color() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
-
>>>>>>> .r533 The purpose of this method is to examine both LUTs to determine if they are zero-based, that is, if they map values of zero to the color R=0, G=0, B=0.
- adjustOrigBins(int, int, int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
- adjustPvalues(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
- adjustScrollbars(int, int) - Method in class gov.nih.mipav.view.ViewJFrameImage
-
DOCUMENT ME!
- adjustScrollbars(int, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
This method adjust the scrollbars to area where user clicked when doing individual frame zooming in and out.
- adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
-
DOCUMENT ME!
- adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
-
DOCUMENT ME!
- adjustScrollbars(int, int, JScrollPane) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
DOCUMENT ME!
- adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D
- adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
- adjustTranslation(TransMatrixd, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
-
Adjust the translation of the transformation matrix by the sample pararmeter.
- adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
- adjustTranslation(TransMatrixd, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
- adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
- adjustVOIs(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
When user draws the 3 VOIs out of order, adjust the VOIs in ascending order
- adjwgt - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
- admm_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ADMM_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- admm_seq_conv_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ADMM_SEQ_CONV_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- Adobe_transform - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- AdobeJpegDescriptor(MetadataExtractor.AdobeJpegDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDescriptor
- AdobeJpegDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegDirectory
- AdobeJpegReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AdobeJpegReader
- AdobeJpegReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AdobeJpegReaderTest
- adOpDialog - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- adOpString - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- adOpString - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator
-
Advanced function string.
- adp_step_pgd_stop_func(int[], String[], NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.stop_opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- adub - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
- adv(int, int[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMSER
-
Advance N-dimensional subscript
- advance_position() - Method in class gov.nih.mipav.model.file.charls
- advance_position(int) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- advance_position(int) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_writer
- ADVANCED - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- advancedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageCalculator
-
DOCUMENT ME!
- advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
Variables for Advanced Settings dialog.
- advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
-
Variables for Advanced Settings dialog.
- advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
Variables for Advanced Settings dialog.
- advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Variables for Advanced Settings dialog.
- advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
Variables for Advanced Settings dialog.
- advancedDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
Variables for Advanced Settings dialog.
- advanceVOIUID() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
-
Increments the VOI uid for internal tracking, used during both creation and loading of a new VOI
- AdvancingFront - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
- AdvancingFront(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- AdvancingFront.AdvancingTest - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
- AdvancingTest(TriMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront.AdvancingTest
- advDecOptDialog - Variable in class gov.nih.mipav.model.file.FileJP2
-
The height of image
- adwgts - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- AE - Enum constant in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR
- aExp - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- afc(Vector<Integer>, Vector<Integer>, Vector<Integer>, Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
- afcmAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
DOCUMENT ME!
- affiliation - Variable in class gov.nih.mipav.model.file.FileInfoImageXML.Investigator
-
Affiliation of investigator.
- affine - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
- Affine() - Constructor for class gov.nih.mipav.model.algorithms.SIFT3D.Affine
- AFFINE - Enum constant in enum gov.nih.mipav.model.algorithms.SIFT3D.tform_type
- Affine_set_mat(SIFT3D.Mat_rm, SIFT3D.Affine) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- affineTransform(double[][]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
The input 4x4 homogeneous matrix H is assumed to multiply vectors V as H*V where V = (x,y,z,1).
- affineTransform(float[][], float[], float[]) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
Rotation R is 3x3, translation T is 3x1, and scale S is 3x1.
- AFInfo() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.AFInfo
- AFNI - Static variable in class gov.nih.mipav.model.file.FileUtility
-
AFNI file type. extension: .head, .brik
- AFNI_ACPC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
AFNI view type ACPC.
- AFNI_ORIG - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
AFNI view type Original.
- AFNI_TLRC - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
AFNI view type Talairach.
- afniEnabled - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveSlices
-
DOCUMENT ME!
- afniGroup - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- afniGroupArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
- AFNIOrigExtents - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- AFNIOrigResolutions - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- AFNITypeString - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- AFNIViewType - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- AFPintoDFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency
-
DOCUMENT ME!
- AFPintoDFP - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- AFPintoFRET - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency
-
DOCUMENT ME!
- AFPintoFRET - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- AFTER - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties
-
Before/After index values for the two displayed spheres, canvases, and display panels:.
- AFTER - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
-
Before/After index values for the two displayed spheres, canvases, and display panels:.
- after_end_of_image - Enum constant in enum gov.nih.mipav.model.file.charls.state
- afterExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
- afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
- afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
- afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
- afterExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
- afterThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
- afTimeC - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- AFV_BASIS - Variable in class gov.nih.mipav.model.file.jxlatte.PassGroup
- AFV0 - Enum constant in enum gov.nih.mipav.model.file.jxlatte.TransformType
- AFV1 - Enum constant in enum gov.nih.mipav.model.file.jxlatte.TransformType
- AFV2 - Enum constant in enum gov.nih.mipav.model.file.jxlatte.TransformType
- AFV3 - Enum constant in enum gov.nih.mipav.model.file.jxlatte.TransformType
- afvFreqs - Variable in class gov.nih.mipav.model.file.jxlatte.HFGlobal
- agastDetector_5_8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
- AgastDetector5_8 - Class in gov.nih.mipav.model.algorithms
-
agast5 - AGAST, an adaptive and generic corner detector based on the accelerated segment test for a 8 pixel mask Copyright (c) 2010, Elmar Mair All rights reserved.
- AgastDetector5_8(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AgastDetector5_8
- agcieAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGCIE
-
DOCUMENT ME!
- Age() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
- Age(int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Age
- AgeTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.AgeTest
- AgglomerativeInformationBottleneck - Class in gov.nih.mipav.model.algorithms
-
Copyright (C) 2007-11, Andrea Vedaldi and Brian Fulkerson Copyright (C) 2012-13, The VLFeat Team All rights reserved.
- AgglomerativeInformationBottleneck() - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
- AgglomerativeInformationBottleneck(ModelImage, int, int, double[][], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
- AgglomerativeInformationBottleneck.VlAIB - Class in gov.nih.mipav.model.algorithms
-
------------------------------------------------------------------
- AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
- AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
- AGGREGATED - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
- AGGREGATED_CIRCLES_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
- AGGREGATED_ELLIPSE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
- AGGREGATED_ELLIPSE_RANDOM_ORIENTATION - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
- AGGREGATED_ELLIPSE_RANDOM_ORIENTATION_DIFFERENT_SIZES - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
- aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
- aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
- aggregatedButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
- aggregatedCirclesDifferentSizesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
- aggregatedEllipseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
- aggregatedEllipseRandomOrientationButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
- aggregatedEllipseRandomOrientationDifferentSizes - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
- agvfAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF
-
DOCUMENT ME!
- Ah - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
-
DOCUMENT ME!
- aheAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
DOCUMENT ME!
- ai - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- aicAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
-
DOCUMENT ME!
- AICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- AICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- AIF_conc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_diffPeak - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_enable - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_fit_cv_est_parGV - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_fit_gv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_fit_parameters - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_fit_weights - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_nSlice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_nSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
- aif_nSliceLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
- aif_nSliceText - Variable in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
- aif_nVoxelMax - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_nVoxelMin - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_pArea - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_pReg - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_pTTP - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_recirculation - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_ROI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_ROI_x - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_ROI_y - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_semiMajorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aif_semiMinorAxis - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIF_voxels - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- AIFslice - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
- aimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- Ain - Variable in class gov.nih.mipav.model.algorithms.ModifiedCholeskyFactorization
- aindaneAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
-
DOCUMENT ME!
- airPressure - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
- AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
Airy function Ai.
- AIRY_AI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
Airy function Ai.
- AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
Airy function Bi.
- AIRY_BI - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
Airy function Bi.
- aj - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- ak - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- aki - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- akMVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines
-
Array of mesh points.
- akNormal - Static variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
normal vector arrayes.
- akPVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines
-
Array of plane points.
- akr - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- akSVertex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalMesh.Polylines
-
Array of sphere points.
- Al - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
- Al - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- aLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
- alertBackground(JTextField, boolean) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
- alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with ier[0] = 6.
- alfa - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
parameter in the weight function, alfa.gt.(-1) if alfa.le.(-1), the routine will end with errorStatus = 6.
- ALFA02 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
- ALFA12 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
- alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- alfkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- alfkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- alfnoi - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- alg - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
-
handle to BSE Algorithm *
- alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- alg - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- alg - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
handle to the algorithm *
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator
-
handle to alg
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
handle to algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
-
algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
-
algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
-
algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
handle to the algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
-
handle to algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
-
handle to algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
-
handle to algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
-
handle to algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
handle to algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
algorithm
- alg - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation
-
algorithm
- alg - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
handle to the algorithm *
- alg - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
DOCUMENT ME!
- alg - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
DOCUMENT ME!
- alg_name - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- alg2D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
- alg3D - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
- ALGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- algCont - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
-
List of containers that hold all the information to correctly draw each progress bar
- algdiv(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- algList - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
-
List containing which runnables are registered to this listener
- algo - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
- algo - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- algo - Variable in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
- algo - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
-
Use serialVersionUID for interoperability.
- algo - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
-
Use serialVersionUID for interoperability.
- algo - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- algoAutoCorrelation - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation
-
DOCUMENT ME!
- algoAutoCovariance - Variable in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance
-
DOCUMENT ME!
- algoColorEdge - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
DOCUMENT ME!
- AlgoContainer(String, int, int) - Constructor for class gov.nih.mipav.view.ViewJProgressBarMulti.AlgoContainer
- algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation
-
Algorithm that implement cost functions, either a AlgorithmCostFunctions or AlgorithmCostFunctions2D
- algoCost - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
Is either a AlgorithmCostFunction or a AlgorithmCostFunctions2D depending on images
- algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
- algoCost - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
- algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
-
DOCUMENT ME!
- algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
- algoGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
- algoLocal - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
DOCUMENT ME!
- algoPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
-
DOCUMENT ME!
- algoQuantify - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify
-
DOCUMENT ME!
- algoRegVOILankmark - Variable in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark
-
DOCUMENT ME!
- algoReplace - Variable in class gov.nih.mipav.view.dialogs.JDialogReplaceValue
-
DOCUMENT ME!
- algorID - Variable in class gov.nih.mipav.model.algorithms.AlgorithmImageHessian
-
DOCUMENT ME!
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
-
DOCUMENT ME!
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
-
algorithm type (i.e. erode, dilate)
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
-
algorithm type (i.e. erode, dilate)
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
-
DOCUMENT ME!
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
algorithm type (i.e. erode, dilate)
- algorithm - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
algorithm type (i.e. erode, dilate)
- algorithm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
- algorithm - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
- algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
- algorithm - Variable in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
- algorithm_type - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
- Algorithm4DImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities
- Algorithm4DImageCalculator() - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator
-
constructor
- Algorithm4DImageCalculator(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator
-
constructor
- AlgorithmActiveContoursWithoutEdges - Class in gov.nih.mipav.model.algorithms
- AlgorithmActiveContoursWithoutEdges(ModelImage, ModelImage, int, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
- AlgorithmAdaptiveKuwaharaFilter - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm is created from the description provided in the article: "Adaptive Kuwahara Filter" by Krzysztof Bartyzel, Published online July 6, 2015.
- AlgorithmAdaptiveKuwaharaFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
- AlgorithmAdaptiveKuwaharaFilter(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAdaptiveKuwaharaFilter
- AlgorithmAddMargins - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm to add or remove margins around the image.
- AlgorithmAddMargins(ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins
-
Add or remove margins from the srcImage.
- AlgorithmAddMargins(ModelImage, ModelImage, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins
-
Add or remove margins from the srcImage and store the results in the destImage.
- AlgorithmAGCIE - Class in gov.nih.mipav.model.algorithms
- AlgorithmAGCIE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
-
Reference: An Adaptive Gamma Correction for Image Enhancement by Shanto Rahman, Md Mostafijur Rahman, M.
- AlgorithmAGCIE(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGCIE
- AlgorithmAGVF - Class in gov.nih.mipav.model.algorithms
-
Snake-like algorithm deriviative.
- AlgorithmAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Creates a new AlgorithmAGVF object.
- AlgorithmAHE - Class in gov.nih.mipav.model.algorithms
-
algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
- AlgorithmAHE(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
Constructor for images in which changes are returned to the source image.
- AlgorithmAHE(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
Constructor for images in which changes are placed in a predetermined destination image.
- AlgorithmAHElocal - Class in gov.nih.mipav.model.algorithms
-
algorithm to apply an adaptive histogram to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
- AlgorithmAHElocal(ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
Constructor for images in which changes are returned to the source image.
- AlgorithmAHElocal(ModelImage, ModelImage, int, int, boolean, boolean, float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
Constructor for images in which changes are placed in a predetermined destination image.
- AlgorithmAINDANE - Class in gov.nih.mipav.model.algorithms
- AlgorithmAINDANE() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
- AlgorithmAINDANE(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
- AlgorithmAnisotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm anisotropically diffuses an image.
- AlgorithmAnisotropicDiffusion(ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
-
Creates a new AlgorithmAnisotropicDiffusion object.
- AlgorithmAnisotropicDiffusion(ModelImage, ModelImage, float[], int, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
-
Creates a new AlgorithmAnisotropicDiffusion object.
- AlgorithmAntigradient2 - Class in gov.nih.mipav.model.algorithms
-
This is a port of the files anitgradient2.m and antigradient2.c created by Gunnar Farneback in the Spatial domain toolbox at http://www.imt.liu.se/mi/Tools.
- AlgorithmAntigradient2() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
- AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
- AlgorithmAntigradient2(ModelImage, ModelImage, boolean, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
- AlgorithmAnyTwoImagesSNR - Class in gov.nih.mipav.model.algorithms
- AlgorithmAnyTwoImagesSNR(ModelImage, ModelImage, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR
-
Creates a new AlgorithmAnyTwoImagesSNR object.
- AlgorithmArcLength - Class in gov.nih.mipav.model.algorithms
-
This algorithm calculates the arc-length of a Bspline fit to user defined control points.
- AlgorithmArcLength(float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength
-
Algorithm constructor.
- AlgorithmArcLength(float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmArcLength
-
Algorithm constructor.
- AlgorithmASM - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM
- AlgorithmASM.AppData - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.ASMData - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.FileMATLAB - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.LandData - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.Options - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.P - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.PData - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.SData - Class in gov.nih.mipav.model.algorithms
- AlgorithmASM.TData - Class in gov.nih.mipav.model.algorithms
- AlgorithmAutoCorrelation - Class in gov.nih.mipav.model.algorithms
-
Reference: Digital Image Processing, Second Edition by Rafael C.
- AlgorithmAutoCorrelation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
Constructor for black and white image in which correlation coefficients are placed in a predetermined destination image.
- AlgorithmAutoCorrelation(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
Constructor for color image in which correlation coefficients are placed in predetermined destination images.
- AlgorithmAutoCorrelation.FitCorrelationModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmAutoCovariance - Class in gov.nih.mipav.model.algorithms
-
let deli(x,y) = (i(x,y) - invalid input: '<'i(x,y)>)/invalid input: '<'i(x,y)> where the angle brackets are used to denote a spatial average.
- AlgorithmAutoCovariance(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
Constructor for black and white image in which covariance coefficients are placed in a predetermined destination image.
- AlgorithmAutoCovariance(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
Constructor for color image in which covariance coefficients are placed in predetermined destination images.
- AlgorithmAutoCovariance.FitCovarianceModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmAutoSeedWatershed - Class in gov.nih.mipav.model.algorithms
-
This is a port of the file AutoSeedWatershed.cpp which calls openCV written by Ravimal Bandara.
- AlgorithmAutoSeedWatershed(ModelImage, ModelImage, float, float, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmAutoSeedWatershed
-
Constructs new watershed algorithm.
- AlgorithmBarrelDistortion - Class in gov.nih.mipav.model.algorithms
-
Corrects barrel and/or pin cushion distortion for 2D images.
- AlgorithmBarrelDistortion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
-
AlgorithmBarrelDistortion - default constructor.
- AlgorithmBarrelDistortion(ModelImage, ModelImage, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
-
AlgorithmBarrelDistortion.
- AlgorithmBase - Class in gov.nih.mipav.model.algorithms
-
Base abstract class for algorithms.
- AlgorithmBase() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Default constructor which sets thread stopped to false, source and destination images to null, and destination flag to false.
- AlgorithmBase(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Constructor which sets thread stopped to false and sets source and destination images.
- AlgorithmBilateralFilter - Class in gov.nih.mipav.model.algorithms.filters
-
Bilateral filtering smooths an image or VOI region of the image while preserving edges with 2 Gaussian functions.
- AlgorithmBilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- AlgorithmBilateralFilter(ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
-
Creates a new AlgorithmBilateralFilter object.
- AlgorithmBilateralFilter(ModelImage, ModelImage, float[], float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
-
Constructor which sets the source and destination images, the minimum and maximum progress value.
- AlgorithmBoundaryAttenuation - Class in gov.nih.mipav.model.algorithms.filters
-
Attenuate around the boundary of an object defined by a VOI in an image volume.
- AlgorithmBoundaryAttenuation(ModelImage, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation
-
Set up the algorithm.
- AlgorithmBoxCount - Class in gov.nih.mipav.model.algorithms
- AlgorithmBoxCount(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
- AlgorithmBrainExtractor - Class in gov.nih.mipav.model.algorithms
-
A class for segmenting the brain from a 3D MRI.
- AlgorithmBrainExtractor(ModelImage, int, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
-
Create an extractor for segmenting the brain from a 3D magnetic resonance image.
- AlgorithmBrainExtractor(ModelImage, int, TriMesh, int, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
-
Create an extractor for segmenting the brain from a 3D magnetic resonance image.
- AlgorithmBrainExtractor.Edge - Class in gov.nih.mipav.model.algorithms
-
A representation of an edge for the vertex-edge-triangle table.
- AlgorithmBrainExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms
-
An unordered set of 'int' stored in an array.
- AlgorithmBrainSurfaceExtractor - Class in gov.nih.mipav.model.algorithms
-
This class provides an implementation of a second method for segmentation of the brain from a 3D MRI, as opposed to the BET algorithm implemented in AlgorithmBrainExtractor.
- AlgorithmBrainSurfaceExtractor(ModelImage, int, float, float, boolean, int, float, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
Create an extractor for segmenting the brain from a 3D magnetic resonance image.
- AlgorithmBRISK - Class in gov.nih.mipav.model.algorithms
-
BRISK - Binary Robust Invariant Scalable Keypoints Reference implementation of [1] Stefan Leutenegger,Margarita Chli and Roland Siegwart, BRISK: Binary Robust Invariant Scalable Keypoints, in Proceedings of the IEEE International Conference on Computer Vision (ICCV2011).
- AlgorithmBRISK() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
-
AlgorithmBRISK - default constructor.
- AlgorithmBRISK(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
- AlgorithmBRISK(ModelImage, ModelImage, boolean, int, int, int, boolean, boolean, double, Vector<Double>, Vector<Integer>, double, double, Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK
- AlgorithmBRISK.BriskLayer - Class in gov.nih.mipav.model.algorithms
- AlgorithmBRISK.BriskLongPair - Class in gov.nih.mipav.model.algorithms
- AlgorithmBRISK.BriskPatternPoint - Class in gov.nih.mipav.model.algorithms
- AlgorithmBRISK.BriskShortPair - Class in gov.nih.mipav.model.algorithms
- AlgorithmBRISK.KeyPoint - Class in gov.nih.mipav.model.algorithms
- algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Compute the brute-force solution.
- algorithmBruteForce() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Compute the brute-force solution.
- AlgorithmBSmooth - Class in gov.nih.mipav.model.algorithms
-
Smoothing of VOI using 1 iteration of bSplines.
- AlgorithmBSmooth() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
- AlgorithmBSmooth(ModelImage, VOI, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
-
Creates a new AlgorithmBSmooth object.
- AlgorithmBSnake - Class in gov.nih.mipav.model.algorithms
-
Snake-like algorithm derivative using BSplines.
- AlgorithmBSnake(ModelImage, float[], int, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSnake
-
Set up the snake algorithm so that it can be run.
- AlgorithmBSpline - Class in gov.nih.mipav.model.algorithms
-
Modified code from Aaron Carass's Java implementation of Philippe Thevenaz's Cubic B-spline Interpolation.
- AlgorithmBSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
default constructor.
- AlgorithmBSpline.ColorInterpolation - Class in gov.nih.mipav.model.algorithms
- AlgorithmBSplineControlPointImageFilter - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmBSplineControlPointImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
- AlgorithmBSplineScatteredDataPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmBSplineScatteredDataPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
- AlgorithmCannyEdgeDetection - Class in gov.nih.mipav.model.algorithms
- AlgorithmCannyEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection
-
AlgorithmCannyEdgeDetection - default constructor.
- AlgorithmCannyEdgeDetection(ModelImage, ModelImage, double, double, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCannyEdgeDetection
-
AlgorithmCannyEdgeDetection.
- AlgorithmCellTrackingAGVF - Class in gov.nih.mipav.model.algorithms
-
Active Contour class optimized for Cell Tacking, based on the following paper:
- AlgorithmCellTrackingAGVF(ModelImage, ModelImage, float[], int, int, float, float, VOI, boolean, float, float, float, float, boolean, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCellTrackingAGVF
-
Creates a new AlgorithmCellTrackingAGVF object.
- AlgorithmCenterOfMass - Class in gov.nih.mipav.model.algorithms
-
This algorithm calculates the center of mass for 2D and 3D black and white images.
- AlgorithmCenterOfMass(ModelImage, float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass
-
Creates a new AlgorithmCenterOfMass object.
- AlgorithmCenterOfMassRGB - Class in gov.nih.mipav.model.algorithms
-
* This algorithm calculates the red, green, and blue center of mass for 2D and 3D color images.
- AlgorithmCenterOfMassRGB(ModelImage, float[], float[], float[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB
-
Default constructor for running algorithm to calculate red, green, and blue centers of mass.
- AlgorithmChangeType - Class in gov.nih.mipav.model.algorithms.utilities
-
This is a convenience function to convert from one image type to another and remap the data into a new range.
- AlgorithmChangeType(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType
-
Creates a new AlgorithmChangeType object.
- AlgorithmChangeType(ModelImage, ModelImage, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType
-
Creates a new AlgorithmChangeType object.
- AlgorithmCircleGeneration - Class in gov.nih.mipav.model.algorithms
-
This module draws uniformly randomly positioned circles with a specified radius.
- AlgorithmCircleGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
-
AlgorithmCircleGeneration - default constructor.
- AlgorithmCircleGeneration(ModelImage, int, int, int, int, double, double, double, double, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration
-
AlgorithmRandomCircleGeneration.
- AlgorithmCircleGeneration.erfcModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmCircleGeneration.erfcModel2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmCircleGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
- AlgorithmCircleGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmCircleToRectangle - Class in gov.nih.mipav.model.algorithms
-
References: 1.)
- AlgorithmCircleToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle
-
AlgorithmCircleToRectangle - default constructor.
- AlgorithmCircleToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircleToRectangle
-
AlgorithmCircleToRectangle.
- AlgorithmCircularSectorToRectangle - Class in gov.nih.mipav.model.algorithms
-
This software uses 2D conformal mapping in converting a circular sector defined by 4 user points at the sector corners to a rectangle of user specified size.
- AlgorithmCircularSectorToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle
-
AlgorithmCircularSectorToRectangle - default constructor.
- AlgorithmCircularSectorToRectangle(ModelImage, ModelImage, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCircularSectorToRectangle
-
AlgorithmCircularSectorToRectangle.
- AlgorithmCoherenceEnhancingDiffusion - Class in gov.nih.mipav.model.algorithms.filters
-
Algorithm to apply Coherence Enhancing Anisotropic Diffusion
- AlgorithmCoherenceEnhancingDiffusion(ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion
-
Creates a new AlgorithmCoherenceEnhancingDiffusion object.
- AlgorithmCoherenceEnhancingDiffusion(ModelImage, ModelImage, int, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmCoherenceEnhancingDiffusion
-
Creates a new AlgorithmCoherenceEnhancingDiffusion object.
- AlgorithmColocalizationEM - Class in gov.nih.mipav.model.algorithms
-
An optional registration may be performed before colocalization.
- AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
Constructor for images in which 2D histogram is placed in a predetermined destination image.
- AlgorithmColocalizationEM(ModelImage, ModelImage, ModelImage, ModelImage, int, int, float, float, boolean, int, int, int, int, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
Constructor for images in which 2D histogram is placed in a predetermined destination image.
- AlgorithmColocalizationRegression - Class in gov.nih.mipav.model.algorithms
-
This algorithm creates a 2D histogram from 2 colors of a single image or from 2 black and white images and uses an orthogonal line fit of the histogram data to generate a correlation line thru the histogram.
- AlgorithmColocalizationRegression(ModelImage, ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
Constructor for images in which 2D histogram is placed in a predetermined destination image.
- AlgorithmColocalizationRegression(ModelImage, ModelImage, BitSet, int, int, float, float, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
Constructor for images in which 2D histogram is placed in a predetermined destination image.
- AlgorithmColorEdge - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm uses a hypercomplex filter to find the edges between a region of two user specified colors.
- AlgorithmColorEdge(ModelImage, ModelImage, long, long, long, long, long, long) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
-
This constructor initialises a Color Edge algorithm for a source and destination image, and ensures that the destination image is
ModelStorageBase.UBYTE. - AlgorithmColorSaturation - Class in gov.nih.mipav.model.algorithms
-
This algorithm changes the saturation of a color image while keeping the hue and intensity constant.
- AlgorithmColorSaturation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation
-
AlgorithmColorSaturation - default constructor.
- AlgorithmColorSaturation(ModelImage, ModelImage, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmColorSaturation
-
AlgorithmColorSaturation.
- AlgorithmComplexConcat - Class in gov.nih.mipav.model.algorithms.utilities
-
Simple algorithm that generates a complex image from real data and imaginary data.
- AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat
-
Creates a new AlgorithmRGBConcat object.
- AlgorithmComplexConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat
-
Creates a new AlgorithmRGBConcat object.
- AlgorithmComplexToReal - Class in gov.nih.mipav.model.algorithms.utilities
-
Simple algorithm that converts an RGB image to a single greyscale image.
- AlgorithmComplexToReal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Creates a new AlgorithmComplexToReal object.
- AlgorithmComplexToReal(ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Creates a new AlgorithmComplexToReal object.
- AlgorithmComplexToReal(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Creates a new AlgorithmComplexToReal object.
- AlgorithmComplexToReal(ModelImage, ModelImage, float, float, float, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Creates a new AlgorithmComplexToReal object.
- AlgorithmConcat - Class in gov.nih.mipav.model.algorithms.utilities
-
Assumes the pixel resolutions are equal.
- AlgorithmConcat(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
Creates a new AlgorithmConcat object.
- AlgorithmConcatMult - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmConcatMult() - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult
- AlgorithmConcatMult2Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D
-
constructor
- AlgorithmConcatMult2Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult2Dto3D
-
constructor
- AlgorithmConcatMult3Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D
-
constructor
- AlgorithmConcatMult3Dto3D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto3D
-
constructor
- AlgorithmConcatMult3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D
-
constructor
- AlgorithmConcatMult3Dto4D(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcatMult3Dto4D
-
constructor
- AlgorithmConstELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms
-
Runs ELSUNC for a 3D image.
- AlgorithmConstELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
- AlgorithmConstELSUNCOpt3D.FitOAR3DConstrainedModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmConstPowellOpt3D - Class in gov.nih.mipav.model.algorithms
-
Runs Powell's method for a 3D image.
- AlgorithmConstPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOpt3D
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
- AlgorithmConstPowellOptBase - Class in gov.nih.mipav.model.algorithms
-
Powell's Method
- AlgorithmConstPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], double[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
- AlgorithmConstrainedELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmConstrainedELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmConstrainedELSUNCOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration
-
Helper class to make it easy to store the necessary information about a minimum.
- AlgorithmConstrainedOAR3D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmConstrainedOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmConstrainedOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, int, int, int, float[][], boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmConstrainedOAR3D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration
-
Helper class to make it easy to store the necessary information about a minimum.
- AlgorithmContrastEnhancementUsingExposureFusion - Class in gov.nih.mipav.model.algorithms
- AlgorithmContrastEnhancementUsingExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- AlgorithmContrastEnhancementUsingExposureFusion(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- AlgorithmContrastEnhancementUsingExposureFusion.kFitting - Class in gov.nih.mipav.model.algorithms
- AlgorithmConvergenceField - Class in gov.nih.mipav.model.algorithms
- AlgorithmConvergenceField(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvergenceField
- AlgorithmConvert3Dto4D - Class in gov.nih.mipav.model.algorithms.utilities
-
Converts a 3D dataset that is really a 4D dataset into a 4D dataset.
- AlgorithmConvert3Dto4D(ModelImage, int, float, float, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D
-
Constructs new algorithm and sets source.
- AlgorithmConvert4Dto3D - Class in gov.nih.mipav.model.algorithms.utilities
-
The image is converted from a 4D to a 3D image.
- AlgorithmConvert4Dto3D(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D
-
Constructs new algorithm and sets source.
- AlgorithmConvert4Dto3D(ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert4Dto3D
-
Constructs new algorithm and sets source.
- AlgorithmConvolver - Class in gov.nih.mipav.model.algorithms
-
Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
- AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], float[], float[], float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], float[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
-
Sets the source and kernel images and calls the appropriate method based on image dimensionality.
- AlgorithmConvolver(ModelImage, float[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- AlgorithmCorrectSpacing - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm to adjust image volume for cases when the slice spacing is not equal to the slice thickness.
- AlgorithmCorrectSpacing(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCorrectSpacing
-
Import source image into the class.
- AlgorithmCostFunctions - Class in gov.nih.mipav.model.algorithms
-
CostFunction - class for specifying optimization function.
- AlgorithmCostFunctions(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
Creates a new AlgorithmCostFunctions object.
- AlgorithmCostFunctions2D - Class in gov.nih.mipav.model.algorithms
-
CostFunction - class for specifying optimization function.
- AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
- AlgorithmCostFunctions2D(ModelSimpleImage, ModelSimpleImage, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
Creates a new AlgorithmCostFunctions2D object.
- AlgorithmCrop - Class in gov.nih.mipav.model.algorithms.utilities
-
Crops 2D and 3D images using a supplied VOI.
- AlgorithmCrop(ModelImage, ModelImage, int, int[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
Creates new algorithms to crop image by specified bounds.
- AlgorithmCropTilted - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm to crop a tilted rectangle
- AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
-
Rotate tilted cuboid to remove tilt and crop cuboid.
- AlgorithmCropTilted(ModelImage, double, double, double, double, double, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted
-
Rotate tilted rectangle to remove tilt and crop rectangle.
- AlgorithmCubicLagrangian - Class in gov.nih.mipav.model.algorithms
-
This is a polynomial p of degree 3 which interpolates a given function f at the points x(-1), x(0), x(1), and x(2), and is given by p(x) = sum from i = -1 to i = 2 of li(x)*f(xi), where li, i = -1,0,1,2, which are called the fundamental polynomials, are given by li(x) = product from k = -1 to k = 2 for k !
- AlgorithmCubicLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian
-
AlgorithmCubicLagrangian - default constructor.
- AlgorithmCumulativeHistogram - Class in gov.nih.mipav.model.algorithms
- AlgorithmCumulativeHistogram(ModelHistogram, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram
-
Constructor for RGB image.
- AlgorithmCumulativeHistogram(ModelHistogram, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmCumulativeHistogram
-
Constructor for grey scale image
- AlgorithmCyclicPermutation - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmCyclicPermutation(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmCyclicPermutation
- AlgorithmDConvolver - Class in gov.nih.mipav.model.algorithms
-
Convolves kernel with a 2D or 3D image - only pixels where the kernel is completely contained in the image are convolved, otherwise they are set to zero.
- AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], boolean, int[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], double[], double[], double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], double[], double[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
-
Sets the source and kernel images and calls the appropriate method based on image dimensionality.
- AlgorithmDConvolver(ModelImage, double[], int[], boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- AlgorithmDemonsLite - Class in gov.nih.mipav.model.algorithms.registration
-
Algorithm for non-linear registration with the DEMONS algorithm
- AlgorithmDemonsLite(ModelImage, ModelImage, int, int, float, float, String, String) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmDemonsLite
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmDEMRI3 - Class in gov.nih.mipav.model.algorithms
-
3 model parameters are fit for each voxel in 3D: 1) K_trans in [0, 0.99] 2) User choice of k_ep in [0, 0.99] or ve 3) f_vp in [0, 0.99] K_trans and k_ep default to rates per second, but the user changed select rates per minute.
- AlgorithmDEMRI3(ModelImage, ModelImage, double[], double[], double, boolean, double, int, double, ModelImage, double, double, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDEMRI3
-
Creates a new AlgorithmDEMRI3 object.
- AlgorithmDEMRI3.Fit24DModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmDEMRI3.Fit25HModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmDEMRI3.FitDEMRI3ConstrainedModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmDicomOrder - Class in gov.nih.mipav.model.algorithms.utilities
-
Put 3D dataset into dicom order.
- AlgorithmDicomOrder(ModelImage, int[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder
-
In place constructor.
- AlgorithmDICOMtoAVI - Class in gov.nih.mipav.model.algorithms.utilities
-
Recursively traverses a directory and its subfolders, converting all 3D DICOM files to AVI with MP42 Compression.
- AlgorithmDICOMtoAVI(String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI
-
Default Constructor.
- AlgorithmDistanceFilter - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmDistanceFilter(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
- AlgorithmDTI2EGFA - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
-
Algorithm requires input of a Diffusion Tensor Image to calculate an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image This algorithm works in conjunction with AlgorithmDTITract to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See: Introduction to Diffusion Tensor Imaging, by Susumu Mori
- AlgorithmDTI2EGFA(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA
-
Initialize the Algorithm with the input DTI Image:
- AlgorithmDTIColorDisplay - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
- AlgorithmDTIColorDisplay - Class in gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork
- AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay
-
constructor *
- AlgorithmDTIColorDisplay(ModelImage) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay
-
constructor *
- AlgorithmDTICreateListFile - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
- AlgorithmDTICreateListFile(String, String, String, String, String, JTextArea, boolean, boolean, int, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
constructor for dicom if registration is to be done first
- AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
constructor for par/rec
- AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
constructor for dicom
- AlgorithmDTICreateListFile(String, String, String, String, JTextArea, boolean, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int, JTextField) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
constructor for par/rec if registration is to be done first
- AlgorithmDTICreateListFile.InstanceNumberComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
-
This inner class is used to sort the list by instance number
- AlgorithmDTICreateListFile.InstanceNumberVolComparator - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
-
This inner class is used to sort the list by instance number and vol. the vol is determined by the filename
- AlgorithmDTITract - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
-
Algorithm requires input of previous calculated FA, EigenVector and EigenValue images from AlgorithmDTI2EGFA to calculate fiber bundle tracts This algorithm works in conjunction with AlgorithmDTI2EGFA to create the MIPAV DTI Fiber Tracking/ Statistics Dialog See:Introduction to Diffusion Tensor Imaging, by Susumu Mori
- AlgorithmDTITract(ModelImage, ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean, float, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
-
Initialize the Algorithm with the input DTI Image:
- AlgorithmDTITract(ModelImage, ModelImage, ModelImage, String, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTITract
-
Initialize the Algorithm with the input DTI Image:
- AlgorithmDualContourSearch - Class in gov.nih.mipav.model.algorithms
- AlgorithmDualContourSearch(ModelImage, int, int, int, int, double, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmDualContourSearch
- AlgorithmDWI2DTI - Class in gov.nih.mipav.model.algorithms.DiffusionTensorImaging
-
Algorithm calculates a Diffusion Tensor Image from a series of Diffusion Weighted Images.
- AlgorithmDWI2DTI(ModelImage, boolean, int, int, int, int, int, float, String[][], int[], GMatrixd, String) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
-
Create a new AlgorithmDWI2DTI
- AlgorithmDWI2DTI(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
- AlgorithmEdgeDetection3D - Class in gov.nih.mipav.model.algorithms
- AlgorithmEdgeDetection3D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
-
AlgorithmEdgeDetection3D - default constructor.
- AlgorithmEdgeDetection3D(ModelImage, ModelImage, double, double, double, int, int, int, double, double, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
-
AlgorithmEdgeDetection3D.
- AlgorithmEdgeLaplacian - Class in gov.nih.mipav.model.algorithms
-
Calculates the EdgeLap of an image at a scale defined by the user.
- AlgorithmEdgeLaplacian(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
-
Creates a new AlgorithmEdgeLaplacian object.
- AlgorithmEdgeLaplacianSep - Class in gov.nih.mipav.model.algorithms
-
Calculates the EdgeLap of an image at a scale defined by the user.
- AlgorithmEdgeLaplacianSep(ModelImage, ModelImage, float[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
-
Creates a new AlgorithmEdgeLaplacianSep object.
- AlgorithmEdgeNMSuppression - Class in gov.nih.mipav.model.algorithms
-
Calculates the non-maximum suppression of an image at a scale defined by the user.
- AlgorithmEdgeNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
-
Creates a new AlgorithmEdgeNMSuppression object.
- AlgorithmEdgePreservingSmoothing - Class in gov.nih.mipav.model.algorithms.filters
-
These are Maximum Homogeneity Neighbor Filters.
- AlgorithmEdgePreservingSmoothing(ModelImage, ModelImage, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEdgePreservingSmoothing
- AlgorithmEfficientWatershed - Class in gov.nih.mipav.model.algorithms
- AlgorithmEfficientWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
- AlgorithmEfficientWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmEfficientWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmEllipseGeneration - Class in gov.nih.mipav.model.algorithms
-
This module draws uniformly randomly positioned ellipses with a specified semi-major axis, semi-minor axis, and angle phi between the x-axis and the major axis of the ellipse.
- AlgorithmEllipseGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
-
AlgorithmEllipseGeneration - default constructor.
- AlgorithmEllipseGeneration(ModelImage, int, int, double, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseGeneration
-
AlgorithmEllipseGeneration.
- AlgorithmEllipseToCircle - Class in gov.nih.mipav.model.algorithms
-
This program performs the conformal mapping of an ellipse to a circle.
- AlgorithmEllipseToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle
-
AlgorithmEllipseToCircle - default constructor.
- AlgorithmEllipseToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToCircle
-
AlgorithmEllipseToCircle.
- AlgorithmEllipseToRectangle - Class in gov.nih.mipav.model.algorithms
-
This program performs the conformal mapping of an ellipse to a rectangle.
- AlgorithmEllipseToRectangle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle
-
AlgorithmEllipseToRectangle - default constructor.
- AlgorithmEllipseToRectangle(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipseToRectangle
-
AlgorithmEllipseToRectangle.
- AlgorithmEllipsoidFit - Class in gov.nih.mipav.model.algorithms
-
This code fits data points to a 3D ellipsoid.
- AlgorithmEllipsoidFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit
-
Creates a new AlgorithmEllipsoidFit object.
- AlgorithmEllipticFilter - Class in gov.nih.mipav.model.algorithms.filters
-
This module contains a port from FORTRAN to Java of the FORTRAN program for designing elliptic-function filters and a port from MATLAB to Java of the MATLAB program ellipap1 for designing an elliptic analog lowpass filter prototype found in "Elliptic Functions for Filter Design" by H.
- AlgorithmEllipticFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
-
The FORTRAN example in the article of n = 7, apd = 0.1dB, k = 0.8 gives in Table VI: Make FORTRAN zeros poles and FORTRAN poles zeros Poles: -0.0455944342 + j1.026557002 -0.1713670100 + j0.918389608 -0.3689660125 + j0.603979789 -0.4980421689 + j0.0 Zeros: 1.268831784 1.467798747 2.384834232 For the MATLAB example rs = 55.43dB.
- AlgorithmEllipticFilter(int, double, double, double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
- AlgorithmEllipticFilter(int, double, double, double[], double[], double[], double[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmEllipticFilter
- AlgorithmEllipticFourierDescriptors - Class in gov.nih.mipav.model.algorithms
-
Smoothing VOI with Elliptic Fourier Descriptors.
- AlgorithmEllipticFourierDescriptors() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
- AlgorithmEllipticFourierDescriptors(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
-
Creates a new AlgorithmEllipticFourierDescriptors object.
- AlgorithmELSUNCOpt2D - Class in gov.nih.mipav.model.algorithms
-
Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 2D image.
- AlgorithmELSUNCOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
- AlgorithmELSUNCOpt2D.FitOAR2DELSUNCModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmELSUNCOpt2D.FitOAR2DLMModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmELSUNCOpt3D - Class in gov.nih.mipav.model.algorithms
-
Runs ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL for a 3D image.
- AlgorithmELSUNCOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
- AlgorithmELSUNCOpt3D.FitOAR3DELSUNCModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmELSUNCOpt3D.FitOAR3DLMModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmEmbeddedConfidenceEdgeDetection - Class in gov.nih.mipav.model.algorithms
-
The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
- AlgorithmEmbeddedConfidenceEdgeDetection(ModelImage, ModelImage, int, double, double, double, double, double, double, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
- AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge - Class in gov.nih.mipav.model.algorithms
- AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect - Class in gov.nih.mipav.model.algorithms
- AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList - Class in gov.nih.mipav.model.algorithms
- AlgorithmEmbeddedConfidenceEdgeDetection.BgImage - Class in gov.nih.mipav.model.algorithms
- AlgorithmEntropicEdgeDetection - Class in gov.nih.mipav.model.algorithms
- AlgorithmEntropicEdgeDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection
-
AlgorithmEntropicEdgeDetection - default constructor.
- AlgorithmEntropicEdgeDetection(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropicEdgeDetection
-
AlgorithmEntropicEdgeDetection.
- AlgorithmEntropyMinimization - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmEntropyMinimization(ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
Creates a new AlgorithmEntropyMinimization object.
- AlgorithmEntropyMinimization(ModelImage, ModelImage, boolean, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
Creates a new AlgorithmEntropyMinimization object.
- AlgorithmEvaluateMaskSegmentation - Class in gov.nih.mipav.model.algorithms
-
Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
- AlgorithmEvaluateMaskSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateMaskSegmentation
-
Creates a new AlgorithmEvaluateMaskSegmentation object.
- AlgorithmEvaluateSegmentation - Class in gov.nih.mipav.model.algorithms
-
Compares segmentation results of a test image to segmentation results of an ideal gold standard true image.
- AlgorithmEvaluateSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEvaluateSegmentation
-
Creates a new AlgorithmEvaluateSegmentation object.
- AlgorithmExtractSlices - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm that extracts the slices indicated in the list from the srcImage and puts them into the destImage.
- AlgorithmExtractSlices(ModelImage, ModelImage, String[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices
-
Import source and destination images into the class.
- AlgorithmExtractSlicesVolumes - Class in gov.nih.mipav.model.algorithms.utilities
-
Title: AlgorithmExtractIndividualSlices
- AlgorithmExtractSlicesVolumes(ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlicesVolumes
-
Import source and destination images into the class.
- AlgorithmExtractSurface - Class in gov.nih.mipav.model.algorithms
-
Extracts a surface using Tetrahedron Extraction.
- AlgorithmExtractSurface(ModelImage, float, int, boolean, boolean, float, String, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface
-
Creates a new AlgorithmExtractSurface object.
- AlgorithmExtractSurfaceCubes - Class in gov.nih.mipav.model.algorithms
-
Extracts a surface using Marching Cube Extraction.
- AlgorithmExtractSurfaceCubes(ModelImage, int, int, boolean, boolean, float, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes
-
Creates a new AlgorithmExtractSurfaceCubes object.
- AlgorithmFaceAnonymizer - Class in gov.nih.mipav.model.algorithms
-
FaceAnonymizer algorithm computes the "face" from a ModelImage based on input parameters that specify the min/max voxel values for the face voxels, and the maximum skin thinkness.
- AlgorithmFaceAnonymizer(ModelImage, int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer
-
Create a face Anonymizer.
- AlgorithmFaceAnonymizerBET - Class in gov.nih.mipav.model.algorithms
-
Anonymize an image of a patient's head by removing the face.
- AlgorithmFaceAnonymizerBET(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET
-
Construct the face anonymizer, but do not run it yet.
- AlgorithmFaceAnonymizerBET.BitSetUtility - Class in gov.nih.mipav.model.algorithms
-
Private utility class for operations on BitSets
- AlgorithmFacetModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmFacetModel(ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- AlgorithmFacetModel(ModelImage, ModelImage, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFastMarching - Class in gov.nih.mipav.model.algorithms.levelset
-
DOCUMENT ME!
- AlgorithmFastMarching(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
-
Creates a new ViewJFrameFastMarching3 object.
- AlgorithmFastMarching(ModelImage, float[], int, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
-
AnisotropicDiffusion.
- AlgorithmFastMarching(ModelImage, int, int, float, float, float, float, float, int, float, float, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.levelset.AlgorithmFastMarching
-
Creates a new AlgorithmFastMarching3 object.
- AlgorithmFFT - Class in gov.nih.mipav.model.algorithms.filters
-
Processing images by filtering in the frequency domain is a 3 step process: 1.)
- AlgorithmFFT(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
- AlgorithmFFT(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
- AlgorithmFFT2 - Class in gov.nih.mipav.model.algorithms.filters
-
Processing images by filtering in the frequency domain is a 3 step process: 1.)
- AlgorithmFFT2(ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
- AlgorithmFFT2(ModelImage, ModelImage, int, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
- AlgorithmFIREEdgeExtraction - Class in gov.nih.mipav.model.algorithms.filters
-
References: 1.)
- AlgorithmFIREEdgeExtraction(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction
-
Constructor for images in which changes are returned to the source image.
- AlgorithmFIREEdgeExtraction(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction
-
Constructor for images in which changes are placed in a predetermined destination image.
- AlgorithmFlip - Class in gov.nih.mipav.model.algorithms.utilities
-
Flips 2D, 3D or 4D grays scale or color dataset about X, Y, or Z axis (when applicable) when AlgorithmFlip.IMAGE is passed to the constructor.
- AlgorithmFlip(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip
-
Flips 2D, 3D or 4D grays scale or color dataset about X or Y axis.
- AlgorithmFlip.ShapeHolder - Class in gov.nih.mipav.model.algorithms.utilities
-
DOCUMENT ME!
- AlgorithmFloodFill - Class in gov.nih.mipav.model.algorithms
-
Stack based flood-fill for 2D and 3D images.
- AlgorithmFloodFill(BitSet, int[], int, Point3D) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill
-
Stack based flood-fill for 2D and 3D images.
- AlgorithmFloodFill(BitSet, int[], int, Point) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFloodFill
-
Stack based flood-fill for 2D and 3D images.
- AlgorithmFRAP - Class in gov.nih.mipav.model.algorithms
-
Fluorescence Recovery after PhotoBleaching Only 1 color will be used from a color image.
- AlgorithmFRAP(ModelImage, boolean, boolean, boolean, int, int, int, int, int, boolean, int, boolean, boolean, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRAP
-
Creates a new AlgorithmFRAP object.
- AlgorithmFRAP.distanceIntensityComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmFRAP.distanceIntensityItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmFRAP.Fit24DModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitDoubleExponentialModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitDoubleExponentialNoWholeConstrainedModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitDoubleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitExpModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitExpModelqd - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitFullIntModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitFullIntModel2i - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitFullIntModel2p - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitFullIntModel2s - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitFullModel2 - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitFullModelqd - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitIntensityProfile - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitPure1DModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitPure1DNoWholeModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitSineModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitSingleExponentialModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitSingleExponentialNoWholeModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNL2solInt2 - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNL2solModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNLConInt2 - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNLConModel - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNLConModel2 - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNLConModel3 - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.FitWholeNLConModelqd - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmFRAP.IntModel - Class in gov.nih.mipav.model.algorithms
-
class IntModel extends Integration { public IntModel(double lower, double upper, int routine, double eps) { super(lower, upper, routine, eps); } public double intFunc(double x) { double function = 0.0; if ((x !
- AlgorithmFRAP.IntModel2 - Class in gov.nih.mipav.model.algorithms
-
class IntModel2 extends Integration2 { public IntModel2(double lower, double upper, int routine, double breakPoints[], double epsabs, double epsrel, int limit) { super(lower, upper, routine, breakPoints, epsabs, epsrel, limit); } public double intFunc(double x) { double function = 0.0; if ((x !
- AlgorithmFRAP.IntModelBessel - Class in gov.nih.mipav.model.algorithms
- AlgorithmFRAP.IntModelI0NuclearArea - Class in gov.nih.mipav.model.algorithms
- AlgorithmFrequencyFilter - Class in gov.nih.mipav.model.algorithms.filters
-
AlgorithmFrequencyFilter.java.
- AlgorithmFrequencyFilter(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
Constructor used in Laplacian medialness option of live wire cost function.
- AlgorithmFrequencyFilter(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
Creates a new AlgorithmFrequencyFilter object.
- AlgorithmFrequencyFilter(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
This constructor is only used for HOMOMORPHIC filters.
- AlgorithmFrequencyFilter(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
Constructor used for Gabor transform.
- AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
Creates a new AlgorithmFrequencyFilter object.
- AlgorithmFrequencyFilter(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
This constructor is only used for HOMOMORPHIC filters.
- AlgorithmFrequencyFilter(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
Constructor used for Gabor transform.
- AlgorithmFrequencyFilterColor - Class in gov.nih.mipav.model.algorithms.filters
-
AlgorithmFrequencyFilterColor.java.
- AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
Constructor used in Laplacian medialness option of live wire cost function.
- AlgorithmFrequencyFilterColor(ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
Creates a new AlgorithmFrequencyFilter object.
- AlgorithmFrequencyFilterColor(ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
This constructor is only used for HOMOMORPHIC filters.
- AlgorithmFrequencyFilterColor(ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
Constructor used for Gabor transform.
- AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, boolean, int, int, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
Creates a new AlgorithmFrequencyFilter object.
- AlgorithmFrequencyFilterColor(ModelImage, ModelImage, boolean, float, int, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
This constructor is only used for HOMOMORPHIC filters.
- AlgorithmFrequencyFilterColor(ModelImage, ModelImage, float, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
Constructor used for Gabor transform.
- AlgorithmFRETAcceptorPhotobleach - Class in gov.nih.mipav.model.algorithms
-
Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
- AlgorithmFRETAcceptorPhotobleach(ModelImage, ModelImage, boolean, boolean, boolean, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach
-
Creates a new AlgorithmFRETAcceptorPhotobleach object.
- AlgorithmFRETBleedThrough - Class in gov.nih.mipav.model.algorithms
-
Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
- AlgorithmFRETBleedThrough(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETBleedThrough
-
Creates a new AlgorithmFRETBleedThrough object.
- AlgorithmFRETEfficiency - Class in gov.nih.mipav.model.algorithms
-
Fluorescence Resonance Energy Transfer FRET refers to the nonradiative transfer of energy from an excited state donor fluorescent molecule to a nearby acceptor fluorescent molecule.
- AlgorithmFRETEfficiency(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, float, float, float, float, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFRETEfficiency
-
Creates a new AlgorithmFRETEfficiency object.
- AlgorithmFuzzMinDeAndChatterji - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
- AlgorithmFuzzMinDeAndChatterji(ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji
-
Constructor for images in which changes are returned to the source image.
- AlgorithmFuzzMinDeAndChatterji(ModelImage, ModelImage, double, boolean, double, double, double, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji
-
Constructor for images in which changes are placed in a predetermined destination image.
- AlgorithmFuzzyCMeans - Class in gov.nih.mipav.model.algorithms
-
Fuzzy C-Means Segmentation algorithm
- AlgorithmFuzzyCMeans(ModelImage[], ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
-
Creates a new AlgorithmFuzzyCMeans object.
- AlgorithmFuzzyCMeans(ModelImage, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
-
Creates a new AlgorithmFuzzyCMeans object.
- AlgorithmFuzzyConnectednessSegmentation - Class in gov.nih.mipav.model.algorithms
- AlgorithmFuzzyConnectednessSegmentation(ModelImage[], ModelImage, int, int, double, double, Vector<Integer>, Vector<Short>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
- AlgorithmFuzzyMinimization - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm performs minimization of fuzziness, a reduction of the amount of fuzziness.
- AlgorithmFuzzyMinimization(ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization
-
Constructor for images in which changes are returned to the source image.
- AlgorithmFuzzyMinimization(ModelImage, ModelImage, int, double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization
-
Constructor for images in which changes are placed in a predetermined destination image.
- AlgorithmGaussianBlur - Class in gov.nih.mipav.model.algorithms.filters
-
The application of this algorithm blurs an image or VOI region of the image with a Gaussian function at a user defined scale (sigma - standard deviation).
- AlgorithmGaussianBlur(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Creates a new AlgorithmGaussianBlur object.
- AlgorithmGaussianBlur(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Constructor which sets the source and destination images, the minimum and maximum progress value.
- AlgorithmGaussianBlurSep - Class in gov.nih.mipav.model.algorithms.filters
-
Calculates the gaussian blur of an image at a scale defined by the user (using separable convolutions).
- AlgorithmGaussianBlurSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
-
Creates a new AlgorithmGaussianBlurSep object.
- AlgorithmGaussianMixtureModelEM - Class in gov.nih.mipav.model.algorithms
-
Copyright (c) 1995 The Board of Trustees of Purdue University.
- AlgorithmGaussianMixtureModelEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
- AlgorithmGaussianMixtureModelEM(int, int, String, String, String, String, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
- AlgorithmGaussianMixtureModelEM(String, String, String, String, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
- AlgorithmGaussianMixtureModelEM.ClassData - Class in gov.nih.mipav.model.algorithms
- AlgorithmGaussianMixtureModelEM.ClassSig - Class in gov.nih.mipav.model.algorithms
- AlgorithmGaussianMixtureModelEM.SigSet - Class in gov.nih.mipav.model.algorithms
- AlgorithmGaussianMixtureModelEM.SubSig - Class in gov.nih.mipav.model.algorithms
- AlgorithmGenerateIsolines - Class in gov.nih.mipav.model.algorithms
- AlgorithmGenerateIsolines(ModelImage, ModelImage, double, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- AlgorithmGradientInverseWeightedSmoothing - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmGradientInverseWeightedSmoothing(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
- AlgorithmGradientInverseWeightedSmoothing(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientInverseWeightedSmoothing
- AlgorithmGradientMagnitude - Class in gov.nih.mipav.model.algorithms.filters
-
Calculates the gradient magnitude of an image at a scale defined by the user.
- AlgorithmGradientMagnitude(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Creates a new AlgorithmGradientMagnitude object.
- AlgorithmGradientMagnitude(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Creates a new AlgorithmGradientMagnitude object.
- AlgorithmGradientMagnitudeSep - Class in gov.nih.mipav.model.algorithms.filters
-
Calculates the gradient magnitude of an image at a scale defined by the user (using separable convolutions).
- AlgorithmGradientMagnitudeSep(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
-
Creates a new AlgorithmGradientMagnitudeSep object.
- AlgorithmGraphBasedSegmentation - Class in gov.nih.mipav.model.algorithms
- AlgorithmGraphBasedSegmentation(ModelImage, ModelImage, float, float, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation
-
Constructs graph based segmentation algorithm.
- AlgorithmGraphBasedSegmentation.edge - Class in gov.nih.mipav.model.algorithms
- AlgorithmGraphBasedSegmentation.edgeComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmGraphBasedSegmentation.uni_elt - Class in gov.nih.mipav.model.algorithms
- AlgorithmGraphBasedSegmentation.universe - Class in gov.nih.mipav.model.algorithms
- AlgorithmGrayScaleMorphology25D - Class in gov.nih.mipav.model.algorithms
-
2.5D mathematical morphology class applied to Gray scale images. (2D morphology on 3D volumes).
- AlgorithmGrayScaleMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
-
Creates a new AlgorithmMorphology25D object.
- AlgorithmGrayScaleMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
-
Creates a new AlgorithmGrayScaleMorphology25D object.
- AlgorithmGrayScaleMorphology2D - Class in gov.nih.mipav.model.algorithms
-
Two-Dimensional mathematical morphology class applied to Gray scale images.
- AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
-
Creates a new AlgorithmGrayScaleMorphology2D object.
- AlgorithmGrayScaleMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
-
Creates a new AlgorithmMorphology2D object.
- AlgorithmGrayScaleMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
-
Creates a new AlgorithmGrayScaleMorphology2D object.
- AlgorithmGrayScaleMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms
-
Simple class to temporarily store the object's size, ID and seed index value.
- AlgorithmGrayScaleMorphology3D - Class in gov.nih.mipav.model.algorithms
-
Three-Dimensional mathematical morphology class applied to Gray scale images.
- AlgorithmGrayScaleMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
-
Creates a new AlgorithmMorphology3D object.
- AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
-
Creates a new AlgorithmMorphology3D object.
- AlgorithmGrayScaleMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
-
Creates a new AlgorithmGrayScaleMorphology3D object.
- algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- algorithmGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
- AlgorithmGuidedFilter - Class in gov.nih.mipav.model.algorithms.filters
-
The MIT License (MIT) Copyright (c) 2014 Atilim Cetin Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
- AlgorithmGuidedFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- AlgorithmGuidedFilter(ModelImage, ModelImage, ModelImage, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- AlgorithmGVF - Class in gov.nih.mipav.model.algorithms
-
Snake-like algorithm derivative using BSplines.
- AlgorithmGVF(ModelImage, ModelImage, float[], int, int, float, VOI, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Creates a new AlgorithmGVF object.
- AlgorithmHaralickTexture - Class in gov.nih.mipav.model.algorithms.filters
-
DOCUMENT ME!
- AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture
-
Creates a new AlgorithmHaralickTexture object for black and white image.
- AlgorithmHaralickTexture(ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture
-
Creates a new AlgorithmHaralickTexture object for color image.
- AlgorithmHarrisCornerDetector - Class in gov.nih.mipav.model.algorithms
- AlgorithmHarrisCornerDetector() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
-
AlgorithmHarrisCornerDetector - default constructor.
- AlgorithmHarrisCornerDetector(ModelImage, ModelImage, float, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
-
AlgorithmHarrisCornerDetector.
- AlgorithmHarrisLaplace - Class in gov.nih.mipav.model.algorithms
- AlgorithmHarrisLaplace() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
-
AlgorithmHarrisLaplace - default constructor.
- AlgorithmHarrisLaplace(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
-
AlgorithmHarrisLaplace.
- AlgorithmHeightFunction - Class in gov.nih.mipav.model.algorithms
-
The class generates a triangle or quad mesh of a 2D dataset (image) to be displayed in the surface viewer.
- AlgorithmHeightFunction(ModelImage, int, String, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction
-
Sets up variables needed by algorithm to run.
- AlgorithmHepticLagrangian - Class in gov.nih.mipav.model.algorithms
-
This is a polynomial p of degree 7 which interpolates a given function f at the points x(-3), x(-2), x(-1), x(0), x(1), x(2), x(3), and x(4) and is given by p(x) = sum from i = -3 to i = 4 of li(x)*f(xi), where li, i = -3,-2,-1,0,1,2,3,4 which are called the fundamental polynomials, are given by li(x) = product from k = -3 to k = 4 for k !
- AlgorithmHepticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian
-
AlgorithmHepticLagrangian - default constructor.
- AlgorithmHessian - Class in gov.nih.mipav.model.algorithms
-
Provides functions to convolve an image with the second derivitive of the Gaussian function to obtain the Hessian matrix for a particular point on the image.
- AlgorithmHessian(ModelImage, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHessian
-
Creates a new AlgorithmHessian object.
- AlgorithmHilbertTransform - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmHilbertTransform(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHilbertTransform
- AlgorithmHillClimbingWatershed - Class in gov.nih.mipav.model.algorithms
- AlgorithmHillClimbingWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
- AlgorithmHillClimbingWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmHillClimbingWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmHistogram - Class in gov.nih.mipav.model.algorithms
-
Calculates the histogram for an image.
- AlgorithmHistogram(ModelHistogram, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an RGB image.
- AlgorithmHistogram(ModelHistogram, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object.
- AlgorithmHistogram(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an image.
- AlgorithmHistogram(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an image.
- AlgorithmHistogram(ModelImage, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an image.
- AlgorithmHistogram(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an RGB image.
- AlgorithmHistogram(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an RGB image.
- AlgorithmHistogram(ModelImage, int, int, boolean, boolean, boolean, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an RGB image.
- AlgorithmHistogram(ModelImage, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an image.
- AlgorithmHistogram(ModelImage, int, int, int, boolean, boolean, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram
-
Constructs the histogram calculation object for an RGB image.
- AlgorithmHistogram.GrayLevelClass - Class in gov.nih.mipav.model.algorithms
-
Used specifally by the Otsu threshold algorithm to define a gray level object for calculating probabilities.
- AlgorithmHistogram2Dim - Class in gov.nih.mipav.model.algorithms
-
This algorithm creates a two dimensional histogram of the data in 2 black and white images or 1 color image. if doLinearRescale is true, the range of data in the second image is rescaled to be the same as the range of data in the first image.
- AlgorithmHistogram2Dim(ModelImage, ModelImage, boolean, boolean, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
Constructor for images in which 2D histogram is placed in a predetermined destination image.
- AlgorithmHistogram2Dim(ModelImage, ModelImage, ModelImage, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
Constructor for images in which 2D histogram is placed in a predetermined destination image.
- AlgorithmHistogramMatch - Class in gov.nih.mipav.model.algorithms
-
Algorithm that matches the transforms a match or source image so as to make its histogram equal to the histogram of a base image.
- AlgorithmHistogramMatch(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
Constructor for 3D images in which changes are returned to the source image.
- AlgorithmHistogramMatch(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmHistogramSliceMatch - Class in gov.nih.mipav.model.algorithms
-
Algorithm that matches or transforms a match or source slice so as to make its histogram equal to the histogram of a base slice.
- AlgorithmHistogramSliceMatch(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
-
Constructor for 3D images in which changes are returned to the source image.
- AlgorithmHistogramSliceMatch(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmHMRF_EM - Class in gov.nih.mipav.model.algorithms
-
This is a port of the MATLAB files HMRF_EM.m and MRF_MAP.m written by Quan Wang to Java
- AlgorithmHMRF_EM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
-
AlgorithmHMRF_EM - default constructor.
- AlgorithmHMRF_EM(ModelImage, ModelImage, int, int, float, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHMRF_EM
-
AlgorithmHMRF_EM.
- AlgorithmHoughCardioid - Class in gov.nih.mipav.model.algorithms
-
This Hough transform uses (xi, yi) points in the original image space to generate theta0, a0 points in the Hough transform.
- AlgorithmHoughCardioid() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
-
AlgorithmHoughCardioid - default constructor.
- AlgorithmHoughCardioid(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCardioid
-
AlgorithmHoughCardioid.
- AlgorithmHoughCircle - Class in gov.nih.mipav.model.algorithms
-
This Hough transform uses (xi, yi) points in the original image space to generate x0, y0, rad points in the Hough transform.
- AlgorithmHoughCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle
-
AlgorithmHoughCircle - default constructor.
- AlgorithmHoughCircle(ModelImage, ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughCircle
-
AlgorithmHoughCircle.
- AlgorithmHoughEllipse - Class in gov.nih.mipav.model.algorithms
-
This Hough transform uses (xi, yi) points in the original image space to generate p, q, r1, r2, and theta points in the Hough transform.
- AlgorithmHoughEllipse() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
-
AlgorithmHoughEllipse - default constructor.
- AlgorithmHoughEllipse(ModelImage, ModelImage, double, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughEllipse
-
AlgorithmHoughEllipse.
- AlgorithmHoughHyperbola - Class in gov.nih.mipav.model.algorithms
-
This work is made possible by the following mathematical theorem proved by Professor Alan Horwitz of Penn State University: Finding the Center of a Hyperbola, H, given three nonparallel tangent lines to H and the corresponding points of tangency.
- AlgorithmHoughHyperbola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
-
AlgorithmHoughHyperbola - default constructor.
- AlgorithmHoughHyperbola(ModelImage, ModelImage, int, int, double, double, double, double, int, int, double, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughHyperbola
-
AlgorithmHoughHyperbola.
- AlgorithmHoughLine - Class in gov.nih.mipav.model.algorithms
-
This Hough transform uses (xi, yi) points in the original image space to generate rho, theta points in the Hough transform.
- AlgorithmHoughLine() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine
-
AlgorithmHoughLine - default constructor.
- AlgorithmHoughLine(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughLine
-
AlgorithmHoughLine.
- AlgorithmHoughParabola - Class in gov.nih.mipav.model.algorithms
-
[(y - vy)*cos(phi) - (x - vx)*sin(phi)]**2 = 4*p*[(y - vy)*sin(phi) + (x - vx)*cos(phi)] where vx, vy are the coordinates of the parabola vertex p is the distance between the vertex and focus of the parabola This Hough transform uses (xi, yi) points in the original image space to generate vx, vy, phi, p points in the Hough transform.
- AlgorithmHoughParabola() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
-
AlgorithmHoughParabola - default constructor.
- AlgorithmHoughParabola(ModelImage, ModelImage, int, int, int, double, int, float, float, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmHoughParabola
-
AlgorithmHoughParabola.
- AlgorithmHurstIndex - Class in gov.nih.mipav.model.algorithms.filters
-
DOCUMENT ME!
- AlgorithmHurstIndex(ModelImage, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
-
Creates a new AlgorithmHurstIndex object for black and white image.
- AlgorithmHurstIndex(ModelImage, int, double, double, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
-
Creates a new AlgorithmHurstIndex object for color image.
- AlgorithmHurstIndex(ModelImage, ModelImage, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
-
Creates a new AlgorithmHurstIndex object for black and white image.
- AlgorithmHurstIndex(ModelImage, ModelImage, int, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
-
Creates a new AlgorithmHurstIndex object for color image.
- AlgorithmHurstIndex.DistanceIntensity - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmHurstIndex.DistanceIntensityComparator - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmIAGCWD - Class in gov.nih.mipav.model.algorithms
- AlgorithmIAGCWD() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
- AlgorithmIAGCWD(ModelImage, ModelImage, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
- AlgorithmIHN3Correction - Class in gov.nih.mipav.model.algorithms
-
N3 Inhomogeneity correction This is based on code by John G.
- AlgorithmIHN3Correction(ModelImage, ModelImage, ModelImage, float, int, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
Creates a new AlgorithmIHN3Correction object.
- AlgorithmImageCalculator - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm that adds, subtracts, multiplies, or divides an image by by another image.
- AlgorithmImageCalculator(ModelImage, ModelImage[], int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
constructor used for bulk images
- AlgorithmImageCalculator(ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
Creates a new AlgorithmImageCalculator object using srcImgA
srcImgB. - AlgorithmImageCalculator(ModelImage, ModelImage, ModelImage, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
Creates a new AlgorithmImageCalculator object.
- AlgorithmImageHessian - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmImageHessian(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian
-
Creates a new AlgorithmImageHessian object.
- AlgorithmImageHessian(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian
-
Creates a new AlgorithmImageHessian object.
- AlgorithmImageHessian(ModelImage, ModelImage, int, float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmImageHessian
-
Creates a new AlgorithmImageHessian object.
- AlgorithmImageMath - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm that adds, subtracts, multiplies, or divides an image by some user specified value.
- AlgorithmImageMath(ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
Creates a new AlgorithmImageMath object.
- AlgorithmImageMath(ModelImage, ModelImage, int, double, double, double, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
Creates a new AlgorithmImageMath object.
- AlgorithmImageMath.Operator - Enum in gov.nih.mipav.model.algorithms.utilities
- AlgorithmIndependentComponents - Class in gov.nih.mipav.model.algorithms
-
This algorithm operates on 2D and 3D black and white and color images.
- AlgorithmIndependentComponents(ModelImage[], ModelImage[], int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
-
Creates a new AlgorithmIndependentComponents object.
- AlgorithmIndependentComponents(ModelImage[], ModelImage, int, int, int, double, double, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
-
Creates a new AlgorithmIndependentComponents object.
- AlgorithmInsertSlice - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm to insert a slice.
- AlgorithmInsertSlice(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice
-
Import source and destination images into the class.
- AlgorithmInsertVolume - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmInsertVolume(ModelImage, ModelImage, int, int, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
-
Import source and destination images into the class.
- AlgorithmInterface - Interface in gov.nih.mipav.model.algorithms
-
The interface used by all classes which want to respond to the conclusion of an algorithm.
- AlgorithmIsophoteCurvature - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmIsophoteCurvature(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
- AlgorithmIsophoteCurvature(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
- AlgorithmIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmIteratedBlindDeconvolution(ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution
-
Creates a new AlgorithmIteratedBlindDeconvolution object.
- AlgorithmKernelRegression - Class in gov.nih.mipav.model.algorithms.filters
-
This is a port of MATLAB routines contained in kernelRegressionBasedImageProcessingToolBox_ver1-2beta written by Hiroyuki Takeda, Sina Farsiu, and Peyman Milanfar.
- AlgorithmKernelRegression(ModelImage, ModelImage, int, boolean, boolean, boolean, double, boolean, double, boolean, double, float, float, float, int, int, int, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
-
Creates a new AlgorithmKernelRegression object.
- AlgorithmKMeans - Class in gov.nih.mipav.model.algorithms
-
This program can be run on data of any dimensionality.
- AlgorithmKMeans(ModelImage, int, int, double[][], double[], int[], double[], double[][], String, int, float[], float[], float[], double, boolean, boolean, double[], boolean, double[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- AlgorithmKMeans.positionWeightComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmKMeans.positionWeightItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmLaplacian - Class in gov.nih.mipav.model.algorithms.filters
-
Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
- AlgorithmLaplacian(ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
Constructs a Laplacian algorithm object.
- AlgorithmLaplacian(ModelImage, float[], boolean[], boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
Constructs a Laplacian algorithm object.
- AlgorithmLaplacian(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
Constructs a Laplacian algorithm object.
- AlgorithmLaplacian(ModelImage, ModelImage, boolean, int, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
Constructs a Laplacian algorithm object.
- AlgorithmLapMedianess - Class in gov.nih.mipav.model.algorithms
-
Calculates the Laplacian of the gaussian of an image at a scale defined by the user.
- AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Constructs a Laplacian algorithm object.
- AlgorithmLapMedianess(ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Constructs a Laplacian algorithm object.
- AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Constructs a Laplacian algorithm object.
- AlgorithmLapMedianess(ModelImage, ModelImage, float[], boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Constructs a Laplacian algorithm object.
- AlgorithmLawsTexture - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmLawsTexture(ModelImage[], ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
- AlgorithmLearnFromFailure64 - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
- AlgorithmLearnFromFailure64(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
- AlgorithmLearnFromFailure64.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
- AlgorithmLearnFromFailure64Knees - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, BufferedWriter, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
- AlgorithmLearnFromFailure64Knees(ModelImage, int, int, float, float, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
- AlgorithmLearnFromFailure64Knees.ClassType - Enum in gov.nih.mipav.model.algorithms.filters
- AlgorithmLevelSet - Class in gov.nih.mipav.model.algorithms
-
This algorithm iteratively expands or contracts one or more contours to a boundary.
- AlgorithmLevelSet(ModelImage, float[], int, int, float, float, float, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
-
LevelSet.
- AlgorithmLevelSetDiffusion - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmLevelSetDiffusion(ModelImage, float[], int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
-
AnisotropicDiffusion.
- AlgorithmLLE - Class in gov.nih.mipav.model.algorithms
- AlgorithmLLE(ModelImage, ModelImage, int, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLLE
-
Creates a new AlgorithmLLE object.
- AlgorithmLLE.distanceIndexComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmLLE.distanceIndexItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmLoadB() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLoadImage.AlgorithmLoadB
- AlgorithmLocalNormalization - Class in gov.nih.mipav.model.algorithms.filters
-
Local Normalisation equalises colour levels among pixels by removing variations due to lighting; this brings out contrasts in detail.
- AlgorithmLocalNormalization(ModelImage, ModelImage, float[], double, int, float) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization
-
This constructor initialises a Local normalisation algorithm for a source and destination image, and ensures that the destination image is
ModelStorageBase.FLOAT. - AlgorithmLocalVariance - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmLocalVariance(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmLogSlopeMapping - Class in gov.nih.mipav.model.algorithms
- AlgorithmLogSlopeMapping(ModelImage, ModelImage[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLogSlopeMapping
- AlgorithmLowerCompletion - Class in gov.nih.mipav.model.algorithms
- AlgorithmLowerCompletion(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
- AlgorithmLuminanceAdaptation - Class in gov.nih.mipav.model.algorithms
- AlgorithmLuminanceAdaptation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
- AlgorithmLuminanceAdaptation(ModelImage, ModelImage, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
- AlgorithmMarkovSegment - Class in gov.nih.mipav.model.algorithms
- AlgorithmMarkovSegment(ModelImage, ModelImage, int, double, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMarkovSegment
- AlgorithmMarkovSmooth - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmMarkovSmooth(ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
- AlgorithmMarkovSmooth(ModelImage, ModelImage, double, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMarkovSmooth
- AlgorithmMask - Class in gov.nih.mipav.model.algorithms.utilities
-
Allow the user to fill a VOI or fill everything outside the VOI with a specific fill value.
- AlgorithmMask(ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMask(ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMask(ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMask(ModelImage, ModelImage, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMask(ModelImage, ModelImage, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMask(ModelImage, ModelImage, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMask(ModelImage, Color, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Creates a new AlgorithmMask object.
- AlgorithmMatchForReference - Class in gov.nih.mipav.model.algorithms
-
Will take Two 2D images (one Reference, one Adjusted) and use the Reference image's Resolutions to transform the adjusted Image into a new size and resolution that the Reference Image can then be matched to, while preserving all Field of Views (there is no loss of FOV).
- AlgorithmMatchForReference(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMatchForReference
-
Constructor.. takes in a reference and adjusted modelImage
- AlgorithmMatchImages - Class in gov.nih.mipav.model.algorithms.utilities
-
Matches two ModelImages.
- AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages
-
Create an AlgorithmMatchImages to match the two input images.
- AlgorithmMatchImages(ModelImage, ModelImage, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages
-
Create an AlgorithmMatchImages to match the two input images.
- AlgorithmMaximumIntensityProjection - Class in gov.nih.mipav.model.algorithms.utilities
-
Computes the maximum or the minimum intensity along each projection of a 3D image.
- AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
-
Estimates the maximum intensity projection in each direction of a 3D black and white image
- AlgorithmMaximumIntensityProjection(ModelImage, int, int, int, double, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
-
Estimates the maximum intensity projection of a 3D color image
- AlgorithmMaximumLikelihoodIteratedBlindDeconvolution - Class in gov.nih.mipav.model.algorithms
-
An implementation of Maximum Likelihood Iterated Blind Deconvolution based on the following papers:
- AlgorithmMaximumLikelihoodIteratedBlindDeconvolution(ModelImage, int, int, float, float, float, boolean, int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution
-
Creates a new AlgorithmMaximumLikelihoodIteratedBlindDeconvolution object.
- AlgorithmMean - Class in gov.nih.mipav.model.algorithms.filters
-
Algorithm to apply a mean filter to an image, placing it in a new ModelImage if New image is selected or returning the changed picture to the same image if Replace image is selected.
- AlgorithmMean(ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
Constructor for 2D images in which changes are returned to the source image.
- AlgorithmMean(ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
Constructor for 3D images in which changes are returned to the source image.
- AlgorithmMean(ModelImage, ModelImage, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
Constructor for 2D images in which changes are placed in a predetermined destination image.
- AlgorithmMean(ModelImage, ModelImage, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmMeanShiftClustering - Class in gov.nih.mipav.model.algorithms
-
The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
- AlgorithmMeanShiftClustering(ModelImage, int, int, int, String, String, int, int, double, boolean, float, boolean, float, int, int, boolean, int, int, float[], ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
-
File formats: Files are all ASCII files.
- AlgorithmMeanShiftClustering.fams_cut - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftClustering.fams_hash_entry - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftClustering.fams_hash_entry2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftClustering.fams_res_cont - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftClustering.famsPoint - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation - Class in gov.nih.mipav.model.algorithms
-
The java code is ported from C++ code downloaded from http://coewww.rutgers.edu/riul/research/code.html.
- AlgorithmMeanShiftSegmentation(ModelImage, ModelImage, AlgorithmMeanShiftSegmentation.kernelType, AlgorithmMeanShiftSegmentation.kernelType, float, float, int, AlgorithmMeanShiftSegmentation.SpeedUpLevel, boolean, double, double[], boolean, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
- AlgorithmMeanShiftSegmentation.ClassStateStruct - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation.kernelType - Enum in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation.RAList - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation.REGION - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation.RegionList - Class in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation.SpeedUpLevel - Enum in gov.nih.mipav.model.algorithms
- AlgorithmMeanShiftSegmentation.userWeightFunct - Class in gov.nih.mipav.model.algorithms
- AlgorithmMedian - Class in gov.nih.mipav.model.algorithms.filters
-
Algorithm to apply a median filter to an image, placing it in a new ModelImage, or returning the changed picture to the same image.
- AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Constructor for 2D images in which changes are returned to the source image.
- AlgorithmMedian(ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Constructor for 3D images in which changes are returned to the source image.
- AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Constructor for 2D images in which changes are placed in a predetermined destination image.
- AlgorithmMedian(ModelImage, ModelImage, int, int, int, float, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmMidsagittal - Class in gov.nih.mipav.model.algorithms
-
Finds the midsagittal line of a brain MRI by: Flipping the image horizontally. Registering the flipped image against the original. Getting the angle that the registration rotated the image. Transforming the original image by half the registration rotation.
- AlgorithmMidsagittal(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
-
Construct the midsagittal algorithm.
- AlgorithmMinimumPerimeterPolygon - Class in gov.nih.mipav.model.algorithms
-
Smoothing VOI with minimum perimeter polygon.
- AlgorithmMinimumPerimeterPolygon() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
- AlgorithmMinimumPerimeterPolygon(ModelImage, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
-
Creates a new AlgorithmMinimumPerimeterPolygon object.
- AlgorithmMixGaussEM - Class in gov.nih.mipav.model.algorithms
- AlgorithmMixGaussEM() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMixGaussEM
- AlgorithmMixGaussEM.model - Class in gov.nih.mipav.model.algorithms
- AlgorithmMode - Class in gov.nih.mipav.model.algorithms.filters
-
AlgorithmMode applies one of the user specified kernels to a 2D or 3D BYTE, SHORT, INTEGER, UBYTE, USHORT, UINTEGER.
- AlgorithmMode(ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Constructor for 2D images in which changes are returned to the source image.
- AlgorithmMode(ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Constructor for 3D images in which changes are returned to the source image.
- AlgorithmMode(ModelImage, ModelImage, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Constructor for 2D images in which changes are placed in a predetermined destination image.
- AlgorithmMode(ModelImage, ModelImage, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Constructor for 3D images in which changes are placed in a predetermined destination image.
- AlgorithmMorphologicalFilter - Class in gov.nih.mipav.model.algorithms.filters
-
Performs morphological filtering on black and white images.
- AlgorithmMorphologicalFilter(ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter
-
Constructs a Morphological filter object.
- AlgorithmMorphologicalFilter(ModelImage, ModelImage, int[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter
-
Constructs a Morphological filter object.
- AlgorithmMorphology25D - Class in gov.nih.mipav.model.algorithms
-
2.5D mathmatical morphology class (2D morphology on 3D volumes).
- AlgorithmMorphology25D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
-
Creates a new AlgorithmMorphology25D object.
- AlgorithmMorphology25D(ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
-
Creates a new AlgorithmMorphology25D object.
- AlgorithmMorphology2D - Class in gov.nih.mipav.model.algorithms
-
Two-Dimensional mathmatical morphology class.
- AlgorithmMorphology2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
- AlgorithmMorphology2D(ModelImage, int, float, int, float, int, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
Creates a new AlgorithmMorphology2D object.
- AlgorithmMorphology2D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
Creates a new AlgorithmMorphology2D object.
- AlgorithmMorphology2D(ModelImage, ModelImage, int, float, int, int, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
Creates a new AlgorithmMorphology2D object.
- AlgorithmMorphology2D.intObject - Class in gov.nih.mipav.model.algorithms
-
Simple class to temporarily store the object's size, ID and seed index value.
- AlgorithmMorphology3D - Class in gov.nih.mipav.model.algorithms
-
Three-Dimensional mathmatical morphology class.
- AlgorithmMorphology3D(ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
Creates a new AlgorithmMorphology3D object.
- AlgorithmMorphology3D(ModelImage, ModelImage, int, float, int, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
Creates a new AlgorithmMorphology3D object.
- AlgorithmMorphology3D(ModelImage, ModelImage, ModelImage, int, float, int, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
Creates a new AlgorithmMorphology3D object.
- AlgorithmMorphology3D.intObject - Class in gov.nih.mipav.model.algorithms
-
Simple class to temporarily store the object's size, ID and seed index value.
- AlgorithmMosaicToSlices - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm requires input of 2D or 3D mosaics.
- AlgorithmMosaicToSlices(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices
-
Creates a new AlgorithmMosaicToSlices object.
- AlgorithmMRIShadingCorrection - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmMRIShadingCorrection(ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection
-
Creates a new AlgorithmMRIShadingCorrection object.
- AlgorithmMRIShadingCorrection(ModelImage, ModelImage, float, float, float, int, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection
-
Creates a new AlgorithmMRIShadingCorrection object.
- AlgorithmMSER - Class in gov.nih.mipav.model.algorithms
- AlgorithmMSER(ModelImage, double, double, double, double, double, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSER
- AlgorithmMSER.VlMserExtrReg - Class in gov.nih.mipav.model.algorithms
-
Extremal regions (ER) are extracted from the region forest.
- AlgorithmMSER.VlMserFilt - Class in gov.nih.mipav.model.algorithms
- AlgorithmMSER.VlMserReg - Class in gov.nih.mipav.model.algorithms
-
Extremal regions and maximally stable extremal regions are instances of image regions.
- AlgorithmMSER.VlMserStats - Class in gov.nih.mipav.model.algorithms
- AlgorithmMSpectralFuzzyCMeans - Class in gov.nih.mipav.model.algorithms
-
Fuzzy C-Means Segmentation algorithm
- AlgorithmMSpectralFuzzyCMeans(ModelImage[], ModelImage[], int, int, int, int, float, float, float, boolean, int, boolean, int, float, boolean, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans
-
AlgorithmMSpectralFuzzyCMeans - Constructor.
- AlgorithmMultiExponentialFitting - Class in gov.nih.mipav.model.algorithms
- AlgorithmMultiExponentialFitting() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
- AlgorithmMultiExponentialFitting(int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int, double[], int, double[], double[], int[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
- AlgorithmN4MRIBiasFieldCorrectionFilter - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmN4MRIBiasFieldCorrectionFilter(ModelImage, ModelImage, ModelImage, int, double, double, double, int, int, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
-
Constructor which sets the source and destination images
- AlgorithmNearlyCircleToCircle - Class in gov.nih.mipav.model.algorithms
-
This program performs the conformal mapping of a nearly circular region to a circle.
- AlgorithmNearlyCircleToCircle() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle
-
AlgorithmNearlyCircleToCircle - default constructor.
- AlgorithmNearlyCircleToCircle(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNearlyCircleToCircle
-
AlgorithmNearlyCircleToCircle.
- AlgorithmNetworkSnake - Class in gov.nih.mipav.model.algorithms
-
Copyright (c) 2011, The University of Nottingham All rights reserved.
- AlgorithmNetworkSnake(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake
- AlgorithmNetworkSnake.AnchorPosition - Enum in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.ContractingSnake - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.ContractingSnakeNode - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.ExtentionMath - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.IMetadataProvider - Interface in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.Metadata - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.NetworkSnake - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.Pixel - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.PixelGrid - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.PixelGrid.PixelGridNode - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.SnakeInitialiser - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.SnakeInitialiser.KeyValuePair - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.SnakeInitialiser.Node - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.SnakeNode - Class in gov.nih.mipav.model.algorithms
- AlgorithmNetworkSnake.tuple2i - Class in gov.nih.mipav.model.algorithms
- AlgorithmNLNoiseReduction - Class in gov.nih.mipav.model.algorithms.filters
-
This is a port of the SUSAN Nonlinear Noise reduction program.
- AlgorithmNLNoiseReduction(ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
AlgorithmNLNoiseReduction - Constructor.
- AlgorithmNLNoiseReduction(ModelImage, ModelImage, double, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
AlgorithmNLNoiseReduction - Constructor.
- AlgorithmNMSuppression - Class in gov.nih.mipav.model.algorithms.filters
-
Calculates the non-maximum suppression of an image at a scale defined by the user Edges are defined as the union of points for which the gradient magnitude assumes a maximum in the gradient direction.
- AlgorithmNMSuppression(ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
-
AlgorithmNMSuppression - Constructor.
- AlgorithmNMSuppression(ModelImage, ModelImage, float[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
-
AlgorithmNMSuppression - Constructor.
- AlgorithmNoise - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm used to add Gaussian, Poisson, Uniform, Rayleigh, or Rician noise to an image.
- AlgorithmNoise(ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
-
Creates a new AlgorithmNoise object.
- AlgorithmNoise(ModelImage, ModelImage, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
-
Creates a new AlgorithmNoise object.
- AlgorithmNonlocalMeansFilter - Class in gov.nih.mipav.model.algorithms.filters
-
This is a port of the 09/03/2006 NLmeansfilter.m and UNLmeansfilter2.m on 02/15/2008 by Jose Vicente Manjon Herrera invalid input: '&' Antoni Buades.
- AlgorithmNonlocalMeansFilter(ModelImage, ModelImage, int, int, boolean, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmNonlocalMeansFilter
-
Creates a new AlgorithmNonlocalMeans object.
- AlgorithmNonMaxSuppts - Class in gov.nih.mipav.model.algorithms
- AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
- AlgorithmNonMaxSuppts(ModelImage, ModelImage, VOIVector, int, double, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts
- AlgorithmNonparametricSegmentation - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmNonparametricSegmentation(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation
-
Creates a new AlgorithmNonparametricSegmentation object.
- AlgorithmNonparametricSegmentation(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmNonparametricSegmentation
-
Creates a new AlgorithmNonparametricSegmentation object.
- AlgorithmObjectExtractor - Class in gov.nih.mipav.model.algorithms
-
A class for segmenting objects.
- AlgorithmObjectExtractor(ModelImage, VOI, boolean, boolean, TriMesh, float[], float[], float[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
-
Create an extractor for segmenting an object from an image.
- AlgorithmObjectExtractor.Edge - Class in gov.nih.mipav.model.algorithms
-
A representation of an edge for the vertex-edge-triangle table.
- AlgorithmObjectExtractor.UnorderedSetInt - Class in gov.nih.mipav.model.algorithms
-
An unordered set of 'int' stored in an array.
- AlgorithmOptimizeFunctionBase - Interface in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmParameters - Class in gov.nih.mipav.view.dialogs
-
This class standardizes the parameter names given to many common parameters used in algorithms.
- AlgorithmParameters() - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters
-
Creates a new AlgorithmParameters object to be used to record the current parameters entered into the algorithm's GUI by the user.
- AlgorithmParameters(ParameterTable) - Constructor for class gov.nih.mipav.view.dialogs.AlgorithmParameters
-
Creates a new AlgorithmParameters object to be used to set up the algorithm's GUI from stored parameters.
- AlgorithmPbBoundaryDetection - Class in gov.nih.mipav.model.algorithms
-
Compute probability of boundary using brightness gradient and texture gradient Original MATLAB code written by David R.
- AlgorithmPbBoundaryDetection() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
AlgorithmPbBoundaryDetection - default constructor.
- AlgorithmPbBoundaryDetection(ModelImage, ModelImage, int, int, double, double, int, String, double, int, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
AlgorithmPbBoundaryDetection.
- algorithmPerformed() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisCornerDetector
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmHarrisLaplace
- algorithmPerformed(AlgorithmBase) - Method in interface gov.nih.mipav.model.algorithms.AlgorithmInterface
-
Called after an algorithm this listener is registered to exits (maybe successfully, maybe not).
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation
-
alg performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLearnFromFailure64Knees
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.MotionDetection
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAGVF
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHE
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation
-
Respond to the completion or failure of the algorithm we called.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSmooth
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBSnake
-
algorithmPerformed this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogClose
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion
-
DOCUMENT ME!
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcat
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogConvexHull2D
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing
-
This method is required if the AlgorithmInterface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCrop
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram
-
method that is called after algorithm is finished.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI
-
Method for catching end of algorithm events.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDilate
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample
-
Algorithm notifies dialog of status.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogErode
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFFT
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects
-
When the morphology algorithm finish running, this method is invoked.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFlip
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogGVF
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHessian
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramLUT
-
Deprecated.This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogInvert
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLargestCircle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSet
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLevelSetDiffusion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLLE
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage
-
DOCUMENT ME!
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMask
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution
-
Called when the AlgorithmMaximumLikelihoodIteratedBlindDeconvolution has finished processing the source image.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMean
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMode
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSER
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoise
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogOpen
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion
-
DOCUMENT ME!
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRegVOILandmark
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice
-
DOCUMENT ME!
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue
-
If the destination image is not null, put in frame.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogReslice
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRotate
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSM2
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSnake
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
Method for catching end of algorithm events.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubset
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSWI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat
-
algorithmPerformed - this method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation
-
alg performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
the standard thread-done event for
AlgorithmBase. - algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic
-
algorithmPerformed - when the alignment algorithm finishes, the transformed tile is blended with the reference image and displayed:
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
algorithm performed
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput
-
Called when AlgorithmDWI2DTI is done creating the DTI image.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogTrainingListGenerator
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogLoadProstateMask
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterCentralGland
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterMICCAI
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTestCentralGland
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DVolumetricHEDMiccaiProstate12
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
empty function to implement the algorithm interface.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
-
This method is required if the AlgorithmPerformed interface is implemented.
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
- algorithmPerformed(AlgorithmBase) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogShuffleList
-
This method is required if the AlgorithmPerformed interface is implemented.
- AlgorithmPhaseCongruency - Class in gov.nih.mipav.model.algorithms
-
Ported from Peter Kovesi's MATLAB code for Phase Congruency Available from: http://www.csse.uwa.edu.au/~pk/research/matlabfns/PhaseCongruency/phasecong3.m and: http://www.csse.uwa.edu.au/~pk/research/matlabfns/FrequencyFilt/lowpassfilter.m in reference to the method lowpassFilter(); % References: % % Peter Kovesi, "Image Features From Phase Congruency".
- AlgorithmPhaseCongruency(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPhaseCongruency
- AlgorithmPointArea - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmPointArea(ModelImage, int, int, int, int, boolean, boolean, boolean, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPointArea
-
Creates a new AlgorithmPointArea object.
- AlgorithmPointSetToImageFilter - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmPointSetToImageFilter(int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmPointSetToImageFilter
- AlgorithmPowellOpt2D - Class in gov.nih.mipav.model.algorithms
-
Runs Powell's method for a 2D image.
- AlgorithmPowellOpt2D(AlgorithmBase, Vector2f, int, AlgorithmOptimizeFunctionBase, double[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt2D
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
- AlgorithmPowellOpt3D - Class in gov.nih.mipav.model.algorithms
-
Runs Powell's method for a 3D image.
- AlgorithmPowellOpt3D(AlgorithmBase, Vector3f, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOpt3D
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, some tolerance within that point to look for the minimum, and the maximum number of iterations.
- AlgorithmPowellOptBase - Class in gov.nih.mipav.model.algorithms
-
Powell's Method
- AlgorithmPowellOptBase(AlgorithmBase, int, AlgorithmOptimizeFunctionBase, double[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowellOptBase
-
Constructs a new algorithm with the given centers of mass (needed for setting the transformations), the given cost function (which was constructed with the proper images), the initial point we're looking at, and some tolerance within that point to look for the minimum.
- AlgorithmPowerWatershed - Class in gov.nih.mipav.model.algorithms
-
This is a port of C code written by Camille Couprie in 2009.
- AlgorithmPowerWatershed(ModelImage, ModelImage, int, Vector<Integer>, Vector<Short>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
-
Constructs Power watershed algorithm.
- AlgorithmPowerWatershed.Lifo - Class in gov.nih.mipav.model.algorithms
- AlgorithmPowerWatershed.Rbt - Class in gov.nih.mipav.model.algorithms
- AlgorithmPowerWatershed.RbtElt - Class in gov.nih.mipav.model.algorithms
- AlgorithmPrincipalComponents - Class in gov.nih.mipav.model.algorithms
-
This algorithm operates on 3D black and white images and on 2D and 3D color images.
- AlgorithmPrincipalComponents(ModelImage[], ModelImage, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents
-
Creates a new AlgorithmPrincipalComponents object.
- AlgorithmPrincipalComponents(ModelImage[], ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents
-
Creates a new AlgorithmPrincipalComponents object.
- AlgorithmPrincipalComponents(ModelImage[], ModelImage, ModelImage, boolean, boolean, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmPrincipalComponents
-
Creates a new AlgorithmPrincipalComponents object.
- AlgorithmProstateBoundaryExt - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm traces the prostate boundary from the target image, non prostate binary mask image and prostate boundary binary mask image.
- AlgorithmProstateBoundaryExt(ModelImage, ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
-
Constructor
- AlgorithmProstateBoundaryExt.Edge - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmProstateBoundaryExt.PointAttribute - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmProstateBoundaryFeature2D - Class in gov.nih.mipav.model.algorithms.filters
-
DOCUMENT ME!
- AlgorithmProstateBoundaryFeature2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
-
Creates a new AlgorithmHaralickTexture object for black and white image.
- AlgorithmProstateFeatures - Class in gov.nih.mipav.model.algorithms.filters
-
DOCUMENT ME!
- AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
Creates a new AlgorithmHaralickTexture object for black and white image.
- AlgorithmProstateFeatures(ModelImage[], ModelImage[], ModelImage, int, int, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, float, float, float, boolean, int, boolean, boolean, int, int, int, int, float, float, float, boolean, int, boolean, float, int, float, boolean, float[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
Creates a new AlgorithmHaralickTexture object for color image.
- AlgorithmProstateFeatures2D - Class in gov.nih.mipav.model.algorithms.filters
-
DOCUMENT ME!
- AlgorithmProstateFeatures2D(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
-
Creates a new AlgorithmHaralickTexture object for black and white image.
- AlgorithmProstateFeaturesSaveAutoTrain - Class in gov.nih.mipav.model.algorithms.filters
-
This class save the Coherence Enhanced Diffusion (CED) 2D slice based features, which are Hurst index and Haralick features.
- AlgorithmProstateFeaturesSaveAutoTrain(ModelImage, ModelImage, ModelImage, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Constructor.
- AlgorithmQuadraticFit - Class in gov.nih.mipav.model.algorithms
-
Approximate a set of points by a quadric surface.
- AlgorithmQuadraticFit(Vector<Vector3f>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuadraticFit
-
Fit a set of 3D points with a quadric surface.
- AlgorithmQuantify - Class in gov.nih.mipav.model.algorithms
-
Quantify image data based on a mask image.
- AlgorithmQuantify(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuantify
-
Creates a new AlgorithmQuantify object.
- AlgorithmQuantifyMask - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm that does basic calculations on Mask images (boolean/ubyte/short) calculates Center of Mass, area (in resolutions), and number of pixels per mask
- AlgorithmQuantifyMask(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
-
Creates a new AlgorithmMask object.
- AlgorithmQuinticLagrangian - Class in gov.nih.mipav.model.algorithms
-
This is a polynomial p of degree 5 which interpolates a given function f at the points x(-2), x(-1), x(0), x(1), x(2), and x(3) and is given by p(x) = sum from i = -2 to i = 3 of li(x)*f(xi), where li, i = -2,-1,0,1,2,3 which are called the fundamental polynomials, are given by li(x) = product from k = -2 to k = 3 for k !
- AlgorithmQuinticLagrangian() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian
-
AlgorithmQuinticLagrangian - default constructor.
- AlgorithmRandSliceOrder - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm that randomizes the order of 3D dataset.
- AlgorithmRandSliceOrder(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder
-
Constructs an algorithm object that randomizes the order of 3D image dataset.
- AlgorithmRandSliceOrder(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder
-
Constructs an algorithm object that randomizes the order of 3D image dataset.
- AlgorithmRegBSpline - Class in gov.nih.mipav.model.algorithms.registration
-
This is a common base class which provides common methods and data members for all BSpline based registration.
- AlgorithmRegBSpline(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline
-
Constructor.
- AlgorithmRegBSpline.Options - Class in gov.nih.mipav.model.algorithms.registration
-
Data structure which contains the parameters or options used to perform a BSpline based registration of two images.
- AlgorithmRegBSpline25D - Class in gov.nih.mipav.model.algorithms.registration
-
BSpline based registration of 2.5D images.
- AlgorithmRegBSpline25D(ModelImage, ModelImage, int, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline25D
-
Constructor.
- AlgorithmRegBSpline2D - Class in gov.nih.mipav.model.algorithms.registration
-
BSpline based registration of 2D images.
- AlgorithmRegBSpline2D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline2D
-
Constructor.
- AlgorithmRegBSpline3D - Class in gov.nih.mipav.model.algorithms.registration
-
BSpline registration of 3D images.
- AlgorithmRegBSpline3D(ModelImage, ModelImage, ModelImage, ModelImage, RegistrationMeasure, AlgorithmRegBSpline.Options, AlgorithmRegBSpline.Options) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline3D
-
Constructor.
- AlgorithmRegChamfer - Class in gov.nih.mipav.model.algorithms.registration
-
AlgorithmRegChamfer First slice is template (base image) to which match image is registered.
- AlgorithmRegChamfer(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
-
Constructs a new registration algorithm.
- AlgorithmRegChamfer(ModelImage, ModelImage, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
-
Constructs new registration algorithm.
- AlgorithmRegChamfer.CostFunction - Class in gov.nih.mipav.model.algorithms.registration
-
Class for specifying optimization function for AlgorithmSimplexOpt.
- AlgorithmRegELSUNCOAR25D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegELSUNCOAR25D(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR25D(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR35D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegELSUNCOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration
-
Helper class to make it easy to store the necessary information about a minimum.
- AlgorithmRegELSUNCOAR3D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegELSUNCOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegionGrow - Class in gov.nih.mipav.model.algorithms
-
Fills a region based on average intensity +or- standard deviation.
- AlgorithmRegionGrow(ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow
-
Creates a new AlgorithmRegionGrow object.
- AlgorithmRegionGrow(ModelImage, ModelImage, float, float) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow
-
Creates a new AlgorithmRegionGrow object.
- AlgorithmRegionMergingViaBoundaryMelting - Class in gov.nih.mipav.model.algorithms
- AlgorithmRegionMergingViaBoundaryMelting(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionMergingViaBoundaryMelting
-
Creates a new AlgorithmRegionMergingViaBoundaryMelting object.
- AlgorithmRegionMergingViaBoundaryMelting.mergeItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmRegionsFromPartialBorders - Class in gov.nih.mipav.model.algorithms
- AlgorithmRegionsFromPartialBorders(ModelImage, ModelImage, double, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmRegionsFromPartialBorders
-
Creates a new AlgorithmRegionsFromPartialBorders object.
- AlgorithmRegLeastSquares - Class in gov.nih.mipav.model.algorithms.registration
-
"Least-Squares Fitting of 2 3-D Point Sets", K.
- AlgorithmRegLeastSquares(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares
-
AlgorithmRegLeastSquares - Constructor.
- AlgorithmRegLeastSquares(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares
-
AlgorithmRegLeastSquares - Constructor.
- AlgorithmRegOAR25D2 - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegOAR25D2(ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegOAR25D2(ModelImage, ModelImage, int, int, int, int, boolean, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR2D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR35D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegOAR35D(ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegOAR35D(ModelImage, ModelImage, int, int, int, int, int, int, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
Creates new automatic internal registration algorithm and sets necessary variables.
- AlgorithmRegOAR35D.MatrixListItem - Class in gov.nih.mipav.model.algorithms.registration
-
Helper class to make it easy to store the necessary information about a minimum.
- AlgorithmRegOAR3D - Class in gov.nih.mipav.model.algorithms.registration
-
This is an automatic registration method based on FLIRT.
- AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR3D(ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegOAR3D(ModelImage, ModelImage, ModelImage, ModelImage, int, int, int, float, float, float, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Creates new automatic linear registration algorithm and sets necessary variables.
- AlgorithmRegPatientPos - Class in gov.nih.mipav.model.algorithms.registration
-
Use origin and image orientations to align images based on patient position.
- AlgorithmRegPatientPos(ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos
-
Creates new algorithm.
- AlgorithmRegularizedIsotropicDiffusion - Class in gov.nih.mipav.model.algorithms.filters
-
Algorithm to apply Regularized Isotropic Nonlinear Diffusion as described by:
- AlgorithmRegularizedIsotropicDiffusion(ModelImage, ModelImage, int, float, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion
-
Creates a new AlgorithmRegularizedIsotropicDiffusion object.
- AlgorithmRegValidation - Class in gov.nih.mipav.model.algorithms.registration
-
Uses a selected
RegistrationMeasureand the user-specified points to output the relevant measure back to the user. - AlgorithmRegValidation(double[][], double[][], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation
-
AlgorithmRegValidation - Constructor.
- AlgorithmRegValidation(Vector3f[], Vector3f[], int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation
-
AlgorithmRegValidation - Constructor.
- AlgorithmRegVOILandmark - Class in gov.nih.mipav.model.algorithms.registration
-
AlgorithmRegVOILandmark First slice is template (base image) to which subsequent slices are registered.
- AlgorithmRegVOILandmark(ModelImage, ModelImage, float[], boolean, VOIBase, double, double, double, double, double, double, double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark
-
Constructor.
- AlgorithmRegVOILandmark.CostFunction - Class in gov.nih.mipav.model.algorithms.registration
-
CostFunction - class for specifying optimization function for AlgorithmSimplexOpt slice - current fluoroscopy slice being operated on.
- AlgorithmRemoveSlices - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm verifies the z-th slice should be in included in the destination image, as defined in the list, remove.
- AlgorithmRemoveSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices
-
Import source and destination images into the class.
- AlgorithmRemoveTSlices - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm to run the remove T slices.
- AlgorithmRemoveTSlices(ModelImage, ModelImage, boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveTSlices
-
import source and destination images into the class.
- AlgorithmReplaceBlankSlicesWithAverages - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmReplaceBlankSlicesWithAverages(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceBlankSlicesWithAverages
-
Creates a new AlgorithmReplaceSlice object.
- AlgorithmReplaceRemovedSlices - Class in gov.nih.mipav.model.algorithms.utilities
-
This algorithm is used to insert averaged slices where slices have been removed -If slices were removed at the beginning of the original movie, these slices will not be replaced. - Slices are only inserted between the first and last kept slices
- AlgorithmReplaceRemovedSlices(ModelImage, boolean[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceRemovedSlices
-
Constructor for algorithm.
- AlgorithmReplaceSlice - Class in gov.nih.mipav.model.algorithms.utilities
-
DOCUMENT ME!
- AlgorithmReplaceSlice(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceSlice
-
Creates a new AlgorithmReplaceSlice object.
- AlgorithmReplaceValue - Class in gov.nih.mipav.model.algorithms.utilities
-
Title: AlgorithmReplaceValue
- AlgorithmReplaceValue(ModelImage, ModelImage, Vector<JDialogReplaceValue.Values>, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue
-
Default contructor.
- AlgorithmReslice - Class in gov.nih.mipav.model.algorithms.utilities
-
Reslices 3D image into (isotropic)cubic voxels.
- AlgorithmReslice(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice
-
Creates new algorithm for reslicing to isotropic voxels.
- AlgorithmRGBConcat - Class in gov.nih.mipav.model.algorithms.utilities
-
Simple algorithm that generates an RGB image from three gray images.
- AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
-
Creates a new AlgorithmRGBConcat object.
- AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, int, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
-
Creates a new AlgorithmRGBConcat object.
- AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
-
Creates a new AlgorithmRGBConcat object.
- AlgorithmRGBConcat(ModelImage, ModelImage, ModelImage, ModelImage, boolean, boolean, float, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
-
Creates a new AlgorithmRGBConcat object.
- AlgorithmRGBtoGray - Class in gov.nih.mipav.model.algorithms.utilities
-
Simple algorithm that converts an RGB image to a single greyscale image.
- AlgorithmRGBtoGray(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Creates a new AlgorithmRGBtoGray object.
- AlgorithmRGBtoGray(ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Creates a new AlgorithmRGBtoGray object.
- AlgorithmRGBtoGray(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Creates a new AlgorithmRGBtoGray object.
- AlgorithmRGBtoGray(ModelImage, ModelImage, float, float, float, boolean, float, boolean, boolean, float, float, float, float, float, float) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Creates a new AlgorithmRGBtoGray object.
- AlgorithmRGBtoGrays - Class in gov.nih.mipav.model.algorithms.utilities
-
Simple algorithm that converts an RGB image to a red, green, and blue greyscale images.
- AlgorithmRGBtoGrays(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays
-
Creates a new AlgorithmRGBtoGrays object.
- AlgorithmRGBtoHSB - Class in gov.nih.mipav.model.algorithms.utilities
-
Simple algorithm that converts an RGB image to a hue, saturation and brightness greyscale images.
- AlgorithmRGBtoHSB(ModelImage, ModelImage, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB
-
Creates a new AlgorithmRGBtoHSB object.
- AlgorithmRiceWaveletTools - Class in gov.nih.mipav.model.algorithms.filters
-
This "rice-wlet-tools", version 2.4 Released - invalid input: '<'Dec 1 2002> CONDITIONS FOR USE: Copyright (c) 2000 RICE UNIVERSITY.
- AlgorithmRiceWaveletTools() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- AlgorithmRiceWaveletTools(ModelImage, double[]) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- AlgorithmRiceWaveletTools(ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- AlgorithmRiceWaveletTools(ModelImage, ModelImage, int, boolean, int, boolean, int, int, int, boolean, double, int, double, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- AlgorithmRiceWaveletTools.EigenvalueComplex - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmRiceWaveletTools.EigenvalueComplexComparator - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmRotate - Class in gov.nih.mipav.model.algorithms.utilities
-
An Algorithm to rotate 3D or 4D dataset 90 or 180 degrees about X, Y, or Z axis. 2D Images can also be rotated.
- AlgorithmRotate(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
-
Creates new algorithm for rotating.
- AlgorithmRotate(ModelImage, int[], boolean[]) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
-
Creates new algorithm for rotating.
- AlgorithmRotate(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
-
Creates new algorithm for rotating.
- AlgorithmRuleBasedContrastEnhancement - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm uses an equation with 3 membership functions, udark, ugray, and ubright, to transform a gray level g to a new gray level g' for histogram enhancement.
- AlgorithmRuleBasedContrastEnhancement(ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement
-
Constructor for images in which changes are returned to the source image.
- AlgorithmRuleBasedContrastEnhancement(ModelImage, ModelImage, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement
-
Constructor for images in which changes are placed in a predetermined destination image.
- AlgorithmScaleSaliency - Class in gov.nih.mipav.model.algorithms
-
Original source code in C and MATLAB is Copyright 1998-2004 by Timor Kadir Version 1.5 Kadir/Brady Feature detector (Scale Saliency) Code For non-commercial use only Ported by to Java by William Gandler References: 1.)
- AlgorithmScaleSaliency() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
-
AlgorithmScaleSaliency - default constructor.
- AlgorithmScaleSaliency(ModelImage, int, int, int, int, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- AlgorithmScaleSaliency.sixItems - Class in gov.nih.mipav.model.algorithms
- AlgorithmScaleSaliency.sixItemsComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmSCDSegmentation - Class in gov.nih.mipav.model.algorithms
- AlgorithmSCDSegmentation(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSCDSegmentation
- AlgorithmSeparableConvolver - Class in gov.nih.mipav.model.algorithms
-
Convolves an image with a separable (symmetric) kernel and returns the result.
- AlgorithmSeparableConvolver(float[], int[], float[][], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
-
Sets destination, source, and kernel buffers.
- AlgorithmSeparableConvolver(float[], int[], float[], int[], boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
- AlgorithmSequentialScanningWatershed - Class in gov.nih.mipav.model.algorithms
- AlgorithmSequentialScanningWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
- AlgorithmSequentialScanningWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmSequentialScanningWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmSFTA - Class in gov.nih.mipav.model.algorithms
- AlgorithmSFTA(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSFTA
- AlgorithmShortestPathWatershed - Class in gov.nih.mipav.model.algorithms
- AlgorithmShortestPathWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
- AlgorithmShortestPathWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmShortestPathWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmSimulatedExposureFusion - Class in gov.nih.mipav.model.algorithms
- AlgorithmSimulatedExposureFusion() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- AlgorithmSimulatedExposureFusion(ModelImage, ModelImage, double, double, int, int, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- AlgorithmSingleMRIImageSNR - Class in gov.nih.mipav.model.algorithms
-
This program uses a mandatory signal 1 VOI, an optional signal 2 VOI, a mandatory noise background VOI, and the number of NMR receivers to calculate the signal to noise ratio for the signal VOI(s).
- AlgorithmSingleMRIImageSNR(ModelImage, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
-
Creates a new AlgorithmSingleMRIImageSNR object.
- AlgorithmSkullRemoval - Class in gov.nih.mipav.model.algorithms
-
Algorithm Implementation 1.
- AlgorithmSkullRemoval(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
-
Automatic DeSkulling initialization.
- AlgorithmSkullRemoval(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
-
Automatic DeSkulling initialization.
- AlgorithmSliceAveraging - Class in gov.nih.mipav.model.algorithms.filters
-
This algorithm averages together slices of a 3D image.
- AlgorithmSliceAveraging(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging
-
Creates a new AlgorithmSliceAveraging object.
- AlgorithmSliceAveraging(ModelImage, ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging
-
Creates a new AlgorithmSliceAveraging object.
- AlgorithmSM2 - Class in gov.nih.mipav.model.algorithms
-
Based on the document provided by Daniel Reich: Notes on DCE with SM2 (standard model, aka Tofts model, 2-compartment) 3 model parameters are fit for each voxel in 3D: 1) K_trans in [1.0E-5, 5.0] in /min On input ktrans is converted from /min to /sec and on output ktrans is converted from /sec to /min. 2) ve in [1.0E-5, 0.99] 3) f_vp in [0, 0.99] srcImage is a dynamic "4D volume" of MRI signal (3D over time).
- AlgorithmSM2(ModelImage[], ModelImage, double[], double[], double[], ModelImage, double[], double, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSM2
-
Creates a new AlgorithmDEMRI3 object.
- AlgorithmSM2.FitAll - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.FitAllEP - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.FitAllNL2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.FitSM2ConstrainedModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.FitSM2ConstrainedModelC - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.FitSM2nl2solModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.Integration2All - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.Integration2EPAll - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.IntModel - Class in gov.nih.mipav.model.algorithms
- AlgorithmSM2.sm2Task - Class in gov.nih.mipav.model.algorithms
- AlgorithmSnake - Class in gov.nih.mipav.model.algorithms
-
Snake-like algorithm deriviative.
- AlgorithmSnake(ModelImage, float[], int, float, VOI, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSnake
-
Set up the snake algorithm so that it can be run.
- AlgorithmSobel - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmSobel(ModelImage, ModelImage, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSobel
- AlgorithmSpectralClustering - Class in gov.nih.mipav.model.algorithms
- AlgorithmSpectralClustering(ModelImage, double[][], double[], int[], double[][], String, float[], float[], float[], double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
- AlgorithmSphereGeneration - Class in gov.nih.mipav.model.algorithms
-
This module draws uniformly randomly positioned spheres with a specified radius.
- AlgorithmSphereGeneration() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
-
AlgorithmSphereGeneration - default constructor.
- AlgorithmSphereGeneration(ModelImage, int, int, int, int, int, int, double, double, double, double, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
-
AlgorithmRandomSphereGeneration.
- AlgorithmSphereGeneration.IntModelMean - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntModelMean2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntModelMeanSquared - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntModelMeanSquared2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntTorquato95ModelMean - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntTorquato95ModelMean2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntTorquatoModelMean - Class in gov.nih.mipav.model.algorithms
- AlgorithmSphereGeneration.IntTorquatoModelMean2 - Class in gov.nih.mipav.model.algorithms
- AlgorithmSplitAndMergeWatershed - Class in gov.nih.mipav.model.algorithms
- AlgorithmSplitAndMergeWatershed(ModelImage, ModelImage, int, boolean, int, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
- AlgorithmSplitAndMergeWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmSplitAndMergeWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmStandardDeviationThreshold - Class in gov.nih.mipav.model.algorithms
-
The Standard Deviation Threshold works by first having an active VOI in which the standard deviation and other statistics are calculated.
- AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold
-
constructor for grey scale image
- AlgorithmStandardDeviationThreshold(ModelImage, float, float, float, float, float, float, float, float, float, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold
-
constructor for color image
- AlgorithmSubsample - Class in gov.nih.mipav.model.algorithms.utilities
-
Takes in an image and subsamples it to a new set of dimensions.
- AlgorithmSubsample(ModelImage, ModelImage, int[], int[], float[], boolean, boolean, TransMatrix, boolean) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubsample
-
Setup for a later subsampling of an image.
- AlgorithmSubset - Class in gov.nih.mipav.model.algorithms.utilities
-
Algorithm to create a 3D subset image from a 4D image.
- AlgorithmSubset(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSubset
-
import source and destination images into the class.
- AlgorithmSubtractVOI - Class in gov.nih.mipav.model.algorithms
-
Algorithm that subtracts the mean or median value of a VOI from the image.
- AlgorithmSubtractVOI(ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
Creates a new AlgorithmSubtractVOI object.
- AlgorithmSubtractVOI(ModelImage, ModelImage, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
Creates a new AlgorithmSubtractVOI object.
- AlgorithmSwap34 - Class in gov.nih.mipav.model.algorithms.utilities
-
Swaps third and fourth dimensions in 4D dataset.
- AlgorithmSwap34(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwap34
-
Constructs new algorithm and sets source.
- AlgorithmSwapDims - Class in gov.nih.mipav.model.algorithms.utilities
-
Swaps dimensions in 4D dataset.
- AlgorithmSwapDims(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapDims
-
Constructs new algorithm and sets source.
- AlgorithmSwapSlicesVolume - Class in gov.nih.mipav.model.algorithms.utilities
-
Title: AlgorithmSwapSlicesVolume
- AlgorithmSwapSlicesVolume(ModelImage, JDialogSwapSlicesVolumes.SwapMode, int[][], ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume
-
Import source and destination images into the class.
- AlgorithmSWI - Class in gov.nih.mipav.model.algorithms.filters
-
This class recalculates mo and dceFullTre to provide better estimates using the inverse Ernst equation
- AlgorithmSWI(boolean, ModelImage, ModelImage, ModelImage, double, int, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
-
Constructor.
- AlgorithmSymmetricNearestNeighbor - Class in gov.nih.mipav.model.algorithms.filters
- AlgorithmSymmetricNearestNeighbor(ModelImage, ModelImage, boolean, int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmSymmetricNearestNeighbor
- AlgorithmTalairachTransform - Class in gov.nih.mipav.model.algorithms
-
Performs original to ACPC, original to Talairach, ACPC to original, ACPC to Talairach, Talairach to original, or Talairach to ACPC transformation.
- AlgorithmTalairachTransform(ModelImage, ModelImage, TalairachTransformInfo, int, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
Creates a new AlgorithmTalairachTransform object.
- AlgorithmTamuraTexture - Class in gov.nih.mipav.model.algorithms.filters
-
DOCUMENT ME!
- AlgorithmTamuraTexture(ModelImage[], ModelImage, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
-
Creates a new AlgorithmTamuraTexture object for black and white image.
- AlgorithmTamuraTexture(ModelImage[], ModelImage, int, boolean, double, boolean, int, boolean, int, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
-
Creates a new AlgorithmTamuraTexture object for color image.
- AlgorithmTextureAnalysis - Class in gov.nih.mipav.model.algorithms
-
Overview This code contains the texture analysis functions for the paper `Texture Analysis and Segmentation Using Modulation Features, Generative Models, and Weighted Curve Evolution', by I.
- AlgorithmTextureAnalysis(ModelImage[], ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureAnalysis
- AlgorithmTextureSegmentation - Class in gov.nih.mipav.model.algorithms
-
This software implements the factorization-based segmentation algorithm.
- AlgorithmTextureSegmentation(ModelImage, ModelImage, int, int, Vector3f[], BitSet, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
- AlgorithmThinning2D - Class in gov.nih.mipav.model.algorithms
- AlgorithmThinning2D() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D
-
AlgorithmThinning2D - default constructor.
- AlgorithmThinning2D(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThinning2D
- AlgorithmThresholdDual - Class in gov.nih.mipav.model.algorithms
-
This algorithm has two modes of operation:
- AlgorithmThresholdDual(ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
Creates a new AlgorithmThresholdDual object.
- AlgorithmThresholdDual(ModelImage, ModelImage, float[], float, int, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
Creates a new AlgorithmThresholdDual object.
- AlgorithmThresholdDualRGB - Class in gov.nih.mipav.model.algorithms
-
Runs threshold (lower and upper) on color images and replaces values either outside (inverse) or inside (normal) with the fill values specified.
- AlgorithmThresholdDualRGB(ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB
-
Default constructor for running algorithm on and modifying source image.
- AlgorithmThresholdDualRGB(ModelImage, ModelImage, float[], float[], float[], float[], boolean[], boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB
-
Default constructor for running algorithm into a destination image.
- AlgorithmTiltCorrection - Class in gov.nih.mipav.model.algorithms.utilities
- AlgorithmTiltCorrection(ModelImage, ModelImage, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.utilities.AlgorithmTiltCorrection
- AlgorithmTimeFitting - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
-
Creates a new AlgorithmTimeFitting object.
- AlgorithmTimeFitting(ModelImage, ModelImage, ModelImage, boolean, int, int, boolean, double[], boolean[], double[], double[], boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
-
Creates a new AlgorithmTimeFitting object.
- AlgorithmTimeFitting.FitExponential - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.FitGaussian - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.FitLaplace - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.FitLine - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.FitLorentz - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.FitMultiExponential - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.FitRayleigh - Class in gov.nih.mipav.model.algorithms
- AlgorithmTimeFitting.fittingTask - Class in gov.nih.mipav.model.algorithms
- AlgorithmTProcess - Class in gov.nih.mipav.model.algorithms
-
This abstract class defines terms common to both T1 and T2 processing, such as thresholding and multithreading management methods.
- AlgorithmTProcess() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
- AlgorithmTProcess(ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess
- AlgorithmTProcess.CalculateT - Class in gov.nih.mipav.model.algorithms
- AlgorithmTPSpline - Class in gov.nih.mipav.model.algorithms
-
Thin plate spline Warning: If the supplied (x,y) data set in setupTPSpline2D is nearly collinear, singular matrices will result and a matrix inversion will fail.
- AlgorithmTPSpline() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
AlgorithmTPSpline - default constructor.
- AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
AlgorithmTPSpline - constructor for 3D case.
- AlgorithmTPSpline(double[], double[], double[], double[], double[], double[], float, ModelImage, ModelImage, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
AlgorithmTPSpline - constructor for 3D case.
- AlgorithmTPSpline(double[], double[], double[], double[], float, ModelImage, ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
AlgorithmTPSpline - constructor for 2D case.
- AlgorithmTPSpline(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
Constructor used when N, xDimA, yDimA, zDimA, x[], y[], z[], and C[][] are read from a file
- AlgorithmTranscode - Class in gov.nih.mipav.model.algorithms
-
Title:
- AlgorithmTranscode(URL, String, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTranscode
-
Creates a new AlgorithmTranscode object.
- AlgorithmTransform - Class in gov.nih.mipav.model.algorithms
-
Transforms Volume by resampling using transformation matrix and the choice of nearest-neighbor, trilinear interpolation, 3rd order Bspline, 4th order Bspline, cubic Lagrangian, quintic Lagrangian, heptic Lagrangian, or windowed sinc.
- AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
3D constructor for transformation algorithm.
- AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Creates a new $class.name$ object.
- AlgorithmTransform(ModelImage, TransMatrix, int, float, float, float, int, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Creates a new $class.name$ object.
- AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
2D constructor for transformation algorithm.
- AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Creates a new AlgorithmTransform object.
- AlgorithmTransform(ModelImage, TransMatrix, int, float, float, int, int, int[], boolean, boolean, boolean, boolean, Vector3f) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Creates a new AlgorithmTransform object.
- AlgorithmTransformBSpline - Class in gov.nih.mipav.model.algorithms
-
TransformBSpline algorithm This algorithm takes a source image and uses information read in from a .nlt file to perform a nonlinear B-Spline transformation on the image.
- AlgorithmTransformBSpline(ModelImage, float[], int[], int, int, float[][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline
-
AlgorithmTransformBSpline - Constructor.
- AlgorithmTransformBSpline(ModelImage, float[], int, int, float[][][]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline
-
AlgorithmTransformBSpline - Constructor.
- AlgorithmTransformVOI - Class in gov.nih.mipav.model.algorithms
- AlgorithmTransformVOI(ModelImage, TransMatrix) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
- AlgorithmTreParams - Interface in gov.nih.mipav.view.dialogs
-
This interface contains convenience enumerations for going between the dialog and algorithm of the TRE framework.
- AlgorithmTreParams.FieldStrength - Enum in gov.nih.mipav.view.dialogs
-
Specifies the magnetic field strength of the scanner used.
- AlgorithmTreParams.InversionType - Enum in gov.nih.mipav.view.dialogs
-
Specifies the inversion method used for the scan.
- AlgorithmTreParams.ScannerType - Enum in gov.nih.mipav.view.dialogs
-
Designates the brand of scanner used for processing.
- AlgorithmTreParams.Threshold - Enum in gov.nih.mipav.view.dialogs
-
A three way boolean operator to designate the thresholding option used.
- AlgorithmTreT1 - Class in gov.nih.mipav.model.algorithms
-
This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
- AlgorithmTreT1(double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- AlgorithmTreT1(ModelImage, ModelImage, double, double, double, double, double, double, double[], double[], double[], double[], double[], double, double, double, double[], double[], int[], int[], int[], int, double, int, int, double, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, float, float, String[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- AlgorithmTreT1.CalculateT1 - Class in gov.nih.mipav.model.algorithms
- AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner - Class in gov.nih.mipav.model.algorithms
- AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner - Class in gov.nih.mipav.model.algorithms
- AlgorithmTreT2 - Class in gov.nih.mipav.model.algorithms
-
This class is adapted from the ImageJ version originally written by Sean Deoni while working at the National Institutes of Health.
- AlgorithmTreT2(ModelImage, ModelImage, JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- AlgorithmTreT2(JDialogTreT2, double[], double[], String[], String[], String, String, double[], double[], double[], double[], double[], double[], double[], double[][], double[], double[], double[], double[], double[], double[], double[], double[][], int[], String[]) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- AlgorithmTrilateralFilter - Class in gov.nih.mipav.model.algorithms.filters
-
This is a port of openCVtrilateralFilter.h and openCVtrilateralFilter.cpp written by Tobi Vaudrey.
- AlgorithmTrilateralFilter() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- AlgorithmTrilateralFilter(ModelImage, ModelImage, double, double, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- AlgorithmTwoMRIImagesSNR - Class in gov.nih.mipav.model.algorithms
-
This module implements the National Electrical Manufacturers Association (NEMA) standard for SNR estimation in diagnostic MRI.
- AlgorithmTwoMRIImagesSNR(ModelImage, ModelImage, int, int, int, boolean, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTwoMRIImagesSNR
-
Creates a new AlgorithmTwoMRIImagesSNR object.
- algorithmType - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
- AlgorithmUnionFindComponentLabelling - Class in gov.nih.mipav.model.algorithms
- AlgorithmUnionFindComponentLabelling(ModelImage, ModelImage, int, boolean, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
- AlgorithmUnionFindWatershed - Class in gov.nih.mipav.model.algorithms
- AlgorithmUnionFindWatershed(ModelImage, ModelImage, int, boolean, int, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
- AlgorithmUnionFindWatershed.indexValueComparator - Class in gov.nih.mipav.model.algorithms
- AlgorithmUnionFindWatershed.indexValueItem - Class in gov.nih.mipav.model.algorithms
- AlgorithmUnsharpMask - Class in gov.nih.mipav.model.algorithms.filters
-
Calculates the Unsharp Mask of an image at a scale defined by the user ( unsharp image = original image - weight * blurred image); weight invalid input: '<' 1;
- AlgorithmUnsharpMask(ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
-
Constructor.
- AlgorithmUnsharpMask(ModelImage, ModelImage, float[], double, boolean, boolean, boolean, double) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
-
Constructor.
- AlgorithmVesselEnhancement - Class in gov.nih.mipav.model.algorithms
- AlgorithmVesselEnhancement(ModelImage, ModelImage, double[][], double, double, double, double, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- AlgorithmVOIExtraction - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmVOIExtraction(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
-
Creates a new AlgorithmVOIExtraction object.
- AlgorithmVOIExtractionPaint - Class in gov.nih.mipav.model.algorithms
-
DOCUMENT ME!
- AlgorithmVOIExtractionPaint(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint
-
Constructor for finding the borders of the paint on various slices of an image.
- AlgorithmVOIExtractionPaint(ModelImage, BitSet, int, int, int, short) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint
-
Construct the extractor for paint extraction to a VOI.
- AlgorithmVOIHausdorffDistance - Class in gov.nih.mipav.model.algorithms
-
Algorithm class for finding Hausdorff distance on 2 VOIs
- AlgorithmVOIHausdorffDistance(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIHausdorffDistance
-
constructor
- AlgorithmVOILogicalOperations - Class in gov.nih.mipav.model.algorithms
-
Algorithm class for performing logical operations on VOIs
- AlgorithmVOILogicalOperations(ModelImage, ViewVOIVector, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOILogicalOperations
-
constructor
- AlgorithmVOIProps - Class in gov.nih.mipav.model.algorithms
-
This class calculates a properties of an image defined by a VOI.
- AlgorithmVOIProps(ModelImage, int, JPanelPixelExclusionSelector.RangeType, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
-
constructor. note that if there are no VOIs to act on, this constructor returns quietly.
- AlgorithmVOIProps(ModelImage, int, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
-
constructor.
- AlgorithmVOIProps(ModelImage, ViewVOIVector) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
-
constructor. sets the source image of the algorithm, and presets the algorithm to calculate properties of 3D images as a volume of interest, rather than by slice.
- AlgorithmVOIProps.Calc34D - Class in gov.nih.mipav.model.algorithms
- AlgorithmVOIProps.Calc34D.ContourStats - Class in gov.nih.mipav.model.algorithms
-
Stores the statistics for a single contour, color or grayscale.
- AlgorithmVOIShapeInterpolation - Class in gov.nih.mipav.model.algorithms
- AlgorithmVOIShapeInterpolation() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation
-
constructor
- AlgorithmVOIShapeInterpolation(ModelImage, int, VOIContour, int, VOIContour, VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation
-
constructor
- AlgorithmVOISimplexOpt - Class in gov.nih.mipav.model.algorithms
-
Perform Simplex Optimization on a VOI that has been propagated to a slice to find a transformation which will make an affine "fit" a structure which the VOI fit on the previous slice (used in RFASegTool when propagating liver segmentation VOIs).
- AlgorithmVOISimplexOpt(ModelImage, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt
-
Set up the algorithm to perform optimizations on an image.
- AlgorithmVOISimplexOpt(ModelImage, VOIContour, float[], int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt
-
Set up the algorithm to perform optimizations on an image.
- AlgorithmVOISimplexOpt.CostFunction - Class in gov.nih.mipav.model.algorithms
-
Class for specifying optimization function for the simplex opt algorithm.
- AlgorithmWatershed - Class in gov.nih.mipav.model.algorithms
-
This program applies the watershed algorithm to the image.
- AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed
-
Constructs new watershed algorithm.
- AlgorithmWatershed(ModelImage, ModelImage, ModelImage, float[], Vector<AlgorithmWatershed.Seed>, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWatershed
-
Constructs new watershed algorithm.
- AlgorithmWatershed.Seed - Class in gov.nih.mipav.model.algorithms
-
Simple class to hold seed point and basin (object label) value.
- AlgorithmWaveletFuse - Class in gov.nih.mipav.model.algorithms.filters
-
MIT License Copyright (c) 2021 Hans Brouwer, Riyo Wanagiri Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
- AlgorithmWaveletFuse() - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
- AlgorithmWaveletFuse(ModelImage, ModelImage, ModelImage, int, PyWavelets.WAVELET_NAME[], int[], int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletFuse
- AlgorithmWaveletThreshold - Class in gov.nih.mipav.model.algorithms.filters
-
In hard thresholding a wavelet coefficient whose magnitude is below the product of threshold and the maximum wavelet magnitude is zeroed, and a wavelet coefficient whose magnitude is greater than or equal to the product is left unchanged.
- AlgorithmWaveletThreshold(ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
Creates a new AlgorithmWaveletThreshold object.
- AlgorithmWaveletThreshold(ModelImage, ModelImage, int, int, int, float, boolean) - Constructor for class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
Creates a new AlgorithmWaveletThreshold object.
- AlgorithmWSinc - Class in gov.nih.mipav.model.algorithms
-
Sinc function windowed with Hanning window function used for interpolation This function will create images with greater maximums and lower minimums than the original image, so if the input image type is BYTE or UBYTE, the output image type should be a SHORT.
- AlgorithmWSinc() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmWSinc
-
AlgorithmWSinc - default constructor.
- algoRotate - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
- algoSelection - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- algoSelection - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- algoSepConvolver - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion
-
Handle to the separable convolution kernel.
- algoSepConvolverB - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion
-
Handle to the separable convolution kernel.
- algoSepConvolverG - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion
-
Handle to the separable convolution kernel.
- algoSepConvolverR - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmRegularizedIsotropicDiffusion
-
Handle to the separable convolution kernel.
- algoSub - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
DOCUMENT ME!
- algoTal - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
DOCUMENT ME!
- algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate
-
DOCUMENT ME!
- algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
- algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
or if the source image is to be replaced.
- algoTrans - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
-
DOCUMENT ME!
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
- algoTrans - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- algoTransB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate
-
DOCUMENT ME!
- algoTransform - Variable in class gov.nih.mipav.view.dialogs.JDialogDirectResample
-
The algorithm.
- algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
handle to algorithm
- algoVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Algorithm for computing VOI statistics
- alias - Variable in class gov.nih.mipav.view.dialogs.JDialogServer
-
DOCUMENT ME!
- alias - Variable in class gov.nih.mipav.view.ShortCutted
-
DOCUMENT ME!
- aliasButton - Variable in class gov.nih.mipav.view.ViewFileChooserBase
-
Selection buttons
- aliasField - Variable in class gov.nih.mipav.view.dialogs.JDialogServer
-
DOCUMENT ME!
- aliasField - Variable in class gov.nih.mipav.view.ViewFileChooserBase
-
DOCUMENT ME!
- aliasLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogServer
-
DOCUMENT ME!
- align - Variable in class gov.nih.mipav.model.file.libxl.JxlPixelFormat
-
Align scanlines to a multiple of align bytes, or 0 to require no alignment at all (which has the same effect as value 1)
- alignAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogMidsagittal
-
DOCUMENT ME!
- alignmentXfrm - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos
-
DOCUMENT ME!
- AlignShapes() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection
-
Alight shapes
- AlignShapes(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection
-
Normalizes all shapes with respect to position, scale and orientation.
- AlignTo(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Wrapper to align this to ref.
- AlignTo(CAAMShape, double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Aligns this to 'ref' with respect to pose.
- AlignTo(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
- AlignTo(CDVector, double[], double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Linear alignment of this vector to another vector using the L2 norm.
- AlignTransformation(CAAMShape, double[], double[], CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Returns the transformation that aligns this to 'ref' with respect to pose.
- alim - Variable in class gov.nih.mipav.model.algorithms.Bessel
-
DOCUMENT ME!
- alim - Variable in class gov.nih.mipav.model.algorithms.BesselEP
-
DOCUMENT ME!
- alist - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
The left end points of the subintervals in the partition of the given integration range (lower, upper).
- alist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
The left end points of the subintervals in the partition of the given integration range (lower, upper).
- ALIVE - Variable in class gov.nih.mipav.model.structures.jama.SuperLU
- all - Variable in class gov.nih.mipav.model.algorithms.libdt.Range
- ALL - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase
-
Move all the channel transfer functions.
- ALL - Static variable in class gov.nih.mipav.view.ViewImageFileFilter
-
Display all files.
- ALL - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase
-
Move all the channel transfer functions.
- all_covariance_blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
- all_jpegls_bits_per_sample_are_valid() - Method in class gov.nih.mipav.model.file.charls
- ALL_READERS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.JpegMetadataReader
- allActive - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
-
Set to true when all contours of a VOI are active.
- ALLBACKGROUNDS - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- ALLBITS - Static variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
- ALLBITS - Static variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
- allButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging
-
DOCUMENT ME!
- allclasses - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
- allFiles - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
- alloc - Variable in class gov.nih.mipav.model.algorithms.KDTree
- alloc - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_context_internal
- alloc_barray(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
- alloc_fs_workspace(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
- alloc_funny_pointers(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
- alloc_resnode() - Method in class gov.nih.mipav.model.algorithms.KDTree
- alloc_sarray8(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
- alloc_sarray9to12(libjpeg.jpeg_decompress_struct, int, int, int) - Method in class gov.nih.mipav.model.file.libjpeg
- allocate() - Method in class gov.nih.mipav.model.file.jxlatte.ModularChannel
- allocate_edge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
- allocate_face_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
- Allocate_float(int, int) - Method in class gov.nih.mipav.model.file.libxl.RowBuffer
- allocate_halfedge_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
- Allocate_int(int, int) - Method in class gov.nih.mipav.model.file.libxl.RowBuffer
- allocate_vertex_trait() - Method in class gov.nih.mipav.model.algorithms.LSCM.FormTrait
- allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODE
- allocateArrays() - Method in class gov.nih.mipav.model.algorithms.ODEEP
- allocateCompressStructures() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- allocateData() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
-
Allocates data based on the data type and dataSize.
- allocateElement() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator.PixelConverter
-
Allocates a new element for the PixelConvertingSpliterator (will be called once per split)
- allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
- allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
- allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
- allocateMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
- allocateMemory(int) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer
-
Method that actually allocates the memory.
- AllocateMemory() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
- allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
- allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestClassification
- allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestProbability
- allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestRegression
- allocatePredictMemory() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.ForestSurvival
- allocateTemporaryBufferInterleaved(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
- allocateTemporaryBufferPlanar(int) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
- AllocateUserFields() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Allocates room for the three user defined fields.
- Allocator<T> - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
- Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
- Allocator - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.SparseMatrix
- Allocator() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
- AllocatorState - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
- AllocatorState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.AllocatorState
- allowableBlockSize - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- allowChangesMinMax - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
allow changes to the min and max boundaries *
- allowChangesWin - Variable in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
allow changes to the window and level boundaries *
- allowDataWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass
-
If true, allow data window output
- allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
DOCUMENT ME!
- allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- allowLevel16 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
DOCUMENT ME!
- allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel16XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel16Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
- allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
DOCUMENT ME!
- allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
- allowLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
DOCUMENT ME!
- allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
- allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
Flags are true if weighted image is not present or if weighted image subsampling occurred, false if weighted image subsampling did not occur.
- allowLevel2XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel2Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
DOCUMENT ME!
- allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- allowLevel4 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
DOCUMENT ME!
- allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel4XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel4Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
DOCUMENT ME!
- allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- allowLevel8 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
DOCUMENT ME!
- allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel8XY - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- allowLevel8Z - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- allowPaddedWarping - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
- allPresent - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
true if no slices are missing.
- allRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.R, G, B channel control buttons.
- allRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.DOCUMENT ME!
- allSeamCellIDs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- allSlices - Variable in class gov.nih.mipav.model.structures.VOIProtractor
-
Set to true, displays this protractor object for any z-value.
- allSlicesRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
-
DOCUMENT ME!
- allSlicesTouched() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmSwapSlicesVolume
- allTimes - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- ALLTREEA - Static variable in class gov.nih.mipav.view.JPanelTreeController
- ALLTREEB - Static variable in class gov.nih.mipav.view.JPanelTreeController
- AllTripletsWithinBounds() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
- allVOIBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
- allVOIs - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransformVOI
- allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
-
A radio button to select calculation for all volumes
- allVolumesButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
-
invalid input: '<' offset to center of patch.
- allx - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor
-
invalid input: '<' offset to center of patch.
- allx - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
- ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
-
invalid input: '<' all x-locations on step grid.
- ally - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchExtractor
-
invalid input: '<' all x-locations on step grid.
- ally - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
- allz - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
-
invalid input: '<' all y-locations on step grid.
- allz - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSegm
- alnrel(double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- aLog - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- aloneMenu - Variable in class gov.nih.mipav.view.ViewUserInterface
-
Stores all stand-alone menus that have been created by the user.
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.IntModelBessel
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLuminanceAdaptation
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
-
Original code from dispersionMap.m, multiscaleBlending.m, remapFun.m, robustNormalization.m, runsef.m, and sef.m located at https://github.com/chlsl/simulated-exposure-fusion-ipol was written by Charles Hessel and is being ported to Java with his permission.
- alpha - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- alpha - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- alpha - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
-
The structure sensitive parameter
- alpha - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
- alpha - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- alpha - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexMix
- alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.decision_function
- alpha - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
- alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- alpha - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- alpha - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- alpha - Variable in class gov.nih.mipav.model.algorithms.ODE
- alpha - Variable in class gov.nih.mipav.model.algorithms.ODEEP
- alpha - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
- alpha - Variable in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
- alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
- alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
- alpha - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- alpha - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
-
invalid input: '<' Bias learning rate.
- alpha - Variable in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
- alpha - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue
-
DOCUMENT ME!
- alpha - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- alpha - Variable in class gov.nih.mipav.model.file.FileInfoMRC
-
DOCUMENT ME!
- alpha - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t
-
alpha channel
- alpha - Variable in class gov.nih.mipav.model.file.libxl.JxlBlendInfo
-
Which extra channel to use as the 'alpha' channel for blend modes JXL_BLEND_BLEND and JXL_BLEND_MULADD.
- alpha - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.ClipVertex
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
-
Structure sensitive parameter
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh
-
Alpha smoothing factor.
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
- alpha - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
- alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
- alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
- alpha - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm.decision_function
- ALPHA - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
-
DOCUMENT ME!
- ALPHA - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
DOCUMENT ME!
- ALPHA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
- ALPHA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
- ALPHA - Static variable in interface gov.nih.mipav.model.file.jxlatte.ExtraChannelType
- ALPHA - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase
-
The alpha channel transfer function.
- alpha_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.DoglegStrategy
- alpha_bits - Variable in class gov.nih.mipav.model.file.libxl.JxlBasicInfo
-
Bit depth of the encoded alpha channel, or 0 if there is no alpha channel.
- alpha_exponent_bits - Variable in class gov.nih.mipav.model.file.libxl.JxlBasicInfo
-
Alpha channel floating point exponent bits, or 0 if they are unsigned.
- alpha_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- alpha_measure(int, double[], int, int, int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
- alpha_premultiplied - Variable in class gov.nih.mipav.model.file.libxl.ExtraChanelInfo
-
Whether alpha channel uses premultiplied alpha.
- alpha_premultiplied - Variable in class gov.nih.mipav.model.file.libxl.JxlBasicInfo
-
Whether the alpha channel is premultiplied.
- alpha_sq_norm_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Corrector
- alpha_status - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
- alpha_status - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
- alpha0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
- alpha0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- alphaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
arrays of 12 values used for Talairach conversions.
- alphaAssociated - Variable in class gov.nih.mipav.model.file.jxlatte.ExtraChannelInfo
- alphabetSize - Variable in class gov.nih.mipav.model.file.jxlatte.SymbolDistribution
- alphaBlend - Variable in class gov.nih.mipav.model.file.FileWriteOptions
-
DOCUMENT ME!
- alphaBlend - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
DOCUMENT ME!
- alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume
-
AlphaBlending values for compositing two images.
- alphaBlend - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentTriSliceImage
-
AlphaBlending values for compositing two images.
- alphaBlend - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Indicates the amount of blending when two images are loaded in the image frame.
- alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimate
-
alphaBlending values for compositing two images.
- alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip
-
alphaBlending values for compositing two images.
- alphaBlend - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
-
Value used to control the display when compositing two images.
- alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- alphaBlend - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
Indicates the amount of blending when two images are loaded in the image frame.
- alphaBright - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
- alphaBright - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
- alphaChannel - Variable in class gov.nih.mipav.model.file.jxlatte.BlendingInfo
- alphaDim - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIAGCWD
- alphaDim - Variable in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
- alphaIndex - Variable in class gov.nih.mipav.model.file.jxlatte.JXLImage
- alphaIndex - Variable in class gov.nih.mipav.model.file.jxlatte.PNGWriter
- alphaIndices - Variable in class gov.nih.mipav.model.file.jxlatte.ImageHeader
- alphaIsPremultiplied - Variable in class gov.nih.mipav.model.file.jxlatte.JXLImage
- alphaLine - Variable in class gov.nih.mipav.model.structures.ModelLUT
-
Fucntion that attenuates image values.
- alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian
-
DOCUMENT ME!
- alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian
-
DOCUMENT ME!
- alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian
-
DOCUMENT ME!
- alphaMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc
-
DOCUMENT ME!
- alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian
-
DOCUMENT ME!
- alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian
-
DOCUMENT ME!
- alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian
-
DOCUMENT ME!
- alphaMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc
-
DOCUMENT ME!
- alphaPrime - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJComponentSurfaceVolume
-
AlphaBlending values for compositing two images.
- alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip
-
DOCUMENT ME!
- alphaPrime - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
-
Value used to control the display when compositing two images.
- alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelCustomBlend
- alphaSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
-
Alpha blend slider.
- alphaSlider - Variable in class gov.nih.mipav.view.ViewControlsImage
-
DOCUMENT ME!
- alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- alphaSlider - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- alphatau - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
- alphaText - Variable in class gov.nih.mipav.view.dialogs.JDialogSmoothMesh
-
Text field for getting alpha smoothing factor.
- alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- alphup - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- als_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ALS_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- alsoAcpc - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- alsoOrig - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- alt_icc - Variable in class gov.nih.mipav.model.file.libxl.JxlGainMapBundle
-
Pointer to the compressed ICC profile.
- alt_icc_size - Variable in class gov.nih.mipav.model.file.libxl.JxlGainMapBundle
-
Size of the alternative ICC profile in bytes (compressed size).
- altBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog
-
DOCUMENT ME!
- altCommand - Variable in enum gov.nih.mipav.view.Argument.InstanceArgument
-
Alternate commands for a given action
- altCommand - Variable in enum gov.nih.mipav.view.Argument.StaticArgument
-
Alternate commands for a given action
- AlternateLinearSolverAndPreconditionerForSchurTypeLinearSolver(CeresSolver.SolverOptions) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionPreprocessor
- alternateRowCount - Variable in class gov.nih.mipav.view.AlternatingTableCellRenderer
-
DOCUMENT ME!
- alternating_onmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ALTERNATING_ONMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- AlternatingTableCellRenderer - Class in gov.nih.mipav.view
-
Title: AlternatingTableCellRenderer
- AlternatingTableCellRenderer() - Constructor for class gov.nih.mipav.view.AlternatingTableCellRenderer
-
Creates a new AlternatingTableCellRenderer object.
- altPressed - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- altTimeCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- altTimeDicomTag - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- altTimeTag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
- altTimeTagField - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- altTimeTagLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.default_traits
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits12
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16pair
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16quad
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16triplet
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32
- always_lossless_and_default_parameters - Static variable in class gov.nih.mipav.model.file.charls.lossless_traits32pair
- always_lossless_and_default_parameters - Static variable in class gov.nih.mipav.model.file.charls.lossless_traits32quad
- always_lossless_and_default_parameters - Static variable in class gov.nih.mipav.model.file.charls.lossless_traits32triplet
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8pair
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8quad
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8triplet
- always_lossless_and_default_parameters - Variable in class gov.nih.mipav.model.file.charls.traits
- always_split_variable_names - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
- AmAl() - Constructor for class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
- aMax - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLight
-
The colors associated with the light, typically all white.
- ambient - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareMaterial
-
DOCUMENT ME!
- AMBIENT - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightDirectional
-
DOCUMENT ME!
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightPoint
-
DOCUMENT ME!
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSpot
-
DOCUMENT ME!
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Define attenuation lighting colors.
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe
-
Attenuation lighting setup.
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.DefaultProbe
-
Ambient, emissive, sepcualar, diffuse color is used for the attenuation lighting.
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe
-
Attenuation lighting setup.
- ambientColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe
-
Attenuation lighting colors.
- ambientRadio - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Radio button for different light type.
- ambientRadio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
-
Radio button for different light type.
- Ami - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
- Amj - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.AmAl
- amp - Variable in class gov.nih.mipav.model.algorithms.FitGaussian
-
Amplitude parameter
- amp - Variable in class gov.nih.mipav.model.algorithms.FitLaplace
-
Amplitude parameter
- amp - Variable in class gov.nih.mipav.model.algorithms.FitLorentz
-
Amplitude parameter
- amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
- amp - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.GMM
- amp_max - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
- amp_min - Variable in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
- ampFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogLaplacian
-
DOCUMENT ME!
- amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
- amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
- amplificationFactor - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmLaplacian
-
An amplification factor greater than 1.0 causes this filter to act like a highpass filter.
- amplificationIndex - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- amplitude - Variable in class gov.nih.mipav.view.BarMeter
-
DOCUMENT ME!
- AN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- analuc(int[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- Analysis(double[], double[], String, String, String, int, String, double, boolean, boolean, String, String, String, String) - Constructor for class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- analysisGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- analyticalJacobian - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
- analyticContinuationUsed - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
If false, function used If true, analytic continuation of function used.
- analyticJacobian - Variable in class gov.nih.mipav.model.algorithms.NESolve
- analyze() - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
- Analyze(CAAMShape, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
-
Warpper to analyze the image.
- Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
-
Analyze image.
- Analyze(CAAMShape, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
-
This method samples the image intensities under a user-supplied shape into a texture vector.
- Analyze(CAAMShape, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
-
Warpper to analyze the image.
- Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
-
Analyze image
- Analyze(CAAMShape, CDVector, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
-
This method samples the image intensities under a user-supplied shape into a texture vector.
- ANALYZE - Enum constant in enum gov.nih.mipav.model.algorithms.SIFT3D.im_format
- ANALYZE - Static variable in class gov.nih.mipav.model.file.FileUtility
-
Analyze format (Mayo). extension: .img, .hdr
- ANALYZE_AUX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- ANALYZE_AXIS_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- ANALYZE_CAL - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- ANALYZE_DATATYPE - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- ANALYZE_DBNAME - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- ANALYZE_DESCRIPTION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- analyze_dst_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
- ANALYZE_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility
-
Multiple files of type analyze.
- ANALYZE_ORIENTATION - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- ANALYZE_ORIGINATOR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- analyze_src_img() - Method in class gov.nih.mipav.model.algorithms.ImageQuality
- ANALYZE_VOX - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- analyzeFile - Variable in class gov.nih.mipav.view.dialogs.JDialogAnalyzeNIFTIChoice
-
Radio button to indicate that an analyze img file should be written out.
- AnalyzeTest(CAAMShape, CAAMShape, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest
-
Benchmarks the software warping method against the OpenGL.
- ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_BMAP_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_BUCK_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_CT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_DIFF_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_EPI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_FSE_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_MRA_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_MRAN_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_OMRI_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_PET_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ANAT_SPECT_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileAfni
-
funcType for anatType == true.
- ANAT_SPGR_TYPE - Static variable in class gov.nih.mipav.model.file.FileInfoAfni
-
funcType for anatType == true.
- anatomicalRef - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
84 - 3 bytes - Anatomical Reference.
- anatomyParentnameString - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- anatType - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- anchor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.SnakeInitialiser.Node
- anchor(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Add an anchor point to the livewire contour.
- anchor(Point) - Method in class gov.nih.mipav.view.Rubberband
-
Anchors the rubberband to this point.
- anchor(Point) - Method in class gov.nih.mipav.view.RubberbandLivewire
-
Calls seed on this point to set up costGraph array; then anchors point.
- anchorBSpline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Add an anchor point to the BSpline line contour.
- anchorPane - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
DOCUMENT ME!
- anchorPolyline(int, int, boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Add an anchor point to the poly line contour.
- AnchorPosition() - Constructor for enum gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.AnchorPosition
- anchorPt - Variable in class gov.nih.mipav.view.Rubberband
-
DOCUMENT ME!
- anchorPt - Variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
DOCUMENT ME!
- and - Variable in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
radio button
- AND - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- andButton - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- andTable - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder
-
DOCUMENT ME!
- angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
- angCorrGT - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
-
DOCUMENT ME!
- angioFlag - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- angle - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK.KeyPoint
- angle - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
- angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDetFeatureOrientation
- angle - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlFrameOrientedDisc
-
invalid input: '<' radius or scale
- angle - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.polygon
- angle - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity.KeyPoint
- angle - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_graphedge
- angle(double[], boolean[], int[], double[][], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
- angle(float[], float[], float[]) - Static method in class gov.nih.mipav.util.MipavMath
-
Calculates the angle between two lines.
- angle(LSCM.Point) - Method in class gov.nih.mipav.model.algorithms.LSCM.Point
- angle(Point3, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
- Angle(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
- ANGLE - Enum constant in enum gov.nih.mipav.model.file.FileInfoBase.UnitType
- angle_distortion(double[][], int[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SphericalConformalMap
- angle_rad_2d(double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
- angle_sums() - Method in class gov.nih.mipav.model.algorithms.Confmap.CETM
- ANGLE7(double[], int, boolean) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- AngleAxisNearZeroRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- AngleAxisRotatePoint(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
- AngleAxisRotatePointGivesSameAnswerAsRotationMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- AngleAxisToQuaternion(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
- AngleAxisToRotationMatrix(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
- AngleBetween(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MathUtility
- AngleBetween(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MathUtility
- AngleFromToCCW(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MathUtility
- AngleFromToCCW(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MathUtility
- angleIncrement - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- angleIncrement - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
- ANGLES(int, double[][], double[], int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
- anglesRequired - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D
- anglesRequired - Variable in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
- ANGSTROMS - Enum constant in enum gov.nih.mipav.model.file.FileInfoBase.Unit
-
Unit of measurement angstroms.
- ANGSTROMS - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
Unit of measurement angstroms.
- ANGSTROMS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
String version of units of measurement - angstroms.
- angulationCorrection(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- animate() - Method in class gov.nih.mipav.view.dialogs.JDialogAnimate
-
Invoke the animation frame.
- Animate() - Constructor for class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
- animateAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- animateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- animateCheckerboard() - Method in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard.Animate
- animateCurve - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- animateLatticeModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- animateLattices - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- animateSlice - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- animateStep - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- animateStop - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- animateThread - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- animateTime - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- animating - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- animation - Variable in class gov.nih.mipav.model.file.libxl.JxlBasicInfo
-
Animation header with global animation properties for all frames, only used if have_animation is JXL_TRUE.
- animationFrame - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- animationHeader - Variable in class gov.nih.mipav.model.file.jxlatte.ImageHeader
- AnimationHeader(int, int, int, boolean) - Constructor for class gov.nih.mipav.model.file.jxlatte.AnimationHeader
- AnimationHeader(jxlatte.AnimationHeader) - Constructor for class gov.nih.mipav.model.file.jxlatte.AnimationHeader
- animationThread - Variable in class gov.nih.mipav.view.LineMeter
-
monitor animation happens in its own thread.
- aniSampleRate - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- anisotropyBrowseButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
buttons *
- anisotropyBuffer - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage
-
anisotropy file data buffer *
- anisotropyFilename - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
names of eigenvector and anisotropy files*
- anisotropyFilename - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
names of eigenvector and anisotropy files*
- anisotropyImage - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
anisotropy src image *
- anisotropyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
anisotropy src image *
- anisotropyLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
labels *
- anisotropyMax - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
anisotropy max *
- anisotropyMax - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
anisotropy max *
- anisotropyMax - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage
-
anisotropy max *
- anisotropyMaxPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
panels *
- anisotropyMaxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
panels *
- anisotropyMaxSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
various sliders in dialog *
- anisotropyMaxSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
various sliders in dialog *
- anisotropyMaxTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
textfields *
- anisotropyMaxTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
textfields *
- anisotropyMin - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
anisotropy min *
- anisotropyMin - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
anisotropy min *
- anisotropyMin - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage
-
anisotropy min *
- anisotropyMinPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
panels *
- anisotropyMinPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
panels *
- anisotropyMinSlider - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
various sliders in dialog *
- anisotropyMinSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
various sliders in dialog *
- anisotropyMinTextField - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
textfields *
- anisotropyMinTextField - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
textfields *
- anisotropyPath - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
textfields *
- anlerr(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMultiExponentialFitting
- anls_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ANLS_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- annimationSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation
- annotatePtsCounter - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
number of annotate points along the specified path.
- annotatePtsList - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
annotate path planning points list
- annotateVideos() - Method in class gov.nih.mipav.model.algorithms.libdt
- Annotation - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- ANNOTATION - Static variable in class gov.nih.mipav.model.structures.VOI
-
Indicates that the VOI is of type ANNOTATION for adding text annotations to an image.
- ANNOTATION - Static variable in class gov.nih.mipav.view.ViewJComponentBase
-
Indicates the MIPAV cursor is in annotation VOI mode
- annotationAnimationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationChanged() - Method in interface gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.AnnotationListener
-
AnnotationListeners are updated whenever annotations change in the LatticeModel.
- annotationChanged() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationChanged(VOI, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- annotationDiameters - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationGroupList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationGroupTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationGroupTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationHeight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
- annotationLabelsDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationList - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
- AnnotationListener - Interface in gov.nih.mipav.view.renderer.WildMagic.WormUntwisting
- annotationListeners - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- annotationListPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationNames - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationNextButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
DOCUMENT ME!
- annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
- annotationPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationPrefix - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- annotationPrefix() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationPrevButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
DOCUMENT ME!
- annotations - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
- annotationSpheres - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationSpheresColors - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationSpheresDisplay - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationSpheresIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- AnnotationSplineControlPts() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel.AnnotationSplineControlPts
- annotationsStraight - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
- annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- annotationTableModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
- annotationTexture - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
- annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML
-
DOCUMENT ME!
- annotationVector - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- annotationVOI - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationVOIs - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- annotationVOIsUpdate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
- annotationWidth - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOI
- ANON_TAB - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
DOCUMENT ME!
- anonDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
-
DOCUMENT ME!
- anonymizationComplete(JDialogAnonymizeDirectory.AnonymizeDicomDirectories) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
A psuedo-event-handler.
- anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna4X
- anonymize() - Method in class gov.nih.mipav.model.file.FileInfoGESigna5X
- anonymize(boolean[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc
-
Removes requested identifying info.
- anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom
-
removes any and all personal information in the info that a doctor, patient, researcher may want to have deleted from the image, such as patient name or patient ID number--from this slice given by this fileInfoDicom.
- anonymize(boolean[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Anonymize the image by altering the sensitive data of each slice to something generic.
- anonymize(boolean[], boolean, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage
-
New version of anonymize that allows you to replace the original tag value with a blank string or zero depending on the data type.
- anonymizeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
buttons for toolbar *
- AnonymizeDicomDirectories(File[], File, String, int, int, boolean) - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
-
sets up the anonymizer thread.
- anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer
-
Find face, blur face, commit, or cancel based on which buttons in the dialog are pressed.
- anonymizeFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET
-
Executes the de-facing algorithm.
- anonymizeImage(File, File, int[], int) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
-
actually does the grunt-work of reading the designaated image-file, anonymizing it, and writing the file to the deisgnated destination directory.
- anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom
-
Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
- anonymizePublicSequenceTags(FileDicomKey[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Method to anonymize public tags not in the DICOM Supplement 55 that may appear in sequence tags.
- anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom
-
Method to anonymize public tags that do not appear in the DICOM Supplement 55.
- anonymizePublicTags(FileDicomKey[], boolean) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Method to anonymize public tags that do not appear in the DICOM Supplement 55.
- anonymizer - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
Access to the running thread which is anonymising directories.
- anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.file.FileInfoDicom
-
Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
- anonymizeSequenceTags(boolean[], Vector<FileDicomSQItem>, boolean) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Method to anonymize the tags found in the DICOM supplement 55 that may appear in sequence tags.
- anonymizeTagIDs - Static variable in class gov.nih.mipav.model.file.FileInfoDicom
-
these are the DICOM tag ID numbers corresponding to the tags which are anonymized.
- anonymousName - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
-
DOCUMENT ME!
- aNormal - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- aNormal - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- ANOTHER_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage
-
AC-PC: Another midsagittal reference point.
- anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
- anotherCall() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- anotherMidSagPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
- anotherPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- anotherPt - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
- anotherPtDicom - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ansR - Variable in class gov.nih.mipav.model.algorithms.Statistics
- ansState - Variable in class gov.nih.mipav.model.file.jxlatte.EntropyStream
- ANSSymbolDistribution(jxlatte.Bitreader, int) - Constructor for class gov.nih.mipav.model.file.jxlatte.ANSSymbolDistribution
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
Final answer after registration.
- answer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Final answer after registration.
- ANTERIOR_PT - Static variable in class gov.nih.mipav.view.ViewJComponentTriImage
-
Talairach: Anterior reference point.
- anteriorPt - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
markers used for +ACPC to +tlrc transformation.
- anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- anteriorPt - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- anteriorPt3Df - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- ANTI_ALIASED_SAMPLING_MODE - Static variable in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
- ANTI_SYMMETRIC - Enum constant in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
- antialiasing - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- antigradient2Algo - Variable in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
-
DOCUMENT ME!
- antigradient2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
- antigradient3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAntigradient2
- AntipodalCornerIndex(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.MarchingCubes.Cube
- ANY_DIR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake
-
Indicates boundary can move in or out.
- Aopt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
- ap - Variable in class gov.nih.mipav.model.file.FileZVI
- apCenter - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- apCenter - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- aperture - Variable in class gov.nih.mipav.model.file.FileSVS
- aperture - Variable in class gov.nih.mipav.model.file.FileTiff
- apertureToFStop(double) - Static method in class gov.nih.mipav.model.file.MetadataExtractor.PhotographicConversions
-
Converts an aperture value to its corresponding F-stop number.
- apInvert - Variable in class gov.nih.mipav.model.file.FileNRRD
-
True for RAS and LAS, false for LPS.
- APLUSBI - Enum constant in enum gov.nih.mipav.view.Preferences.ComplexDisplay
-
Displays complex images in a + bi format
- apotomeAutoShutterUsed - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeAveragingCount - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeCamFilterHarmonics - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeCamGenericCameraName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeCamNormalize - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeCamPhaseAngles - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeFilterName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeFilterStrength - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeFullPhaseShift - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGratingPeriod - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridName - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPosition0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPosition1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPosition2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPosition3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPositionChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPositionChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPositionChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeGridPositionChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- apotomeProcessingMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- app0(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app0(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP0 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP0 JPEG segment identifier.
- APP0 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP0 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- APP0_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
- app1(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app1(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP1 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP1 JPEG segment identifier.
- APP1 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP1 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app10(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app10(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP10 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP10 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app11(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app11(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP11 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP11 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app12(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app12(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP12 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP12 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app13(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app13(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP13 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP13 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app14(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app14(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP14 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP14 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- APP14_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
- app15(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app15(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP15 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP15 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app2(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app2(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP2 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP2 JPEG segment identifier.
- APP2 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP2 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app3(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app3(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP3 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP3 JPEG segment identifier.
- APP3 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP3 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app4(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app4(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP4 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP4 JPEG segment identifier.
- APP4 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP4 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app5(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app5(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP5 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP5 JPEG segment identifier.
- APP5 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP5 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app6(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app6(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP6 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP6 JPEG segment identifier.
- APP6 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP6 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app7(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app7(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP7 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP7 JPEG segment identifier.
- APP7 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP7 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app8(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app8(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP8 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP8 JPEG segment identifier.
- APP8 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP8 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- app9(InputStream) - Method in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- app9(InputStream) - Method in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- APP9 - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APP9 JPEG segment identifier.
- APP9 - Static variable in interface gov.nih.mipav.model.file.FileSVS.JPEGConstants
- APP9 - Static variable in interface gov.nih.mipav.model.file.FileTiff.JPEGConstants
- APPA - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APPA (App10) JPEG segment identifier.
- APPB - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APPB (App11) JPEG segment identifier.
- appBody - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe
-
DOCUMENT ME!
- APPC - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APPC (App12) JPEG segment identifier.
- appConeHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe
-
DOCUMENT ME!
- appContext - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ
-
Application context PDU type.
- APPD - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APPD (App13) JPEG segment identifier.
- AppData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.AppData
- APPE - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APPE (App14) JPEG segment identifier.
- append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor.UnorderedSetInt
-
Append an element to the end of the storage array.
- append(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor.UnorderedSetInt
-
Append an element to the end of the storage array.
- append(int) - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh.UnorderedSetInt
-
Append an element to the end of the storage array.
- append(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView.UnorderedSetInt
-
Append an element to the end of the storage array.
- append(String) - Method in class gov.nih.mipav.view.dialogs.JDialogText
-
Appends the text area with the message.
- append(String) - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph
-
Appends the text area with the message.
- append(String, int) - Method in class gov.nih.mipav.view.ViewJFrameMessage
-
Appends the text area with the message.
- append(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMessage
-
Method to append text to an attached JTextArea (not DEBUG or DATA areas).
- APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
DOCUMENT ME!
- APPEND - Static variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
File handler output mode - append.
- append_block(CopyMoveAttackDetection2.Block) - Method in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
- append_ones_to_bit_stream(int) - Method in class gov.nih.mipav.model.file.charls.scan_encoder
- append_to_bit_stream(int, int) - Method in class gov.nih.mipav.model.file.charls.scan_encoder
- append_to_bit_stream_ff_pattern() - Method in class gov.nih.mipav.model.file.charls
- append_to_bit_stream_forward(int, int) - Method in class gov.nih.mipav.model.file.charls.scan_encoder_tester
- append_to_bit_stream_zero_length() - Method in class gov.nih.mipav.model.file.charls
- appendAgePart(StringBuilder, int, String) - Method in class gov.nih.mipav.model.file.MetadataExtractor.Age
- AppendArrayToString(int, double[], String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
- appendButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
-
Button for appending selected rows to end of JTable
- AppendCols(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
- appendDefaultData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor
-
appends a non editable row to the end of the primary table.
- AppendDiagonal(double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix
- AppendE(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- AppendI(int, IDList, IDList, int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- appendImageDescription(String) - Method in class gov.nih.mipav.model.file.FileInfoXML
-
Appends a string to the image description.
- appendInvestigatorData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends an editable row to the end of the investigators table.
- appendKey(String) - Method in class gov.nih.mipav.model.structures.CustomHashtable
-
Starts with a key that already exists in the hashtable and appends integers to its toString().
- appendLengthTag(FileDicomTag, HashMap<Integer, FileInfoDicom.LengthStorageUnit>) - Method in class gov.nih.mipav.model.file.FileInfoDicom
- appendMessage(String) - Method in class gov.nih.mipav.view.JPanelProgressBar
-
DOCUMENT ME!
- appendMessage(String) - Method in interface gov.nih.mipav.view.ProgressBarInterface
-
DOCUMENT ME!
- appendMessage(String) - Method in class gov.nih.mipav.view.ViewJProgressBar
-
Concatenates a message to the message area of the progress bar.
- AppendN(LODMesh.Triangle, LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- AppendNE(LODMesh.Edge, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- AppendNE(LODMesh.Edge, LODMesh.NEList, LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- appendParameter(String, String, String, String, String, String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends an editable row with the given parameter data to the proper set display table.
- appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
appends a row to the end of the editable table.
- appendPrimaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends a non editable row to the end of the primary table.
- appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
- appendPrimaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends a row to the end of the primary info table. assigns this name/value pair to be editable and adds the fileinfo to listen for this name.
- AppendRows(CeresSolver.BlockSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
- AppendRows(CeresSolver.CompressedRowSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedRowSparseMatrix
- AppendRows(CeresSolver.TripletSparseMatrix) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.TripletSparseMatrix
- appendScanData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends an editable row to the end of the scan information table.
- appendSecondaryData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
appends a row to the end of the Secondary Info table.
- appendSecondaryData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
appends a row to the end of the editable table.
- appendSendMessage(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Appends the text area with the message.
- appendSubjectData(String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends an editable row to the end of the subject information table.
- AppendT(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- appendTagData(String, String, String, int[]) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
appends an editable row to the end of the tag table.
- appendToFile(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
- appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
- appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
- appendToFileInternal(BufferedWriter) - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
- appendUserDefinedData(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor
-
DOCUMENT ME!
- AppendV(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- AppendVF(int, IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- APPF - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
-
APPF (App15) JPEG segment identifier.
- appHead - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe
-
DOCUMENT ME!
- AppleMakernoteDescriptor(MetadataExtractor.AppleMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDescriptor
- AppleMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleMakernoteDirectory
- AppleRunTimeMakernoteDescriptor(MetadataExtractor.AppleRunTimeMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
- AppleRunTimeMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDirectory
- AppleRunTimeReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeReader
- AppletFrame - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework
- AppletFrame(String, Applet, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.AppletFrame
- application_data0 - Variable in class gov.nih.mipav.model.file.charls
- application_data1 - Variable in class gov.nih.mipav.model.file.charls
- application_data10 - Variable in class gov.nih.mipav.model.file.charls
- application_data11 - Variable in class gov.nih.mipav.model.file.charls
- application_data12 - Variable in class gov.nih.mipav.model.file.charls
- application_data13 - Variable in class gov.nih.mipav.model.file.charls
- application_data14 - Variable in class gov.nih.mipav.model.file.charls
- application_data15 - Variable in class gov.nih.mipav.model.file.charls
- application_data2 - Variable in class gov.nih.mipav.model.file.charls
- application_data3 - Variable in class gov.nih.mipav.model.file.charls
- application_data4 - Variable in class gov.nih.mipav.model.file.charls
- application_data5 - Variable in class gov.nih.mipav.model.file.charls
- application_data6 - Variable in class gov.nih.mipav.model.file.charls
- application_data7 - Variable in class gov.nih.mipav.model.file.charls
- application_data8 - Variable in class gov.nih.mipav.model.file.charls
- application_data9 - Variable in class gov.nih.mipav.model.file.charls
- applicationName - Variable in class gov.nih.mipav.view.ViewFileChooserBase
-
DOCUMENT ME!
- appliedCorrections - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- APPLY - Static variable in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders
-
DOCUMENT ME!
- APPLY - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- apply_Affine_xyz(SIFT3D.Affine, double, double, double, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.EvaluateOptions
- apply_loss_function - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceOptions
- apply_Sep_FIR_filter(SIFT3D.Image, SIFT3D.Image, SIFT3D.Sep_FIR_filter, double) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- apply_sign(int, int) - Method in class gov.nih.mipav.model.file.charls
- apply_sign_for_index(int, int) - Method in class gov.nih.mipav.model.file.charls
- apply_walls(Voro.voronoicell_neighbor, double, double, double) - Method in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
- apply_walls(Voro.voronoicell, double, double, double) - Method in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
-
Cuts a Voronoi cell by all of the walls currently on the list.
- applyACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
- applyAsFloat(float) - Method in class gov.nih.mipav.model.file.jxlatte.ChebyschevApproximation
- applyAsFloat(float) - Method in interface gov.nih.mipav.model.file.jxlatte.FloatUnaryOperator
- applyBackpropagation(Double[]) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.NeuralNetwork
- applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase
-
Apply button is used to apply the setting of the dialog.
- applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- applyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Applies bounding box/shading/name display and other UI changes to ModelImage
- applyButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Apply button is used to apply the setting of the dialog.
- applyClipFilter(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- applyClosePanel - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes
-
The panels that make up this Dialog
- applyColorChange() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties
-
Update the color changes to the Before sphere and the original surface.
- applyColorChange() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
-
Update the color changes to the Before sphere and the original surface.
- applyComponentOrientation(ComponentOrientation) - Method in class gov.nih.mipav.view.JScrollMenu
- applyDefField(ModelImage, ModelImage, int, Matrix, ModelImage, int[], float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
-
Creates a deformation field from the input matrix and deformation field and applies it to the input image.
- applyDeformationField(int, TransMatrix, TransMatrix[], ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
-
Applies the input B0 to T2 matrix, list of within-volume matrices and input deformation field to the 4D volume series.
- ApplyForAcceptance(CAAMInitializeStegmann.CAAMInitEntry) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates
-
Apply for acceptance of a new initialization hypothesis.
- applyGenericName() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
converts the name and sequence JTextFields into native types.
- applyK(double[][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- applyKColor(double[][][], double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
-
Apply small kernel to smooth out data.
- applyKernel() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
-
Apply small Gaussian kernel to smooth out data.
- ApplyOrdering(HashMap<double[], CeresSolver.ParameterBlock>, CeresSolver.OrderedGroups<double[]>, CeresSolver.Program, String[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
- applyppftfilter(double[][][][], double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- applyRotation(double[][], double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor
-
applySculpt: abstract function, implementation depends on whether the instance is VolumeTextureSculptor or VolumeSculptor.
- applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.TextureSculptor
-
applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
- applySculpt() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeSculptor
-
applySculpt: called by ViewJFrameVolumeView when the user presses the "Apply Sculpt" button.
- applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender
-
Apply the sculpt region to the volume.
- applySculpt(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
Apply the sculpt region to the volume.
- applySculpt(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM
-
Apply the sculpt region to the volume data.
- applySculptRegion() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelSculptor
-
Cull the sculpt region through the 3D volume.
- applySculptRegion(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSculptor_WM
-
Cull the sculpt region through the 3D volume.
- applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- applyTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB
-
false = apply algorithm only to VOI regions apply same threshold to all.
- applyToAllBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
false = apply algorithm only to VOI regions apply same threshold to all.
- applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor
-
accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
- applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
-
accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
- applyToAllSlices() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor
-
accessor to see the value of the selected value of the applyToAllSlicesCheckBox.
- applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor
-
DOCUMENT ME!
- applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
-
DOCUMENT ME!
- applyToAllSlicesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor
-
DOCUMENT ME!
- applyToBlueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
enable blue threshold.
- applyToGreenBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
enable green threshold.
- applyToRedBox - Variable in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
enable red threshold.
- applyTransforms() - Method in class gov.nih.mipav.model.file.jxlatte.ModularStream
- applyWindowLevel - Variable in class gov.nih.mipav.view.renderer.JDialogRendererAVI
-
Flag to indicate to apply window level or not.
- applyWorldToModelTransform(Matrix3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet
-
Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
- applyWorldToModelTransform(Vector3f, Vector3f, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.SoftwareLightSet
-
Apply a 3x3 transformation to the software world light position and direction which are in world coordinates so that they are converted to model coordinates.
- APPN_DATA_LEN - Static variable in class gov.nih.mipav.model.file.libjpeg
- approveSelection() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample
-
DOCUMENT ME!
- approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- approx1(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- approx2(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- approx3(double) - Method in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- ApproxExample(String, ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
-
Doing model approximation of an (unseen) example.
- approximate_eigenvalue_scale_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LowRankInverseHessian
- appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.CoolTipProbe
-
DOCUMENT ME!
- appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.RegularProbe
-
DOCUMENT ME!
- appTip - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe
-
Thermal probe appearance.
- Aprod(int, int, int, int[], int[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOL
- Aprod(int, int, int, int[], int[], DoubleDouble[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.structures.jama.LUSOLEP
- aprod_ez(LSQR.lsqr_solver_ez, int, int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR
- aprod1(LSQR.lsqr_solver_ez, int, int, int, int, double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.LSQR
-
!
- aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
set to give 2 digits to the right of the decimal.
- aps - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
set to give 2 digits to the right of the decimal.
- apser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- APSI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- apx - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- apy - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- apz - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- AQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- aradd(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Accepts two arrays of numbers, a and b, and returns the sum of the array c.
- arbiMouseRotateBehavior - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Mouse Rotate behavior of the arbitrary clipping plane.
- arbiTG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Tranform group for arbitrary clipping plane.
- arbiTrans3d - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
- arbitrary_SG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Arbitrary clipping plane switch group.
- ArbitratyEquation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- ArbRotate() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeClip
-
Scene-graph node for rotating the arbitrary clipping plane.
- ARCH_ALPHA - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates an alpha system architecture.
- ARCH_AMD64 - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates an amd64 system architecture.
- ARCH_ARM - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates an arm system architecture.
- ARCH_IA64 - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates an ia64 (itanium) system architecture.
- ARCH_MIPS - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates a mips system architecture.
- ARCH_PA_RISC - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates a PA RISC system architecture.
- ARCH_PPC - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates a 32-bit power pc system architecture.
- ARCH_PPC64 - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates a 64-bit power pc system architecture.
- ARCH_SPARC - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates a sparc system architecture.
- ARCH_UNKNOWN - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates an unknown system architecture.
- ARCH_X86 - Enum constant in enum gov.nih.mipav.view.Preferences.SystemArchitecture
-
Indicates an x86 system architecture.
- architecture - Variable in class gov.nih.mipav.model.provenance.ProvenanceEntry
- arcLength - Variable in class gov.nih.mipav.model.file.jxlatte.SplineArc
- arcs - Variable in class gov.nih.mipav.model.file.jxlatte.Spline
- ArcTan2(double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Factor
- ArctanLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
- ARCTY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- ard - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ard - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserExtrReg
- area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER.VlMserReg
- area - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.PolygonShapeInfo
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
- area - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
- area() - Method in class gov.nih.mipav.model.structures.VOI
-
Finds the area of the entire VOI of the VOIContour type only.
- area() - Method in class gov.nih.mipav.model.structures.VOIBase
- area() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
Calculate the surface mesh area.
- area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
- area(float[], float[], int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
Shape area computation
- area(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
- area(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangulation
- Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh
-
Returns the total area of all triangles in the mesh.
- Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
- Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
-
Returns the area.
- Area() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
- Area(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Returns the total area of the shape (with holes excluded).
- area_distortion(double[][], int[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SphericalConformalMap
- area_map(int[][], SuperLU.doublecomplex[], double[]) - Method in class gov.nih.mipav.model.algorithms.SphericalConformalMap
- area_measure(int, double[], int, int, int[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Triangulation
- areaDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
-
string to test for when checking on statistics to calculate.
- areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean
- areaFraction - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCircleGeneration.IntTorquato95ModelMean2
- areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
- areal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- areaLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
The area label.
- areaLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
The area label.
- areaText - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Displays the area of triangle.
- areaText - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
Displays the area of triangle.
- areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Calculates twice the area (cross product of two vectors) of a triangle given three points.
- areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
-
Calculates twice the area (cross product of two vectors) of a triangle given three points.
- areaTwice(float, float, float, float, float, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.TriangleClassificationWidget
-
Determines which side of the line a point lies on, used for determining if a point is inside or outside a closed loop.
- AredoublesEqual(double, double) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MathUtility
- areMultipleAllowed() - Method in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
- areSiblingsSelected(TreePath) - Method in class gov.nih.mipav.view.CheckTreeManager.CheckTreeSelectionModel
- AreTwoEdgesTheSame(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.ConstrainedDelaunaySloan
- arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel
-
DOCUMENT ME!
- arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2i
-
DOCUMENT ME!
- arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2p
-
DOCUMENT ME!
- arg - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitFullIntModel2s
-
DOCUMENT ME!
- argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- argb(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
-
Packs 8bit ARGB color components into a single 32bit integer value.
- ARGB - Enum constant in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
-
Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
- ARGB - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned byte value. (4 * UBYTE(8 bits) = 4 bytes)
- argb_bounded(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
-
Packs 8bit ARGB color components into a single 32bit integer value.
- argb_bounded(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
-
Packs 8bit ARGB color components into a single 32bit integer value.
- argb_fast(int, int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
-
Packs 8bit ARGB color components into a single 32bit integer value.
- argb_fast(int, int, int, int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
-
Packs 8bit ARGB color components into a single 32bit integer value.
- ARGB_FLOAT - Enum constant in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
-
Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
- ARGB_FLOAT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a float value. (4 * FLOAT(32 bits) = 16 bytes)
- ARGB_FLOAT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate, as a String, that the data buffer is of type color (ARGB - floats).
- argb_fromNormalized(double, double, double, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
-
Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
- argb_fromNormalized(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
-
Packs normalized ARGB color components (values in [0.0 .. 1.0]) into a single 32bit integer value.
- ARGB_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned bytes).
- ARGB_UINTEGER - Enum constant in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
- ARGB_UINTEGER - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
- ARGB_UINTEGER_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
- ARGB_USHORT - Enum constant in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
-
Data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
- ARGB_USHORT - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate that the data buffer is of type ARGB where each channel (A = alpha, R = red, G = green, B = blue) is represented by a unsigned short value. (4 * USHORT(16 bits) = 8 bytes)
- ARGB_USHORT_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate, as a String, that the data buffer is of type color (ARGB - unsigned shorts).
- ARGIN1(double, double, int, double[], double[], double[], double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- ARGUM(double, double[]) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
- Argument - Interface in gov.nih.mipav.view
- Argument.InstanceArgument - Enum in gov.nih.mipav.view
- Argument.StaticArgument - Enum in gov.nih.mipav.view
- arial13 - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
- arial13 - Static variable in class gov.nih.mipav.view.MipavUtil
-
A 13 point, plain, arial font.
- arial13B - Variable in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection.MyCellRenderer
- arial13B - Static variable in class gov.nih.mipav.view.MipavUtil
-
A 13 point, bold, arial font.
- arith_ac_K - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- arith_code - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- arith_dc_L - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- arith_dc_U - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- arith_decode(libjpeg.jpeg_decompress_struct, int[]) - Method in class gov.nih.mipav.model.file.libjpeg
- arith_entropy_decoder() - Constructor for class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
- arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
- arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GoodTestTerm
- arity_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
- ARMIJO - Enum constant in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchType
- ArmijoLineSearch(CeresSolver.LineSearchOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.ArmijoLineSearch
- armult(double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Accepts array a and scalar b, and returns the product array c.
- arrangeCTZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
Arrange the table in CTZ order.
- arrangeCZT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
Arrange the table in CZT order.
- arrangeTCZ(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
Arrange the table in TCZ order.
- arrangeTZC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
Arrange the table in TZC order.
- arrangeZCT(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
Arrange the table in ZCT order.
- arrangeZTC(int, int, int) - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
Arrange the table in ZTC order.
- array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayItem
- array - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexIntegerdoubleArrayItem
- array - Variable in class gov.nih.mipav.model.algorithms.CVODES.UserData
- array - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.LU_stack_t
- ARRAY - Static variable in class gov.nih.mipav.model.file.FileDM3
-
DOCUMENT ME!
- array1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- array1 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
- array2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.indexArrayArrayItem
- arrayContains(String, String...) - Method in class gov.nih.mipav.model.file.jxlatte.JXLatte
- arrayCopy(double[], int, float[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil
-
Copy a double array to a float array.
- arrayCopy(float[], int, double[], int, int) - Static method in class gov.nih.mipav.util.ArrayUtil
-
Copy a float array to a double array
- ArrayIndexingOrderValues - Static variable in class gov.nih.mipav.model.file.FileSurfaceGiftiXML
- ArrayInfo() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.ArrayInfo
- arrayLength - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution
-
DOCUMENT ME!
- arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
-
Size of buffers (realData and imagData).
- arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
-
Size of buffers (realData and imagData).
- arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
DOCUMENT ME!
- arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
DOCUMENT ME!
- arrayLength - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- ArrayListTransferable(ArrayList<String>) - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler.ArrayListTransferable
-
Creates a new ArrayListTransferable object.
- ArrayListTransferHandler() - Constructor for class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler
-
Creates a new ArrayListTransferHandler object.
- arrayLocationArray - Variable in class gov.nih.mipav.model.file.FileDM3
-
DOCUMENT ME!
- arrayName - Variable in class gov.nih.mipav.model.file.FileInfoMATLAB
- arrayPos - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
- arraySizeArray - Variable in class gov.nih.mipav.model.file.FileDM3
-
DOCUMENT ME!
- ArraySorter - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm
-
Copyright (c) 2007-2014 The LIBLINEAR Project.
- ArraySorter() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.ArraySorter
- arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
- arrayTransMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- ArrayUtil - Class in gov.nih.mipav.util
-
A class containing Array-related helper methods.
- ArrayUtil() - Constructor for class gov.nih.mipav.util.ArrayUtil
- ArrayUtilsFindInvalidIndex() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- ArrayUtilsIsArrayValid() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- Arrow(boolean, int, int) - Constructor for class gov.nih.mipav.model.structures.TableSorter.Arrow
-
Creates a new Arrow object.
- Arrow(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, float, float) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._GenerateMesh
- Arrow(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, float, float) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.Shapes
- Arrows - Static variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
- arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- arrythmiaRejectionRatio - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- arsub(double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Accepts two arrays and subtracts each element in the second array b from the element in the first array a and returns the solution c
- ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Value which indicates a voxel that is part of the arterial vasculature tree.
- ARTERIAL_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Value which indicates a voxel that is part of the arterial vasculature tree.
- artist - Variable in class gov.nih.mipav.model.file.FileSVS
-
DOCUMENT ME!
- artist - Variable in class gov.nih.mipav.model.file.FileTiff
-
DOCUMENT ME!
- ARTIST - Static variable in class gov.nih.mipav.model.file.FileSVS
-
DOCUMENT ME!
- ARTIST - Static variable in class gov.nih.mipav.model.file.FileTiff
-
DOCUMENT ME!
- Arw - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
-
Sony camera raw.
- arydiv(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Returns the complex number resulting from the division of four arrays, representing two complex numbers.
- AS - Enum constant in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR
- asag_mu_nmf() - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ASAG_MU_NMF - Static variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- ASCENDING - Static variable in class gov.nih.mipav.model.structures.TableSorter
-
DOCUMENT ME!
- ASCII - Enum constant in enum gov.nih.mipav.model.file.FileSVS.Type
-
7 bit ASCII
- ASCII - Enum constant in enum gov.nih.mipav.model.file.FileTiff.Type
-
7 bit ASCII
- ASCII - Static variable in class gov.nih.mipav.model.file.FileInterfile
-
DOCUMENT ME!
- ASCII - Static variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- ASCII - Static variable in class gov.nih.mipav.model.file.FileSTK
-
DOCUMENT ME!
- ASCII - Variable in class gov.nih.mipav.model.file.MetadataExtractor.Charsets
- asciiFormat - Variable in class gov.nih.mipav.model.file.FileMetaImage
- asciiText - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- asciiTextArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
- asComponent() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
- asComponent() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.JPlotterCanvas
-
Implicit cast of this canvas to a class extending
Component. - aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
- aset - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
1D integer array of length param containing a code which indicates whether an unknown is active or not aset[i] = 0 when a[i] is free = +1 when a[i] == bl[i] = -1 when a[i] == bu[i].
- Asf - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
- ASF2PTS(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
-
Converts AAM-API shape files (.asf) to the ISBE .pts format.
- asi - Variable in class gov.nih.mipav.model.structures.Voro.wall_cone
- asi - Variable in class gov.nih.mipav.model.structures.Voro.wall_cylinder_inv
- asi - Variable in class gov.nih.mipav.model.structures.Voro.wall_cylinder
- asin() - Method in class gov.nih.mipav.util.DoubleDouble
-
For all -1 invalid input: '<' x invalid input: '<' 1, arcsin(x) = x + x**3/(2*3) + (1 * 3 * x**5)/(2 * 4 * 5) + (1 * 3 * 5 * x**7)/(2 * 4 * 6 * 7) + ...
- asinh(double) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
- aSlice - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Which arbitray clipping slice is currently displayed.
- asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture
-
If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
- asm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
If true calculate angular second moment Sum over i,j of Probability(i,j) * Probability(i,j).
- asm - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
DOCUMENT ME!
- asm - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
DOCUMENT ME!
- ASM_2D_example() - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_align_data_inverse2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_align_data2D(double[][], AlgorithmASM.TData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_ApplyModel2D(ModelImage, AlgorithmASM.TData, AlgorithmASM.SData, AlgorithmASM.AppData[], AlgorithmASM.Options) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_GetContourNormals2D(double[][], int[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_getProfileAndDerivatives2D(ModelImage, double[][], double[][], int, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_MakeAppearanceModel2D(AlgorithmASM.ASMData[], AlgorithmASM.Options, AlgorithmASM.AppData[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- ASM_MakeShapeModel2D(AlgorithmASM.ASMData[], AlgorithmASM.SData) - Method in class gov.nih.mipav.model.algorithms.AlgorithmASM
- asmCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
DOCUMENT ME!
- asmCheckBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
DOCUMENT ME!
- ASMData() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmASM.ASMData
- ASONJ7(double, double, double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- asOpenGL - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
-
hardware OpenGL synthesize, currently disabled.
- aspect_ratio - Enum constant in enum gov.nih.mipav.model.file.charls.spiff_resolution_units
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
- aspectRatio - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
- AspectRatio() - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Geometry.Triangle
- ASPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- ASQUC7(double[], double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- assemble_system_dirichlet(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
- assemble_system_mixed(double, double, int, double[][], double[], double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.ConjugateGradientTest
- assert_almost_equal(double[][], double[][], int, String, String) - Method in class gov.nih.mipav.model.algorithms.filters.ChirpZTransform
- AssertLossFunctionIsValid(CeresSolver.LossFunction, double, String) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- assess(double[], int[], int, double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
- assign(byte) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Assignment operator (double).
- assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
-
Assignment operator (double).
- assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Assignment operator.
- assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
- assign(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
- assign(double[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Assignment operator.
- assign(double[][]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
-
Assignment operator
- assign(CAAMLowerBounds) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds
-
Assign operator.
- assign(CAAMMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh
-
Assignment operator.
- assign(CAAMModel) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
-
Assignment operator.
- assign(CAAMOptState) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState
-
Assignment operator
- assign(CAAMPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint
-
Assignment operator
- assign(CAAMPointInfo) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo
-
Assignment operator.
- assign(CAAMReferenceFrame) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame
-
Assignment operator.
- assign(CAAMReferenceFrame.sScanLinePart) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame.sScanLinePart
- assign(CAAMShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Assignment operator (CAAMShape).
- assign(CAAMShapeCollection) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection
-
Assignment operator
- assign(CAAMTriangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
-
Assignment operator
- assign(CDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
-
Assignment operator (CDMatrix).
- assign(CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Assignment operator.
- assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
-
Assignment operator (CVisDMatrix).
- assign(CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix
- assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Assignment operator (CAAMShape).
- assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Assignment operator.
- assign(CVisDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDVector
- assign(CVisRect) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
- assign(CVisRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- assign(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- assign(POINT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.POINT
- assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.Point3
- assign(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- assign(SIZE) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.SIZE
- assign(Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- assign(Face) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
- assign(Link) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Link
- assign(Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Point3
- assign(JDialogProstateSegmentationRegBSpline3D.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D.PolarPoint
- assign(JDialogProstateSegmentationRegBSpline3DFast.PolarPoint) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast.PolarPoint
- assign_eig_ori(SIFT3D.Image, SIFT3D.Cvec, double, SIFT3D.Mat_rm, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- assign_orientation_thresh(SIFT3D.Image, SIFT3D.Cvec, double, double, SIFT3D.Mat_rm) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- assign_orientations(SIFT3D.SIFT3DC, SIFT3D.Keypoint_store) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- assignCalendar(Calendar, Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Assign source Calendar to target calendar.
- assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2
-
Assign values to the 1-pixel-thick image border.
- assignDirichletImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3
-
Assign values to the 1-voxel-thick image border.
- assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2
-
Assign values to the 1-pixel-thick borders that surround unmasked regions.
- assignDirichletMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3
-
Assign values to the 1-voxel-thick borders that surround unmasked regions.
- assigned - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.FrontEdge
- assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2
-
Assign values to the 1-pixel-thick image border.
- assignNeumannImageBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3
-
Assign values to the 1-voxel-thick image border.
- assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter2
-
Assign values to the 1-pixel-thick borders that surround unmasked regions.
- assignNeumannMaskBorder() - Method in class gov.nih.mipav.model.algorithms.levelset.LsePdeFilter3
-
Assign values to the 1-voxel-thick borders that surround unmasked regions.
- assignTextons(int[][], double[][][][], double[][]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- AssignVertices(ComputationalGeometry.Node[]) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MarchingSquares
- associateAC - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Associate accept object.
- associateRJ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Associate reject object.
- associateRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Associate request object.
- asSoftware - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
-
software synthesize
- asString() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase
-
Returns a String representation of this pixel at its current position.
- assume_full_rank_ete_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
- assumed_blur - Variable in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
- assumed_blur - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
- assumed_blurText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
- asTransposed() - Method in class gov.nih.mipav.model.file.jxlatte.Dimension
- ASYMMETRIC - Enum constant in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.SYMMETRY
- asymmetryIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
- asymmetryIndexDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
- aSyncSubItem - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation
-
DOCUMENT ME!
- AT - Enum constant in enum gov.nih.mipav.model.file.FileDicomTagInfo.VR
- at_plus_a(int, int, int[], int[], int[], int[][], int[][]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
- AtA - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- atan() - Method in class gov.nih.mipav.util.DoubleDouble
-
For -1 invalid input: '<' x invalid input: '<' 1, arctan(x) = x - x**3/3 + x**5/5 - x**7/7 + ...
- atan2(DoubleDouble) - Method in class gov.nih.mipav.util.DoubleDouble
-
The atan of this(the imaginary y component) divided by the real component x Value will range from -PI to PI.
- AtAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- atEnd() - Method in class gov.nih.mipav.model.file.jxlatte.Bitreader
- atEnd() - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- atEnd() - Method in class gov.nih.mipav.model.file.jxlatte.JXLDecoder
- aText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- aText - Variable in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
- aText - Variable in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
-
DOCUMENT ME!
- AtF - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- AtFP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- ATLAS_AC_TO_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach coordinates - anterior.
- ATLAS_AC_TO_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach coordinates - inferior.
- ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ATLAS_AC_TO_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach coordinates - lateral.
- ATLAS_AC_TO_PC - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
AC to PC dimension.
- ATLAS_AC_TO_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach coordinates - superior.
- ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- ATLAS_AC_TO_TOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ATLAS_BBOX_ANT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach view clipping box - anterior.
- ATLAS_BBOX_INF - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach view clipping box - inferior.
- ATLAS_BBOX_INF_NEW - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach view clipping box - inferior new. 3/06/96: extra 10 mm for cerebellum .
- ATLAS_BBOX_LAT - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach view clipping box - lateral.
- ATLAS_BBOX_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach view clipping box - posterior.
- ATLAS_BBOX_SUP - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach view clipping box - superior.
- ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- ATLAS_BOT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ATLAS_COLLECTION - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
- ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- ATLAS_FRONT_TO_AC - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- ATLAS_PC_TO_BACK - Static variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- ATLAS_PC_TO_POS - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
Dimensions used for Talairach coordinates - posterior.
- atlasBasedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
-
atlas image:
- atlasImage - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
- atLastPos - Variable in class gov.nih.mipav.view.ScrollCorrector
-
DOCUMENT ME!
- atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
- atof(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
- atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
- atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
- atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- atof(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
- atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM
- atoi(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Linear
- atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm
- atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_predict
- atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- atoi(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train
- atol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
- attach(Socket) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_Socket
-
Attaches this DICOMSocket to a JAVA socket.
- attachChildTagTables(FileDicomTagTable[]) - Method in class gov.nih.mipav.model.file.FileDicomTagTable
-
Sets the list of tag tables which point to this as their reference tag table.
- attachedImages - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
-
Text are for displaying the attached images
- attachFileInfo(FileInfoMGH, ModelImage) - Method in class gov.nih.mipav.model.file.FileMGH
-
DOCUMENT ME!
- attachmentName - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
-
Name of the image being attached.
- attachSurface(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
Attach the generated surface to an image.
- ATTDelaunay(double[], double[], int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
- attemptLoadFromPackage(String, String) - Static method in class gov.nih.mipav.model.scripting.ScriptableActionLoader
-
Trys to load a action's class, searching in a specific package.
- attenuation - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
- attenuationAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation
-
The attenuation algorithm.
- attenuationBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBoundaryAttenuation
-
The attenuated VOI mask buffer.
- attenuationCorrection - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- ATTR_DIM_ALIGNMENT - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_DIM_DIRECTION_COSINES - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_DIM_LENGTH - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_DIM_SPACETYPE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_DIM_START - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_DIM_STEP - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_DIM_UNITS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_IMAGE_DIM_ORDER - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_IMAGE_VALID_RANGE - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_INFO_SLICE_THICKNESS - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- ATTR_INFO_STUDY_MODALITY - Static variable in class gov.nih.mipav.model.file.FileMincHDF
- attribStr - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay
-
attribute string (for image attributes).
- atv(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- ATVMFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
- Aty - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
- AUC - Enum constant in enum gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
- AUC_IGNORE_TIES - Enum constant in enum gov.nih.mipav.model.algorithms.StochasticForests.SplitRule
- aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- aupkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- author - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- author - Variable in class gov.nih.mipav.model.file.FileInfoFits
- auto_calculate_stride - Variable in class gov.nih.mipav.model.file.charls
- AUTO_POINT - Static variable in class gov.nih.mipav.view.dialogs.JDialogPaintVasculature
-
The mode where paint grow seed points are automatically determined and chosen by the user.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
Calculate the rotation matrix when the auto camera caputuring the images.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter
-
Override the parent autoCapture method to capture MIP image volume.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Overrides the parent autoCapture method.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Overrides the parent autoCapture method.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer
-
Override the parent autoCapture method to capture MIP image volume.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererRayCast
-
Override the parent autoCapture method to capture MIP image volume.
- autoCapture() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRendererShearWarp
-
Override the parent autoCapture method to capture MIP image volume.
- autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- autoCenterFrequency - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- autoCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
- autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
- autoConfigVOIsNumbers() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
After user manually draw the three VOIs on each axial, sagittal, coronal image, the drawn VOIs slices number is auto configured to appear in the dialog GUI interface.
- autoContrast - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
- AutoCorrelation(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Calculates the autocorrelation of the vector with a given lag (default lag is 1).
- AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
- AutoDiffCostFunction(CostFunctor, int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.AutoDiffCostFunction
- autofillButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
-
DOCUMENT ME!
- autofillRequiredFields() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveDicom
-
Autofill the dicom required tags to loosely fullfill the dicom standard.
- autoLabel - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Automatically generate the label, unless it is set explicitly:
- autoLatticeGenerationOutput - Static variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
- autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- autoManualPrescan - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- automatic - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
- automatic - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
- AUTOMATIC_ERROR_REPORTING - Enum constant in enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
- automaticCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
- autoRun() - Method in interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
-
Causes the FlyPathBehavior to fly down the current path from start to finish and back again.
- autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior
-
One round trip path walk through.
- autoRun() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
- autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM
-
One round trip path walk through.
- autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender
- autoRun() - Method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
- autoRunButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
Auto Run Button.
- autosaveMask() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
- autoSequence - Variable in class gov.nih.mipav.model.file.FileNRRD
-
True if data file:
[ ] encountered If true, autosequence using integer format specification varied according to , , and . - autoShrinkDomain - Variable in class gov.nih.mipav.view.ViewJFrameGraph
- autoShrinkDomainCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph
- autoShrinkRange - Variable in class gov.nih.mipav.view.ViewJFrameGraph
-
DOCUMENT ME!
- autoShrinkRangeCheckbox - Variable in class gov.nih.mipav.view.ViewJFrameGraph
-
DOCUMENT ME!
- autoStartCBREngine - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat
-
DOCUMENT ME!
- autoThreshold - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
If true determines the threshold by histogram analysis.
- autoThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji
-
If true, ignore srcThreshold input and calculate best value
- autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
-
If true, ignore srcThreshold input and calculate best value
- autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction
-
DOCUMENT ME!
- autoThreshold - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
-
DOCUMENT ME!
- autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction
-
DOCUMENT ME!
- autoThresholdCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
-
DOCUMENT ME!
- autoXmtFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
282 Auto Center Frequency (0.1 Hz).
- autoXmtGain - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
286 Auto Transmit Gain (0.1 dB).
- aux_file - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze
-
DOCUMENT ME!
- aux_file - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
-
auxiliary file
- aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText
-
DOCUMENT ME!
- aux_file - Variable in class gov.nih.mipav.model.file.FileInfoSPM
-
DOCUMENT ME!
- Aux1Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- Aux2Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- Aux3Tmr - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- auxdata - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed.RbtElt
- auxDCT2(float[][], float[][], jxlatte.Point, jxlatte.Point, int) - Method in class gov.nih.mipav.model.file.jxlatte.PassGroup
- auxTechnique - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.LightSourceRef
- av(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- av2(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- av3(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- av4(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- av5(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- av6(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- available() - Method in class gov.nih.mipav.model.file.jxlatte.PushbackInputStream
- available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialByteArrayReader
- available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.SequentialReader
-
Returns an estimate of the number of bytes that can be read (or skipped over) from this
MetadataExtractor.SequentialReaderwithout blocking by the next invocation of a method for this input stream. - available() - Method in class gov.nih.mipav.model.file.MetadataExtractor.StreamReader
- availableBits() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
- availableBits() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
- availableImageList - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptModel
-
DOCUMENT ME!
- availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
-
available images to concat...the ones that are open in mipav
- availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
-
available images to concat...the ones that are open in mipav
- availableImagesToConcat - Variable in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
-
available images to concat...the ones that are open in mipav
- aVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- Aval - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexRegOptions
-
invalid input: '<' Regularization method for S.
- aveH - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- average - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
DOCUMENT ME!
- average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
Radio button selected if inserted slices are a weighted average of surrounding slices.
- average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- average - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
DOCUMENT ME!
- AVERAGE - Enum constant in enum gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath.Operator
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.Algorithm4DImageCalculator
-
average
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
DOCUMENT ME!
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice
-
Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
- AVERAGE - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
-
Average slice type - the inserted slice is set equal to the mean of the 2 surrounding slices.
- AVERAGE_DECON - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution
-
Average deconvolution is based on the arithmetical mean of the two estimates from A and B separately
- AVERAGE_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- AVERAGE_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
Average volume type - the inserted volume is set equal to the mean of the 2 surrounding volumes.
- averageB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
DOCUMENT ME!
- averagedImageCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
-
DOCUMENT ME!
- averageDistanceMaps - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIShapeInterpolation
-
distance maps
- averageG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
DOCUMENT ME!
- averageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
- averageImageRButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
DOCUMENT ME!
- averageIntensities - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPointArea
-
DOCUMENT ME!
- averageIntensities - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea
-
DOCUMENT ME!
- averageMode - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
DOCUMENT ME!
- averageMode - Variable in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI
-
DOCUMENT ME!
- averagePt - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Stores the average of the contour of a VOI.
- averageR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
DOCUMENT ME!
- averageSAR - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- averageSAR - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- averagesNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- averagesNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- AverageVariance(AlgorithmGaussianMixtureModelEM.ClassSig, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM
- averagingNumber - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSliceAveraging
-
DOCUMENT ME!
- averagingNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging
-
DOCUMENT ME!
- AVGERAGE_WITH_STDEV - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
- avgInten - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
- avgInten - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
- avgIntenB - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
- avgIntenB - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
- avgIntenG - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
- avgIntenG - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
- avgIntenR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D.ContourStats
- avgIntenR - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
- avgIntensity - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
-
string to test for when checking on statistics to calculate.
- avgIntensity - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
average intensities in VOI
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt.ShapeFactor
- avgIntensity - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM.ShapeFactor
- avgIntensityB - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
average intensities in VOI
- avgIntensityG - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
average intensities in VOI
- avgIntensityR - Variable in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
average intensities in VOI
- avgJ0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
- avgPix(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
This method calculates the average pixel value based on the four neighbors (N, S, E, W).
- avgPix(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.PlaneRenderProstate
-
This method calculates the average pixel value based on the four neighbors (N, S, E, W).
- avgVolIndex - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
Philips puts in one volume as the average of all the DWIs.
- Avi - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
- AVI - Static variable in class gov.nih.mipav.model.file.FileUtility
-
AVI file type.
- AVI - Static variable in class gov.nih.mipav.view.ViewImageFileFilter
-
Filter avi files (*.avi).
- AVI_COMPRESSION - Static variable in class gov.nih.mipav.model.scripting.actions.ActionSaveBase
-
Label for the avi compression parameter.
- AVI_MODE - Static variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
AVI is recording.
- AVICompression - Variable in class gov.nih.mipav.model.file.FileWriteOptions
-
DOCUMENT ME!
- AVIF_HASINDEX - Variable in class gov.nih.mipav.model.file.FileAvi
- AVIF_ISINTERLEAVED - Variable in class gov.nih.mipav.model.file.FileAvi
-
DOCUMENT ME!
- AVIF_MUSTUSEINDEX - Variable in class gov.nih.mipav.model.file.FileAvi
-
globals needed for read - set in readHeader, used in readImage.
- aviField - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI
-
DOCUMENT ME!
- aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse
-
DOCUMENT ME!
- aviFile - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse
-
DOCUMENT ME!
- aviPlayButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
AVI Recorder Play button.
- aviRecordButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
AVI Recorder record button.
- aviStopButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
AVI Recorder Stop button.
- avsimp(int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- avsvd(int, int, double[], double[]) - Method in class gov.nih.mipav.model.structures.jama.SparseEigenvalue
- awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior
-
Awt wake up condition .
- awtCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer
-
Awt wake up condition .
- AWTImageSourceStream(int, int, int, Image[]) - Constructor for class gov.nih.mipav.view.renderer.flythroughview.MovieMaker.AWTImageSourceStream
-
Creates a new AWTImageSourceStream object.
- ax - Variable in class gov.nih.mipav.model.structures.Voro
- ax - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- ax - Variable in class gov.nih.mipav.model.structures.Voro.container_base
-
The minimum x coordinate of the container.
- ax - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
The minimum x coordinate of the container.
- Ax - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
- axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
- axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysRenderer
- axes - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
- axes - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- axes - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- axesRatio - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- axesRatio - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- axesRatioLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- axesRatioText - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
-
axis orientation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
axis oritentation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
axis orietation.
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
Axial image type
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
Axial image type
- Axial - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
- AXIAL - Enum constant in enum gov.nih.mipav.model.file.FileInfoBase.ImageOrientation
- AXIAL - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
Axial orientation.
- AXIAL_A - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
DOCUMENT ME!
- AXIAL_AB - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
DOCUMENT ME!
- AXIAL_B - Static variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
DOCUMENT ME!
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
- axial_index - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
- AXIAL_INDEX - Static variable in class gov.nih.mipav.view.dialogs.JDialogReorient
- AXIAL_INDEX - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ImageReorientation
- AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
along the major axis (+).
- AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
(3D only).
- AXIAL_KERNEL - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
(3D only).
- axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- axialList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- axialMaskList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- axialOrientation - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Indicates that image orientation is unknown type or not.
- AxialVOIs - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Axial VOI instance
- axioCamAnalogGainEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamBlackReference - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamColorModel - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamDelayTime - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamEnhanceColor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamMicroScanning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamNIRMode - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamResolution - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamSaturation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamSelector - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamShutterControl - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamShutterSignal - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- axioCamType - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- AXION - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- AXION1(int[], int[], double[], int, int, int[], int[], int[], double[], double, boolean[], double[], int[], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- axis - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEllipsoidFit
-
DOCUMENT ME!
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- axis - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- AXIS_DEC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender
-
DOCUMENT ME!
- AXIS_INC - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender
-
Render selected planes in order of increasing/decreasing coordinate.
- AXIS_ORIENTATIONS - Static variable in class gov.nih.mipav.model.scripting.actions.ActionChangeOrientations
-
The label to use for the parameter indicating the new axis orientations
- AXIS_UNDEFINED - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender
-
Used to represent undefined AXIS_*.
- AXIS_X - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender
-
Render volume YZ planes in order of increasing/decreasing X.
- AXIS_Y - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender
-
Render volume ZX planes in order of increasing/decreasing Y.
- AXIS_Z - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.NodeVolumeTextureRender
-
Render volume XY planes in order of increasing/decreasing Z.
- axisAligned() - Method in class gov.nih.mipav.view.PatientSlice
-
Determines if a slice is axis-aligned, based on the m_kFourCorners[] four corners of the slice in 3D Model space.
- axisAngle - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Value attribute for the roation axis.
- axisAngle - Variable in class gov.nih.mipav.view.renderer.SceneState
-
Save the current.
- axisCount - Variable in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
DOCUMENT ME!
- axisDescription - Static variable in interface gov.nih.mipav.model.structures.VOIStatisticList
-
string to test for when checking on statistics to calculate.
- axisDirA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos
-
DOCUMENT ME!
- axisDirB - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegPatientPos
-
DOCUMENT ME!
- axisFlip - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
- axisFlip - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
- axisLabels - Variable in class gov.nih.mipav.view.ViewJComponentTriImage
-
Labels for the axes:.
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
axis panel.
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
axis region.
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
axis region
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- axisList - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
- axisMaxs - Variable in class gov.nih.mipav.model.file.FileNRRD
-
Maximum axis value.
- axisMins - Variable in class gov.nih.mipav.model.file.FileNRRD
-
Minimum axis value.
- axisOrder - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
- axisOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogReorient
- axisOrient - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
DOCUMENT ME!
- axisOrientation - Variable in class gov.nih.mipav.model.file.FileInfoBase
-
axis orientation used to support image ordering and display for medical images.
- axisOrientation - Static variable in class gov.nih.mipav.model.file.FileInfoMincHDF
-
The axis orientation static types
- axisOrientation - Variable in class gov.nih.mipav.model.file.FileMGH
-
DOCUMENT ME!
- axisOrientation - Variable in class gov.nih.mipav.model.file.FileNIFTI
-
R2L, L2R, A2P, P2A, I2S, and S2I orientations of x, y, and z axes.
- axisOrientation - Variable in class gov.nih.mipav.model.file.FileNRRD
-
For each axis R2L, L2R, A2P, P2A, I2S, or S2I
- axisOrientation - Variable in class gov.nih.mipav.model.file.FileWriteOptions
-
DOCUMENT ME!
- axisOrientation - Variable in class gov.nih.mipav.view.ViewJComponentTriImage
- AxisOrientation(int, String) - Constructor for enum gov.nih.mipav.model.file.FileInfoBase.AxisOrientation
- axisOrientation2 - Variable in class gov.nih.mipav.model.file.FileNIFTI
-
When both qform_code > 0 and sform_code > 0, the axis orientation information corresponding to sform_code > 0 is placed in axisOrientation2
- axisOrientationStr - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
Array of axis orientation strings.
- axisPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
-
DOCUMENT ME!
- axisX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Value attribute for the roation axis.
- axisX - Variable in class gov.nih.mipav.view.renderer.SceneState
-
Save the current.
- axisY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Value attribute for the roation axis.
- axisY - Variable in class gov.nih.mipav.view.renderer.SceneState
-
Save the current.
- axisZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Value attribute for the roation axis.
- axisZ - Variable in class gov.nih.mipav.view.renderer.SceneState
-
Save the current.
- ay - Variable in class gov.nih.mipav.model.structures.Voro
- ay - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- ay - Variable in class gov.nih.mipav.model.structures.Voro.container_base
-
The minimum y coordinate of the container.
- ay - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
The minimum y coordinate of the container.
- az - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Svec
- az - Variable in class gov.nih.mipav.model.structures.Voro
- az - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- az - Variable in class gov.nih.mipav.model.structures.Voro.container_base
-
The minimum z coordinate of the container.
- az - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
The minimum z coordinate of the container.
- AZETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- azetac - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- AZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- azimuth - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- azimuthArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
B
- / = 1 + B1 * ((f/f0)**2/3) where B1 = ((2**-1/6)/K1) - 1 For spheres of varying radii the formula is modified to *(Nv**(1/3)) = K1*[ 1 + B1 * (f/f0)**2/3] - (1 - exp(-cv * f)) where cv is the coefficient of variation of the sphere size distribution The reference is "Nearest neighbor distances in uniform-random poly-dispersed microstructures" by A. Tewari and A. M. Gokhale, Materials Science and Engineering A 396 (2005), pp. 22-27. The equation for varying radii is good for sphere volume fractions ranging from 0.0 to 0.25. - Search tag in class gov.nih.mipav.model.algorithms.AlgorithmSphereGeneration
- Section
- b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
-
DOCUMENT ME!
- b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
generated with randomly scrambled blocks of pixels having a linear correlation coefficient less than that of the actual image.
- b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGraphBasedSegmentation.edge
- b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.tuple2i
- b - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- b - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.LinearLeastSquaresProblem
- b - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.SchurEliminatorTest
- b - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Input parameter
- b - Variable in class gov.nih.mipav.model.algorithms.ConjugateGradient
- b - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
- b - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
- b - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtility
-
DOCUMENT ME!
- b - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
-
DOCUMENT ME!
- b - Variable in class gov.nih.mipav.model.algorithms.Gamma
- b - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric
-
Input parameter
- b - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
- b - Variable in class gov.nih.mipav.model.algorithms.PreconditionedConjugateGradient
- b - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_edge
- b - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- b - Variable in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
- b - Variable in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
- b - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
- b - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
- b - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_FaceAux
- b - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.LoadPly_VertAux
- b - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
- b() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- b(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
- b(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- b(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- B - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Square
- B - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
- B() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRGBA
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ArctanLoss
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.HuberLoss
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.NormalPrior
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ImplicitSchurComplementTest
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.IterativeSchurComplementSolverTest
- b_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.LinearCostFunction2
- b_ - Variable in class gov.nih.mipav.model.file.charls.regular_mode_context
- B_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- b_asDouble() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- b_asDouble() - Method in interface gov.nih.mipav.model.algorithms.ContourPlot.PixelBase
-
Returns the blue value of this pixel at its current position.
- b_counts_int - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
- b_disp - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
- b_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
- b_normalized(int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
- b_normalized(int) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Pixel
- b_s_info - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
- b_s_info - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
- b_s_open - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
- b_s_open - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_sarray_control
- B_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
- B_Y_OFF - Variable in class gov.nih.mipav.model.file.libjpeg
- b0CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- B0extraction(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
-
Extracts the reference sub-volume from the input 4D image.
- B0MatrixFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
- b0MatrixFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
-
File name for the B0 to T2 transformation matrix (needed to populate the next panel in the DTIPipeline)
- b0ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- b0ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- b0toStructMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- b0toStructMatrix - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
-
The transformation matrix describing the transformation from registering B0 to T2 image.
- B0toStructTransPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
- b1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- b1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- b1 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b1 - Variable in class gov.nih.mipav.model.file.FileSVS.ModModREADInputStream
- b1 - Variable in class gov.nih.mipav.model.file.FileTiff.ModModREADInputStream
- B1 - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- b1CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- B1COF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- B1Combo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
- b1Field - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
- b1ImageIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- b1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
- b1ImageIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
- b1ImageName - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- b1ResultData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- b1ResultStack - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- b1ResultWindow - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- b2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- b2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- b2 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b2CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- B2d - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
- b3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- b3 - Variable in class gov.nih.mipav.model.file.FileDicom
- b3 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b3CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- B3d - Variable in class gov.nih.mipav.model.structures.jama.SuperLU.NRformat_loc3d
- b4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b4 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b4CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- b5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b5 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b5CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- b6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b6 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b6CheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- b7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- b7 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- b8 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Integer variable used to read/write in data so that they don't need to be allocated with each read/write.
- back - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
DOCUMENT ME!
- back - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
DOCUMENT ME!
- back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.IDList
- back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Edge
- back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Neighbor
- back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.NEList
- back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
- back - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Vertices
- back(IDList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- back(LODMesh.Edge) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- back(LODMesh.Neighbor) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- back(LODMesh.NEList) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- back(LODMesh.Triangle) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- back(LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- BACK - Static variable in class gov.nih.mipav.model.structures.VOI
-
Static Variables for VOI and VOI Contour selection.
- back_transform(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform
- backBottomLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backBottomLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backBottomRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backBottomRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- BackfaceCull - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.SurfaceState
- backForthButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- backForthButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
DOCUMENT ME!
- background - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.Text
- background - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
The background node for the canvas.
- background - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
- Background(double[][], double) - Constructor for class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples.Background
- BACKGROUND - Static variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- background1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
The minimum values that are considered as data values.
- background1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- background2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- background2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- backgroundB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET
-
DOCUMENT ME!
- backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- backgroundButton - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
-
DOCUMENT ME!
- backgroundButton - Variable in class gov.nih.mipav.view.ViewJFrameGraph
-
DOCUMENT ME!
- backgroundColor - Variable in class gov.nih.mipav.model.structures.VOIText
-
The color used to draw behind the main text (so that the text will stand out)
- backgroundColor - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase
-
The default background color of JPanels (look and feel dependent).
- backgroundColor - Variable in class gov.nih.mipav.view.ViewJComponentGraph
-
DOCUMENT ME!
- backgroundColor - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase
-
The default background color of JPanels (look and feel dependent).
- BackgroundColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- backgroundColorButton - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation
-
button to bring up the background color chooser.
- backgroundDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- backgroundDistanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
Euclidian distance map of the background.
- backgroundDistanceMap(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
Generates a Euclidian distance map of the background.
- backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRETAcceptorPhotobleach
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
-
The index of a rerquired noise background VOI.
- backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- backgroundIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
-
DOCUMENT ME!
- backgroundIndex2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- backgroundLabel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
-
DOCUMENT ME!
- backgroundPanel - Variable in class gov.nih.mipav.view.ViewJFrameGraph
-
DOCUMENT ME!
- backgroundPresent - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- backgroundsDim - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- backgroundVariance - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSingleMRIImageSNR
-
DOCUMENT ME!
- backing_store_info() - Constructor for class gov.nih.mipav.model.file.libjpeg.backing_store_info
- backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
-
DOCUMENT ME!
- backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
DOCUMENT ME!
- backInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
DOCUMENT ME!
- BackProject(CDVector, CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
-
Back projects a set of PCA model parameters into the original space.
- Backpropagation - Class in gov.nih.mipav.model.algorithms
-
MIT License Copyright (c) 2016 Jason Wu Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
- Backpropagation() - Constructor for class gov.nih.mipav.model.algorithms.Backpropagation
- Backpropagation.Connection - Class in gov.nih.mipav.model.algorithms
- Backpropagation.MainFrame - Class in gov.nih.mipav.model.algorithms
- Backpropagation.MainFrame.GPanel - Class in gov.nih.mipav.model.algorithms
- Backpropagation.NeuralNetwork - Class in gov.nih.mipav.model.algorithms
- Backpropagation.Neuron - Class in gov.nih.mipav.model.algorithms
- backSpaceButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- BackSubstitute(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- BackSubstitute(CeresSolver.BlockSparseMatrix, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
- BackSubstitute(CeresSolver.BlockSparseMatrix, double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminatorBase
- backTopLeft - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backTopLeftIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backTopRight - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backTopRightIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- backupColors() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceAttributes
-
Stores the per-vertex colors when the material is set -- used to restore per-vertex color from the AdvancedMaterials dialog.
- backupData(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM
-
Backup ModelImage data.
- backupImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Called by the TextureSculptor or VolumeSculptor objects.
- backupImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor
-
Called by the TextureSculptor or VolumeSculptor objects.
- backupImage(ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor
-
Called by the TextureSculptor or VolumeSculptor objects.
- backupMosaic() - Method in class gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic
-
backupMosaic -- Backs up the reference invalid input: '&' tile polygon shapes, borders, ModelImages, and TransformGroups before the registration is called, so that registration can be undone by the user:
- backupPaintBitmap() - Method in class gov.nih.mipav.view.ViewJComponentEditImage
-
Backs up the paintBitmap into the paintBitmapBU variable.
- backupSculptImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Sculptor_WM
-
Backup the sculpt image.
- backupSecondGaussianRoutine() - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- backupZDim - Variable in class gov.nih.mipav.model.file.FileZVI
- BACKWARD - Static variable in class gov.nih.mipav.model.structures.VOI
-
Static Variables for VOI and VOI Contour selection.
- bad_block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
- BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileSVS
- BAD_FAX_LINES - Static variable in class gov.nih.mipav.model.file.FileTiff
- BAD_TEST_TERM_EXAMPLE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
- bad_variable - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TestTerm
- badBGLengths() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
- badBlockHeader() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
- badc1_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
- badc1_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
- badc2_dlatb4 - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
- badc2_zlatb4 - Variable in class gov.nih.mipav.model.structures.jama.ComplexLinearEquations
- badFaxLines - Variable in class gov.nih.mipav.model.file.FileSVS
- badFaxLines - Variable in class gov.nih.mipav.model.file.FileTiff
- BadJacobianCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadJacobianCostFunction
- BadLocalParameterization() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
- BadResidualCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BadResidualCostFunction
- BadTestTerm(int, int[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BadTestTerm
- bakeCbrtBias() - Method in class gov.nih.mipav.model.file.jxlatte.OpsinInverseMatrix
- bakeDequantizedCoeffs() - Method in class gov.nih.mipav.model.file.jxlatte.HFCoefficients
- bAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBRISK
-
DOCUMENT ME!
- BallPivoting - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
- BallPivoting(TriMesh, float, float, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
- BallPivotingPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
- BallPivotingPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
- BAND_DQ - Variable in class gov.nih.mipav.model.algorithms.CVODES
- BAND_USER - Variable in class gov.nih.mipav.model.algorithms.CVODES
- bandButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- bandno - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_band_t
- bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
DOCUMENT ME!
- bandPass - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
DOCUMENT ME!
- BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
DOCUMENT ME!
- BANDPASS - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
- BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
DOCUMENT ME!
- BANDPASS - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- bands - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_resolution_t
- BANDS - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.AAMdef
-
define the number of bands used in the AAM model. 1 for single intensity channel of MRI prostate grayscale image. 3 for the RGB channels.
- bandSpacing - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
- bandSpacingCounter - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
DOCUMENT ME!
- bandStop - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
DOCUMENT ME!
- BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
DOCUMENT ME!
- BANDSTOP - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
- BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
DOCUMENT ME!
- BANDSTOP - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- bandtypeField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
-
textfields
- bandwidth(int, int, int[], int[], int[], int[]) - Method in class gov.nih.mipav.model.structures.Triangulation
- bandwidth_frequency - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
- bar - Variable in class gov.nih.mipav.view.dialogs.JDialogBase
-
JMenuBar for loading/saving defaults
- BARD - Variable in class gov.nih.mipav.model.algorithms.Lmmin
- BARD - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BARD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BARD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
- BardFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BardFunction
- baricenter - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BallPivoting
- barMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
- barMarker - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
- BarMeter - Class in gov.nih.mipav.view
-
BarMeter presents a vertical, block-style meter to present numerical information as a fraction of a number of divisions (eg, progress or resource consumption).
- BarMeter() - Constructor for class gov.nih.mipav.view.BarMeter
-
Constructs a barmeter with a background color of black.
- barPanel - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
-
Panel containing all the progress bars as well as relevent text labels
- bary_eps - Variable in class gov.nih.mipav.model.algorithms.SIFT3D
- BarycentricGradientPaint(double, double, double, double, double, double, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
-
Creates a new
ContourPlot.BarycentricGradientPaintobject with specified triangle vertices and vertex colors. - BarycentricGradientPaint(float[], float[], Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
-
Creates a new
ContourPlot.BarycentricGradientPaintobject with specified triangle vertices and vertex colors. - BarycentricGradientPaint(float, float, float, float, float, float, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
-
Creates a new
ContourPlot.BarycentricGradientPaintobject with specified triangle vertices and vertex colors. - BarycentricGradientPaint(Point2D, Point2D, Point2D, Color, Color, Color) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaint
-
Creates a new
ContourPlot.BarycentricGradientPaintobject with specified triangle vertices and vertex colors. - BarycentricGradientPaintContext(Point2D.Float, Point2D.Float, Point2D.Float, Color, Color, Color, AffineTransform, boolean) - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- base - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
- base - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.DiscreteWavelet
- base - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- base - Variable in class gov.nih.mipav.model.structures.jama.GeneralizedEigenvalue
-
DOCUMENT ME!
- base - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
- base_dither_matrix - Variable in class gov.nih.mipav.model.file.libjpeg
- baseAfterNumber - Variable in class gov.nih.mipav.model.file.FileNRRD
-
In autosequencing number between a capital D and the last period used in generating filenames.
- baseBeforeNumber - Variable in class gov.nih.mipav.model.file.FileNRRD
-
In autosequencing number before percentage sign and period used in generating start of autosequenced filename.
- baseBlockSize - Static variable in interface gov.nih.mipav.model.file.BZip2Constants
- baseBuffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegChamfer
-
DOCUMENT ME!
- baseCorrelationB - Variable in class gov.nih.mipav.model.file.jxlatte.LFChannelCorrelation
- baseCorrelationX - Variable in class gov.nih.mipav.model.file.jxlatte.LFChannelCorrelation
- baseFunction - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
- baseFunctions - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.FunctionData
- baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
Image for Y-axis of Histogram
- baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
DOCUMENT ME!
- baseImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
DOCUMENT ME!
- baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch
-
DOCUMENT ME!
- baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer
-
Register match image to base image.
- baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
-
Base image - register match image to base image.
- baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
-
Base image - register match image to base image.
- baseImage - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
-
DOCUMENT ME!
- baseKernels - Static variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan
- baseName - Variable in class gov.nih.mipav.model.file.FileMetaImage
- baseNameforReconstructedSlices - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat
-
DOCUMENT ME!
- baseNumber - Variable in class gov.nih.mipav.model.file.FileNRRD
-
Used if autosequencing.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
-
Limits the number of iterations of Powell's algorithm when registering the original image against the flipped image.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Advanced optimization settings maxIter in the call to ELSUNC will be an integer multiple of baseNumIter.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Advanced optimization settings maxIter in the call to Powell's will be an integer multiple of baseNumIter.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
Limits number of iterations in ELSUNC, LEVENBERG_MARQUARDT, or NL2SOL optimization.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
these numbers hard coded for constructors that don't include them.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
Limits number of iterations in elsunc optimization. maxIter in the call to elsunc will be an integer multiple of baseNumIter
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
these numbers hard coded for constructors that don't include them.
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
Limits number of iterations in Powell optimization. maxIter in the call to Powell's will be an integer multiple of baseNumIter
- baseNumIter - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
- baseScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlCovDet
-
invalid input: '<' index of the first octave.
- baseScale - Variable in class gov.nih.mipav.model.algorithms.Covdet.VlScaleSpaceGeometry
-
invalid input: '<' Index of the last octave subdivision
- baseVOIGradMagSum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOISimplexOpt
-
The sum of the gradient magnitude along the polygon.
- baseVOIGradMagSum - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegVOILandmark
-
DOCUMENT ME!
- BaseWavelet() - Constructor for class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
- basic_example() - Method in class gov.nih.mipav.model.structures.Delaunator
- BasicGrid - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
-
BasicGrid Basic Class abstracting a gridded structure in a 3d space; Usueful for having coherent float to integer conversion in a unique place: Some Notes: - bbox is the real occupation of the box in the space; - siz is the number of cells for each side OBJTYPE: Type of the indexed objects.
- BasicGrid() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
- basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
- basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- basicParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
- basicParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
- basicParametersB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- basicParametersSurface - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
- basicSize - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
- basym(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- batch - Variable in class gov.nih.mipav.model.file.jxlatte.XorShiro
- batch_size - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- batchDistance(Vector<Vector<Double>>, Vector<Vector<Double>>, double[][], int[][], int, int, Vector<Double>, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
- BatchDistInvoker(Vector<Vector<Double>>, Vector<Vector<Double>>, double[][], int[][], int, Vector<Double>, int) - Method in class gov.nih.mipav.model.algorithms.SIFTImageSimilarity
- batchPos - Variable in class gov.nih.mipav.model.file.jxlatte.XorShiro
- batchSize - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.CLFFTPlan.WorkDimensions
- BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
- BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- BayesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
- BayesShrinkThresholdComputation(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- BayesShrinkThresholdComputation(double[], double) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bb_bounds() - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- bbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
- bbox - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.TriMesh
- bbox() - Constructor for class gov.nih.mipav.model.structures.GenericPolygonClipper.bbox
- bButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- bc - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion.kFitting
- BCb - Variable in class gov.nih.mipav.model.file.FileSVS.TIFFYCbCrInputStream
- BCb - Variable in class gov.nih.mipav.model.file.FileTiff.TIFFYCbCrInputStream
- BCFSN - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BCFSNG(int, int[], int[], int[], double[], double[], double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BCFVTF(double[], double[], int[], int[], int[], int[], int, int, double[], double[], double, double[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
If true filter the blue channel.
- bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
the blue channel.
- bChannel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
DOCUMENT ME!
- bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization
-
when true, indicates whether to process the colour channel.
- bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
DOCUMENT ME!
- bChannel - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
the blue channel.
- bcm - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- BCOEF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BCOFC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- bColorListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.bColorListener
- bcorr(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- bd(Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, Vector<Double>, double[], double, double, double, double[], double, double[], int, int, int, int, boolean, int, double, int) - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
- BD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bdAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
-
DOCUMENT ME!
- bdbl - Variable in class gov.nih.mipav.model.algorithms.filters.FFTUtilityEP
- BDF_Q_MAX - Variable in class gov.nih.mipav.model.algorithms.CVODES
- bdl - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
- bdrBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Border buffer number of slices.
- bdrBufferDepth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Border buffer number of slices.
- bdrBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Border buffer number of rows.
- bdrBufferHeight - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Border buffer number of rows.
- bdrBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Border buffer number of columns.
- bdrBufferWidth - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Border buffer number of columns.
- bdtr(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- BDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bdtrc(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- BDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bdtri(int, int, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- BDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- be_shrunk(int, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
- be_shrunk(int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
- be_shrunk(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
- be_shrunk(int, double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
- be_shrunk(int, int, int, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
- beachline_end - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_context_internal
- beachline_start - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_context_internal
- BEALE - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BEALE - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BealeFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BealeFunction
- BEAMSPLITTER_ENTRY_FILTER - Static variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- BEAMSPLITTER_ENTRY_FILTER_SET - Static variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- BEAMSPLITTER_ENTRY_NAME - Static variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- beautifyTime(int) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
- BEByteArrayInputStream - Class in gov.nih.mipav.model.file.rawjp2
-
Big Endian Input Array Stream, works as a replacement for BERandomAccessFile at the input of Jpeg2K decoder.
- BEByteArrayInputStream(byte[]) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
- BEByteArrayInputStream(byte[], int, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayInputStream
- BEByteArrayOutputStream - Class in gov.nih.mipav.model.file.rawjp2
-
Big Endian Output Array Stream, works as a replacement for FileFormatWriter at the output of Jpeg2K encoder.
- BEByteArrayOutputStream() - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream
- BEByteArrayOutputStream(ByteArrayOutputStream, int, int) - Constructor for class gov.nih.mipav.model.file.rawjp2.BEByteArrayOutputStream
- BED - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
- beenVisited(int) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver
- beep() - Static method in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior
-
Sound a beep.
- beep() - Static method in class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM
-
Sound a beep.
- beep() - Static method in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
-
Sound a beep.
- BEFORE - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties
-
Before/After index values for the two displayed spheres, canvases, and display panels:.
- BEFORE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
-
Before/After index values for the two displayed spheres, canvases, and display panels:.
- before_start_of_image - Enum constant in enum gov.nih.mipav.model.file.charls.state
- beforeExecute() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
- beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
-
Make the dimension be the power of two, and zero pad them.
- beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
-
Make the dimension be the power of two, and zero pad them.
- beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
- beforeExecute() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorComposite
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorDRR
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorLighting
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpColorMIP
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityDRR
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpIntensityMIP
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleAll(int, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer
-
This is a callback to be executed before resampleAll is executed.
- beforeResampleSingle() - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.ShearWarpRenderer
-
This is a callback to be executed before resampleSingle is executed.
- beforeThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
- beforeThreadedGenerateData() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
- begin - Variable in class gov.nih.mipav.model.file.FileMincVarElem
-
DOCUMENT ME!
- begin_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.Grid1D
- beginC - Variable in class gov.nih.mipav.model.file.jxlatte.SqueezeParam
- beginC - Variable in class gov.nih.mipav.model.file.jxlatte.TransformInfo
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2
-
The region-growing fast march.
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3
-
The region-growing fast march.
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter
-
The region is grown from the input seeds.
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2
-
The region-growing fast march.
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3
-
The region-growing fast march.
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2
-
The region-growing fast march.
- beginCoarse(int[]) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3
-
The region-growing fast march.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2
-
The signed-distance-transform fast march.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3
-
The signed-distance-transform fast march.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter
-
An annulus is computed about the boundary of the coarse-level segmentation.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2
-
The signed-distance-transform fast march.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3
-
The signed-distance-transform fast march.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2
-
The signed-distance-transform fast march.
- beginDistanceTransform(float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3
-
The signed-distance-transform fast march.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour2
-
The level-set evolution.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegGeodesicActiveContour3
-
The level-set evolution.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegmenter
-
Evolve the signed-distance transform in the annulus constructed previously.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection2
-
The level-set evolution.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegShapeDetection3
-
The level-set evolution.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold2
-
The level-set evolution.
- beginEvolution(float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.levelset.LseSegThreshold3
-
The level-set evolution.
- beginSlice - Variable in class gov.nih.mipav.model.file.FileWriteOptions
-
3D options.
- beginTimePeriod - Variable in class gov.nih.mipav.model.file.FileWriteOptions
-
4D options.
- behaviorBG - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
The BranchGroup to which the arbitrary behaviors are attached and rotate.
- behaviorfix - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior
-
DOCUMENT ME!
- BEHead - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- BELOW - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
- belowThreshold - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- beltrami_coefficient(double[][], int[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.SphericalConformalMap
- bendingMatrix - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- Bennett5CostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.Bennett5CostFunction
- Bennett5Data - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
- Bennett5Observations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
- bernard(double[], int, double) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- BernoulliA(int) - Method in class gov.nih.mipav.util.DoubleDouble
- BernoulliB(int) - Method in class gov.nih.mipav.util.DoubleDouble
- Bessel - Class in gov.nih.mipav.model.algorithms
-
This module computes Bessel functions of complex arguments and a nonnegative order.
- Bessel(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.Bessel
-
Creates a new Bessel object.
- Bessel(int, double, double, double, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel
-
This construtor used for I, J, K, and Y Bessel functions.
- Bessel(int, double, double, double, int, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel
-
This constructor used for H functions of kind 1 and 2.
- Bessel(int, double, double, int, int, double[], double[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Bessel
-
This constructor is used for Ai and Bi Airy functions.
- BESSEL_H - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
Bessel functions of the third kind, Hankel functions.
- BESSEL_H - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
Bessel functions of the third kind, Hankel functions.
- BESSEL_I - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
modified Bessel function of the first kind.
- BESSEL_I - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
modified Bessel function of the first kind.
- BESSEL_J - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
Bessel function of the first kind.
- BESSEL_J - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
Bessel function of the first kind.
- BESSEL_K - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
modified Bessel function of the second kind.
- BESSEL_K - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
modified Bessel function of the second kind.
- BESSEL_Y - Static variable in class gov.nih.mipav.model.algorithms.Bessel
-
Bessel function of the second kind.
- BESSEL_Y - Static variable in class gov.nih.mipav.model.algorithms.BesselEP
-
Bessel function of the second kind.
- BesselEP - Class in gov.nih.mipav.model.algorithms
-
This module computes Bessel functions of complex arguments and a nonnegative order.
- BesselEP(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP
-
Creates a new BesselEP object.
- BesselEP(int, double, double, double, int, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP
-
This constructor used for H functions of kind 1 and 2.
- BesselEP(int, double, double, double, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP
-
This constructor used for I, J, K, and Y Bessel functions.
- BesselEP(int, double, double, int, int, DoubleDouble[], DoubleDouble[], int[], int[]) - Constructor for class gov.nih.mipav.model.algorithms.BesselEP
-
This constructor is used for Ai and Bi Airy functions.
- BesselType - Variable in class gov.nih.mipav.model.algorithms.Bessel
-
DOCUMENT ME!
- BesselType - Variable in class gov.nih.mipav.model.algorithms.BesselEP
-
DOCUMENT ME!
- bessInt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP
- best_csnrs(double) - Method in class gov.nih.mipav.model.algorithms.ImageQuality
- bestDim(int, Point3, Point3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
- bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
DOCUMENT ME!
- bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
DOCUMENT ME!
- bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
DOCUMENT ME!
- bestGuessLevel2 - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
DOCUMENT ME!
- bestImageIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
- bestMap(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- bestMax - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
/**.
- bestMin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
/**.
- bestpg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- bestpg - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- bestSliceIndex - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.MatchSlices
- bestToWorst - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- bestToWorst - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
- bestWeight - Variable in class gov.nih.mipav.model.algorithms.Backpropagation.Connection
- beta - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB
-
invalid input: '<' Total number of entries (= # active nodes)
- beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.ContractingSnake
- beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmNetworkSnake.NetworkSnake
- beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- beta - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- beta - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- beta - Variable in class gov.nih.mipav.model.algorithms.FitLaplace
-
Beta parameter
- beta - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
parameter in the weight function, beta.gt.(-1) if beta.le.(-1), the routine will end with ier[0] = 6.
- beta - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
parameter in the weight function, beta.gt.(-1) if beta.le.(-1), the routine will end with ier[0] = 6.
- beta - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
scalar containing the norm of the orthogonal projection of residuals onto the space spanned by the columns of the Jacobian.
- beta - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
scalar containing the norm of the orthogonal projection of residuals onto the space spanned by the columns of the Jacobian.
- beta - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- beta - Variable in class gov.nih.mipav.model.algorithms.ODE
- beta - Variable in class gov.nih.mipav.model.algorithms.ODEEP
- beta - Variable in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.crpfun
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.depfun
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.dpfun
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.rpfun
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.hppfun
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun3
- beta - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfunEP
- beta - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- beta - Variable in class gov.nih.mipav.model.file.FileInfoMRC
-
DOCUMENT ME!
- beta - Variable in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
- beta - Variable in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
- beta - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
- beta - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware.sWarpEntry
- beta(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- BETA - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- BETA - Static variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BETA - Static variable in class gov.nih.mipav.model.algorithms.NMSimplex
- BETA - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- beta_c4 - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_f_range - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_hrbu - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_init - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- beta_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_init(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_lrb - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- BETA_MAX - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck
- beta_np_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_p_bs - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta_range_init - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- beta0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
- beta0 - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- betaArray - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- betaH - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- betaHalflife - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- BETail - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- betaj - Variable in class gov.nih.mipav.model.algorithms.libdt.Estats
- betaln(double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- BetaRand(double, double) - Method in class gov.nih.mipav.model.algorithms.Fastfit
- betatau - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.hyperparams
- betaW - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- betkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- betkm1 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- betkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- betkm2 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- BETWEEN - Enum constant in enum gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector.RangeType
-
Pixels between boundA and boundB (inclusive) will be excluded from a calculation.
- BezierCubic(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.BezierCubic
- BezierLinear() - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.BezierLinear
- BezierLinear(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.BezierLinear
- BezierQuadratic(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.BezierQuadratic
- bf_flyPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Panel to hold the BrainSurfaceFlattener or Flythrough views.
- bFactorLF - Variable in class gov.nih.mipav.model.file.jxlatte.LFChannelCorrelation
- BFF(double[][], int[][], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Confmap.BFF
- BFGS - Enum constant in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchDirectionType
- BFGS(int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BFGS
- BFGSUnFac(CDVector, CDVector, CDVector, CDVector, CVisDMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS
-
Algorithm A9.4.1 p. 355 Input: x, xplus, gc, gplus Input-Output: H Description: The BFGS update is made unless either: i) y'*s invalid input: '<' (macheps)^0.5*||y|| or ii) for every i, |(y-Hs)[i]| is less than the estimated noise in y[i].
- BFLOAT - Static variable in class gov.nih.mipav.model.file.FileUtility
-
Extension: .hdr for header, .bfloat for data
- bfrac(double, double, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- bfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- bfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
DOCUMENT ME!
- BFSNC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- BG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
-
DOCUMENT ME!
- BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
-
DOCUMENT ME!
- BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
-
DOCUMENT ME!
- BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
-
DOCUMENT ME!
- BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
DOCUMENT ME!
- BG_DISTANCE_MAP - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
DOCUMENT ME!
- bgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- bgColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- BgEdge() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdge
- BgEdgeDetect(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeDetect
- BgEdgeList() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgEdgeList
- BgImage(int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
- BgImage(short[], int, int, boolean) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection.BgImage
- bgISort(int[], int, int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- Bgr192ComplexFloat - Static variable in class gov.nih.mipav.model.file.FileCZI
-
A triple of 2 x 4 byte IEE float, representing real and imaginary part of a complex number, for the color channels blue, green, and red
- Bgr24 - Static variable in class gov.nih.mipav.model.file.FileCZI
-
8 bit triples, representing the color channels blue, green, and red
- Bgr48 - Static variable in class gov.nih.mipav.model.file.FileCZI
-
16 bit triples, representing the color channels blue, green, and red
- Bgr96Float - Static variable in class gov.nih.mipav.model.file.FileCZI
-
Triple of 4 byte IEEE float, representing the color channels blue, green, and red
- Bgra32 - Static variable in class gov.nih.mipav.model.file.FileCZI
-
8 bit triples followed by an alpha (transparency) channel
- bgrat(double, double, double, double, double[], double, int[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- bgSort(long[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- BGTG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- BGTG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- bgtgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- bgVector - Variable in class gov.nih.mipav.view.ViewToolBarBuilder
-
Vector to hold all toggle groups for VOI toggle (and custom toggle configurations)
- BH - Static variable in class gov.nih.mipav.model.structures.GenericPolygonClipper
- bi - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- BI_ALPHABITFIELDS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
6 = RGBA bit fields
- BI_BITFIELDS - Static variable in class gov.nih.mipav.model.file.FileBMP
- BI_BITFIELDS - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
3 = Bit fields (not OS22XBITMAPHEADER (size 64))
- BI_CMYK - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
11 = CMYK
- BI_CMYKRLE4 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
13 = CMYK RLE-4
- BI_CMYKRLE8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
12 = CMYK RLE-8
- BI_HUFFMAN_1D - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
3 = Huffman 1D (if OS22XBITMAPHEADER (size 64))
- BI_JPEG - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
4 = JPEG (not OS22XBITMAPHEADER (size 64))
- bi_level_black - Enum constant in enum gov.nih.mipav.model.file.charls.spiff_color_space
- bi_level_facsimile - Enum constant in enum gov.nih.mipav.model.file.charls.spiff_profile_id
- bi_level_white - Enum constant in enum gov.nih.mipav.model.file.charls.spiff_color_space
- BI_PNG - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
5 = PNG
- BI_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
- BI_RGB - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
0 = None
- BI_RLE24 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
4 = RLE 24-bit/pixel (if OS22XBITMAPHEADER (size 64))
- BI_RLE4 - Static variable in class gov.nih.mipav.model.file.FileBMP
- BI_RLE4 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
2 = RLE 4-bit/pixel
- BI_RLE8 - Static variable in class gov.nih.mipav.model.file.FileBMP
- BI_RLE8 - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.Compression
-
1 = RLE 8-bit/pixel
- bi_sigma_range0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- bi_sigma_spatial0 - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- bi_size - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- bias - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
-
invalid input: '<' Model ($\bw$ vector).
- bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Model
- bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Problem
-
If bias >= 0, we assume that one additional feature is added to the end of each data instance
- bias - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Train
- BIAS1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
- BIAS2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
- BIAS3 - Variable in class gov.nih.mipav.model.algorithms.CVODES
- biasFieldFullWidthAtHalfMaximum - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
- biasLearningRate - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
- biasMultiplier - Variable in class gov.nih.mipav.model.algorithms.SVM.svmtest
- biasMultiplier - Variable in class gov.nih.mipav.model.algorithms.SVM.VlSvm
-
invalid input: '<' Bias.
- BICOC - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BICOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BICUBIC - Enum constant in enum gov.nih.mipav.view.Preferences.InterpolateDisplay
-
Bicubic interpolation
- bicubic_interpolation_at(double[], double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW
-
Compute the bicubic interpolation of a point in an image.
- bicubic_interpolation_cell(double[][], double, double) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW
-
Bicubic interpolation in two dimensions
- bicubic_interpolation_warp(double[], double[], double[], double[], int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW
-
Compute the bicubic interpolation of an image.
- BiCubicInterpolator(CeresSolver2.Grid2D) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.BiCubicInterpolator
- BiCubicInterpolatorTestDegree00Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestDegree01Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestDegree10Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestDegree11Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestDegree12Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestDegree21Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestDegree22Function() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BiCubicInterpolatorTestZeroFunction() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- bidx - Variable in class gov.nih.mipav.model.algorithms.AgglomerativeInformationBottleneck.VlAIB
-
invalid input: '<' Minimum distance to an entry
- big - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
- big - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- big - Static variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- big - Static variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- BIG - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- BIG_ENDIAN - Static variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
Flag used to indicate Big Endianess.
- BIG_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileBase
-
Byte order.
- BIG_ENDIAN - Static variable in class gov.nih.mipav.model.file.FileDicomBase
-
Byte order.
- big_parchk - Variable in class gov.nih.mipav.model.algorithms.NL2sol
- big_tol - Variable in class gov.nih.mipav.model.structures.Voro.voronoicell_base
- big_tolerance_fac - Variable in class gov.nih.mipav.model.structures.Voro
- BIGd - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- bigEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType
-
DOCUMENT ME!
- bigEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Radio button to denote image is big endian.
- bigEndian - Variable in class gov.nih.mipav.model.file.FileBase
-
DOCUMENT ME!
- bigEndian - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data
- bigEndian - Variable in class gov.nih.mipav.model.file.RawImageInfo
-
DOCUMENT ME!
- bigEndian - Variable in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
- BIGGS_EXP6 - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BIGGS_EXP6 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BIGGS_EXP6Function() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BIGGS_EXP6Function
- biginv - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bilaplace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- bilateral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- bilateral - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- bilateralFilter(double[][], int, int, double, double, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- bilateralFilterAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
-
DOCUMENT ME!
- BilateralGradientFilter(double[][], double[][], double[][], double, double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BilateralGradientFilterLUT(double[][], double[][], double[][], double, double, double[][], double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- bilinear - Variable in class gov.nih.mipav.view.dialogs.JDialogZoom
-
Radio buttons for interpolation methods.
- BILINEAR - Enum constant in enum gov.nih.mipav.view.Preferences.InterpolateDisplay
-
Bilinear interpolation
- BILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
Biilinear interpolation.
- BILINEAR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Biilinear interpolation.
- BILINEAR - Static variable in class gov.nih.mipav.view.dialogs.JDialogZoom
-
Action command for bilinear interpolation.
- bimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
- bimag - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- bImageUpdate - Variable in class gov.nih.mipav.view.renderer.JPanelHistoLUT
-
Deprecated.Update the LUT in real-time:
- bImageUpdate - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Update the LUT in real-time:
- bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- bin1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
Number of bins for Image1
- bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Number of bins for first image.
- bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation
-
Bin to use for pixel comparisons
- bin1 - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
Number of bins for each image
- bin1 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
DOCUMENT ME!
- bin1Default - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Default number of bins for first image.
- bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bin1Label - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Label description for bin1.
- bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Textfield for bin1.
- bin1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
User input of bins
- bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- bin2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
Number of bins for Image2
- bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bin2 - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Number of bins for second image.
- bin2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM
-
DOCUMENT ME!
- bin2 - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
DOCUMENT ME!
- bin2Default - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Default number of bins for first image.
- bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bin2Label - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Label description for bin1.
- bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bin2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Textfield for bin2.
- BINARY_TYPE - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
DOCUMENT ME!
- binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
- binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
- binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
- binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
- binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
- binaryButton - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
- BinaryCostFunction(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction
- BinaryCostFunction2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction2
- BinaryCostFunction3(int, int, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction3
- BinaryCostFunction4(int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BinaryCostFunction4
- binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogClose
- binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogDilate
- binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogErode
- binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
- binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
- binaryMorphology - Variable in class gov.nih.mipav.view.dialogs.JDialogOpen
- BinaryNode - Class in gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree
- BinaryNode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
- binCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
- bincount(int[], int) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
- binExt - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data
-
Elements.
- binExternal - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF
-
must have either: Bin:External or Bin:BinData.
- BinExternal(String, String, Integer, URI) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.Data.BinExternal
-
Creates a new BinExternal object.
- BinExternal(String, String, Integer, URI) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Instrument.OTF.BinExternal
-
Creates a new BinExternal object.
- binning - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEfficientWatershed
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHillClimbingWatershed
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmLowerCompletion
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSequentialScanningWatershed
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmShortestPathWatershed
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSplitAndMergeWatershed
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTextureSegmentation
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindComponentLabelling
- binNumber - Variable in class gov.nih.mipav.model.algorithms.AlgorithmUnionFindWatershed
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
- binNumber - Variable in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
- BinoRand(double, long) - Method in class gov.nih.mipav.model.algorithms.Fastfit
- bins - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Hist
- bins - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
DOCUMENT ME!
- binSample(double[][], int) - Method in class gov.nih.mipav.model.algorithms.GaussianMixtureModelsIncompleteSamples
- binsField - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
- binsField - Variable in class gov.nih.mipav.view.ViewJFrameGraph
- binText - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
DOCUMENT ME!
- binWidth - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
Histogram bin width.
- BIOMAGNETIC_IMAGING - Enum constant in enum gov.nih.mipav.model.file.FileInfoBase.Modality
-
Image modality biomagnetic imaging.
- BIOMAGNETIC_IMAGING - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
Image modality biomagnetic imaging.
- BIOR - Enum constant in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
- bior_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior1_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior1_1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior1_3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior1_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior2_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior2_2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior2_4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior2_6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior2_8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior2_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_1_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_7_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_9_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior3_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior4_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior4_4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior4_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior5_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior5_5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior5_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior6_0_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior6_8_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- bior6_double - Static variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- BIORAD - Static variable in class gov.nih.mipav.model.file.FileUtility
-
Used by the Bio-Rad Pic format. extension: .pic invalid input: '&'invalid input: '&' fileID(54L)==12345
- biorthogonal - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.BaseWavelet
- BiorthogonalWavelets - Class in gov.nih.mipav.model.algorithms.filters
-
Copyright (c) 2012, Brian Moore Copyright (c) 2004, Ben Barrowes All rights reserved.
- BiorthogonalWavelets(ModelImage, ModelImage, ModelImage, ModelImage, int, double, boolean, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- BiorthogonalWavelets.realImaginaryComparator - Class in gov.nih.mipav.model.algorithms.filters
- BiorthogonalWavelets.realImaginaryItem - Class in gov.nih.mipav.model.algorithms.filters
- birthField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
-
textfields
- bisect(delaunay.Site, delaunay.Site) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
- bisection(float, float, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjPolynomial1f
-
Returns Float which is null if no root is found; otherwise contains the value of the root.
- BISECTION - Enum constant in enum gov.nih.mipav.model.algorithms.CeresSolver.LineSearchInterpolationType
- BISNEW(int[], double, double, double, double[], double[], double[], double[], double[], double, int, double, double, double[], double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- bit - Variable in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
- BIT - Static variable in class gov.nih.mipav.model.file.FileInterfile
-
DOCUMENT ME!
- BIT_BUF_SIZE - Static variable in class gov.nih.mipav.model.file.libjpeg
- bit_buffer_ - Variable in class gov.nih.mipav.model.file.charls.scan_encoder
- bit_count - Variable in class gov.nih.mipav.model.file.charls.golomb_code_match
- bit_stream_section - Enum constant in enum gov.nih.mipav.model.file.charls.state
- bit_to_byte_count(int) - Method in class gov.nih.mipav.model.file.charls
- bit_to_byte_count(long) - Method in class gov.nih.mipav.model.file.charls
- bit_wise_sign(int) - Method in class gov.nih.mipav.model.file.charls
- BIT16 - Static variable in class gov.nih.mipav.model.file.FileMedVision
-
DOCUMENT ME!
- BIT8 - Static variable in class gov.nih.mipav.model.file.FileMedVision
-
DOCUMENT ME!
- bitBuffer - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
- bitBuffer - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
- bitCount - Variable in class gov.nih.mipav.model.file.FileAvi
-
DOCUMENT ME!
- bitCount - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable
-
DOCUMENT ME!
- bitCount - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGBitInputStream
- bitCount - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGBitInputStream
- bitDepth - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
- bitDepth - Variable in class gov.nih.mipav.model.file.jxlatte.ExtraChannelInfo
- bitDepth - Variable in class gov.nih.mipav.model.file.jxlatte.ImageHeader
- bitDepth - Variable in class gov.nih.mipav.model.file.jxlatte.PNGWriter
- bitDepth - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
-
The bit-depth of the input file (must be between 1 and 31)
- BitDepthHeader() - Constructor for class gov.nih.mipav.model.file.jxlatte.BitDepthHeader
- BitDepthHeader(jxlatte.Bitreader) - Constructor for class gov.nih.mipav.model.file.jxlatte.BitDepthHeader
- bitDepths - Variable in class gov.nih.mipav.model.file.jxlatte.JXLImage
- BitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitInputStream
- BitInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitInputStream
- BitInputStream(InputStream, boolean) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitInputStream
- BitInputStream(InputStream, boolean) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitInputStream
- BITMAP - Variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType
-
"BM" - Windows or OS/2 bitmap
- BITMAP - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
-
"BM" - Windows or OS/2 bitmap
- BitmapType(int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory.BitmapType
- bitMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSM2
- bitMask - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTimeFitting
- bitMask - Variable in class gov.nih.mipav.model.file.FileDicomJPEG
-
Useful bit mask for getting appropriate bits out of number.
- bitpix - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze
-
Bits per pixel.
- bitpix - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
-
Bits per pixel
- bitpix - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText
-
Bits per pixel.
- bitpix - Variable in class gov.nih.mipav.model.file.FileInfoSPM
-
DOCUMENT ME!
- bitPointer - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder
-
DOCUMENT ME!
- bitread_perm_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
- bitread_working_state() - Constructor for class gov.nih.mipav.model.file.libjpeg.bitread_working_state
- bitreader - Variable in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- Bitreader(InputStream) - Constructor for class gov.nih.mipav.model.file.jxlatte.Bitreader
- bitreaders - Variable in class gov.nih.mipav.model.file.jxlatte.Frame
- BITREV(double[], int) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- bitrevorder(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
- bitrevorder(double[]) - Method in class gov.nih.mipav.model.algorithms.WalshHadamardTransform3
- bitrv2(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- bitrv208(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- bitrv208neg(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- bitrv216(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- bitrv216neg(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- bitrv2conj(int, int[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- bits - Variable in class gov.nih.mipav.model.file.FileDicomJPEG
-
Read in DHT header.
- bits - Variable in class gov.nih.mipav.model.file.jxlatte.VLCTable
- bits - Variable in class gov.nih.mipav.model.file.libjpeg.JHUFF_TBL
- bits - Variable in class gov.nih.mipav.model.file.libxl.HuffmanTableEntry
- bits - Variable in class gov.nih.mipav.model.file.libxl.JHUFF_TBL
- bits() - Method in class gov.nih.mipav.model.algorithms.ConfluentHypergeometric
-
Determines the number of significant figures of machine precision to arrive at the size of the array the numbers must be stored in to get the accuracy of the solution.
- BITS - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGHuffmanInputStream
- BITS - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGHuffmanInputStream
- BITS_IN_JSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
- bits_left - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_perm_state
- bits_left - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.charls_frame_info
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.charls_spiff_header
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.default_traits
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits12
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16pair
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16quad
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16triplet
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32pair
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32quad
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32triplet
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8pair
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8quad
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8triplet
- bits_per_sample - Variable in class gov.nih.mipav.model.file.charls.traits
- bits_per_sample - Variable in class gov.nih.mipav.model.file.libxl.ExtraChanelInfo
-
Total bits per sample for this channel.
- bits_per_sample - Variable in class gov.nih.mipav.model.file.libxl.JxlBasicInfo
-
Original image color channel bit depth.
- bits_per_sample - Variable in class gov.nih.mipav.model.file.libxl.JxlBitDepth
-
Custom bits per sample
- bits_per_sample() - Method in class gov.nih.mipav.model.file.charls.portable_anymap_file
- BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileSTK
-
DOCUMENT ME!
- BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileSVS
-
DOCUMENT ME!
- BITS_PER_SAMPLE - Static variable in class gov.nih.mipav.model.file.FileTiff
-
DOCUMENT ME!
- bits_per_sample_ - Variable in class gov.nih.mipav.model.file.charls.portable_anymap_file
- bitsAllocated - Variable in class gov.nih.mipav.model.file.FileInfoDicom
-
Bits allocated per pixel.
- bitsAllocated - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- bitsAllocated - Variable in class gov.nih.mipav.model.file.FileRaw
- bitsAllocated - Variable in class gov.nih.mipav.model.file.FileRawChunk
- bitsAvail - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
- bitsAvail - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
- bitset - Variable in class gov.nih.mipav.model.algorithms.AlgorithmStandardDeviationThreshold
-
bitset for src image
- BITSET - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFloodFill
-
DOCUMENT ME!
- BitSetUtility() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET.BitSetUtility
- bitsLeft - Variable in class gov.nih.mipav.model.file.FileSVS
- bitsLeft - Variable in class gov.nih.mipav.model.file.FileTiff
- bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileBase
-
DOCUMENT ME!
- bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- bitsPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- bitsPerSample - Variable in class gov.nih.mipav.model.file.FileSVS
- bitsPerSample - Variable in class gov.nih.mipav.model.file.FileTiff
- bitsPerSample - Variable in class gov.nih.mipav.model.file.jxlatte.BitDepthHeader
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits12
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16pair
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16quad
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits16triplet
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32pair
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32quad
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits32triplet
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8pair
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8quad
- BitsPerSample - Variable in class gov.nih.mipav.model.file.charls.lossless_traits8triplet
- bitsRead - Variable in class gov.nih.mipav.model.file.jxlatte.Bitreader
- bitsStored - Variable in class gov.nih.mipav.model.file.FileInfoDicom
-
Bits stored per pixel>
- bitsStored - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- bitsStored - Variable in class gov.nih.mipav.model.file.FileRaw
- bitsStored - Variable in class gov.nih.mipav.model.file.FileRawChunk
- bitstate - Variable in class gov.nih.mipav.model.file.libjpeg.huff_entropy_decoder
- bitsToGet - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder
-
DOCUMENT ME!
- bitStreamEOF() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
- BitSwapInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileSVS.BitSwapInputStream
- BitSwapInputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.FileTiff.BitSwapInputStream
- bitSwapTable - Static variable in interface gov.nih.mipav.model.file.FileSVS.BitSwapTable
- bitSwapTable - Static variable in interface gov.nih.mipav.model.file.FileTiff.BitSwapTable
- bitwise_and(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_and(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_and_into(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_and_into(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_or(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_or(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_or_into(CVisShape) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bitwise_or_into(RECT) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- bivariateCubicCoefficients(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- bivariateCubicCoefficients5By5(int, int, double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- bj - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- bk - Variable in class gov.nih.mipav.model.structures.Voro.c_loop_subset
- bKGD - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngChunkType
- bkvar - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
- bkvarf - Variable in class gov.nih.mipav.model.algorithms.libdt.VidSeqSegmParams
- bl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- bl - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- BL - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Square
- bl0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- bl0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- bLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- black - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
DOCUMENT ME!
- BLACK - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- BLACK - Static variable in interface gov.nih.mipav.model.file.FileSVS.ModHuffmanTable
- BLACK - Static variable in interface gov.nih.mipav.model.file.FileTiff.ModHuffmanTable
- BlackBody - Static variable in class gov.nih.mipav.model.structures.ModelLUT
-
Customized LUTs
- blackEnd - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction
-
gray scale value at which the black membership function ends the linear transition from 1 at the lowest gray scale value to 0
- blackEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
- blackImage - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint
-
used to create the "selected" state of the buttons
- blackImage - Variable in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
- blackValue0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- blackValue1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- blackValue2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- blackValue3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- blah - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
- blank - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
blank image
- blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
Radio button selected if inserted slices are blank.
- blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- blank - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
DOCUMENT ME!
- blank - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
DOCUMENT ME!
- blank - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse
-
DOCUMENT ME!
- blank - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse
-
DOCUMENT ME!
- BLANK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertSlice
-
Blank slice type - the inserted slice is blank.
- BLANK - Static variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmInsertVolume
-
Blank slice type - the inserted slice is blank.
- BLANK - Variable in class gov.nih.mipav.model.file.FileFits
-
DOCUMENT ME!
- BLANK - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
BLANK String
- blank_continuous_wavelet() - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- blank_discrete_wavelet(int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- BLANK_OVERLAY - Static variable in class gov.nih.mipav.view.dialogs.JDialogOverlay
-
blank overlay string.
- BLANK_SLICE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
DOCUMENT ME!
- BLANK_VOLUME - Static variable in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
Blank volume type - the inserted volume is blank.
- BlankCanvasFallback() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BlankCanvasFallback
-
Creates a new
ContourPlot.BlankCanvasFallbackinstance. - blankCursor - Static variable in class gov.nih.mipav.view.MipavUtil
-
Custom cursor: no cursor.
- blankFramesSent - Variable in class gov.nih.mipav.model.file.FileAvi
-
DOCUMENT ME!
- BlankJistHook - Class in gov.nih.mipav.view.dialogs
-
This class is an example class for tying existing plugins into the JIST interface.
- BlankJistHook() - Constructor for class gov.nih.mipav.view.dialogs.BlankJistHook
- blanklabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
- BLEACH_ROI - Static variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- bleachedROIShape - Variable in class gov.nih.mipav.model.file.FileInfoLSM
-
DOCUMENT ME!
- bleachedROIShape - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- bleachedROIShape - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- bleachKnotX - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- bleachKnotY - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- blend(int, int, double) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Img
- blend(String, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
-
Sets blending between imageA and imageB.
- Blend - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MipavLightingEffect
-
Set surface blend value.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.SurfaceLightingEffect
-
Sets surface blend/transparency value for alph-blending in the shader.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeObject
-
Set object blend value.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePlaneEffect
-
Sets the blend factor shader parameter between imageA and imageB.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumePreRenderEffect
-
Set the blend value.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPass
-
Sets the blend factor shader parameter between imageA and imageB.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
-
Sets the blend factor shader parameter between imageA and imageB.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeVOIEffect
-
Set the blend value.
- Blend(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
-
Sets the blend factor shader parameter between imageA and imageB.
- BLEND_ADD - Static variable in interface gov.nih.mipav.model.file.jxlatte.FrameFlags
- BLEND_BLEND - Static variable in interface gov.nih.mipav.model.file.jxlatte.FrameFlags
- blend_info - Variable in class gov.nih.mipav.model.file.libxl.JxlLayerInfo
-
The blending info for the color channels.
- BLEND_MULADD - Static variable in interface gov.nih.mipav.model.file.jxlatte.FrameFlags
- BLEND_MULT - Static variable in interface gov.nih.mipav.model.file.jxlatte.FrameFlags
- BLEND_REPLACE - Static variable in interface gov.nih.mipav.model.file.jxlatte.FrameFlags
- blendAdd(jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.Point, jxlatte.Point, jxlatte.Point, jxlatte.Dimension) - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- blendBlend(jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.Point, jxlatte.Point, jxlatte.Point, jxlatte.Dimension, boolean, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- blendBuffers(jxlatte.ImageBuffer, jxlatte.ImageBuffer[], jxlatte.ImageBuffer[], jxlatte.Point, jxlatte.Point, jxlatte.Point, jxlatte.Dimension, int, jxlatte.Frame, jxlatte.BlendingInfo, boolean) - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- blendBuffers(BufferedImage, BufferedImage) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow
-
Blend two BufferedImages, representing the left and right-eye views into a Red-Cyan stereo anaglyph.
- blendColor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JStereoWindow
-
Blends two packed-integer colors (RGB) to create a Red-Cyan anaglyph.
- blendColor(int, int) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor
-
blendColor: blends two colors in ARGB format from the BufferedImage class, using an alpha value of 0.5.
- BlendColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- blendComposite - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- blendFrame(jxlatte.ImageBuffer[], jxlatte.Frame) - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- blendingInfo - Variable in class gov.nih.mipav.model.file.jxlatte.FrameHeader
- BlendingInfo() - Constructor for class gov.nih.mipav.model.file.jxlatte.BlendingInfo
- BlendingInfo(int, int, boolean, int) - Constructor for class gov.nih.mipav.model.file.jxlatte.BlendingInfo
- BlendingInfo(jxlatte.Bitreader, boolean, boolean) - Constructor for class gov.nih.mipav.model.file.jxlatte.BlendingInfo
- blendingInfos - Variable in class gov.nih.mipav.model.file.jxlatte.Patch
- blendmode - Variable in class gov.nih.mipav.model.file.libxl.JxlBlendInfo
-
Blend mode.
- blendMulAdd(jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.Point, jxlatte.Point, jxlatte.Point, jxlatte.Dimension, boolean, boolean, boolean) - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- blendMult(jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.ImageBuffer, jxlatte.Point, jxlatte.Point, jxlatte.Point, jxlatte.Dimension, boolean) - Method in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- blendParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- blendParameters - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
- blendSlider - Variable in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Opacity slider of texture 3D volume opacity changes.
- blendSlider - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase
-
Deprecated.Opacity slider of texture 3D volume opacity changes.
- BLGAM - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- blind_deconvolution_example() - Method in class gov.nih.mipav.model.algorithms.fMRIBlindDeconvolution
- BlindDeblur - Class in gov.nih.mipav.model.algorithms
- BlindDeblur() - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur
- BlindDeblur(ModelImage, ModelImage, ModelImage, String, String, int) - Constructor for class gov.nih.mipav.model.algorithms.BlindDeblur
- BlindDeblur.Pair<T,
U> - Class in gov.nih.mipav.model.algorithms - blist - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
The right end points of the subintervals in the partition of the given integration range (lower, upper).
- blist - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
The right end points of the subintervals in the partition of the given integration range (lower, upper).
- blk_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_coef_controller
- blob - Variable in class gov.nih.mipav.model.algorithms.LocalIntensityOrderPattern.tliop
- block - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
- block - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection.yxBlockItem
- block - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- Block() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Block
- Block(int[], int[], int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
- Block(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Block
- block_data_list() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
- block_density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
- block_density - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions
- block_diagonal_EtE_inverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- block_diagonal_EtE_inverse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- block_diagonal_FtF_inverse() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- block_diagonal_FtF_inverse_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ImplicitSchurComplement
- block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Block
- block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Configuration
- block_dimension - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
- block_id - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Cell
- block_layout_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
- block_pair_container - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.ImageObject
- block_positions_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
- BLOCK_SENSITIVE_PEAK_SIGNAL_TO_NOISE_RATIO - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- block_size - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
- block_size - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
- block_size - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- block_structure() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
- block_structure_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
- BlockComparator() - Constructor for class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.BlockComparator
- blockCRC - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- BlockEvaluatePreparer() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockEvaluatePreparer
- blockHalf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- blockInt - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- BlockJacobianWriter(CeresSolver.EvaluatorOptions, CeresSolver.Program) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
- BlockJacobiPreconditioner(CeresSolver.BlockSparseMatrix) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobiPreconditioner
- BlockJacobiPreconditionerTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockJacobiPreconditionerTest
- BlockJacobiPreconditionerTestLargeProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockJacobiPreconditionerTestSmallProblem() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- blockList - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.Container
- blockList - Variable in class gov.nih.mipav.model.file.jxlatte.HFMetadata
- BlockOrderingToScalarOrdering(Vector<Integer>, Vector<Integer>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2
- blockOverrun() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
- BlockPermutationToScalarPermutation() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockRandomAccessDenseMatrix(Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
- BlockRandomAccessDiagonalMatrix(Vector<Integer>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
- BlockRandomAccessDiagonalMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockRandomAccessMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessMatrix
- BlockRandomAccessSparseMatrix(Vector<Integer>, Set<CeresSolver.Pair<Integer, Integer>>) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
- BlockRandomAccessSparseMatrixGetCell() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockRandomAccessSparseMatrixTestIntPairToLongOverflow() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockRandomAccessSparseMatrixTestLongToIntPair() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- blockRandomised - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- blockRandomised - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- blocks - Variable in class gov.nih.mipav.model.file.jxlatte.HFCoefficients
- blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDiagonalMatrix
- blocks_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
- blocks_in_MCU - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- blocks_mode() - Constructor for enum gov.nih.mipav.model.structures.Voro.blocks_mode
- blockSide - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- blockSide - Variable in class gov.nih.mipav.view.dialogs.JDialogFacetModel
- blockSize - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.Allocator
- blockSize100k - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- blockSize100k - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- BlockSparseMatrix() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
- BlockSparseMatrix(CeresSolver.CompressedRowBlockStructure) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrix
- BlockSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixCreateDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixRandomMatrixOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.BlockSparseMatrixRandomMatrixOptions
- BlockSparseMatrixTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestAppendAndDeleteBlockDiagonalMatrix() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestAppendRows() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixTestLeftMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestLeftMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixTestRightMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestRightMultiplyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixTestSetZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestSetZeroTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixTestSquaredColumnNormTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestSquaredColumnNormTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- BlockSparseMatrixTestToDenseMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.BlockSparseMatrixTest
- BlockSparseMatrixTestToDenseMatrixTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- blocksperrow - Variable in class gov.nih.mipav.model.file.libjpeg.jvirt_barray_control
- bloodGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
- blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConvolver
- blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmDConvolver
- blue - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
-
Flags to indicate which color channels to process.
- blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Flags indicate which color channel to process.
- blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlurSep
-
Flags indicate which color channel to process.
- blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.model.file.FileImageXML.LUValue
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.model.file.FileWriteOptions
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.model.file.jxlatte.CIEPrimaries
- blue - Variable in class gov.nih.mipav.model.file.jxlatte.ExtraChannelInfo
- blue - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.ThermalProbe
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.ViewJComponentAnimate
-
Border color, red, green, and blue components:
- blue - Variable in class gov.nih.mipav.view.ViewJComponentAnimateClip
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
DOCUMENT ME!
- blue - Variable in class gov.nih.mipav.view.ViewJFrameBase
-
Blue channel value of the paint color.
- BLUE - Static variable in class gov.nih.mipav.model.structures.ModelLUT
-
Sets up the transfer function colors to be monochrome-blue.
- BLUE - Static variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
Blue channel.
- BLUE - Static variable in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Component tag indicator.
- BLUE - Static variable in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase
-
Deprecated.Component tag indicator.
- BLUE - Static variable in class gov.nih.mipav.view.renderer.ViewJComponentVolOpacityBase
-
The blue channel transfer function.
- BLUE - Static variable in class gov.nih.mipav.view.ViewJComponentHLUTBase
-
The blue channel transfer function.
- BLUE_CHANNEL - Static variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
BLUE CHANNEL String
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
Blue channel.
- BLUE_OFFSET - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
-
Blue channel.
- BLUE_WEIGHT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
- blue1 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
- blue1 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
DOCUMENT ME!
- blue1Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
DOCUMENT ME!
- blue2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
- blue2 - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
DOCUMENT ME!
- blue2Text - Variable in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
DOCUMENT ME!
- BlueA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- blueArray - Variable in class gov.nih.mipav.model.file.FileInfoLSM
-
DOCUMENT ME!
- blueArray - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- BlueB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- blueBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
The blue sphere branch group that branches underneath the vasculatureBG, and represents the blue sphere branch group.
- blueBlackLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
- blueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHE
- blueBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAHElocal
- blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow
-
DOCUMENT ME!
- blueBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
- blueBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- blueBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRET
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogIntensityHistogram
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLawsTexture
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
-
DOCUMENT ME!
- blueButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
DOCUMENT ME!
- blueChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- blueChannel - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
-
DOCUMENT ME!
- blueChannelNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
- blueCheckbox - Variable in class gov.nih.mipav.view.components.JPanelColorChannels
-
DOCUMENT ME!
- blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- blueCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Checkbox to select blue image.
- blueCheckBox - Variable in class gov.nih.mipav.view.JPanelHistogram
-
checkbox for turning on / off the blue component of the color look-up table.
- blueCheckBoxA - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Update Blue channel histogram check box A, B.
- blueCheckBoxA - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.DOCUMENT ME!
- blueCheckBoxB - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Update Blue channel histogram check box A, B.
- blueCheckBoxB - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.DOCUMENT ME!
- blueGamma - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
- blueLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- blueLine - Variable in class gov.nih.mipav.model.structures.ModelLUT
-
Function that maps the blue function of the LUT.
- blueLine - Variable in class gov.nih.mipav.model.structures.ModelRGB
-
Function that maps the blue function of the LUT.
- blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian
-
DOCUMENT ME!
- blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian
-
DOCUMENT ME!
- blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian
-
DOCUMENT ME!
- blueMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc
-
DOCUMENT ME!
- blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmCubicLagrangian
-
DOCUMENT ME!
- blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHepticLagrangian
-
DOCUMENT ME!
- blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmQuinticLagrangian
-
DOCUMENT ME!
- blueMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmWSinc
-
DOCUMENT ME!
- blueNorm - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
- blueOffset - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- BlueOnA - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- BlueOnB - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- blueRequested - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIndependentComponents
- blueRGBButton - Variable in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.R, G, B channel control buttons.
- blueRGBButton - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.DOCUMENT ME!
- blueShiftColors - Variable in class gov.nih.mipav.view.ColorWheel
-
array of r,g,b values after blue shifting
- blueShiftColors - Variable in class gov.nih.mipav.view.ViewJComponentDTIImage
-
arry of r,g,b after blue shift *
- blueSphere - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
The geometry group of the blue sphere.
- blueSphereTG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
blue sphere transform group that set up the translation.
- blueText - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- blueValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Weighting values for the red, green, and blue channels.
- blueValue - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Weighting values for the red, green, and blue channels.
- blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
-
DOCUMENT ME!
- blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogImageMath
- blueValue - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
-
DOCUMENT ME!
- blueVector - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- blueWhiteLevel - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.DisplayOptions
- blur - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSkullRemoval
-
when true, blur the output
- blur - Variable in class gov.nih.mipav.model.algorithms.MotionDetection
- blur - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
- blur(ModelImage, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
-
Returns a blurred image of the input image.
- BLUR - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer
-
DOCUMENT ME!
- BLUR_KERNEL - Static variable in class gov.nih.mipav.model.GaussianKernelFactory
- BLUR_KERNEL_SIZE - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- BLUR_MIN - Static variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
minimum value for blurring, at 1.0.
- blur_x_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blur_y_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blur_z_lims - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blurAllRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
-
Button for blurring the face / skull.
- blurBox - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast
-
Blur image check box.
- blurCheck - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
DOCUMENT ME!
- blurFace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer
-
Blurs the face mask voxels The blurred face volume is copied into the ModelImage and displayed to the user.
- blurFaceRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
-
Button for blurring just the face.
- blurFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface
-
If true then the input image is blurred slightly.
- blurFlag - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes
-
If true then the input image is blurred slightly.
- blurFlag - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
-
If true then the input image is blurred slightly.
- blurFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
DOCUMENT ME!
- blurI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- bluring - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.RayCastRenderer
-
Blur the final image to reduce voxel contrast.
- blurR - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- blurredImageSpectrum - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution
-
DOCUMENT ME!
- blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Blurred input image.
- blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Blurred input image.
- blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Blurred input image.
- blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Blurred input image.
- blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Blurred input image.
- blurredInput - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Blurred input image.
- blurredReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution
-
DOCUMENT ME!
- blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Blurred reference image.
- blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Blurred reference image.
- blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Blurred reference image.
- blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Blurred reference image.
- blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Blurred reference image.
- blurredRef - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Blurred reference image.
- blurredSpectrumImags - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution
-
DOCUMENT ME!
- blurredSpectrumReals - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIteratedBlindDeconvolution
-
DOCUMENT ME!
- blurringDiameter - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
DOCUMENT ME!
- blurringDiameterText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
DOCUMENT ME!
- blurringFreq - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
user-selectable variables used in the FFT-blurring operation used as interim variables in starting the algorithm op.
- blurringFreqText - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
DOCUMENT ME!
- blurryImage - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blurryImageExtension - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blurryImageFileDirectory - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blurryImageFileName - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- blurSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurface
-
The amount to blur to smooth surface.
- blurSigma - Variable in class gov.nih.mipav.model.algorithms.AlgorithmExtractSurfaceCubes
-
The amount to blur to smooth surface.
- blurSigma - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmMarchingCubes
-
The amount to blur to smooth surface.
- blurTF - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
DOCUMENT ME!
- blurValue - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
DOCUMENT ME!
- bm - Variable in class gov.nih.mipav.model.structures.Voro
- bm - Variable in class gov.nih.mipav.view.ViewJFrameMemory
-
DOCUMENT ME!
- BM3D - Class in gov.nih.mipav.model.algorithms.filters
- BM3D(ModelImage[], ModelImage, boolean, double, int, int, int, boolean, String, double, int, int, int, boolean, String) - Constructor for class gov.nih.mipav.model.algorithms.filters.BM3D
- bm3d_1st_step(double, ModelImage, int, int, int, int, double, double, boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
- bm3d_2nd_step(double, ModelImage, ModelImage, int, int, int, int, double, boolean, String) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
- BM3D.indexValueComparator - Class in gov.nih.mipav.model.algorithms.filters
- BM3D.indexValueItem - Class in gov.nih.mipav.model.algorithms.filters
- bm3dAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
- BM3Dwavedec2(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- BM3Dwaverec2(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- BMatrixButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- bmatrixFileName - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
B Matrix file name
- bmatrixPath - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
bmatrix path
- bMatrixVals - Variable in class gov.nih.mipav.model.file.DTIParameters
- bMatrixVals - Variable in class gov.nih.mipav.model.file.FileBRUKER
- bmatValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- BMCANP(double, double[], double[], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BMCAP1(double[], double[], double, int, int, int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[][], double[], double[][], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- Bmp - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
- BMP - Static variable in class gov.nih.mipav.model.file.FileUtility
-
extension: .bmp.
- BMP_DFMT - Static variable in class gov.nih.mipav.model.file.FileJPEG2000
- BMP_MULTIFILE - Static variable in class gov.nih.mipav.model.file.FileUtility
-
Bmp multifile
- BMPHC1(int, double[], double[], double[], int, int, int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[], double[][], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BmpHeaderDescriptor(MetadataExtractor.BmpHeaderDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDescriptor
- BmpHeaderDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpHeaderDirectory
- BMPHYC(int, double[], double[], double[], boolean, boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- BmpMetadataReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpMetadataReader
- BmpReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BmpReader
- BmpReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.BmpReaderTest
- bmtxtFileBrowseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
browse button
- bmtxtFilePath - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
This is the full path to the b matrix file
- bmtxtFilePathTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
path to bmatrix file
- bmtxtFileRadio - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
b-matrix file option
- bmv(int, double[][], double[][], int, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
- bn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- bn - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- BN - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bndind - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
- bndptr - Variable in class gov.nih.mipav.model.structures.jama.METIS.graph_t
- bNeedsRedraw - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Flag is set if one of the controls changed a value and the renderering needs to be redrawn when the mouse is released.
- bodyPart - Variable in class gov.nih.mipav.model.file.FileInfoImageXML
-
DOCUMENT ME!
- bogusBorderPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
- bogusBorderPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder
-
The button used to toggle borders around painted areas.
- bogusShowPrivateButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
- boldBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation
-
checkbox for bold style.
- bolus - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- BOn - Variable in class gov.nih.mipav.model.structures.ModelRGB
-
Flag indicating whether the blue channel should be displayed.
- BONE - Static variable in class gov.nih.mipav.model.structures.ModelLUT
-
Sets up the transfer function to be yellow-ish orange which is supposed to make bones look good.
- BONE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Value which indicates a bone in the image.
- BONE_SEG - Static variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Value which indicates a bone in the image.
- boneBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
The root branch group of the bone.
- bonePresetButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
DOCUMENT ME!
- BOOLEAN - Enum constant in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
-
Data buffer is of type Boolean (1 bit per voxel).
- BOOLEAN - Static variable in class gov.nih.mipav.model.file.FileDM3
-
DOCUMENT ME!
- BOOLEAN - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate that the data buffer is of type Boolean (1 bit per voxel).
- BOOLEAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- BOOLEAN - Static variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
- BOOLEAN_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate, as a String, that the data buffer is of type boolean.
- booleanBox - Variable in class gov.nih.mipav.view.JPanelEditBoolean
-
DOCUMENT ME!
- booleanGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
-
DOCUMENT ME!
- BooleanOperation() - Constructor for enum gov.nih.mipav.model.structures.ComputationalGeometry.BooleanOperation
- BooleanOperations(ArrayList<ComputationalGeometry.MyVector2>, ArrayList<ComputationalGeometry.MyVector2>, ComputationalGeometry.BooleanOperation) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.SutherlandHodgmanModified
- bootstrap() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
- bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
- bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
- bootstrapClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
- bootstrapWeighted() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- bootstrapWithoutReplacement() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeClassification
- bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeProbability
- bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeRegression
- bootstrapWithoutReplacementClassWise() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.TreeSurvival
- bootstrapWithoutReplacementWeighted() - Method in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- border - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
- BORDER - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Vertex
- BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
- BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
- BORDER_CLEARING - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
- BORDER_CONSTANT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
-
This code is a port of the MATLAB Pyramid Toolbox =========================== matlabPyrTools ============================ This package contains some MatLab tools for multi-scale image processing.
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
- BORDER_DEFAULT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
- BORDER_REFLECT - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
- BORDER_REFLECT_101 - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
- BORDER_REPLICATE - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
- border_widthText - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmContrastEnhancementUsingExposureFusion
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSimulatedExposureFusion
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBilateralFilter
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.ImageQuality
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.NoiseLevel
- BORDER_WRAP - Variable in class gov.nih.mipav.model.algorithms.PyramidToolbox
- BORDER0 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
- BORDER1 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
- BORDER2 - Static variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
- borderActiveImage - Variable in class gov.nih.mipav.view.ViewControlsImage
-
DOCUMENT ME!
- borderB - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
- borderB - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate
-
false if column radio button selected.
- borderB - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- borderClearAlgo25D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
-
DOCUMENT ME!
- borderClearAlgo2D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
-
DOCUMENT ME!
- borderClearAlgo3D - Variable in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
-
DOCUMENT ME!
- borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology25D
-
Removes objects that touch (i.e., are connected to) the border
- borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology2D
-
Removes objects that touch (i.e., are connected to) the border
- borderClearing(boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMorphology3D
-
Removes objects that touch (i.e., are connected to) the border
- borderCol - Variable in class gov.nih.mipav.view.dialogs.JDialogAnimate
-
DOCUMENT ME!
- borderCol - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
z slice.
- borderColor - Variable in class gov.nih.mipav.view.BorderedButton
-
DOCUMENT ME!
- borderColor - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- borderColor - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
color for the line border surrounding each image in the light-box.
- borderColor - Variable in class gov.nih.mipav.view.ViewJFrameLightBox
-
Color for the line border surrounding each image in the light-box.
- BorderedButton - Class in gov.nih.mipav.view
-
This class was created for use in the JDialogMultiPaint class.
- BorderedButton(String) - Constructor for class gov.nih.mipav.view.BorderedButton
-
Creates a new BorderedButton object.
- borderG - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
- borderImageSlider - Variable in class gov.nih.mipav.view.ViewControlsImage
-
DOCUMENT ME!
- borderOn - Variable in class gov.nih.mipav.view.BorderedButton
-
DOCUMENT ME!
- borderPaintButton - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
- borderPaintButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder
-
The button used to toggle borders around painted areas.
- borderR - Variable in class gov.nih.mipav.model.algorithms.LightboxGenerator
- borderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogCrop
-
DOCUMENT ME!
- borderSize - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- borderSize - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
spacing for the line border surrounding each image in the light-box.
- borderSize - Variable in class gov.nih.mipav.view.ViewJFrameLightBox
-
Spacing for the line border surrounding each image in the light-box.
- bordersizeL - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- bordersizeText - Variable in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
DOCUMENT ME!
- borderTitles - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay
-
DOCUMENT ME!
- bot - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
- BOTH - Enum constant in enum gov.nih.mipav.model.structures.jama.SuperLU.DiagScale_t
- BOTH - Static variable in class gov.nih.mipav.view.ViewJComponentBase
-
DOCUMENT ME!
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
-
possible values for segmentation.
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyConnectednessSegmentation
-
This code is ported from MATLAB routines adjacency, affinity, afc, and irfc written by Joakim Lindblad References: 1.)
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans
-
possible values for segmentation.
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
possible values for segmentation.
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans
-
DOCUMENT ME!
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
-
DOCUMENT ME!
- BOTH_FUZZY_HARD - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
DOCUMENT ME!
- bothCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior
-
wake up condition for awt, component and mouse.
- bothCondition - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer
-
wake up condition for awt, component and mouse.
- bothPanel - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- botPaddingFactor - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
- botPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- botPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- bottom - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisRect
- Bottom() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CVisShape
- BOTTOM - Static variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
- BOTTOM_EDGE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Bottom bounding edge of the canvas in world coordinates.
- BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology25D
- BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology2D
- BOTTOM_HAT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmGrayScaleMorphology3D
- bottomFace - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogAddMargins
-
DOCUMENT ME!
- bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
DOCUMENT ME!
- bottomInput - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
DOCUMENT ME!
- bottomLeftBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
- bottomPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationEM
-
DOCUMENT ME!
- bottomPad - Variable in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
DOCUMENT ME!
- bottomPanel - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
panels *
- bottomPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
DOCUMENT ME!
- bottomPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
panels *
- bottomRightBox - Variable in class gov.nih.mipav.view.dialogs.JDialogTreMethod
- bottomSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
DOCUMENT ME!
- bottomSide - Variable in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
DOCUMENT ME!
- bottomsite - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_context_internal
- bottomsite - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay
- botX - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- botY - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- botZ - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- bound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNLConInt2
-
DOCUMENT ME!
- bound - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
finite bound of integration range used in dqagie (has no meaning if interval is doubly-infinite).
- bound - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
finite bound of integration range used in dqagie (has no meaning if interval is doubly-infinite).
- bound_list(GenericPolygonClipper.lmt_node[], double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- boundA - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The lower bound of the exclusion
- boundariesCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
- boundariesImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
- boundariesImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
- boundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh
- boundary - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.TriangleMesh
- boundary() - Method in class gov.nih.mipav.model.algorithms.LSCM.Edge
- boundary() - Method in class gov.nih.mipav.model.algorithms.LSCM.Vertex
- Boundary - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- Boundary(LSCM.Mesh) - Constructor for class gov.nih.mipav.model.algorithms.LSCM.Boundary
- BOUNDARY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmWatershed
-
DOCUMENT ME!
- BOUNDARY - Static variable in class gov.nih.mipav.model.structures.VOI
-
Indicates only the boundary of the VOI should be displayed.
- BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.HornSchunk
- BOUNDARY_CONDITION - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
- BOUNDARY_CONDITION_DIRICHLET - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
- BOUNDARY_CONDITION_PERIODIC - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
- BOUNDARY_CONDITION_REFLECTING - Variable in class gov.nih.mipav.model.algorithms.TVL1FLOW
- boundary_edges() - Method in class gov.nih.mipav.model.algorithms.Confmap.TriangleMesh
- boundary_mode_mirror - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img
-
boundary mode that will mirror the Img for out of bounds positions
- boundary_mode_repeat_edge - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img
-
boundary mode that will repeat the edge of of an Img for out of bounds positions.
- boundary_mode_repeat_image - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img
-
boundary mode that will repeat the Img for out of bounds positions.
- boundary_mode_zero - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.Img
-
boundary mode that will return 0 for out of bounds positions.
- boundary_vertices() - Method in class gov.nih.mipav.model.algorithms.Confmap.TriangleMesh
- boundaryDir - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual
-
DOCUMENT ME!
- boundaryDir - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake
-
DOCUMENT ME!
- boundaryDirBox - Variable in class gov.nih.mipav.view.dialogs.JDialogEvolveBoundaryManual
-
DOCUMENT ME!
- boundaryDirBox - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake
-
DOCUMENT ME!
- BoundaryEmphasis - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState
-
contribution of the boundary emphasis slider and therefor the contribution of the 2nd derivative of the data.
- boundaryEmphasisSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelMultiDimensionalTransfer
-
Boundary emphasis slider slider.
- boundaryFinding(ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
Dynamic narrow band tracing algorithm.
- boundaryImage - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryExt
-
boundary image.
- boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Maximum iterations to generate new boundary.
- boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSnake
-
Maximum number of snake iterations.
- boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Maximum iterations to generate new boundary.
- boundaryIterations - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSnake
-
Maximum number of snake iterations.
- boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF
-
DOCUMENT ME!
- boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogBSnake
-
DOCUMENT ME!
- boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF
-
DOCUMENT ME!
- boundaryIterations - Variable in class gov.nih.mipav.view.dialogs.JDialogSnake
-
DOCUMENT ME!
- boundB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The upper bound of the exclusion
- boundingBox - Variable in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
- boundingBox - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Normalizer2
- boundingBox - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Normalizer3
- boundingBox - Variable in class gov.nih.mipav.model.structures.VOI
-
If true the bounding box of the VOI should be displayed.
- BoundingBoxColor - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- BoundingBoxEffect - Class in gov.nih.mipav.view.renderer.WildMagic.Render
- BoundingBoxEffect(Vector3f, Vector3f, Vector3f, Vector3f) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Render.BoundingBoxEffect
- boundingBoxField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
-
textfields
- boundingBoxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Bounding box control panel.
- boundingBoxPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Bounding box control panel.
- boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay
-
Check box for turning box on and off.
- boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Check box for turning bounding boxes on and off.
- boundingCheck - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox
-
Check box for turning box on and off.
- boundingCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Check box for turning box on and off.
- boundingCheck - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Check box for turning bounding boxes on and off.
- boundingCheckA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Arbitrary and static clipping plane check box.
- boundingCheckStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Arbitrary and static clipping plane check box.
- boundingCheckStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Arbitrary and static clipping plane check box.
- boundingCheckX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check box to turn the clipping plane frame on and off.
- boundingCheckXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
X,Y,Z inverse clipping plane check box.
- boundingCheckY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check box to turn the clipping plane frame on and off.
- boundingCheckYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
X,Y,Z inverse clipping plane check box.
- boundingCheckZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check box to turn the clipping plane frame on and off.
- boundingCheckZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
X,Y,Z inverse clipping plane check box.
- boundLB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The lower blue bound of the exclusion
- boundLG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The lower green bound of the exclusion
- boundLR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The lower red bound of the exclusion
- bounds - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
integer scalar code for assessing the bounds bounds = 0 means an unconstrained problem bounds = 1 means the same lower bounds for all unknowns and the same upper bounds for all unknowns.
- bounds - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
integer scalar code for assessing the bounds bounds = 0 means an unconstrained problem bounds = 1 means the same lower bounds for all unknowns and the same upper bounds for all unknowns.
- bounds - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- bounds - Variable in class gov.nih.mipav.model.file.jxlatte.Frame
- bounds - Variable in class gov.nih.mipav.model.file.jxlatte.FrameHeader
- bounds - Variable in class gov.nih.mipav.model.file.jxlatte.Patch
- bounds - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Mesh
- bounds - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
A BoundingSphere that contains the entire scene.
- bounds - Variable in class gov.nih.mipav.view.ViewJComponentGraph
-
DOCUMENT ME!
- bounds - Variable in class gov.nih.mipav.view.ViewJComponentGraphAxes
-
DOCUMENT ME!
- Bounds() - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.Bounds
- bounds_lower - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- bounds_type - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- bounds_upper - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- boundsConstrained() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow
-
DOCUMENT ME!
- boundsForText(int, int, int) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
-
Calls
ContourPlot.CharacterAtlas.boundsForText(int, Font)with corresponding Ubuntu Mono font. - boundsForText(int, Font) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
-
Calculates the bounding rectangle for a specific number of characters in the specified font.
- boundUB - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The upper blue bound of the exclusion
- boundUG - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The upper green bound of the exclusion
- boundUR - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
The upper red bound of the exclusion
- box - Enum constant in enum gov.nih.mipav.model.structures.Voro.c_loop_subset_mode
- box - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainExtractor
-
DOCUMENT ME!
- box - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
-
DOCUMENT ME!
- box - Variable in class gov.nih.mipav.model.file.FilePolylineVOIXML
- box - Variable in class gov.nih.mipav.view.dialogs.JDialogPointArea.JTextFieldFilter
-
DOCUMENT ME!
- box - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelClodMesh
-
DOCUMENT ME!
- box - Static variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
DOCUMENT ME!
- box - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FilePolyline_WM
-
DOCUMENT ME!
- box - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurface_WM
-
image volume bounding box.
- box() - Constructor for class gov.nih.mipav.model.file.libjpeg.box
- Box(int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
-
Called by CreateBox.
- BOX_3D - Variable in class gov.nih.mipav.model.algorithms.Lmmin
- BOX_3D - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BOX_3D - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BOX_C0_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C0_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C0_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C1_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C1_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C1_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C2_ELEMS - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C2_LOG - Variable in class gov.nih.mipav.model.file.libjpeg
- BOX_C2_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
- box_cut() - Method in class gov.nih.mipav.model.structures.Voro
- box_x - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
-
invalid input: '<' vector of all patches, corresponding to loc.
- box_y - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
-
invalid input: '<' bounding box (x) for patch locations (top-left corner).
- box_z - Variable in class gov.nih.mipav.model.algorithms.libdt.PatchBatchExtractor
-
invalid input: '<' bounding box (y) for patch locations.
- Box3 - Class in gov.nih.mipav.view.renderer.WildMagic.BallPivoting
- Box3() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- Box3(Box3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- Box3(Point3, float) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- Box3(Point3, Point3) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- Box3DFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.Box3DFunction
- boxA - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Static and static inverse, arbitrary clipping plane check box.
- BoxBODCostFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest.BoxBODCostFunction
- BoxBODData - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
- BoxBODObservations - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
- boxBounds - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- boxCount2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
- boxCount3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
- boxCountAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBoxCount
-
DOCUMENT ME!
- boxCountBoundary2D(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
- boxDialog - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter
-
Dialog for recording and playing back mouse events.
- boxdiv2(byte[][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
- boxdiv3(byte[][][], double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBoxCount
- boxes - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizePresets
- boxfilter(double[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGuidedFilter
- boxFrame - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
The outside box frame.
- boxHeight - Variable in class gov.nih.mipav.view.BarMeter
-
DOCUMENT ME!
- boxHeight - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
-
Width and height of zoom box
- boxIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
-
DOCUMENT ME!
- boxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
- boxPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Dialog to turn bounding box of surface renderer on and off, and to change the color of the frame.
- boxSize - Variable in class gov.nih.mipav.model.file.jxlatte.Demuxer
- boxSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
The frame around the AXIAL, CORONAL, SAGITTAL slices:
- boxSlices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
The frame around the AXIAL, CORONAL, SAGITTAL slices:
- boxSliceVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
The transformed boxSlices frames used to sample the volume data along diagonal slices:
- boxSliceVertices - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
The transformed boxSlices frames used to sample the volume data along diagonal slices:
- boxSliceX - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.VolumeRenderer
-
The frame around the x slice.
- boxStatic - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Static and static inverse, arbitrary clipping plane check box.
- boxStaticInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Static and static inverse, arbitrary clipping plane check box.
- BoxToIBox(Box3, Box3) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.BasicGrid
- boxWidth - Variable in class gov.nih.mipav.view.BarMeter
-
DOCUMENT ME!
- boxWidth - Variable in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
-
Width and height of zoom box
- boxx - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The size of a computational block in the x direction.
- boxx - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
-
The size of a computational block in the x direction.
- boxx - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_poly_radius_poly
-
The size of an internal computational block in the x direction.
- boxx - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_radius_mono
-
The size of an internal computational block in the x direction.
- boxx - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_poly_radius_poly
-
The size of an internal computational block in the x direction.
- boxx - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_radius_mono
-
The size of an internal computational block in the x direction.
- boxX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check boxes that turn the image plane and the sliders on and off.
- boxX - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Check boxes that turn the image plane on and off.
- boxX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Check boxes that turn the image plane on and off.
- boxXInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check boxes that turn the image plane and the sliders on and off.
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- boxXmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- boxXmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- boxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The size of a computational block in the y direction.
- boxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
-
The size of a computational block in the y direction.
- boxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_poly_radius_poly
-
The size of an internal computational block in the y direction.
- boxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_radius_mono
-
The size of an internal computational block in the y direction.
- boxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_poly_radius_poly
-
The size of an internal computational block in the y direction.
- boxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_radius_mono
-
The size of an internal computational block in the y direction.
- boxY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check boxes that turn the image plane and the sliders on and off.
- boxY - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Check boxes that turn the image plane on and off.
- boxY - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Check boxes that turn the image plane on and off.
- boxYInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check boxes that turn the image plane and the sliders on and off.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
-
Cropped image region.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
cropped image boundary info.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
cropped image boundary.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
-
bounding box for crop the image.
- boxYmax - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
-
Cropped image region.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
cropped image boundary info.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
cropped image boundary.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
-
bounding box for crop the image.
- boxYmin - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
-
bounding box for crop the image.
- boxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The size of a computational block in the z direction.
- boxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_wall_list
-
The size of a computational block in the z direction.
- boxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_poly_radius_poly
-
The size of an internal computational block in the z direction.
- boxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_radius_mono
-
The size of an internal computational block in the z direction.
- boxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_poly_radius_poly
-
The size of an internal computational block in the z direction.
- boxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_radius_mono
-
The size of an internal computational block in the z direction.
- boxZ - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check boxes that turn the image plane and the sliders on and off.
- boxZ - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Check boxes that turn the image plane on and off.
- boxZ - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Check boxes that turn the image plane on and off.
- boxZInv - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Check boxes that turn the image plane and the sliders on and off.
- bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t
-
pointer to the present position in the buffer
- bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
- bp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t
-
pointer to the current position in the buffer
- bpconv(double[], int, double[], double[], int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- BPLIST_HEADER - Static variable in class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
- BplistReader() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.BplistReader
- bpp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_cmptparm_t
-
image depth in bits
- bpp - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_image_comp_t
-
image depth in bits
- bps - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGComponentInputStream
- bps - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGInputStream
- bps - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGComponentInputStream
- bps - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGInputStream
- bpsconv(double[], int, double[], double[], int, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRiceWaveletTools
- bpser(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- bPtr - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Buffer pointer (aka file pointer).
- BQCOF - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- bqmScale - Variable in class gov.nih.mipav.model.file.jxlatte.FrameHeader
- br - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- br - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
- br - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
- BR - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Square
- bracketBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstELSUNCOpt3D
-
The initial bracket size for first iteration of ELSUNC.
- bracketBound - Variable in class gov.nih.mipav.model.algorithms.AlgorithmConstPowellOptBase
-
The initial bracket size for first iteration of Powell.
- bracketBound - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Sets minimum and maximum limits as initial guess -+ unit_tolerance[i]*bracketBound.
- bracketBound - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
The bracket size around the minimum in multiples of unit_tolerance in the first iteration of Powell's algorithm.
- bracketBound - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- bracketBound - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
-
DOCUMENT ME!
- bracketBound_def - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- bracketBound_def - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
-
DOCUMENT ME!
- bracketBoundText - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- bracketBoundText - Variable in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
-
DOCUMENT ME!
- BracketingPhase(CeresSolver.FunctionSample, double, CeresSolver.FunctionSample, CeresSolver.FunctionSample, boolean[], CeresSolver.LineSearchSummary) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.WolfeLineSearch
- BRADFORD - Variable in class gov.nih.mipav.model.file.jxlatte.ColorManagement
- BRADFORD_INVERSE - Variable in class gov.nih.mipav.model.file.jxlatte.ColorManagement
- BRADLEY_FAYYAD_INIT - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- BRADLEY_FAYYAD_INIT - Static variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- BradleyInit - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- brainMask - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
-
Denotes which pixels undergo SWI processing.
- brainRegionSize - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
The size of the region we have identified as the brain.
- brainRegionThresholdRatio - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
The proportion of the total number of pixels in the volume that a region should be before we decide that it's probably the brain.
- BRAINSURFACE_FLATTENER - Static variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
DOCUMENT ME!
- brainsurfaceFlattenerRender - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Rendering the brainsurfaceFlattener objects.
- brainsurfaceFlattenerRender - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Rendering the brainsurfaceFlattener objects.
- branchButton - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
DOCUMENT ME!
- branchingFactor - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlyPathBehavior.BranchState
-
Constructor.
- BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyPathBehavior_WM.BranchState
-
Constructor.
- BranchState(int, FlyPathGraphCurve) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior.BranchState
-
Constructor.
- bratio(double, double, double, double, double[], double[], int[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- brcmp1(int, double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- brcomp(double, double, double, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- breadth_first_search() - Method in class gov.nih.mipav.model.algorithms.LSCM.Graph
- breakDownArea - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
- breakPoints - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
Used in dqagpe This array must always be >= 2 in length.
- breakPoints - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
Used in dqagpe This array must always be >= 2 in length.
- breakSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
Defaults to the maximum buffer size in streaming.
- breal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquation
- breal - Variable in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- brickFloatFacs - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- brickKeywordsString - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- brickLabsString - Variable in class gov.nih.mipav.model.file.FileAfni
-
Sub-brick names
- brickLabsString - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
Name for each sub-brick
- brickStatAux - Variable in class gov.nih.mipav.model.file.FileAfni
-
Each BLT is defined by a struct that contains two 3x3 matrices and four 3-vectors (2*3*3 + 4*3 = the 30 numbers).
- brickStatAux - Variable in class gov.nih.mipav.model.file.FileInfoAfni
-
DOCUMENT ME!
- brickStats - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- brickType - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- brickTypeNumber - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- BriefReport() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverSummary
- BriefReport() - Method in class gov.nih.mipav.model.algorithms.CeresSolver.SolverSummary
- bright_on_dark - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSER
- bright_on_dark - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
- brightness - Variable in class gov.nih.mipav.model.file.FileImageXML.Thumbnail
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.model.file.FileSVS
- brightness - Variable in class gov.nih.mipav.model.file.FileTiff
- brightness - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.ViewImageDirectory
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.ViewJComponentAnimate
-
offset ranging from -255 to 255 add to each scaled red, green, and blue
- brightness - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationEM
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.ViewJComponentPreviewImage
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.ViewJFilterAnimate
-
DOCUMENT ME!
- brightness - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
DOCUMENT ME!
- brightness() - Method in class gov.nih.mipav.view.ViewJFilterAnimate
-
DOCUMENT ME!
- brightness(int) - Method in class gov.nih.mipav.view.ViewJFilterAnimate
-
DOCUMENT ME!
- brightnessBuffer - Variable in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmDeconvolution
-
buffer for storing the original maximum of the OpenCL buffer
- brightnessContrastPanel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
DOCUMENT ME!
- brightnessLevel - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
a pixel (no matter whether represented as a float or int), has a brightnessLevel, which is in the histogram as a value between 0 and totalBins.
- brightnessSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogBrightness
-
DOCUMENT ME!
- brightnessSlider - Variable in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
DOCUMENT ME!
- brightnessSlider - Variable in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- brightnessTable - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
DOCUMENT ME!
- brightOnDarkCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogMSER
- brightPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
DOCUMENT ME!
- brightPanel - Variable in class gov.nih.mipav.view.ViewImageDirectory
-
DOCUMENT ME!
- brightSlider - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
DOCUMENT ME!
- brightSlider - Variable in class gov.nih.mipav.view.ViewImageDirectory
-
DOCUMENT ME!
- brightThres - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
DOCUMENT ME!
- brikDataType - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- brikFileName - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- bringToFront(String) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
Checks whether or not the dialog exists; if it does, it brings the dialog to front.
- bringToFront(String, Hashtable<String, JDialogEditor>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfo
-
checks whether or not the dialog exists; if it does, it brings the dialog to front.
- bringToFront(String, Hashtable<String, JDialogEditor>) - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoXML
-
checks whether or not the dialog exists; if it does, it brings the dialog to front.
- BriskDescriptorExtractor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
- BriskLayer(AlgorithmBRISK.BriskLayer, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
- BriskLayer(ModelImage) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLayer
- BriskLongPair() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskLongPair
- BriskPatternPoint() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskPatternPoint
- briskScaleSpace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBRISK
- BriskShortPair() - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmBRISK.BriskShortPair
- BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.Lmmin
- BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.NESolve
- BROWN_ALMOST_LINEAR - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.Lmmin
- BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BROWN_AND_DENNIS - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BROWN_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BROWN_BADLY_SCALED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BrownAndDennisFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownAndDennisFunction
- BrownBadlyScaledFunction() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest.BrownBadlyScaledFunction
- BROWSE - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
- BROWSE - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI
-
DOCUMENT ME!
- browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImage
-
DOCUMENT ME!
- browseButton - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadImageForRegistration
-
DOCUMENT ME!
- browseButton - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
DOCUMENT ME!
- browseDWIButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- browseOutputButton - Variable in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI
-
DOCUMENT ME!
- browser - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
-
File chooser for the user to select an existing file for attachment
- brox_optic_flow(double[], double[], double[], double[], int, int, double, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
-
Compute the optic flow with the Brox spatial method
- brox_optic_flow(double[], double[], double[], double[], int, int, double, double, int, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.SpatialBroxOpticalFlow
-
Multiscale approach for computing the optical flow
- brox_optic_flow(double[], double[], double[], int, int, int, double, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
-
Compute the optic flow with the Brox temporal method
- brox_optic_flow(double[], double[], double[], int, int, int, double, double, int, double, double, int, int, boolean) - Method in class gov.nih.mipav.model.algorithms.TemporalBroxOpticalFlow
-
Multiscale approach for computing the optical flow
- broxAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
- broxAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
- BROYDEN_BANDED - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BROYDEN_BANDED - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BROYDEN_TRIDIAGONAL - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- BROYDEN_TRIDIAGONAL - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- BRUKER - Static variable in class gov.nih.mipav.model.file.FileUtility
-
Bruker file format.
- BruteForce(ComputationalGeometry.MyVector2, ComputationalGeometry.HalfEdgeData2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.PointTriangulationIntersection
- bruteForceCheckBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
CheckBox to turn brute-force registration on or off:.
- bruteForceDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Dialog to set the brute-force registration parameters:.
- Bs - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- bs_size - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- Bs2 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
- bsBuff - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- bsBuff - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- bsFinishedWithStream() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bsFinishedWithStream() - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- bsGetint() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bsGetInt32() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bsGetIntVS(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bsGetUChar() - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bside - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
- bsLive - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- bsLive - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- BSPENCE - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bspline(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Performs bspline interpolation on black and white image data.
- bSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmArcLength
-
DOCUMENT ME!
- bSpline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
- Bspline - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
DOCUMENT ME!
- BSPLINE - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
- bSpline2D(int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
- bSpline2DC(int, int, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
- BSPLINE3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
Cubic bspline interpolation.
- BSPLINE3 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Cubic bspline interpolation.
- bSpline3D(int, int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
- bSpline3DC(int, int, int, double, double, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method is out of date, as it provides smoothed interpolation as opposed to precise interpolation.
- BSPLINE4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTalairachTransform
-
Quadratic bspline interpolation.
- BSPLINE4 - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Quadratic bspline interpolation.
- bspline4D(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Performs bspline interpolation on black and white image data in 4D image.
- BSplineButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBSmooth
- bsplineC(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Performs bspline interpolation on color image data.
- bsplineC4D(ModelImage, ModelImage, int, TransMatrix, ViewJProgressBar) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
Performs bspline interpolation on color image data in 4D image.
- BSplineControlPointImageFilterTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
- BsplineCurve(Vector3f[], int, int, int, Vector<Vector3f>) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManager
-
Compute Bspline segment
- BSplineEpsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter
- BSplineEpsilon - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineScatteredDataPointSetToImageFilter
- bSplineJet1D(byte, float, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method can also be used to calculate derivatives of the Bspline.
- bSplineJetXY(int, float, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method can also be used to calculate derivatives of the Bspline.
- bSplineJetXYZ(int, float, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method can also be used to calculate derivatives of the Bspline.
- bSplineJetXYZ_double(int, float, float[], float[], float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSpline
-
This method can also be used to calculate derivatives of the Bspline.
- BSplineKernelFunction - Class in gov.nih.mipav.model.structures
- BSplineKernelFunction() - Constructor for class gov.nih.mipav.model.structures.BSplineKernelFunction
- BSplineKernelFunction(int) - Constructor for class gov.nih.mipav.model.structures.BSplineKernelFunction
- BSplineKernelFunctionTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
- BSplineLattice2Df - Class in gov.nih.mipav.model.structures
-
This class manages a 2D lattice of control points given a discretized B-Spline basis for each axis.
- BSplineLattice2Df(BSplineBasisDiscretef, BSplineBasisDiscretef) - Constructor for class gov.nih.mipav.model.structures.BSplineLattice2Df
-
Create 2D lattice of control points given a discretized B-Spline basis for each axis.
- BSplineLattice3Df - Class in gov.nih.mipav.model.structures
-
This class manages a 3D lattice of control points given a discretized B-Spline basis for each axis.
- BSplineLattice3Df(BSplineBasisDiscretef, BSplineBasisDiscretef, BSplineBasisDiscretef) - Constructor for class gov.nih.mipav.model.structures.BSplineLattice3Df
-
Create 3D lattice of control points given a discretized B-Spline basis for each axis.
- BSplineRegistration2Df - Class in gov.nih.mipav.model.algorithms.registration
-
This class is used to register a 2D source image to a 2D target image.
- BSplineRegistration2Df(ModelSimpleImage, ModelSimpleImage, BSplineBasisf, BSplineBasisf, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistration2Df
-
Create instance to be used for registration.
- BSplineRegistration3Df - Class in gov.nih.mipav.model.algorithms.registration
-
This class is used to register a 3D source image to a 3D target image.
- BSplineRegistration3Df(ModelSimpleImage, ModelSimpleImage, BSplineBasisf, BSplineBasisf, BSplineBasisf, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistration3Df
-
Create instance to be used for registration.
- BSplineRegistrationBasef - Class in gov.nih.mipav.model.algorithms.registration
-
This is a common base class for all BSpline-based registrations.
- BSplineRegistrationBasef(ModelSimpleImage, ModelSimpleImage, RegistrationMeasure) - Constructor for class gov.nih.mipav.model.algorithms.registration.BSplineRegistrationBasef
-
Create instance to be used for registration.
- BSplineScatteredDataPointSetToImageFilterTest - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
- BSplineScatteredDataPointSetToImageFilterTest2 - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
- BSplineShapeFunctions - Variable in class gov.nih.mipav.model.structures.CoxDeBoorBSplineKernelFunction
- bsPutint(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- bsPutIntVS(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- bsPutUChar(int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- bsR(int) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bsSetStream(InputStream) - Method in class gov.nih.mipav.model.file.CBZip2InputStream
- bsSetStream(OutputStream) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- bsStream - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- bsStream - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- bstate - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
- bSubsample - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline.Options
-
Boolean flag set to true to indicate whether the registration is performed to a subsampled target image.
- bsW(int, int) - Method in class gov.nih.mipav.model.file.CBZip2OutputStream
- bt - Variable in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction
-
DOCUMENT ME!
- BT - Variable in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.StaticGrid
- bTableSize - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
DOCUMENT ME!
- btArrayList - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
-
this is the array list of the texts on the buttons
- BtB_method - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- btdtr(double, double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- BTDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- bText - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- btnAdd - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel
-
DOCUMENT ME!
- btnGpuComp - Variable in class gov.nih.mipav.view.ViewUserInterface
-
The button indicating that MIPAV is set to run OpenCL -- GPU based algorithms
- btnInvisible - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
DOCUMENT ME!
- btnMoveDown - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel
-
DOCUMENT ME!
- btnMoveUp - Variable in class gov.nih.mipav.view.ViewDICOMDoubleListPanel
-
DOCUMENT ME!
- btnMultiCore - Variable in class gov.nih.mipav.view.ViewUserInterface
-
The button indicating that MIPAV is set to run in a threaded environment
- btnRemove - Variable in class gov.nih.mipav.view.ViewSelectableDoubleListPanel
-
DOCUMENT ME!
- btol - Variable in class gov.nih.mipav.model.algorithms.LSQR.lsqr_solver_ez
- btrack - Variable in class gov.nih.mipav.model.algorithms.NESolve
- btrunc(int[], boolean, double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- btrunc(int[], boolean, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- bu - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- bu - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- bu0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- bu0 - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- bucketMask - Variable in class gov.nih.mipav.model.file.jxlatte.ANSSymbolDistribution
- BucketSort(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
- BucketSortCroiss(int[], int[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPowerWatershed
- buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Keypoint_store
- buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.SIFT3D_Descriptor_store
- buf - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
- buf - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_bio_t
-
temporary place where each byte is read or written
- buf - Variable in class gov.nih.mipav.model.file.FileSVS.BitInputStream
- buf - Variable in class gov.nih.mipav.model.file.FileTiff.BitInputStream
- buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAW
-
The line buffer.
- buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWSlice
-
The line buffer.
- buf - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
-
The line buffer.
- buf_size - Variable in class gov.nih.mipav.model.algorithms.SIFT3D.Slab
- buff - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
- buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEntropyMinimization
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFacetModel
- buffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
Buffer for original source image.
- buffer - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
- buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- buffer - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
- buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.file.charls.jpeg_test_stream_writer
- buffer - Variable in class gov.nih.mipav.model.file.FileDicomJPEG.HuffTable
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
- buffer - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t
-
buffer - not included in original class
- buffer - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGACInputStream
- buffer - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGACInputStream
- buffer - Variable in class gov.nih.mipav.model.file.jxlatte.Frame
- buffer - Variable in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- buffer - Variable in class gov.nih.mipav.model.file.jxlatte.JXLImage
- buffer - Variable in class gov.nih.mipav.model.file.jxlatte.ModularChannel
- buffer - Variable in class gov.nih.mipav.model.file.jxlatte.PNGWriter
- buffer - Variable in class gov.nih.mipav.model.file.jxlatte.PushbackInputStream
- buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
- buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
- buffer - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse
-
DOCUMENT ME!
- buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
- buffer - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- buffer_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
- buffer_full - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
- buffer_gc - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- buffer_gc - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- buffer_index - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
- buffer_index - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
- buffer_layout - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.Chunk
- BUFFER_SIZE - Static variable in class gov.nih.mipav.model.file.FileDicomBase
-
The size of the buffer that contains the tags of the DICOM image.
- buffer_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.ProductParameterization
- buffer_size_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SchurEliminator
- buffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
-
DOCUMENT ME!
- buffer2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans
-
DOCUMENT ME!
- buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
- buffer8 - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
- buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_main_controller
- buffer9to12 - Variable in class gov.nih.mipav.model.file.libjpeg.my_post_controller
- bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- bufferA - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- BufferBase - Class in gov.nih.mipav.model.structures
-
This is an abstract buffer class that indicates the required methods of the sub-classes.
- BufferBase() - Constructor for class gov.nih.mipav.model.structures.BufferBase
- bufferBitSet - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- BufferBoolean - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferBoolean() - Constructor for class gov.nih.mipav.model.structures.BufferBoolean
-
Default constructor.
- BufferBoolean(int) - Constructor for class gov.nih.mipav.model.structures.BufferBoolean
-
Constructor that allocates memory.
- BufferBoundsException(int, int, long) - Constructor for exception class gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
- BufferBoundsException(String) - Constructor for exception class gov.nih.mipav.model.file.MetadataExtractor.BufferBoundsException
- bufferBrain(BitSet, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizerBET
-
Appends the given
brainMaskTempbymmToPadin pixels in all directions. - bufferBW - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection
- bufferByte - Variable in class gov.nih.mipav.model.file.FileNIFTI
-
A byte array of the size of the NIFTI header + 4 extension bytes.
- bufferByte - Variable in class gov.nih.mipav.model.file.FilePackBit
-
Buffer used to store image of type byte.
- bufferByte - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- bufferByte - Variable in class gov.nih.mipav.model.file.FileSPM
-
DOCUMENT ME!
- BufferByte - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferByte() - Constructor for class gov.nih.mipav.model.structures.BufferByte
-
Default constructor.
- BufferByte(int) - Constructor for class gov.nih.mipav.model.structures.BufferByte
-
Constructor that allocates memory.
- bufferByte2 - Variable in class gov.nih.mipav.model.file.FilePackBit
-
Second buffer used to store image of type byte.
- bufferData - Variable in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter.SliceTransferable
- bufferDouble - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- BufferDouble - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferDouble() - Constructor for class gov.nih.mipav.model.structures.BufferDouble
-
Default constructor.
- BufferDouble(int) - Constructor for class gov.nih.mipav.model.structures.BufferDouble
-
Constructor that allocates memory.
- buffered_image - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- BufferedImageFactory() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.BufferedImageFactory
- bufferFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
DOCUMENT ME!
- bufferFactor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Buffer factor, 1 usually, 4 for color images.
- bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- bufferFactor - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
1 for black and white, 4 for color.
- bufferFloat - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- BufferFloat - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferFloat() - Constructor for class gov.nih.mipav.model.structures.BufferFloat
-
Default constructor.
- BufferFloat(int) - Constructor for class gov.nih.mipav.model.structures.BufferFloat
-
Constructor that allocates memory.
- bufferImageHeader - Variable in class gov.nih.mipav.model.file.FileAnalyze
-
Storage buffer for the header.
- bufferInt - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- BufferInt - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferInt() - Constructor for class gov.nih.mipav.model.structures.BufferInt
-
Default constructor.
- BufferInt(int) - Constructor for class gov.nih.mipav.model.structures.BufferInt
-
Constructor that allocates memory.
- bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- bufferIW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- bufferLong - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- BufferLong - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferLong() - Constructor for class gov.nih.mipav.model.structures.BufferLong
-
Default constructor.
- BufferLong(int) - Constructor for class gov.nih.mipav.model.structures.BufferLong
-
Constructor that allocates memory.
- bufferPos - Variable in class gov.nih.mipav.model.file.jxlatte.PushbackInputStream
- bufferReader - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.ShapeSimilarity.ShapeSimilarity
- bufferShort - Variable in class gov.nih.mipav.model.file.FilePackBit
-
Buffer used to store image of type short or unsigned byte.
- bufferShort - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- BufferShort - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferShort() - Constructor for class gov.nih.mipav.model.structures.BufferShort
-
Default constructor.
- BufferShort(int) - Constructor for class gov.nih.mipav.model.structures.BufferShort
-
Constructor that allocates memory.
- bufferSize - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer
-
The total capacity of the buffer.
- bufferSize - Variable in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.model.file.FileBFLOAT
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.model.file.FileBioRad
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.model.file.FileICS
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.model.file.FileInterfile
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.model.file.FilePackBit
-
Size of buffer to be allocated.
- bufferSize - Variable in class gov.nih.mipav.model.file.FileRawChunk
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- bufferSize - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- bufferToInt16(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
Copies a 2 byte array into a 16 bit integer of proper endianess.
- bufferToInt32(byte[], int, int) - Static method in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
Copies a 4 byte array into a 32 bit integer of proper endianess.
- bufferType - Variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Type of image buffer (i.e.
- bufferTypeStr - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Deprecated.should use enums directly
- BufferUByte - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferUByte() - Constructor for class gov.nih.mipav.model.structures.BufferUByte
-
Default constructor.
- BufferUByte(int) - Constructor for class gov.nih.mipav.model.structures.BufferUByte
-
Constructor that allocates memory for the buffer.
- BufferUInt - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferUInt() - Constructor for class gov.nih.mipav.model.structures.BufferUInt
-
Default constructor.
- BufferUInt(int) - Constructor for class gov.nih.mipav.model.structures.BufferUInt
-
Constructor that allocates memory.
- BufferUShort - Class in gov.nih.mipav.model.structures
-
This class extends the abstract BufferBase class.
- BufferUShort() - Constructor for class gov.nih.mipav.model.structures.BufferUShort
-
Default constructor.
- BufferUShort(int) - Constructor for class gov.nih.mipav.model.structures.BufferUShort
-
Constructor that allocates memory.
- bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
DOCUMENT ME!
- bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
DOCUMENT ME!
- bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
DOCUMENT ME!
- bufferW - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
DOCUMENT ME!
- bufferWrite - Variable in class gov.nih.mipav.model.file.FileAvi
-
DOCUMENT ME!
- bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
DOCUMENT ME!
- bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
maximum of the image buffer.
- bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
DOCUMENT ME!
- bufMax - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
-
DOCUMENT ME!
- bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
DOCUMENT ME!
- bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
minimum of the image buffer.
- bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
DOCUMENT ME!
- bufMin - Variable in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
-
DOCUMENT ME!
- BUG_MAIL_URL - Static variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
-
URL of the page we use to actually send the bug report email.
- BugType(String) - Constructor for enum gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder.BugType
- bugTypeComboBox - Variable in class gov.nih.mipav.view.dialogs.reportbug.ReportBugBuilder
- build - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
- build_3D_group(Vector<Vector<double[][]>>, int[][], int) - Method in class gov.nih.mipav.model.algorithms.filters.BM3D
- build_bg_ycc_rgb_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
- build_dog(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- build_gpyr(SIFT3D.SIFT3DC) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- build_intersection_table(GenericPolygonClipper.it_node[], GenericPolygonClipper.edge_node, double) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- build_lmt(GenericPolygonClipper.lmt_node[], GenericPolygonClipper.sb_tree[], int[], VOIBaseVector, int, GenericPolygonClipper.gpc_op) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- build_rgb_y_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
- build_sbt(int[], double[], GenericPolygonClipper.sb_tree) - Method in class gov.nih.mipav.model.structures.GenericPolygonClipper
- build_ycc_rgb_table(libjpeg.jpeg_decompress_struct) - Method in class gov.nih.mipav.model.file.libjpeg
- build3DMousePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the clipping control panel for the surface render.
- build3DVOIToolBar(JToolBar, int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
- buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
-
Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
- buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
-
Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
- buildActiveImagePanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds the active image panel for choosing which image (A, B, or BOTH) to perform operations on.
- buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
Build advanced settings dialog.
- buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Build advanced settings dialog.
- buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
Build advanced settings dialog.
- buildAdvancedDialog(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
Build advanced settings dialog.
- buildAdvancedDialog(int, int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions
-
Build advanced settings dialog.
- buildAdvancedDialog(int, int, int, boolean, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
Build advanced settings dialog.
- BuildAllLevels(int, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS
-
Wrapper for automate model generation.
- BuildAllLevels(int, String, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS
-
Driver method for model generation.
- BuildAllLevels(int, Vector<String>, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS
-
Driver method for model generation.
- buildAlphaSlider() - Method in class gov.nih.mipav.view.ViewControlsImage
-
Builds the slider used to control the alpha blending.
- buildAnchorPane() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
- buildAnimateToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
Method to build the toolbar for the Animate frame.
- buildAnimateToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
Method to build the toolbar for the Animate frame.
- buildAnnotationTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelLattice
-
Creates the table that displays the annotation information.
- buildAnnotationTable(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
-
Creates the table that displays the annotation information.
- buildAnonDirectoryDialog() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds the anonymize directory dialog and displays it.
- buildApplyButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds the cancel button.
- buildApplyButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Builds the cancel button.
- buildBasicLUTToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Builds a toolbar with just the basic lut buttons on it.
- buildBasicTableModel() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
- buildBlendPanel() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Build the blend slider control panel.
- buildBlendPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacityBase
-
Deprecated.Build the blend slider control panel.
- buildBlurringPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
part of the algorithm rests on blurring the original image.
- buildBoneBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
Build the bone ( yellow sphere ) branch group image scene graph.
- buildBoundingBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Build the boudning box for X, Y, Z slices.
- buildBoundingBox() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Build the boudning box for X, Y, Z slices.
- buildBoundsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- buildBrainsurfaceFlattener() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the Brainsurface Flattener panel:
- buildBrightContPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
Initializes GUI components and displays dialog.
- buildBrightContPanel() - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Initializes GUI components and displays dialog.
- buildBrightnessContrastPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
Initializes GUI components and displays dialog.
- buildBrightnessContrastPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildBruteForceDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Builds the bruteForceDialog so the user can set the brute-force registration parameters:
- buildBurnPackingPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
- buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Build the image scene graph structure.
- buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView
-
Build the image scene graph structure.
- buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView
-
Build the image scene graph structure.
- buildBurnSceneGraph(float, float) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView
-
Build the image scene graph structure.
- buildBurnSceneGraph(float, float, Color3f, int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Only used by the default burning point type to reset the image sence graph when the burning sphere radius and time changes.
- buildBurnVisPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the tab containing the color, opac, picking, labels, etc for burns.
- buildButton(CustomUIBuilder.UIParams) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Creates a JButton using a UIParams parameters
- buildButton(String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Create a new toolbar button.
- buildButtonPanel() - Method in class gov.nih.mipav.view.ViewJFrameRegisteredImages
- buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds button panel consisting of OK, Cancel and Help buttons.
- buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
-
Creates an OK Button, which is relabeled "Save", an "Ignore" button, a "Cancel" and a "Help" button.
- buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Builds button panel consisting of OK, Cancel and Help buttons.
- buildButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
-
Builds button panel consisting of OK, Cancel and Help buttons.
- buildButtons() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Builds button panel consisting of OK, Cancel and Help buttons.
- buildButtons() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
-
Builds button panel consisting of OK, Cancel and Help buttons.
- buildButtons(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMemoryAllocation
-
creates the buttons, USE PREFERENCES, OKAY, CANCEL, and HELP.
- buildButtons(GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Builds the close button.
- buildCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Build the camera snap shot panel.
- buildCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the camera control panel for the surface render.
- buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds the cancel button.
- buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Builds the cancel button.
- buildCancelButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
-
Builds the cancel button.
- buildCancelButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Builds the cancel button.
- buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase
-
Builds the cancel button.
- buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Builds the cancel button.
- buildCancelButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
-
Builds the cancel button.
- buildCancelButton(String, ActionListener) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
- buildCenterPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildCheckBox(String, boolean) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a new check box component.
- buildCheckBox(String, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildCheckBox(String, boolean, ItemListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a new check box component.
- buildCheckBoxMenuItem(String, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder
-
Builds a JCheckBox with the given parameters and adds it to the Vector of menu items.
- buildCheckBoxMenuItem(String, String, ActionListener, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder
-
Static method for building JCheckBoxes with the given parameters.
- buildCheckBoxPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
- buildCirclePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
- buildClamping(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
controls the entire creation of the clamping panel and all controls related to the display of the clamping parameter. places the clamping panel into the holder panel.
- buildClipPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the clipping control panel for the surface render.
- buildClipPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the clipping control panel for the surface render.
- buildClipPlanesTree() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build cliping planes tree structure.
- buildCloseButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds the close button.
- buildCloseButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Builds the close button.
- buildColocalizeToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM
-
Method to build the toolbar for the Animate frame.
- buildColocalizeToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
Method to build the toolbar for the Animate frame.
- buildColorMap() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
Builds which cells to display as light blue and green.
- buildColorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
part of the algorithm rests on finding the original image minus an estimation of the local mean.
- buildColorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
builds the controls to set the color of the border the and color of the background.
- buildColorTable(Vector<File>) - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin
-
Attempted to find dependencies of used files after they were temporarily added to the class path (included unpacking jars)
- buildColourPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
makes the panel to allow user selection of colour channels to filter. nothing editable when image not in ARGB or ARGB_USHORT or ARGB_UINTEGER or ARGB_FLOAT
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
-
Builds kernel combo box.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat
-
buildComboBox.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogClose
-
buildComboBox.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate
-
Builds kernel combo box.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogErode
-
Builds kernel combo box.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the ComboBox panel editing units of measure.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
Builds a list of images to register to the template image.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
Builds a list of images to register to the template image.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
-
Builds kernel combo box.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
-
Builds kernel combo box.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
-
buildComboBox.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen
-
buildComboBox.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
-
Builds kernel combo box.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
Builds a list of images to register to the template image.
- buildComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat
-
buildComboBox.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRET
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
Builds a list of images.
- buildComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR
-
Builds a list of images.
- buildComboBox(String, Object[]) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildComboBox(String, Object[], int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat
-
Builds a list of images to concatenate to image A.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
-
Builds a list of images to operate on from the source image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
-
Builds a list of images to operate on from the source image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogTriFrameLinker
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
-
Builds a list of images to operate on from the source image.
- buildComboBoxImage() - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
-
Builds a list of images to operate on from the template image.
- buildComboBoxImage(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
Builds a list of images to register to the template image.
- buildConnections() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
Builds a list of cross-references, so that connections[i] contains all the verticies that are connected to vertex at i.
- buildConnections() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
-
Builds a list of cross-references, so that connections[i] contains all the vertices that are connected to vertex at i.
- buildContentPane(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogServer
-
Builds the content pane for the dialog, making the text fields and labels.
- buildControlPanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
Creates the mouse control panels.
- buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Build the light control panel.
- buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Builds panel that has 3 sliders for the 3 planes shown, 3 checkboxes for showing the planes, 3 text boxes for the current values of the sliders, and a fourth slider and text box for the time dimension, if necessary.
- buildControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter
-
Panel that has a slider for the image.
- buildControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
-
Build the light control panel.
- buildControlPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Builds panel that has 3 sliders for the 3 planes shown, 3 checkboxes for showing the planes, 3 text boxes for the current values of the sliders, and a fourth slider and text box for the time dimension, if necessary.
- buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
Panel that sets the at rest frame number and the desired frames per second and reports the actual frames per second.
- buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
Panel that sets the at rest frame number and the desired frames per second and reports the actual frames per second.
- buildControlPanel() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
panel that sets the at rest frame number and the desired frames per second.
- buildControlPanel(boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
panel that sets the at rest frame number and the desired frames per second.
- buildControlPanel(ModelImage, boolean) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Builds the interface panel.
- buildConventionalTabs() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
-
This method builds the conventional tabs based on possibly pre-defined values.
- buildConventionalTreT1Panel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildCubicBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Create the rotation control cubic box.
- buildCubicBox() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Create the rotation control cubic box.
- buildCubicBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceRender
-
Build the cubic branch under the objRootBG.
- buildCubicBranch() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceView
-
Build the cubic branch under the objRootBG.
- buildCursors() - Static method in class gov.nih.mipav.view.MipavUtil
-
DOCUMENT ME!
- buildCurveTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelCurves
-
Creates the table that displays the annotation information.
- buildCustomBlendPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- buildCustomToolBar(Vector<CustomUIBuilder.UIParams>) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
- buildDatePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the panel that designed for inputing study duration information.
- buildDecimalField(String, double) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildDefaultFonts() - Static method in class gov.nih.mipav.view.MipavUtil
-
This should only be called once when MIPAV starts, and then if the user changes the font options through Program Options to rebuild the fonts used in GUI building.
- buildDefaultShortcuts() - Static method in class gov.nih.mipav.view.Preferences
-
Builds the default shortcut hashtable (not user modifiable).
- buildDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
setup the lightbox's control dialog.
- buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
Builds the dialog
- buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
Builds the dialog
- buildDialog(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Builds main dialog.
- buildDICOMDIRFrame() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds the image tree dialog and displays it.
- buildDICOMFrame() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds the image tree dialog and displays it.
- buildDicomSortOptions() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection.JPanelListSelection
-
Method for building DICOM tag/name sorting options.
- buildDimensionNode(ModelImage, FileWriteOptions, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF
-
Creates the dimension node for files that are not Minc2.0
- buildDimensionsPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildDimPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
- buildDisabledTextButton(String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Helper method to build a text button for the toolbar.
- buildDisplayPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the display control panel for the surface render.
- buildDisplayPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the display control panel for the surface render.
- buildDistancePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildDivisionComboBoxes() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE
-
Creates the combo-box that allows user to select the number of divisions in the image when building the histogram.
- buildDTIColorLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- buildDTILoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
- buildDTILoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- buildDTIParametersPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.VolumeTriPlanarInterfaceDTI
- buildEditDICOMFrame() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds the edit dicom tag interface.
- buildEntryPoint() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Build the entry point image scene graph structure.
- buildEntryPointBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
Build the entry point ( green sphere ) branch group image scene graph.
- buildEPIPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildEValueLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- buildEVLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- buildExtentsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
- buildFacesDescription(MetadataExtractor.Face[]) - Method in class gov.nih.mipav.model.file.MetadataExtractor.PanasonicMakernoteDescriptor
- buildFALoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- buildFiberTrackingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildField(String, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildFileField(String, String, boolean, int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildFileField(String, String, boolean, int, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildFileField(String, String, boolean, int, boolean, ActionListener) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildFileField(String, String, boolean, int, ActionListener) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildFilePanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildFilterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
- buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
- buildFilterTypeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
- BuildFirstTetrahedron(HashSet<ComputationalGeometry.MyVector3>, ComputationalGeometry.HalfEdgeData3) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.IterativeHullAlgorithm3D
- buildFitFunctPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph
-
Creates a panel to edit various fitted function features.
- buildFittingPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- buildFlythroughPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the flythru move control panel.
- buildFlythruMovePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the flythru move control panel.
- buildFlythruPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the flythru control panel.
- buildFlyThruToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the fly through toolbar.
- buildFontPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnnotation
-
builds the panel that allows customization of font style/size/color.
- BuildFromFiles(CAAMModel, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Build the model from text based file
- BuildFromFiles(CAAMModel, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Build the model from text based file and AAM configuration file
- BuildFromFiles(CAAMModel, String, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Diver method for model generation.
- BuildFromFiles(CAAMModel, Vector<String>, String, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Diver method for model generation.
- BuildFromSACF(String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq
-
Wrapper to build the sequential model from the given aam configuration files.
- BuildFromSACF(String, String, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq
-
Driver method for model generation.
- BuildFromSACF(String, Vector<String>, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq
-
Diver method for model generation.
- buildFunctionPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph
-
Creates a panel where various features of the functions can be edited, such as showing the legend, and changing function names.
- buildFuzzyCMeanPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildFuzzyPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow
-
DOCUMENT ME!
- buildGaborPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildGeneralPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the "edit image name" panel.
- buildGeneralToolBar(int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Builds the general image toolbar, with buttons for saving the image, the histogram, etc., and a slider for a 3D image.
- buildGeodesic() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the Geodesic control panel.
- buildGeodesic() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the Geodesic control panel.
- buildGrayTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildGrid(BitSet) - Method in class gov.nih.mipav.view.ViewJFrameCreatePaint
-
Builds the grid, with or without a pre-loaded BitSet (from an on-disk paintbrush)
- buildGroupElementMap(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- buildGUI() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence
-
DOCUMENT ME!
- buildGUI() - Method in class gov.nih.mipav.view.ViewDICOMDoubleListPanel
-
DOCUMENT ME!
- buildGUI() - Method in class gov.nih.mipav.view.ViewFileChooserSubsample
-
DOCUMENT ME!
- buildGUI() - Method in class gov.nih.mipav.view.ViewSelectableDoubleListPanel
-
DOCUMENT ME!
- buildGUI() - Method in class gov.nih.mipav.view.ViewSplashScreen
-
GUI initialization.
- buildHaralickPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildHardThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
-
No border
- buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds the help button.
- buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Builds the help button.
- buildHelpButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
-
Builds the help button.
- buildHelpButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Builds the help button.
- buildHelpButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Builds the help button.
- buildHelpButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
-
Builds the help button.
- buildHelpText() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Constructs the helping manual in the help panel - one of the three panels in the tabbed panel.
- buildHIFIPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildHIFITabs() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildHistogram() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
make histogram uses the class-global vars
kernelandhistogram. - buildHistoLUTPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
The histogram control panel of the lookup table.
- buildHistoLUTPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
The histogram control panel of the lookup table.
- buildHostPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the host panel by calling methods to build the server and storage panels.
- buildHTMLMenuItem(String, String, int, ActionListener, String, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder
-
DOCUMENT ME!
- buildIconButton(String, String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Helper method to build an icon button for the toolbar.
- buildIconButton(Icon, String, String, ActionListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Helper method to build a icon button.
- buildIgnoreButton() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
-
Creates a button labelled "Ignore" and connects it to the action listener event list.
- buildImage(String, String) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
Opens preview of image in frame
- buildImage(String, String) - Method in class gov.nih.mipav.view.ViewImageDirectory
-
DOCUMENT ME!
- buildImageAlignToolBar() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
- buildImageComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds a list of images.
- buildImageDependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- buildImageDestObject(ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationEM
-
Shows the 2D histogram image.
- buildImageDestObject(ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentColocalizationRegression
-
Shows the 2D histogram image.
- buildImageDestPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the destination panel which consists of the directory textline, the browse button, and a sub-panel to provide the name of the randomized image.
- buildImageEvalComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation
-
Builds a list of images.
- buildImageEvalComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation
-
Builds a list of images.
- buildImageIndependentComponents() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- buildImageList() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
- buildImageNode(ModelImage, FileWriteOptions, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF
-
Builds the image node (done for all filetypes when writing to MINC2.0 HDF5
- buildImageObject(int, int, ModelLUT, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJComponentAnimate
-
Shows the image.
- buildImageObject(int, String) - Method in class gov.nih.mipav.view.ViewJComponentAnimateClip
-
For generating the display of 1 or 2 RGB images.
- buildImageOriginPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomDir
- buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
- buildImagePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
- buildImagePanel() - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Sets up the image panel and the table that will store basic header info, and returns the panel containing these.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK
-
Builds a list of images.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
Builds a list of images.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
-
Builds a list of images.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Builds a list of images.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
Builds a list of images.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
-
Builds a list of images.
- buildImgComboBox(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
-
Builds a list of images.
- buildImportDataPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildInfoNode(ModelImage, FileFormat, FileMincHDF.HDFNode, DefaultTreeModel) - Method in class gov.nih.mipav.model.file.FileMincHDF
-
builds the Info node for files that were not originally MINC 2.0 HDF5
- buildIntegerField(String, int) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildInterface() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders
-
DOCUMENT ME!
- buildIRSPGRPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildIRSPGRPanelGEInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildIRSPGRPanelSiemensInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildItem(JMenuItem, Object) - Method in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
- BuildJacobianLayout(CeresSolver.Program, int, Vector<int[]>, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver.BlockJacobianWriter
- BuildJpegHuffmanTable(int[], int[], libxl.HuffmanTableEntry[]) - Method in class gov.nih.mipav.model.file.libxl
- buildKernelPanel(GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
Creates the panel that allow user to select the kernel size and shape of the image when building the histogram.
- buildKernelShape(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
Creates the comboBox that allows user to define the way the neighboring pixels are chosen for the histogram.
- buildKernelShapeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian
-
Creates the combo-box that allows user to select the shape of the kernel (mask).
- buildKernelShapeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode
-
Creates the combo-box that allows user to select the shape of the kernel (mask).
- buildKernelSize(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
Creates the editable text comboBox that allows user to define the number of neighboring pixels used for the histogram. the number given may only be odd, as this is the total number of pixels chosen on both sides.
- buildKernelSizeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian
-
Creates the combo-box that allows user to select the size of the kernel (mask).
- buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance
-
Creates the combo-box that allows user to select the size of the kernel (mask).
- buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMean
-
Creates the combo-box that allows user to select the size of the kernel (mask).
- buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian
-
Creates the combo-box that allows user to select the size of the kernel (mask).
- buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMode
-
Creates the combo-box that allows user to select the size of the kernel (mask).
- buildKernelSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSobel
-
Creates the combo-box that allows user to select the size of the kernel (mask).
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverter
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesPngTextFileConverterTest
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
Build the panel.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildKeyImagePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
-
Panel contains both the 3D image dir and saved 2D slices atlas dir.
- buildLabel(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a label with the proper font and font color.
- buildLabel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogServer
-
Build the label for the textField, try to standardize the label appearance in the GUI.
- buildLabel(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the label for the textField, try to standardize the label appearance in the GUI.
- buildLabelPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
The label panel of the x, y, z slider position.
- buildLabelPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
- buildLabelPanel() - Method in class gov.nih.mipav.view.ViewJFrameBase
-
The label panel of the x, y, z slider position.
- buildLabels() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Convenience method created to simplify configureFrame().
- buildLayout() - Method in class gov.nih.mipav.view.JPanelChecklist
-
DOCUMENT ME!
- buildLeftSubPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildLevelSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Builds the level slider and places it in the slider panel.
- buildLightPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the light control panel for the surface render.
- buildLightPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the light control panel for the surface render.
- buildList() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadLeica
-
DOCUMENT ME!
- buildListingPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the listing panel.
- buildListPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Build the light list panel.
- buildListPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelLights_WM
-
Build the light list panel.
- buildLoadDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
Instantiates and shows the "Load label file" dialog, which is used to load a text file containing the names of the colored labels.
- buildLoadDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- buildLoadPanel(ActionListener, JPanel, JLabel, JTextField, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
- buildLoadPanel(ActionListener, JPanel, JLabel, JTextField, String, String, JPanel) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelEPIDistortionCorrection
- buildLocationPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildLogPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates a panel for the output log.
- buildLogPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
creates a panel for the output log.
- buildLUTPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT
-
Construct the panel LUT table viewing panel.
- buildLUTs() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Convenience method created to simplify configureFrame().
- buildLUTSelectionList(ActionListener) - Static method in class gov.nih.mipav.view.JPanelHistogram
-
Build the center part of the LUT toolbar.
- buildLUTSelectionList(ActionListener) - Static method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.
- buildLUTThresholdToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Creates the LUT thresholding toolbar.
- buildLUTToolBarBottom() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Builds the LUT toolbar, with buttons for quick-changing the LUT of the image.
- buildLUTToolBarTop() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Build the top part of the LUT toolbar.
- buildMagSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
builds the image magnification slider.
- buildMagSliderLabels(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
builds labels used by the magnification slider.
- buildMagToolBar(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds the image toolbar for zooming
- buildMainPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders
-
DOCUMENT ME!
- buildMainPanel(float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
- buildMaskLoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
- buildMatrixPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the panel usd in the tabbed pane "transform" as appropriate for the number of dimensions of the image.
- buildMatrixPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
Builds the matrixPanel.
- buildMaximumSizeComboBox(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMedian
-
Creates the combo-box that allows user to select the maximum size of the kernel (mask) when adaptive median filtering is selected.
- buildMaxSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
- buildMenu() - Method in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
-
Builds the File menu for the HyperGraph interface.
- buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter
-
Builds menu with load, save, and exit options.
- buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter
-
Builds menus for the frame.
- buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Builds menu.
- buildMenu() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Builds menus for the tri-planar view.
- buildMenu() - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
- buildMenu() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Builds menus for the tri-planar view.
- buildMenu() - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Builds a small menu with "New directory", "Refresh directory", "Reset file filter", and "Open image" options.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
This method builds a menu which contains the options Save image as and Close Animate.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
This method builds a menu which contains the options Save image as and Close Animate.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM
-
This method builds a menu which contains the option Close Colocalization.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
This method builds a menu which contains the option Close ColocalizationRegression.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
Builds the jmenubar and adds two options.. disregard series #s and exit/close
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameGraph
-
Function that builds the menu of various tools to be used in conjunction with the graph. ie: opening / saving files, changing gridlines, title / axis labels, etc.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameHistoLUT
-
Deprecated.This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameMessage
-
Creates the needed menus.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph
-
Creates the needed menus.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
this method builds a menu which contains the options Save image as and Close Registration.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
this method builds a menu which contains the options Save image as and Close Registration.
- buildMenu() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds menus for the tri-planar view.
- buildMenu() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds menus for the User Interface.
- buildMenu(String, int, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder
-
Static method for building a JMenu.
- buildMenu(JFrame) - Method in class gov.nih.mipav.view.JFrameHistogram
-
This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.
- buildMenuBar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Builds a simple menubar for this frame (ViewJFrameLightBox).
- buildMenuBar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Builds a simple menubar for this frame (ViewJFrameLightBox).
- buildMenuEntries() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
Creates the menu bar for the dialog.
- buildMenuEntries() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Builds a small menu with "Clear log" and "Overwrite" options.
- buildMenuItem(CustomUIBuilder.UIParams, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder
-
Build a menu item using a pre-made UIParams
- buildMenuItem(CustomUIBuilder.UIParams, ActionListener, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder
-
Creates a Menu Item using pre-packaged UIParams
- buildMenuItem(String, String, int, ActionListener, String, boolean) - Static method in class gov.nih.mipav.view.ViewMenuBuilder
-
DOCUMENT ME!
- buildMenuItem(String, String, int, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder
-
DOCUMENT ME!
- buildMesh() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- buildMessageFrame() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds the message frame where user/program data can be displayed.
- buildMessagePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Construct the Query retrieval message panel.
- buildMinimumTickSpacing() - Method in class gov.nih.mipav.view.ViewJSlider
-
Sets values for minimum allowable tick spacing depending on size of GUI.
- buildMinMaxImageStack(double[][], double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTrilateralFilter
- buildMinMaxPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
- buildMinSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Builds the min slider and places it in the slider panel.
- buildModeComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildModel(Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB
-
Build the model with the given model image and VOIs vector along
- buildModel(Vector<ModelImage>, String, String) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB
-
Build the AAM model from the given image and VOIs vector
- BuildModel(CAAMModel, Vector<ModelImage>) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Build the model from prostate images and VOIs
- BuildModel(CAAMModel, Vector<ModelImage>, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Build the model in supervised way, with given prostate images and VOIs.
- buildModifyGraphPanel() - Method in class gov.nih.mipav.view.ViewJFrameGraph
-
Creats a panel where various featuers of the graph can be edited, such as visbility of gridlines and minor tick marks, number of gridlines, background color, range, and labels for the title, x and y axiis.
- buildMouseControlPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera
-
Creates the mouse control panels.
- buildMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Build the mouse recorder panel.
- buildMousePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the mouse control panel for the raycast render.
- buildMousePanel(double) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Builds the mouse panel.
- buildMoviePanel() - Method in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
Build the mouse recorder button panel.
- buildName(String) - Method in class gov.nih.mipav.view.ViewVOIVector
-
Builds a new voi name by incrementing the given name.
- buildNamedTextButton(String, String, String, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Helper method to build a text button for the toolbar.
- buildNameSuggestionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates a name-suggestion panel.
- buildNavigationModePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Builds the navigation mode control panel.
- buildNewSourceTree(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
Creates a new directory tree starting with
directoryas the root. - buildNoThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
- buildNotResampleButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample
-
Builds the Cancel button.
- buildOARButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
- buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
creates the planel which contains the OKAY and Cancel buttons. sets their sizes, colours and listeners.
- buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogEditor
-
creates a JPanel to hold the Okay and Cancel buttons. in a FlowLayout; presets all the listeners to the buttons, the fonts and text colour.
- buildOkayCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
creates the planel which contains the OKAY and Cancel buttons. sets their sizes, colours and listeners.
- buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
-
Uses the super method to create a standard OK Button, but then resets the button text to read "Save" leaving the action command string as normal: "OK".
- buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Builds the OK button.
- buildOKButton() - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
-
Builds the OK button.
- buildOKButton(String, ActionListener) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds the OK button.
- buildOKCancelButtons() - Method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds button panel consisting of OK, Cancel and Help buttons.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
Creates the panel which consists of the OKAY button and the Cancel button.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMDeleteTagEditor
-
builds the panel which allows user to accept or decline using this algorithm.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMNewTagEditor
-
builds the panel which allows user to accept or decline using this algorithm.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMTagEditor
-
builds the panel which allows user to accept or decline using this algorithm.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogSelectDICOMColumnHeaders
-
DOCUMENT ME!
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
creates the panel which consists of the OKAY button and the Cancel button.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
creates the panel which consists of the OKAY button and the Cancel button.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
creates the panel which consists of the OKAY button and the Cancel button.
- buildOKCancelPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Builds panel for opacity control change on the triplanar X, Y, Z.
- buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the volume opacity control panel for the surface render.
- buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Builds panel for opacity control change on the triplanar X, Y, Z.
- buildOpacityPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the volume opacity control panel for the surface render.
- buildOptionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the random-button panel,which are two radio-buttons determining the naming actions for the output directories.
- buildOptionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
Builds the OptionPanel.
- buildOptionsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
part of the algorithm rests on finding the original image minus an estimation of the local mean.
- buildOrientPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the "orientation edit" panel.
- buildOutputPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
- buildOverlayStrings(FileInfoBase, String, String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
-
Builds the overlay Strings from the tag's value.
- buildPadButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample
-
Builds the Pad button for padding the blank images.
- buildPage() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Builds the panels for a page and adds them to the page.
- buildPage() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Builds the panels for a page and adds them to the page.
- buildPaintToolBar(int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds the paint toolbar
- buildPaintToolBar(int, int) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Builds the paint toolbar, with buttons for widths of paint brushes, color chooser, etc.
- buildPanel() - Method in class gov.nih.mipav.view.JPanelHistogram
-
Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay
-
builds each quadrant panel that has 4 buttons.
- buildPanel(int, String, int, Color) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelClip_WM
-
Build x slider control panel.
- buildPanelA() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Method that displays the histogram and controls to manipulate the opacity.
- buildPanelA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build the arbitrary clipping slider control panel.
- buildPanelA() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Method that displays the histogram and controls to manipulate the opacity.
- buildPanelA() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelA(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelA(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelA(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelA(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelB() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Method that displays the histogram and controls to manipulate the opacity.
- buildPanelB() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Method that displays the histogram and controls to manipulate the opacity.
- buildPanelB() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelB(ModelImage, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelB(ModelImage, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelB(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelB(ModelImage, ModelLUT, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelGM_A() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Method that displays the histogram and controls to manipulate the opacity.
- buildPanelGM_A() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Method that displays the histogram and controls to manipulate the opacity.
- buildPanelGM_A() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelGM_B() - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Method that displays the histogram and controls to manipulate the opacity.
- buildPanelGM_B() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Method that displays the histogram and controls to manipulate the opacity.
- buildPanelGM_B() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Method that displays the histogram and LUT and other controls to manipulate the LUT.
- buildPanelS() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build static clipping slider control panel.
- buildPanelSInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build static inverse clipping slider control panel.
- buildPanelX() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build x slider control panel.
- buildPanelXInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build x negative clipping slider control panel.
- buildPanelY() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build the y clipping slider control panel.
- buildPanelYInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build the y negative clipping slider control panel.
- buildPanelZ() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build the z clipping slider control panel.
- buildPanelZInv() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelClip
-
Build the z negative clipping slider control panel.
- buildParameterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion
-
DOCUMENT ME!
- buildParameterPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion
-
DOCUMENT ME!
- buildParSliceMap() - Method in class gov.nih.mipav.model.file.FilePARREC
- buildParSliceMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- buildParVolMap() - Method in class gov.nih.mipav.model.file.FilePARREC
- buildParVolMap() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- buildPasswordField() - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Helper method to create a password field with the proper font and font color.
- buildPasswordField(String, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildPlugInsMenu(ActionListener) - Method in class gov.nih.mipav.view.ViewUserInterface
-
Called by either userInterface (this) or by another actionlistener (ViewJFrameImage) to build the plugins menu bar.
- buildPluginsTree() - Method in class gov.nih.mipav.view.dialogs.JDialogUninstallPlugin
-
Starts process to build exact copy of installed plugin structure as tree nodes.
- buildPreprocessingPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildPresetPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JFrameSurfaceMaterialProperties
-
Builds the preset panel to display the preset images and buttons.
- buildPresetPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JFrameSurfaceMaterialProperties_WM
-
Builds the preset panel to display the preset images and buttons.
- buildPressedButtonBorder() - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a new border of the type used when a toggle button is depressed.
- buildProbeModelPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the tab which allows the user to change the currently used probe model.
- buildProbePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the adding surface control panel for the surface render.
- buildProbePlacementPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the tab with controls / info used in probe placement before a burn.
- buildProbes(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
Build the three types of probe.
- buildProbeSlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Setup the probe moving control panel that include x, y, z moving sliders.
- buildProgressBar(String, String, int, int) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Constructs progress bar.
- buildProgressBar(String, String, int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Constructs progress bar.
- buildPtInfoPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Constructs the patient information input panel.
- BuildPyr(ModelSimpleImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS
-
Builds an image pyramid (if its not cached beforehand).
- buildQueryPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the DICOM Query panel, one of the three tabbed Panels in the DICOMQuery GUI.
- buildQuickList() - Method in class gov.nih.mipav.view.ViewMenuBuilder
-
Builds the quicklist for the first time.
- buildRadioButton(String, boolean) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildRadioButton(String, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Constructs the radio button for fast input of study date range.
- buildRadioButton(String, boolean, ButtonGroup) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a new radio button component.
- buildRadioButtonMenuItem(String, String, boolean) - Method in class gov.nih.mipav.view.ViewMenuBuilder
- buildRadioButtonMenuItem(String, String, boolean, ButtonGroup) - Method in class gov.nih.mipav.view.ViewMenuBuilder
- buildRAM() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
- buildRandButtonPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the random-button panel,which are two radio-buttons determining the naming actions for the output directories.
- buildRandSelectionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
puts together the panel of recursive box and directory-randomization level radio button.
- buildRawBuffer(DICOM_Comms) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Fills the compData buffer from the vrBuffer.incomming buffers.
- buildRayCastCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the camera control panel for the raycast render.
- buildRayCastOptions() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the view control panel for the raycast render.
- buildRayCastToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the raycast toolbar.
- buildRegistrationToolBar(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
builds the first registration toolbar.
- buildRegistrationToolBar(ActionListener, boolean) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
builds the first registration toolbar.
- buildRenderModePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Builds the render mode control panel.
- buildResampleButton() - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample
-
Builds the OK button.
- buildResamplePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
Builds the resample panel.
- buildResampleStatusPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
- buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCT
-
Builds the Edit button.
- buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT
-
Builds the Edit button.
- buildResetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Builds the reset button.
- buildResetButton() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera
-
Build the reset button.
- buildResetDefaultsButton() - Method in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
-
Builds the reset to defaults button.
- BuildResidualLayout(CeresSolver.Program, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver
- buildResolutionPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the panels which is edited in the tabbed pane "resolutions".
- buildRGBToolBar() - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Creates the RGB histogram toolbar.
- buildRGBToolBar(ActionListener) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Method to build the toolbar for the RGB frame.
- buildRowColPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
sets up the row and column panel.
- buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
- buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buildSavedFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
- buildSaveDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
Instantiates and shows the "Save label file" dialog, which is used to save a text file containing the names of the colored labels.
- buildSaveDialog() - Method in class gov.nih.mipav.view.dialogs.JDialogTalairachTransform
- buildSaveGradBvalPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- buildScaleMax(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
define the possibilities of where the scale max comes from.
- buildScriptToolBar(boolean) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Builds the script toolbar, for quickly recording and playing back scripts.
- buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
Make a scroll frame and puts an image component into it.
- buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
Make a scroll frame and puts an image component into it.
- buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM
-
Make a scroll frame and puts an image component into it.
- buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
Make a scroll frame and puts an image component into it.
- buildScrollPane() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
Make a scroll frame and puts an image component into it.
- buildScrollPane(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogThree
- buildScrollPane(JComponent) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Create a new scroll pane, containing a component.
- buildScrollPane(JComponent, int, int) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Create a new scroll pane, containing a component.
- buildScrollPanes() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
Make a scroll frame and puts an image component into it.
- buildScrollTextArea(Color) - Static method in class gov.nih.mipav.view.components.WidgetFactory
- buildSculpt() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the Sculpturing control panel.
- buildSculpt() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the Sculpturing control panel.
- buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the visual display in which to list all selected directories in the directory tree.
- buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection
-
creates the visual display in which to list all selected directories in the directory tree.
- buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
creates the visual display in which to list all selected directories in the directory tree.
- buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
creates the visual display in which to list all selected directories in the directory tree.
- buildSelectedListing() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
creates the visual display in which to list all selected directories in the directory tree.
- buildSelectOptionsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
- buildSendPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the host panel by calling methods to build the server and storage panels.
- buildSeqGroupElementMap(Hashtable<FileDicomKey, FileDicomTag>) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- buildSequenceInfoPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- buildSequencesPanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildServerPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the panel that contains the server table and four buttons.
- buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCT
-
Builds the set button.
- buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTHistoLUT
-
Builds the set button.
- buildSetButton() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Builds the set button.
- buildSetButton(GuiBuilder, String) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
- buildSettingsPanel(float, float) - Method in class gov.nih.mipav.view.dialogs.JDialogZoom
- buildShearWarpCameraPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the camera control panel for the shearwarp render.
- buildShearWarpOptions() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the view control panel for the shearwarp render.
- buildShearWarpToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the shearwarp toolbar.
- buildShininessPanel() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Build the shinness control panel.
- buildShortcutTable() - Static method in class gov.nih.mipav.view.Preferences
-
Builds a hashtable of actioncommands (keys) with associated keystrokes from the Preferences file.
- buildSimplePanel() - Method in class gov.nih.mipav.view.JPanelHistogram
- buildSimpleToolBar() - Method in class gov.nih.mipav.view.ViewControlsImage
-
Creates the main toolbar without any of the pre-made additional bars (no VOI etc) for use with addCustomToolBar() to add custom-built bars to the main bar
- buildSimpleToolBar(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram
- buildSlicePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the slices control panel for the surface render.
- buildSlicePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the slices control panel for the surface render.
- buildSlicePickPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Build the slice pickable panel
- buildSlider(String, int, String) - Method in class gov.nih.mipav.view.dialogs.GuiBuilder
- buildSlider(JPanel) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
- buildSliderLabels(int) - Method in class gov.nih.mipav.view.ViewJSlider
-
Builds the slider labels for the slider.
- buildSmartThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
- buildSourceListingPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection
-
Creates the panel holding the directory tree.
- buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
Creates the panel holding the directory tree.
- buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
Creates the panel holding the directory tree.
- buildSourceListingPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Creates the panel holding the directory tree.
- buildSourcePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection
-
Creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildSourcePanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildSourcePanel(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the source panel which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildSourceTreeListing(boolean) - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Creates the tree that holds the image files and returns the panel containing the tree.
- buildSourceTreeListing(String) - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
Creates the panel holding the directory tree.
- buildSPGRPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildSPGRPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildSpyr(Vector<double[][]>, Vector<int[]>, Vector<int[]>, Vector<double[][]>, double[][], int, String, int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
- buildSpyrLevs(Vector<double[][]>, Vector<int[]>, double[][], int, double[][], double[][], int) - Method in class gov.nih.mipav.model.algorithms.PyramidToolbox
- buildSquarePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogMagnificationControls
- buildStartButton() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelCamera
-
Builds the cancel button.
- buildStartLocationsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the panels which is edited in the tabbed pane "Dataset Origin".
- buildStaticPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPaintGrow
-
DOCUMENT ME!
- buildStatusPanel() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
Panel that builds the status display panel.
- buildStopButton() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
Builds the Stop button.
- buildStoragePanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Builds the panel that contains the storage table and four buttons.
- buildSubsamplePanel() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildSurfaceBoxPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Build the options panel.
- buildSurfacePanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the adding surface control panel for the surface render.
- buildSurfacePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Build the adding surface control panel for the surface render.
- buildSurfaceTexturePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
Builds the Surface texture panel.
- buildSurfaceViewToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
The the top one volume view toolbar.
- buildSurRenderToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the surface render toolbar.
- buildSVMoptionsPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- buildT2LoadPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIVisualization
- buildTabbedPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
- buildTable() - Method in class gov.nih.mipav.view.dialogs.JDialogOverlay.JDialogChooseOverlay
-
Build the table to be used in the dialog (dicom or image attributes).
- buildTableModel() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
- buildTablePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- buildTableScrollPane() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
A helper method to build a
JScrollPaneout oftagsTable - buildTagInfoPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- buildTagSelectorPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- buildTagsModel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
A helper method to build a
ViewTableModeland fill in DICOM tag info - buildTagsTable() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
A helper method to build a
JTableout of aViewTableModel - buildTagsTableListSelector() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
A helper method to build the
tagsTablelist selection method - buildTalairachPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
Builds the Talairach Transform scrollpane with all talairach related data.
- buildTargetListPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the target surface (tumor) control panel.
- buildTargetPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
- buildTDistLUT(int, double, ModelImage) - Static method in class gov.nih.mipav.model.structures.ModelLUT
-
Build LUT consisting of a student t-distribution at the specified level os significance for the given degrees of freedom.
- buildTemplateList() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
- buildTensorEstPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
- buildTensorPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildText(int, String, Vector3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Attach some 3D text to a BranchGroup or TransformGroup.
- buildTextArea(String, boolean) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a new text area.
- buildTextButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Helper method to build a text button for the toolbar.
- buildTextButton(String, String, String, ActionListener) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Helper method to build a text button.
- buildTextField(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Helper method to create a text field with the proper font and font color.
- buildTextPanel() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Constructs the panel that contains the query result table.
- BuildTextureVectors() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Samples all shapes in the training set and build the corresponding texture vectores.
- BuildTextureVectorsFromImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Transform image to texture vector
- buildThreshold(JPanel, GridBagConstraints, GridBagLayout) - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
Creates the txt-box that allows user to insert the bottom-end pixels to skip.
- buildThresholdPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreMethod
- buildThresholdPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB
-
Builds each threshold panel (red, green, and blue).
- buildThresholdPanel(int) - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
Builds each threshold panel (red, green, and blue).
- buildTImageSliderLabels(int, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds the slider labels for the time slider.
- buildTimeSlider() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices
-
Builds the time (4D) slider.
- buildTimeSlider() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSlices_WM
-
Builds the time (4D) slider.
- buildTinvTable() - Static method in class gov.nih.mipav.model.algorithms.StatisticsTable
-
Builds the t-statistic table, first numerical row is list of significant values, subsequent rows are the t-statistic values for incremental degrees of freedom.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.MipavUtil
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
- buildTitledBorder(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Constructs the titled border for the panel.
- buildTitledBorder(String, Color) - Static method in class gov.nih.mipav.view.dialogs.JDialogBase
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildTitledBorder(String, Border) - Method in class gov.nih.mipav.view.renderer.JDialogVolViewResample
-
Builds a titled border with the given title, an etched border, and the proper font and color.
- buildToggleButton(CustomUIBuilder.UIParams, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Create a new toolbar togglable button.
- buildToggleButton(String, int, String, String, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Create a new toolbar togglable button.
- buildToggleButton(String, String, String) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Create a new toolbar togglable button.
- buildToggleButton(String, String, String, String, ButtonGroup, JToolBar) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Helper method to build a toggle button for the toolbar.
- buildToggleButton(String, String, String, String, ButtonGroup, JToolBar, boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Helper method to build a toggle button for the toolbar.
- buildToggleButton(String, String, String, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Create a new toolbar togglable button.
- buildToolbar() - Method in class gov.nih.mipav.view.dialogs.JDialogRecordLUT
-
Build the toolbar, for now, only one save button.
- buildToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Builds a simple toolbar for this frame (ViewJFrameLightBox).
- buildToolbar() - Method in class gov.nih.mipav.view.ViewImageDirectory
-
Builds a toolbar with the same functionality as the menu.
- buildToolbar() - Method in class gov.nih.mipav.view.ViewJFrameDICOMParser
-
Builds a toolbar with the same functionality as the menu.
- buildToolbar() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Builds a simple toolbar for this frame (ViewJFrameLightBox).
- buildToolbar(boolean, JToolBar, ButtonGroup, JToggleButton, boolean) - Method in class gov.nih.mipav.view.ViewControlsImage
-
DOCUMENT ME!
- buildToolbar(boolean, JToolBar, ButtonGroup, JToggleButton, boolean, boolean) - Method in class gov.nih.mipav.view.ViewControlsImage
-
Builds the toolbars.
- buildToolBar() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Build the toolbar control.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse
-
Builds the toolbar for the mouse recorder.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Build the toolbar.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter
-
Builds the toolbar for the mouse recorder.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter
-
Builds the toolbar for the volume render frame.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Builds the toolbar for the volume render frame.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the probe toolbar control.
- buildToolBar() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
Build the toolbar.
- buildToolBar() - Method in class gov.nih.mipav.view.ViewJFrameMessage
-
Builds the toolbar.
- buildToolBar() - Method in class gov.nih.mipav.view.ViewJFrameMessageGraph
-
Builds the needed toolbar.
- buildToolBar(ModelImage) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Builds the toolbars.
- buildToolBar2(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
builds the second registration toolbar.
- buildToolBar2(ActionListener) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
builds the second registration toolbar.
- buildToolbarBorder() - Static method in class gov.nih.mipav.view.components.WidgetFactory
-
Builds a new border of the type used by toolbars.
- buildToolbarMenu(boolean) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
- buildToolBarPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
A helper method to build the toolbar with various buttons to help in the editing of DICOM tags
- buildToolbars() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Builds the toolbars for the tri-planar view.
- buildToolbars() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds the toolbars for the tri-planar view.
- buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
- buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
- buildTrainFilePanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
- buildTrainGroupPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- buildTransformStatusPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
- buildTransformTypePanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildTreatmentPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
- buildTreeDialog() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Builds the image tree dialog and displays it.
- buildTreT1HIFISpecificsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildTreT1HIFISpecificsPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildTreT1LongPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildTreT1LongPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildTreT1SpecificsPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildTreT1SpecificsPanelInner() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- buildTriImage(ModelImage, ModelLUT, ModelRGB, ModelImage, ModelLUT, ModelRGB, int) - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
This method creates an image from the two ModelImage objects and ModelLUT objects passed as parameters.
- buildTSlider() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
builds the time (4th dimension) slider.
- buildTSliderLabels(int, int) - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
builds labels used by the time slider.
- buildUndoTableModel(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
- buildUnsharpPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
part of the algorithm rests on finding the original image minus an estimation of the local mean.
- buildUserInterface() - Method in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- buildVasculatureBG() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
Build the vasculature ( blue sphere ) branch group image scene graph.
- buildViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
Build the view control panel.
- buildViewPanel() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Build the view control panel for the surface render.
- buildViewToolbar() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
The the top one volume view toolbar.
- buildViewToolbar() - Method in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarInterface
-
The the top one volume view toolbar.
- buildVisuzalizationPanel() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- buildVOIContourPane() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
DOCUMENT ME!
- buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildVOIPanel(VOIVector) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
creates the source panel for the VOI tab which consists of the directory line, the browse button, and a check box approving the anonymize in sub-directories.
- buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
-
DOCUMENT ME!
- buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
-
DOCUMENT ME!
- buildVOITree() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
DOCUMENT ME!
- buildVolumePositionPanel() - Method in class gov.nih.mipav.view.ViewJFrameTriImage
-
Builds the volume position panel, which is the panel that sits in the plug-in area of the 2x2 tri-planar layout.
- buildVolumeTriPlanarVOIToolBar(int, int, boolean, boolean, ButtonGroup) - Method in class gov.nih.mipav.view.ViewToolBarBuilder
-
Builds the VOI toolbar, with buttons for creating various types of VOIs (elliptical, square, etc.), and for cut and paste operations.
- BuildWarpTable() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
-
Cache method, that caches triangle info.
- buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
- buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
- buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildWaveletNameComboBox() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
- buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
- buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
- buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildWaveletOrderComboBox(String) - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
- buildWaveletPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
- buildWindowLevelPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Builds the slider Panel.
- buildWindowSlider(JPanel, GridBagConstraints) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Builds the window slider and places it in the slider panel.
- buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares
-
Builds 4x4 transformation matrix from R and T where T=p2-R*p1.
- buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation
-
Builds 4x4 transformation matrix from R and T where T=p2-R*p1.
- buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
Builds 4x4 transformation matrix from R and T T=p2-R*p1.
- buildXfrm(double[], double[], Matrix) - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
Builds 4x4 transformation matrix from R and T T=p2-R*p1.
- buildXLATdestPanel() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
creates the destination panel which consists of the directory textline, the browse button for the translation key file.
- bundle - Variable in class gov.nih.mipav.model.structures.GenericPolygonClipper.edge_node
- BUNDLE_HEAD - Enum constant in enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
- bundle_state() - Constructor for enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
- BUNDLE_TAIL - Enum constant in enum gov.nih.mipav.model.structures.GenericPolygonClipper.bundle_state
- BundledPlugInInfo - Interface in gov.nih.mipav.plugins
-
This interface binds a PlugIn to a PlugInBundle.
- BUNIT - Variable in class gov.nih.mipav.model.file.FileInfoFits
- bup(double, double, double, double, int, double) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- BurnAttributes - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
Class that holds the information about each surface; the BranchGroup which holds the surface subtree, the name of the surface in the dialog, the color of the surface, the shininess of the surface, the level of detail (for clod meshes), the number of triangles (changes with level of detail), the polygon mode (fill, line, or point), and a flag indicating if this is a clod mesh.
- BurnAttributes(BranchGroup, String, Color4f, float, float, Point3f, float) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
Constructs new attributes structure to hold information needed for displaying each burn.
- BurnAttributes(BranchGroup, String, Color4f, float, float, Point3f, float, Point3f, boolean, boolean, boolean, BitSet, Point3f, Vector3f, Transform3D) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
Constructs new attributes structure to hold information needed for displaying each surface.
- burnBackFaceCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
burning point back face culling check box.
- burnBase - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Burn base reference.
- BurnBase - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
Title: BurnBase
- BurnBase(SurfaceRender, JPanelProbe) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase
-
Constructor.
- BurnBaseView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
The default probe burning type view.
- BurnBaseView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Constructor.
- BurnBaseView.Edge - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
A representation of an edge for the vertex-edge-triangle table.
- BurnBaseView.UnorderedSetInt - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
DOCUMENT ME!
- burnBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
burn subtree, holds all the Shape3D objects that make up the surface.
- burnBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.Probe
-
The root branch group of the probe burning geometry shape.
- burnClipCB - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
burning point clipping check box.
- burnColor - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Burning point surface color.
- BurnCoolTipView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
The default probe burning type view.
- BurnCoolTipView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnCoolTipView
-
Constructor.
- BurnHeatView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
The default probe burning type view.
- BurnHeatView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnHeatView
-
Constructor.
- burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase
-
Current burning point index.
- burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Current burning point index.
- burnIndex - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Current burning point index being hightlighted.
- burningBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Burning point branch group array, used to switch between different buring point.
- burningPtTransVector - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Burning point coordinate vector in world coordinate system.
- burningTime - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
burning time.
- burnList - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Burn list that hold the burning point names.
- burnMask - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
BitSet burning sphere or ellposoid mask.
- burnPoint - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
Burn center coordinate.
- BurnRegularView - Class in gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview
-
The default probe burning type view.
- BurnRegularView(SurfaceRender, JPanelProbe, BranchGroup) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnRegularView
-
Constructor.
- burnRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase
-
The root branch group of the burning point.
- burnRootParentBG - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
The root branch group the default burning point.
- burns - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.TreatmentInformation
-
List of burn attributes.
- burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase
-
Burning type flag, default to the default burning point type.
- burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Burning type.
- burnType - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute
-
Burning type, default, regular, heat, etc.
- BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
DOCUMENT ME!
- BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
DOCUMENT ME!
- BUTTERWORTH - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
- BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
DOCUMENT ME!
- BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
DOCUMENT ME!
- BUTTERWORTH - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
DOCUMENT ME!
- butterworthFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- butterworthOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter
-
DOCUMENT ME!
- button - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelClip.OkColorListener
-
Button reference.
- button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.OkColorListener
-
DOCUMENT ME!
- button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.OkColorListener
-
DOCUMENT ME!
- button - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.OkColorListener
-
DOCUMENT ME!
- button - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.OkColorListener
-
DOCUMENT ME!
- button - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.OkColorListener
-
DOCUMENT ME!
- button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.OkColorListener
-
Color Button
- button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelAnnotationAnimation.OkColorListener
-
Color Button
- button - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM.OkColorListener
-
Color Button
- button - Variable in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface.OkColorListener
-
Color Button
- button - Variable in class gov.nih.mipav.view.ViewMenuBuilder.MenuDragOp.MenuMouse
- button_change_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- button_change_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- button_clear_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- button_clear_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- button_load_clicked() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- button_load_clicked() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- button_run_clicked(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- button_run_clicked(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- button_save_clicked(String) - Method in class gov.nih.mipav.model.algorithms.LIBSVM.svm_toy_frame
- button_save_clicked(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_toy
- BUTTON0 - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
- BUTTON1 - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
- buttonArray - Variable in class gov.nih.mipav.view.dialogs.JDialogOverlay
-
DOCUMENT ME!
- buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
DOCUMENT ME!
- buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- buttonArray - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- buttonAxial - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Choose button for each VOI and ply file.
- buttonCoronal - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Choose button for each VOI and ply file.
- buttonCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Choose button for each VOI and ply file.
- buttonDilate - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonEnergyInput - Variable in class gov.nih.mipav.view.dialogs.JDialogWatershed
-
DOCUMENT ME!
- buttonErode - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonExportToMask - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonExportToVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonFile - Variable in class gov.nih.mipav.view.dialogs.JDialogQuantify
- buttonFillBackground - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonFillBackgrounds - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonfine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- buttonGrid - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint
-
Array of toggle buttons used to create the grid
- buttonGroup - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
- buttonGroup - Variable in class gov.nih.mipav.view.ViewMenuBuilder
- buttonGrowRegion - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
- buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
- buttonImage - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- buttonImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- buttonImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- buttonImageFATCED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- buttonImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- buttonImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- buttonImageGRECED - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- buttonImageTarget - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- buttonImportFromMask - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonImportFromVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonInputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
- buttonInputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
- buttonKeyImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
- buttonMatchFile - Variable in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- buttonModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
- buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
- buttonModelFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
- buttonMpFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
- buttonnormal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- buttonOutputFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
- buttonOutputFile - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
- buttonOutputFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnnotation
-
Panel to contain the okay/cancel/help buttons.
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDataProvenance
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogDicomDir
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Button panel to hold the OK button, Cancel button, and Help button.
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogSurfaceReconstruction
-
Button panel to hold the OK button, Cancel button, and Help button.
- buttonPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogText
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAction
-
Panel to contain the okay/cancel/help buttons.
- buttonPanel - Variable in class gov.nih.mipav.view.graphVisualization.JDialogAddNode
-
Panel to contain the okay/cancel/help buttons.
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera
-
Button panel.
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox
-
DOCUMENT ME!
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast
-
Button Panel.
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp
-
Button Panel.
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogRenameDirs
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Button panel to hold the OK button, Cancel button, and Help button.
- buttonPanel - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogSurfaceReconstructionTBI
-
Button panel to hold the OK button, Cancel button, and Help button.
- buttonPly - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Choose button for each VOI and ply file.
- buttonPly - Variable in class gov.nih.mipav.view.renderer.WildMagic.TBI.JDialogConvertVOITBI
-
Choose button for each VOI and ply file.
- buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
- buttonPointsFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
- buttonPress - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseBehavior
-
DOCUMENT ME!
- buttonRevert - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonRmObject - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonRmObjects - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonSagittal - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveMergedVOIs
-
Choose button for each VOI and ply file.
- buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
- buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
- buttonSavedFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
- buttonSaveImage - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
- buttonShortkeys - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
DOCUMENT ME!
- buttonShortkeys - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- buttonsIdx - Static variable in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
- buttonSize - Variable in class gov.nih.mipav.view.ViewJFrameCreatePaint
-
Make sure the button size is always this dimension
- buttonSVMModel - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
- buttonTextArrayList - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
this is the array list of texts for the mask number buttons.
- buttonTimesFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
- buttonTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
- buttonTissueFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
- buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
- buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
- buttonTrainFileName - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
- buttonVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
- buttonVOIFile - Variable in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
- buttonVOIFile2 - Variable in class gov.nih.mipav.view.dialogs.JDialogSM2
- buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
DOCUMENT ME!
- buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
DOCUMENT ME!
- buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
DOCUMENT ME!
- buttonWeightInput - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
DOCUMENT ME!
- buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
DOCUMENT ME!
- buttonWeightRef - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
DOCUMENT ME!
- bVal - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- bvalGradAppButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
-
DOCUMENT ME!
- bvalGradFileLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIImportData
-
DOCUMENT ME!
- bValue - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- bValueArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
- bValueIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
- bValuePos - Variable in class gov.nih.mipav.model.file.FilePARREC
-
bFactorIndex
- bvalues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIPipeline
- bValues - Variable in class gov.nih.mipav.model.file.DTIParameters
- bValues - Variable in class gov.nih.mipav.model.file.FileBRUKER
- bValues - Variable in class gov.nih.mipav.model.file.FileImageXML
- bValues - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIGradTableCorrectionAfterTrans
- bValuesArrayList - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTICreateListFile
-
this is an array of b-values that for each volume
- BValuesPerDirection - Variable in class gov.nih.mipav.model.file.FileInfoBRUKER
- bValueTextField - Variable in class gov.nih.mipav.view.dialogs.JDialogDTIEstimateTensor
-
textfields *
- bw - Variable in class gov.nih.mipav.model.file.FileXML
-
Buffered writer for writing to XML file
- bW - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- bwAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
- bwImageGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- bwlabel4(int[][]) - Method in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
- bwSegmentedImage - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- bwSegmentedImage - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- bx - Variable in class gov.nih.mipav.model.structures.Voro
- bx - Variable in class gov.nih.mipav.model.structures.Voro.container_base
-
The maximum x coordinate of the container.
- bx - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
The maximum x coordinate of the container.
- bx - Variable in class gov.nih.mipav.model.structures.Voro.unitcell
-
The x coordinate of the first vector defining the periodic domain.
- bx - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The x coordinate of the first vector defining the periodic domain.
- bx - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- bxsq - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_poly_radius_poly
-
A constant set to boxx*boxx+boxy*boxy+boxz*boxz, which is frequently used in the computation.
- bxsq - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_periodic_radius_mono
-
A constant set to boxx*boxx+boxy*boxy+boxz*boxz, which is frequently used in the computation.
- bxsq - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_poly_radius_poly
-
A constant set to boxx*boxx+boxy*boxy+boxz*boxz, which is frequently used in the computation.
- bxsq - Variable in class gov.nih.mipav.model.structures.Voro.voro_compute_container_radius_mono
-
A constant set to boxx*boxx+boxy*boxy+boxz*boxz, which is frequently used in the computation.
- bxy - Variable in class gov.nih.mipav.model.structures.Voro.unitcell
-
The x coordinate of the second vector defining the periodic domain.
- bxy - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The x coordinate of the second vector defining the periodic domain.
- bxz - Variable in class gov.nih.mipav.model.structures.Voro.unitcell
-
The x coordinate of the third vector defining the periodic domain.
- bxz - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The x coordinate of the third vector defining the periodic domain.
- by - Variable in class gov.nih.mipav.model.structures.Voro
- by - Variable in class gov.nih.mipav.model.structures.Voro.container_base
-
The maximum y coordinate of the container.
- by - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
The maximum y coordinate of the container.
- by - Variable in class gov.nih.mipav.model.structures.Voro.unitcell
-
The y coordinate of the second vector defining the periodic domain.
- by - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The y coordinate of the second vector defining the periodic domain.
- by - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- by2Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
DOCUMENT ME!
- by4Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
DOCUMENT ME!
- by8Button - Variable in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
DOCUMENT ME!
- byArea - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize.perShapeCost
- byContour - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
-
A radio button to select calculation by VOI contour.
- byContour - Variable in class gov.nih.mipav.view.JPanelStatisticsList
-
true if by contour or by slice and contour and show Totals is not selected
- byContourSlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
-
A radio button to select calculation by VOI contour.
- bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogLocalVariance
-
DOCUMENT ME!
- bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMean
-
DOCUMENT ME!
- bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMedian
-
DOCUMENT ME!
- bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogMode
-
DOCUMENT ME!
- bySlice - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
-
A radio button to select calculation by VOI slice.
- BYTE - Enum constant in enum gov.nih.mipav.model.file.FileSVS.Type
-
8 bit unsigned
- BYTE - Enum constant in enum gov.nih.mipav.model.file.FileTiff.Type
-
8 bit unsigned
- BYTE - Enum constant in enum gov.nih.mipav.model.structures.ModelStorageBase.DataType
-
Data buffer is of type signed byte (8 bits per voxel).
- BYTE - Static variable in class gov.nih.mipav.model.file.FileLSM
-
TIFF Types.
- BYTE - Static variable in class gov.nih.mipav.model.file.FileSTK
-
TIFF Types.
- BYTE - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate that the data buffer is of type signed byte (8 bits per voxel).
- byte_bit_count - Static variable in class gov.nih.mipav.model.file.charls.golomb_code_match_table
- byte_offset_ - Variable in class gov.nih.mipav.model.file.charls.jpeg_stream_writer
- byte_order - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
- BYTE_STRING - Enum constant in enum gov.nih.mipav.model.file.FileDicomTagInfo.StringType
-
A string with VR "OB" is stored in the tag's value.
- BYTE_STRING - Static variable in class gov.nih.mipav.model.structures.ModelStorageBase
-
Used to indicate, as a String, that the data buffer is of type byte.
- byte2D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
- byte2DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
- byte3D - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
- byte3DC - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
- byteArray1 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
One byte array allocated once to speed process and reduced the need to reallocate memory.
- byteArray2 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
Two byte array allocated once to speed process and reduced the need to reallocate memory.
- byteArray4 - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Comms
-
Four byte array allocated once to speed process and reduced the need to reallocate memory.
- ByteArrayReader(byte[]) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
- ByteArrayReader(byte[], int) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteArrayReader
- ByteArrayReaderTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteArrayReaderTest
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileBioRad
-
DOCUMENT ME!
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
One byte array used to read/write in data so that one doesn't't need to be allocated with each read/write.
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileGESigna4X
-
DOCUMENT ME!
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileGESigna5X
-
DOCUMENT ME!
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileSTK
-
DOCUMENT ME!
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileSVS
-
DOCUMENT ME!
- byteBuffer - Variable in class gov.nih.mipav.model.file.FileTiff
-
DOCUMENT ME!
- ByteBuffer(int) - Constructor for class gov.nih.mipav.model.dicomcomm.DICOM_Comms.ByteBuffer
-
Allocates the byte buffer of the given size.
- byteBuffer2 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Two byte array used to read/write in data so that one doesn't't need to be allocated with each read/write.
- byteBuffer4 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Four byte array used to read/write in data so that one doesn't need to be allocated with each read/write.
- byteBuffer8 - Variable in class gov.nih.mipav.model.file.FileDicomBase
-
Eight byte array used to read/write in data so that they don't need to be allocated with each read/write.
- ByteConvert() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteConvert
- ByteConvertTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteConvertTest
- byteCount - Variable in class gov.nih.mipav.model.file.FileLSM.Index
-
DOCUMENT ME!
- byteCount - Variable in class gov.nih.mipav.model.file.FileSTK.Index
-
DOCUMENT ME!
- byteCount - Variable in class gov.nih.mipav.model.file.FileSVS.Index
-
DOCUMENT ME!
- byteCount - Variable in class gov.nih.mipav.model.file.FileTiff.Index
-
DOCUMENT ME!
- byteDoubleBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt
-
byte array for double *
- byteDoubleBuffer - Variable in class gov.nih.mipav.model.file.FileBase
-
byte array for double *
- byteFloatBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
-
byte array for float *
- byteFloatBuffer - Variable in class gov.nih.mipav.model.file.FileBase
-
byte array for float *
- byteFormat - Variable in class gov.nih.mipav.model.file.FileBioRad
-
if 1 data is UBYTE, otherwise data is SHORT.
- byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftClustering
-
byte array for int *
- byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
byte array for int *
- byteIntBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt
-
byte array for int *
- byteIntBuffer - Variable in class gov.nih.mipav.model.file.FileBase
-
byte array for int *
- byteLongBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
byte array for long *
- byteLongBuffer - Variable in class gov.nih.mipav.model.algorithms.libdt
-
byte array for long *
- byteLongBuffer - Variable in class gov.nih.mipav.model.file.FileBase
-
byte array for long *
- byteOrder - Variable in class gov.nih.mipav.model.file.FileDM3
-
DOCUMENT ME!
- bytePointer - Variable in class gov.nih.mipav.model.file.TIFFLZWDecoder
-
DOCUMENT ME!
- bytes_in_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.bitread_working_state
- bytes_in_buffer - Variable in class gov.nih.mipav.model.file.libjpeg.my_source_mgr
- bytes_left - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
- bytes_left - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
- bytes_read - Variable in class gov.nih.mipav.model.file.libjpeg.my_marker_reader
- bytes_read() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- bytes_used - Variable in class gov.nih.mipav.model.file.libjpeg.large_pool_struct
- bytes_used - Variable in class gov.nih.mipav.model.file.libjpeg.small_pool_struct
- bytes_written() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_encoder
- bytes_written() - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_writer
- bytes_written_ - Variable in class gov.nih.mipav.model.file.charls.scan_encoder
- byteShortBuffer - Variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
byte array for short *
- byteShortBuffer - Variable in class gov.nih.mipav.model.file.FileBase
-
byte array for short *
- bytesOut - Variable in class gov.nih.mipav.model.file.CBZip2OutputStream
- bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoDicom
-
Number of bytes per pixel.
- bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- bytesPerPixel - Variable in class gov.nih.mipav.model.file.FileInterfile
-
DOCUMENT ME!
- bytesPerPixelIndex - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- bytesPerRow - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
- bytesPerValue - Variable in class gov.nih.mipav.model.file.FileMGH
-
DOCUMENT ME!
- bytesToDouble(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase
-
Converts from bytes to double
- bytesToFloat(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase
-
Converts from bytes to float
- bytesToInt(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase
-
Converts from bytes to int
- bytesToShort(boolean, int, byte[]) - Static method in class gov.nih.mipav.model.file.FileBase
-
Converts from bytes to short
- bytesV - Variable in class gov.nih.mipav.model.file.FileDicom
- ByteTrie() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie
- ByteTrieNode() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteTrie.ByteTrieNode
- ByteTrieTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteTrieTest
- ByteUtil() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.ByteUtil
- ByteUtilTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.ByteUtilTest
- byteValue - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
- byteValue() - Method in class gov.nih.mipav.model.file.MetadataExtractor.Rational
-
Returns the value of the specified number as a
byte. - byTotalVOI - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics.JPanelStatisticsOptions
-
A radio button to select calculation by total VOI.
- byz - Variable in class gov.nih.mipav.model.structures.Voro.unitcell
-
The y coordinate of the third vector defining the periodic domain.
- byz - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The y coordinate of the third vector defining the periodic domain.
- bz - Variable in class gov.nih.mipav.model.structures.Voro
- bz - Variable in class gov.nih.mipav.model.structures.Voro.container_base
-
The maximum z coordinate of the container.
- bz - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
The maximum z coordinate of the container.
- bz - Variable in class gov.nih.mipav.model.structures.Voro.unitcell
-
The z coordinate of the third vector defining the periodic domain.
- bz - Variable in class gov.nih.mipav.model.structures.Voro.voro_base_unitcell
-
The z coordinate of the third vector defining the periodic domain.
- bz - Variable in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Quadric
- bz2in - Variable in class gov.nih.mipav.model.file.FileNIFTI
- BZETAC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- BZip2Constants - Interface in gov.nih.mipav.model.file
-
Base class for both the compress and decompress classes.
C
- c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmBarrelDistortion
- c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmRegionGrow
-
DOCUMENT ME!
- c - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVesselEnhancement
- c - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.ParameterIgnoringCostFunction
- c - Variable in class gov.nih.mipav.model.algorithms.CopyMoveAttackDetection2.block_data_list
- c - Variable in class gov.nih.mipav.model.algorithms.CubicEquation
- c - Variable in class gov.nih.mipav.model.algorithms.curev
- c - Variable in class gov.nih.mipav.model.algorithms.curfit
- c - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment.SP
- c - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- c - Variable in class gov.nih.mipav.model.algorithms.Hypergeometric
-
Input argument
- c - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
Parameter in the weight function, c !
- c - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
Parameter in the weight function, c !
- c - Variable in class gov.nih.mipav.model.algorithms.NelderMead.param_t
- c - Variable in class gov.nih.mipav.model.algorithms.registration.DemonsRegistrationLite
- c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEExtModel
- c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODEModel
- c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.ODERectModel
- c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODEHPModel
- c - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.ODESTModel
- c - Variable in class gov.nih.mipav.model.algorithms.splev
- c - Variable in class gov.nih.mipav.model.algorithms.sproot
- c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_mqc_t
- c - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_raw_t
-
temporary buffer where bits are coded or decoded
- c - Variable in class gov.nih.mipav.model.file.jxlatte.ChebyschevApproximation
- c - Variable in class gov.nih.mipav.model.file.libjpeg.arith_entropy_decoder
- c - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAW
-
The index of the component from where to get the data
- c - Variable in class gov.nih.mipav.model.structures.JCVoronoi.jcv_edge
- c - Variable in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
- c - Variable in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
- c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState
-
model parameters.
- c - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.delaunay.Edge
- c() - Method in class gov.nih.mipav.model.file.charls.regular_mode_context
- C - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTPSpline
-
DOCUMENT ME!
- C - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmKernelRegression
- C - Variable in class gov.nih.mipav.model.algorithms.libdt.Dytex
-
invalid input: '<' transition matrix
- C - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
- C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_L2_SvcFunction
- C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.L2R_LrFunction
- C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.Parameter
- C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.liblinearsvm.SolverMCSVM_CS
- C - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
- C() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry
-
Returns the corresponding model parameters.
- c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
- c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SoftLOneLoss
- c_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TolerantLoss
- c_ - Variable in class gov.nih.mipav.model.file.charls.regular_mode_context
- c_a(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
- C_AAMBUILDER - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- C_AAMBUILDER() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.C_AAMBUILDER
- C_AAMMODEL - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- C_AAMMODEL() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.C_AAMMODEL
- c_dzror - Variable in class gov.nih.mipav.model.algorithms.CDFLIB
- c_loop_all(Voro.container_poly_radius_poly) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_all
- c_loop_all(Voro.container_radius_mono) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_all
-
The constructor copies several necessary constants from the base container class.
- c_loop_all_periodic(Voro.container_periodic_poly_radius_poly) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_all_periodic
- c_loop_all_periodic(Voro.container_periodic_radius_mono) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_all_periodic
-
The constructor copies several necessary constants from the base periodic container class.
- c_loop_base(Voro.container_periodic_poly_radius_poly) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_base
- c_loop_base(Voro.container_periodic_radius_mono) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_base
- c_loop_base(Voro.container_poly_radius_poly) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_base
-
The constructor copies several necessary constants from the base container class.
- c_loop_base(Voro.container_radius_mono) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_base
- c_loop_order(Voro.container_poly_radius_poly, Voro.particle_order) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_order
- c_loop_order(Voro.container_radius_mono, Voro.particle_order) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_order
-
The constructor copies several necessary constants from the base class, and sets up a reference to the ordering class to use.
- c_loop_order_periodic(Voro.container_periodic_radius_mono, Voro.particle_order) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_order_periodic
-
The constructor copies several necessary constants from the base class, and sets up a reference to the ordering class to use.
- c_loop_subset(Voro.container_radius_mono) - Constructor for class gov.nih.mipav.model.structures.Voro.c_loop_subset
-
The constructor copies several necessary constants from the base container class.
- c_loop_subset_mode() - Constructor for enum gov.nih.mipav.model.structures.Voro.c_loop_subset_mode
- C_MAX_BLOCKS_IN_MCU - Static variable in class gov.nih.mipav.model.file.libjpeg
- c_next(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
- c_prev(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
- c_s(LSCM.HalfEdge) - Method in class gov.nih.mipav.model.algorithms.LSCM
- C_SVC - Static variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
- C_SVC - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
- c0 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
- c0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- c0 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- C0 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
coefficents for DAUB4 wavelet filter.
- C0_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
- C0_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
- c0max - Variable in class gov.nih.mipav.model.file.libjpeg.box
- c0min - Variable in class gov.nih.mipav.model.file.libjpeg.box
- c1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
-
Reference: Adaptive and integrated neighborhood-dependent approach for nonlinear enhancement of color images by Li Tao and Vijayan K.
- c1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- c1 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
- c1 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- c1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- c1 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- c1 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
- C1 - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- C1 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
private double BIG = 3.0E137; // 3.0E37.
- C1 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- C1_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
- C1_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
- c12 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- C1CHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- C1d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- c1Factor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
-
DOCUMENT ME!
- c1max - Variable in class gov.nih.mipav.model.file.libjpeg.box
- c1min - Variable in class gov.nih.mipav.model.file.libjpeg.box
- c2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
- c2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- c2 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.TriangleDetails
- c2 - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- c2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- c2 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- c2 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
-
DOCUMENT ME!
- C2 - Variable in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
- C2 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- C2 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- C2_SCALE - Variable in class gov.nih.mipav.model.file.libjpeg
- C2_SHIFT - Variable in class gov.nih.mipav.model.file.libjpeg
- c20 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- C2CHI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- C2d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- c2max - Variable in class gov.nih.mipav.model.file.libjpeg.box
- c2min - Variable in class gov.nih.mipav.model.file.libjpeg.box
- c2x - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- c2y - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- c2z - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- c3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmAINDANE
- c3 - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- c3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- c3 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd7_impl
- c3 - Variable in class gov.nih.mipav.view.dialogs.JDialogAINDANE
- C3 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- C3 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- C3d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- c3Factor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
-
DOCUMENT ME!
- c3x - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- c3y - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- c3z - Variable in class gov.nih.mipav.view.dialogs.JDialogPowerPaint
-
DOCUMENT ME!
- c4 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- c4 - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
coefficients for the PWT filter.
- C4 - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- C4 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
- C4 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
- C4C6 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
- C4C6 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
- C4d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- C4Q - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
- C4Q - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
- C4R - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
- C4R - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
- c5 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- C5d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- c6 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- C6 - Variable in class gov.nih.mipav.model.file.FileSVS.JPEGFastDCTInputStream
- C6 - Variable in class gov.nih.mipav.model.file.FileTiff.JPEGFastDCTInputStream
- C6d - Variable in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
DOCUMENT ME!
- c7 - Variable in class gov.nih.mipav.model.algorithms.Erfinv.ppnd16_impl
- ca - Variable in class gov.nih.mipav.model.file.FileMGH
-
DOCUMENT ME!
- ca_bckpbCrt - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_ckpntData - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_firstCVodeBcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_firstCVodeFcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMfree - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMget - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMinterpSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMmalloc - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMmallocDone - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMnewData - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMstore - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMstoreSensi - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_IMtype - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_nbckpbs - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_nckpnts - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_np - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_nsteps - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_T - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_tfinal - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_tinitial - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_tstopCVodeF - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_tstopCVodeFcall - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_Y - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_YS - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_yStmp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- ca_ytmp - Variable in class gov.nih.mipav.model.algorithms.CVODES.CVadjMemRec
- CAAMAnalyzeSynthesize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMAnalyzeSynthesize(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesize
-
Constructor
- CAAMAnalyzeSynthesizeSoftware - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMAnalyzeSynthesizeSoftware(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMAnalyzeSynthesizeSoftware
-
Constructor
- CAAMAnalyzeSynthesizeSoftware.sWarpEntry - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
- CAAMBuilder - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMBuilder() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Constructor.
- CAAMConsole - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsole(int, String[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsole
-
Console interface to pass the augments to varies modes
- CAAMConsoleMode - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleMode() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode
-
constructor
- CAAMConsoleMode(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleMode
-
Constructor
- CAAMConsoleModeB - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeB() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB
-
Constructor
- CAAMConsoleModeB(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeB
-
Constructor
- CAAMConsoleModeCM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeCM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeCM
-
Constructor
- CAAMConsoleModeD - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeD(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeD
-
Constructor, Debug/Test console mode, not used.
- CAAMConsoleModeE - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeE() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE
-
Constructor.
- CAAMConsoleModeE(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeE
-
Constructor.
- CAAMConsoleModeLOO - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeLOO(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeLOO
-
Constructor
- CAAMConsoleModeM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeM
-
Constructor.
- CAAMConsoleModeP - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeP(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeP
-
Constructor
- CAAMConsoleModeR - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeR(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeR
-
Constructor.
- CAAMConsoleModeREG - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeREG(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeREG
-
Constructor.
- CAAMConsoleModeS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeS(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeS
-
Constructor.
- CAAMConsoleModeSM - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeSM(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeSM
-
Constructor.
- CAAMConsoleModeT - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeT(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeT
-
Constructor.
- CAAMConsoleModeU - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeU(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeU
-
Constructor.
- CAAMConsoleModeW - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMConsoleModeW(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMConsoleModeW
-
Constructor.
- CAAMDeform - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMDeform() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeform
- CAAMDeformPCA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMDeformPCA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
- CAAMDelaunay - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMDelaunay() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDelaunay
-
constructor
- CAAMEvalRes - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMEvalRes(CAAMShape, CAAMShape, double, CAAMOptRes) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvalRes
-
Constructor Compute the evaluation optimization results.
- CAAMEvaluationResults - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMEvaluationResults() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMEvaluationResults
- CAAMInitCandidates(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates
-
Allocates a pool with room for 'n' candidates.
- CAAMInitEntry(double, CAAMShape, CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitEntry
-
Constructor
- CAAMInitialize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMInitialize() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize
-
Constructor.
- CAAMInitialize(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitialize
-
Copy constructor.
- CAAMInitializeStegmann - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMInitializeStegmann(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann
-
Constructor.
- CAAMInitializeStegmann(CAAMModel, ModelImage, ModelImage, CAAMShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann
-
AAM initialization from given aam model, target imge, and sample image and VOI
- CAAMInitializeStegmann.CAAMInitCandidates - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
Initialization candidate containiner.
- CAAMInitializeStegmann.CAAMInitEntry - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
Container for initialization results.
- CAAMLinearReg - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMLinearReg() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLinearReg
-
constructor
- CAAMLowerBounds - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMLowerBounds() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds
-
Constructor.
- CAAMLowerBounds(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMLowerBounds
-
Constructor
- CAAMMathUtil - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMMathUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil
- CAAMMesh - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMMesh() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh
-
Constructor.
- CAAMMesh(CAAMMesh) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMesh
-
Copy constructor.
- CAAMModel - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMModel() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
-
Constructor.
- CAAMModel(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModel
-
Copy constructor.
- CAAMModelMS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMModelMS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelMS
-
Default multi-scale constructor.
- CAAMModelSeq - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMModelSeq() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMModelSeq
-
Default multi-scale constructor.
- CAAMObject - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMObject() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMObject
- CAAMOptimize - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMOptimize(CAAMModel, CAAMShape, ModelSimpleImage, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptimize
-
Constructor for the AAM optimizer.
- CAAMOptRes - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMOptRes() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes
-
Constructor
- CAAMOptRes(double, int, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptRes
-
Constructor
- CAAMOptState - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMOptState() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState
-
Constructor
- CAAMOptState(double, CAAMShape, CDVector, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMOptState
-
Constructor
- CAAMPoint - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMPoint() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint
-
Constructor
- CAAMPoint(double, double) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPoint
-
Constructor
- CAAMPointInfo - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMPointInfo() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo
-
Constructor
- CAAMPointInfo(int, int, int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPointInfo
-
Constructor
- CAAMPropsReader - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMPropsReader(String) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader
-
Constructor.
- CAAMReferenceFrame - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMReferenceFrame() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame
-
Constructor.
- CAAMReferenceFrame(CAAMReferenceFrame) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame
-
Copy constructor.
- CAAMReferenceFrame.sScanLinePart - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
defines a sub-part of a horizontal line in an image
- CAAMShape - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMShape() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Default constructor.
- CAAMShape(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Constructs a shape with 'nbPoints' points.
- CAAMShape(CAAMShape) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Copy contructor.
- CAAMShape(CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Constructs a shape from a vector.
- CAAMShapeCollection - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMShapeCollection() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShapeCollection
-
Constructor.
- CAAMTest - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMTest() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTest
-
Constructor.
- CAAMTFIdentity - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMTFIdentity() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFIdentity
-
Constructor
- CAAMTFLookUp - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMTFLookUp() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFLookUp
-
Constructor.
- CAAMTFUniformStretch - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMTFUniformStretch() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTFUniformStretch
-
Constructor.
- CAAMTransferFunction - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMTransferFunction() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTransferFunction
-
Contructor
- CAAMTriangle - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMTriangle() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
-
Constructor
- CAAMTriangle(int, int, int, Vector<CAAMPoint>) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
-
Constructor
- CAAMUtil - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMUtil() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
- CAAMVisualizer - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMVisualizer(CAAMModel) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMVisualizer
-
Constructor.
- CAAMWarp - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMWarp() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarp
-
Constructor
- CAAMWarpLinear - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CAAMWarpLinear(boolean) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMWarpLinear
-
Constructor.
- cache - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.ONE_CLASS_Q
- cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVC_Q
- cache - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.SVR_Q
- cache - Variable in class gov.nih.mipav.model.file.jxlatte.Bitreader
- cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.ONE_CLASS_Q
- cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVC_Q
- cache - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.SVR_Q
- Cache - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
-
Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved.
- Cache(int, long) - Constructor for class gov.nih.mipav.model.algorithms.LIBSVM.Cache
- Cache(int, long) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Cache
- cache_detMt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
-
invalid input: '<' cache for an instantiated Kalman filter: Kalman gain matrices [n x m x tau].
- cache_dt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
-
invalid input: '<' cache for an instantiated Kalman filter: inverse covariance matrix [m x m x tau].
- cache_invMt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
-
invalid input: '<' cache for an instantiated Kalman filter: determinant term [1 x tau].
- cache_Kt - Variable in class gov.nih.mipav.model.algorithms.libdt.DytexKalmanFilter
- cache_size - Variable in class gov.nih.mipav.model.algorithms.LIBSVM.svm_parameter
- cache_size - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.svm_parameter
- CACHE_SIZE - Variable in class gov.nih.mipav.model.algorithms.Fastfit
- cache_t_bit_count - Variable in class gov.nih.mipav.model.file.charls.scan_decoder
- Cache.head_t - Class in gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm
- cacheBits - Variable in class gov.nih.mipav.model.file.jxlatte.Bitreader
- CACHED_MAX_DEBUG_LINES - Static variable in class gov.nih.mipav.view.Preferences
-
Constant used to identify the maximum number of lines in the debugging panel.
- cachedClass - Variable in class gov.nih.mipav.plugins.JarClassLoader
- cachedTab - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
-
Cached value of selected tab
- cacheRaster(WritableRaster) - Method in class gov.nih.mipav.model.algorithms.ContourPlot.BarycentricGradientPaintContext
- cadvise() - Static method in class gov.nih.mipav.model.file.CBZip2InputStream
- caField - Variable in class gov.nih.mipav.view.dialogs.JDialogSaveVistaParams
-
textfields
- cal_max - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze
-
Range of calibration values.
- cal_max - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
-
The cal_min and cal_max fields (if nonzero) are used for mapping (possibly scaled) dataset values to display colors: - Minimum display intensity (black) corresponds to dataset value cal_min. - Maximum display intensity (white) corresponds to dataset value cal_max. - Dataset values below cal_min should display as black also, and values above cal_max as white. - Colors "black" and "white", of course, may refer to any scalar display scheme (e.g., a color lookup table specified via aux_file). - cal_min and cal_max only make sense when applied to scalar-valued datasets (i.e., dim[0] invalid input: '<' 5 or dim[5] = 1).
- cal_max - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText
-
Range of calibration values.
- cal_max - Variable in class gov.nih.mipav.model.file.FileInfoSPM
-
DOCUMENT ME!
- cal_min - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze
-
Values of 0.0 for both fields imply that no calibration min and max values are used !
- cal_min - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
-
values of 0.0 for both fields imply that no calibration min and max values are used !
- cal_min - Variable in class gov.nih.mipav.model.file.FileInfoSiemensText
-
Values of 0.0 for both fields imply that no calibration min and max values are used !
- cal_min - Variable in class gov.nih.mipav.model.file.FileInfoSPM
-
DOCUMENT ME!
- cal_units - Variable in class gov.nih.mipav.model.file.FileInfoAnalyze
-
Specifies the name of the calibration unit.
- cal_units - Variable in class gov.nih.mipav.model.file.FileInfoSPM
-
DOCUMENT ME!
- calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmEllipticFourierDescriptors
-
Prepares the data and runs the algorithm for a 2D or 3D image.
- calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
-
Find the midsagittal line and transform the source image to align it along that line vertically.
- calc() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMinimumPerimeterPolygon
-
Prepares the data and runs the algorithm for a 2D or 3D image.
- calc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateDGaussian
-
Starts the Gaussian calculation.
- calc(boolean) - Method in class gov.nih.mipav.model.algorithms.GenerateGaussian
-
Starts the Gaussian calculation.
- calc(ModelImage, ModelImage, ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmMaximumLikelihoodIteratedBlindDeconvolution
-
Performs a AlgorithmImageCalculator calculation on the two input images.
- calc_binomials(int, int, double[][]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
- calc_binomials(int, int, DoubleDouble[][]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- calc_clustering_acc - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- Calc_dD() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
-
Cache function.
- calc_entropy(int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- calc_nls_nmf(Matrix, Matrix, double) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- calc_nmi(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- calc_powers(double, int, double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
- calc_powers(QuarticEquation.complex_t, int, QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
- calc_powers(QuarticEquationEP.complex_t, int, QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- calc_powers(DoubleDouble, int, DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- calc_purity(int[], int[]) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- calc_shifted_coefs(double, int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
- calc_shifted_coefs(QuarticEquation.complex_t, int, QuarticEquation.complex_t[], QuarticEquation.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquation
- calc_shifted_coefs(QuarticEquationEP.complex_t, int, QuarticEquationEP.complex_t[], QuarticEquationEP.complex_t[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- calc_shifted_coefs(DoubleDouble, int, DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.QuarticEquationEP
- calc_symmetry - Variable in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization.opt
- calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Prepares the data and runs the algorithm for a 3D image.
- calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Prepares the data and runs the algorithm for a 3D image on a slice by slice basis.
- calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
-
calc25D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
- calc25D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
-
calc25D - calculates the diffused image and creates the new VOI for the original image.
- calc25D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Prepares the data and runs the algorithm for a 2D image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
-
Prepares the data and runs the algorithm for a 2D image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake
-
Prepares the data and runs the algorithm for a 2D image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
-
calc2D - calculates the diffused image and creates the new VOI for the original image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Prepares the data and runs the algorithm for a 2D image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
-
calc2D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
-
calc2D - calculates the diffused image and creates the new VOI for the original image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
-
Prepares the data and runs the algorithm for a 2D image.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed
-
Calculates the watershed intialized by the VOI regions.
- calc2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
- calc2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
- calc2DBWStats() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- calc2DColorStats() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- calc34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmQuantifyMask
- Calc34D(VOI) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
- calc35D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmMidsagittal
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Prepares the data and runs the algorithm for a 3D image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSmooth
-
Prepares the data and runs the algorithm for a 3D image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmBSnake
-
Prepares the data and runs the algorithm for a 3D image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmFastMarching
-
calc3D - calculates the diffused image and creates the new VOI for the original image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Prepares the data and runs the algorithm for a 3D image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSet
-
calc3D - Calculates level set from contours, propagates level set, and obtains new contour voi from level set.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLevelSetDiffusion
-
calc3D - calculates the diffused image and creates the new VOI for the original image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSnake
-
Prepares the data and runs the algorithm for a 3D image.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmWatershed
-
Calculates the watershed intialized by the VOI regions.
- calc3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmIsophoteCurvature
- calc3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmSWI
- calcAsymmetryIndex(int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
- calcAvgIntenStdDev() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
-
computes the avg intensity got 2d and 3d greyscale and color images
- calcAxisOrientation(int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Calculate the new image AxisOrientation, based on re-ordering the axes using axisOrder and axisFlip.
- calcBand(TransferFunction, float[]) - Method in class gov.nih.mipav.model.structures.ModelLUT
-
Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
- calcButton - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Performs statistics calculations
- calcButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Calculat button.
- calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
If true calculate the center of gravity (mass) and use the difference to intialize the translation.
- calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
If true calculate the center of gravity (mass) and use the difference to intialize the translation.
- calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
If true calculate the center of gravity (mass) and use the difference to intialize the translation.
- calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
If true calculate the center of gravity (mass) and use the difference to intialize the translation.
- calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
If true calculate the center of gravity (mass) and use the difference to intialize the translation.
- calcCOG - Variable in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
If true calculate the center of gravity (mass) and use the difference to intialize the translation.
- calcCOG - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- calcCOG - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
DOCUMENT ME!
- calcCOGCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
DOCUMENT ME!
- calcCOGCheckbox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
DOCUMENT ME!
- calcColor2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
- calcColor2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
- calcColor3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationEM
-
This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
- calcColor3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
- calcColorA - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- calcColorAStart - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- calcColorB - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- calcColorBStart - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- calcColorEnd - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- CalcConvexHull() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMShape
-
Calculates the convex hull of each path in the shape.
- calcCropped() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeCrop
- calcDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmDistanceFilter
- calcEigenVectorFA() - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTI2EGFA
-
Calculates the eigen vector data from the DTI.
- calcEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
-
Calls AlgorithmDTI2EGFA to create an Apparent Diffusion Coefficient Image, Functional Anisotropy Image, Color Image, Eigen Value Image, Eigen Vector Image, Relative Anisotropy Image, Trace Image, and Volume Ratio Image.
- calcEigenVectorImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JDialogDTIInput
-
Calls AlgorithmDTI2EGFA to create eigen vector and functional anisotropy images.
- CalcElementVar(Vector<CDVector>, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil
-
Wrapper to calculate element variables.
- CalcElementVar(Vector<CDVector>, CDVector, CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMMathUtil
-
Calculates the variance of each component in a set of vectors.
- calcEntropy() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
- calcEntropy(ModelSimpleImage, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
- calcEntropy(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
DOCUMENT ME!
- calcEntropy(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
DOCUMENT ME!
- calcEntropy(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
DOCUMENT ME!
- calcEntropy(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
DOCUMENT ME!
- calcEntropySmoothed(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
DOCUMENT ME!
- calcEntropySmoothed(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
DOCUMENT ME!
- calcEntropySmoothed(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
DOCUMENT ME!
- calcEntropySmoothed(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
DOCUMENT ME!
- calcEntropySmoothedWgt(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
DOCUMENT ME!
- calcEntropySmoothedWgt(TransMatrixd, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
DOCUMENT ME!
- calcEntropySmoothedWgt(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions
-
DOCUMENT ME!
- calcEntropySmoothedWgt(TransMatrix, double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmCostFunctions2D
-
DOCUMENT ME!
- calcError(TransMatrix) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
- calcError(TransMatrixd) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
- calcFFT(float[], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
- calcFFT25D(float[][], boolean) - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmFFT
- calcGradMag() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
-
DOCUMENT ME!
- calcGroup - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps
-
The top-level group of threads used for calculating.
- calcGVF(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Calculate GVF from image buffer.
- calcGVF(int, float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Calculate GVF from image buffer.
- calcGVF3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmObjectExtractor
-
Calculate GVF from 3D image buffer.
- calcGVF3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmAGVF
-
Calculate GVF from 3D image buffer.
- calcGVF3D(float[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmGVF
-
Calculate GVF from 3D image buffer.
- calcHistogram() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold
-
DOCUMENT ME!
- calcHistogram(int, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoLUT
-
Deprecated.Calculates histogram for the image(s).
- calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.renderer.JPanelHistoRGB
-
Deprecated.Calculates histogram for the image(s).
- calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.Calculates histogram for the image(s).
- calcHistogram(int, boolean, boolean) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calculates histogram for the image(s).
- calcHistogram(ModelImage, boolean, int) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Calculates histogram for the image(s).
- calcHistogram(ModelImage, int) - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Calculates histogram for the image(s).
- calcHistogram(ModelImage, int, int) - Method in class gov.nih.mipav.view.JPanelVolumeOpacity
-
Calculates histogram for the imageA, B.
- calcHistogramGM() - Method in class gov.nih.mipav.view.renderer.JPanelVolOpacityRGB
-
Deprecated.Calculates the histogram for the color images GM.
- calcHistograms() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Calculates histogram for the imageA, B.
- calcHistogramsGM() - Method in class gov.nih.mipav.view.renderer.J3D.JPanelVolOpacity
-
Deprecated.Calculates histogram for the gradient magnitude imageA, B.
- calcImageNormals() - Method in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
Create array of normal vectors corresponding to the voxels in the volume.
- calcImagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Calculate the individual image panel size based on the current magnification of the image.
- calcImagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Calculate the individual image panel size based on the current magnification of the image.
- calcInBuffer2D(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Calculates the laplacian medianess of a 2D image and returns it as a float buffer.
- calcInBuffer2D(float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Calculates the gradient magnitude of a 2D image and returns it as a float buffer.
- calcInBuffer2DUnnormalized(float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Calculates the gradient magnitude of a 2D image and returns it as a float buffer.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
Histogram matching of the source image to the base image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
-
Histogram equalizing of slices to reference slice.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
Generates the new data and places in the source image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
-
Calculates the VOI extraction.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtractionPaint
-
Calculates the VOI extraction.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
-
Filters the source image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
This function replaces the original image with a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
This function replaces the original image with a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization
-
Filters the source image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmDicomOrder
-
Calculates the dicom ordered image and replaces the original image with the dicom ordered image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
Runs the calculation and stores the result into the same source buffer.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
Generates the new data and places in the source image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRandSliceOrder
-
Forms the reversed order image and places the result in original image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices
-
Calculates the final output and stores it in the source image.
- calcInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRotate
-
Calculates the rotated image and replaces the source image with the rotated image.
- calcInPlace(int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip
-
Generates the flipped image and replaces the source image with the flippeded image.
- calcInPlace2() - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIExtraction
-
From text description in 4th edition Image Processing, Analysis, and Machine Vision International Edition by Milan Sonka, Vaclav Hlavac, and Roger Boyle, Algorithm 6.6 Inner Boundary Tracing, pp. 191-192.
- calcInPlace25D(BitSet, float, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace25D(BitSet, float, int, Vector<Integer>, boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace25DC(BitSet, Color, int, String, Vector<Integer>, boolean) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the color source image with fill color.
- calcInPlace25DCMask(BitSet, Color, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the color source image with fill color.
- calcInPlace25DMask(BitSet, float, int) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace25DMask(BitSet, float, int, Vector<Integer>) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
Histogram equalization on the source image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
Histogram equalization on the source image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass
-
Calculate center of mass of 2D black and white image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB
-
Calculate red, green, and blue centers of mass for 2D color image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
Replace 2D source image with the thresholded image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB
-
Replace 2D source image with the thresholded image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
Mean filters the source image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Median filters the source image.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType
-
This function replaces the source image with the new type image and new data range.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of source image with fill value.
- calcInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
-
This function replaces the 2D source image with an image that has noise added to it.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Calculates the gradient image and replaces the source image with the new image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
-
Calculates the diffused image and replaces the source image with the diffused image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Calculates the blurred image and replaces the source image with the blurred image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Calculates the gradient image and replaces the source image with the new image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
Calculates the Laplacian image and replaces the source image with the new image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter
-
Calculates the Morphological Filter image and replaces the source image with the new image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
-
Calculates the non-maximum suppression image and replaces the source image with the new image.
- calcInPlace2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
-
calculates the blurred image and replaces the source image with the blurred image.
- calcInPlace2DBuffer(int, float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Calculates the Laplacian image and replaces the source image with the new image.
- calcInPlace2DBuffer(int, float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Calculates the gradient image and returns a float buffer with the new values.
- calcInPlace2DBufferUnnormalized(int, float[], int[], boolean, float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Calculates the gradient image and returns a float buffer with the new values.
- calcInPlace2DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of source image with fill value.
- calcInPlace2DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of source image with fill value.
- calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
Replace 3D or 4D source image with the thresholded image.
- calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB
-
Replace 3D or 4D source image with the thresholded image.
- calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
Calculates the gradient magnitude image and replaces the source image with the new image.
- calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType
-
This function replaces the source image with the new type image and new data range.
- calcInPlace34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
-
This function replaces the 3D or 4D source image with an image that has noise added to it.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
Histogram Equalization on the source image and replaces the source image with the processed image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
Histogram Equalization on the source image and replaces the source image with the processed image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMass
-
Calculate center of mass of 3D black and white image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB
-
Calculates red, green, and blue centers of mass in 3D color image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Calculates the Laplacian and replaces the source image with the new image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
-
Calculates the diffused image and replaces the source image with the diffused image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Calculates the blurred image and replaces the source image with the blurred image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
Calculates the Laplacian and replaces the source image with the new image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
Mean filters the source image and replaces the source image with the mean filtered image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Median filters the source image and replaces the source image with the median filtered image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter
-
Calculates the Morphological Filter and replaces the source image with the new image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
-
Calculates the non-maximum suppression and replaces the source image with the new image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
-
calculates the UnsharpMask and replaces the source image with the new image.
- calcInPlace3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace3DBuffer(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
Calculates the Laplacian image and replaces the source image with the new image.
- calcInPlace3DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace3DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace4D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Calculates the blurred image and replaces the source image with the blurred image.
- calcInPlace4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace4DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlace4DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills VOI of the source image with fill value.
- calcInPlaceBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Replaces the original image with the Median filtered image.
- calcInPlaceBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Mode filters the 2D source image.
- calcInPlaceBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Mode filters the source image and replaces the source image with the mode filtered image.
- calcInPlaceBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Mode filters the 3D source image and replaces it with the mode filtered image.
- calcInPlaceColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
Generates the new data and places in the source image.
- calcInPlaceColor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
- calcInPlaceComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
Generates the new data and places in the source image.
- calcIntensity(ModelImage, int) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Calculated the total intensity contained within this contour.
- calcIntensity(ModelImage, Vector3f, float, float, JPanelPixelExclusionSelector.RangeType) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Finds values contained within this contour, based on the rangeFlag, ignorMin and ignoreMax.
- calcIntensityThreshold(ModelImage, float, int) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Calculates the total intensity contained within this contour, equal to of greater than the threshold.
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
- calcj(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
- calcjTest(int, int, double[], int, double[][], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
- calcLargestDistance(BitSet, int[], float[]) - Method in class gov.nih.mipav.model.structures.VOI
-
Calculate the distance of the largest line segment contained entirely within the VOI
- calcLargestDistance(BitSet, int[], float, float, float, float[], float[], float[], Vector3f, Vector3f) - Static method in class gov.nih.mipav.model.structures.VOI
- calcLargestSliceDistance(int[], float[], Vector3f, Vector3f) - Method in class gov.nih.mipav.model.structures.VOIContour
-
Calculate the distance of the largest line segment contained entirely within the slice of the VOI
- calcLevelSliderMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
- calcLineMin() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
- calcLineMinimization() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.ImageRegistrationGPU
- calcLowerResol() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop
-
This method calculates the lower X, lower Y, and lower Z coordinates(millimeters) for the CROP VOI region.
- calcLSBox - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
DOCUMENT ME!
- CalcMaskImage(boolean) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame
-
Calculates a reference mask image.
- CalcMaxAperture(int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.OlympusEquipmentMakernoteDescriptor
- calcMaxNormColors(ModelImage, int) - Method in class gov.nih.mipav.view.PatientSlice
-
calculates the color normalization factors.
- calcMaxNormColors(ModelImage, Color3f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.SurfaceMask
-
calculates the color normalization factors
- calcMaxPagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Calculate the maximum page panel size based on the screen size, the size of the menubar and toolbars and whether the columns or rows are independent.
- calcMaxPagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Calculate the maximum page panel size based on the screen size, the size of the menubar and toolbars and whether the columns or rows are independent.
- calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelImage
-
Calculates the min and max values for the image array.
- calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelSimpleImage
-
Calculates the min and max values for the image array.
- calcMinMax() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
-
Calculates the min and max values for the image array.
- calcMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogCTPreset
-
Calculate the maximum and minimum valuse to setup the window and level sliders.
- calcMinMax() - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Calculate the maximum and minimum valuse to setup the window and level sliders.
- calcMinMax(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
- calcMinMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Calculate the image range bounds for transfer function determination.
- CalcMinMaxEdgeLength(TriMesh) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
- calcMinMaxMag(boolean) - Method in class gov.nih.mipav.model.structures.ModelStorageBase
-
Calculates the min and max magnitude values for the image array.
- calcMinMaxNonZero() - Method in class gov.nih.mipav.model.structures.ModelStorageBase
-
Calculates the min and max nonzero values for the image array.
- calcMinMaxSlice(float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNLNoiseReduction
-
Calculates the min and max values for the image array, so that the image is displayed properly.
- calcMinMaxSlope(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
- calcMIPBuffer(int, int, int) - Method in class gov.nih.mipav.view.ViewJFramePaintVasculature
-
Generates a MIP image from the volume.
- calcMSE() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
- calcNormals() - Method in class gov.nih.mipav.model.algorithms.filters.OpenCL.filters.OpenCLAlgorithmVolumeNormals
-
Calculates the volume normals from the input source ModelImage.
- CalcNParam(double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMDeformPCA
-
Calulates the needed number of parameters to retain 'retained_variance'.
- calcNumPages() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Calculate the number of pages.
- calcObjX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Calculate the world X coordinates from input MouseEvent coordinates.
- calcObjY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Calculate the world Y coordinates from input MouseEvent coordinates.
- calcOriginalMarker(int) - Method in class gov.nih.mipav.model.file.FileAfni
-
DOCUMENT ME!
- calcPagePanelSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Calculate the size of the page Panel.
- calcPagePanelSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Calculate the size of the page Panel.
- calcPaintedVolume(String) - Method in class gov.nih.mipav.view.ViewJComponentEditImage
-
Calculates the volume of the painted voxels.
- CalcPixel2ShapeWeights() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMBuilder
-
Calculates the pixel-to-shape weights used in the combined PCA.
- calcQuadSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction
-
Calculates quad surface.
- calcQuadSurface(boolean) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface
-
Calculates quad surface.
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt2D.FitOAR2DNL2solModel
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmELSUNCOpt3D.FitOAR3DNL2solModel
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitDoubleExponentialNoWholeNL2solModel
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitPure1DNoWholeModel
-
Fit to function - a1 + (1 - a1)*[1 - 1/sqrt(1 + 4*PI*a0*x)].
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitSingleExponentialNoWholeModel
-
Fit to function - bottom + (1 - bottom)*[1 - exp(-ln(2)*t/thalf)] a1 + (1 - a1)*(1 - exp(-ln(2)*t/a0)).
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solInt2
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmFRAP.FitWholeNL2solModel
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitAllNL2
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmSM2.FitSM2nl2solModel
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
- calcr(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping2.stpfun2
- calcRBSpline(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice
-
Reslice data is Cubic Bspline where.
- calcRCUBIC(float) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReslice
-
Reslice using cubic convolution reslice where.
- calcRGBBand(TransferFunction, float[]) - Method in class gov.nih.mipav.model.structures.ModelRGB
-
Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
- calcRGBIntensity(ModelImage, int) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Calculates the total intensity contained within this contour for the input color channel.
- calcRGBIntensity(ModelImage, ColorRGB, ColorRGB, ColorRGB, float, float, float, float, float, float, JPanelPixelExclusionSelector.RangeType) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Finds values contained within this contour, based on the rangeFlag, ignoreMinR, ignoreMaxR, ignoreMinG, ignoreMaxG, ignoreMinB, and ignoreMaxB.
- calcRGBIntensityThreshold(ModelImage, int, float) - Method in class gov.nih.mipav.model.structures.VOIBase
-
Calculates the total intensity contained within this contour for the input color channel, that is greater than or equal to the input threshold value.
- calcrTest(int, int, double[], int[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.NL2sol
- calcSalScale1D(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- calcSalScale1DAA(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- calcSalScale1DParzen(short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- calcSalScale2D(short[], short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- calcSalScale3D(short[], short[], short[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmScaleSaliency
- CalcScanLines() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMReferenceFrame
-
Calculates the scanlines of the mask image.
- calcScreenSize() - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameRenderCamera
-
Calculate the screen size in pixels.
- calcScreenSize() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
Calculate the screen size in pixels.
- calcScreenX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Calculate the screen X coordinates from input world coordinates.
- calcScreenY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Calculate the screen Y coordinates from input world coordinates.
- calcSelectedVOI - Variable in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
-
The VOI being used just for this calculation (may be a single curve of a single slice or entire VOI
- CalcShapeDistances(CAAMShape, CAAMShape, double[], double[], CDVector) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMPropsReader
-
Calculates optimization results.
- CalcShapeDistances(CAAMShape, CAAMShape, double[], double[], CDVector) - Static method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMUtil
-
Calculates optimization results.
- calcShearWarpImage(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
Transform the image into shear warp image, which has the same resolution.
- calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUItemType
-
Calculates the PDU item type size.
- calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUType
-
Calculates the size of this PDU type.
- calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUTypeBase
-
These methods must be implemented by each class that extends this class.
- calcSize() - Method in class gov.nih.mipav.model.dicomcomm.DICOM_UserInformation
-
Calculates the PDU item type size.
- calcSlopeAndB() - Method in class gov.nih.mipav.view.dialogs.JDialogVOISplitter
- calcStartLocations(float[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Calculates the new start locations based on image orientation.
- calcStats - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIFiberTracking
- calcStatsPerContour(FileInfoBase, VOIBase, int, String, String, float, float, VOIStatisticalProperties, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
-
Calculates statistics for a single contour.
- calcStatsPerContourRGB(FileInfoBase, VOIBase, int, String, String, float, float, float, float, float, float, VOIStatisticalProperties, int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
-
Calculates statistics for a single contour.
- calcStatsTotal(VOI, VOIStatisticalProperties, FileInfoBase, String, String, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
-
Calculates the statistics for the VOI as a whole (across all contours within the VOI).
- calcStatsTotalRGB(VOI, VOIStatisticalProperties, FileInfoBase, String, String, float, float, float, float, float, float) - Method in class gov.nih.mipav.model.algorithms.AlgorithmVOIProps.Calc34D
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
This function produces a 2D histogram image with srcImage values represented across the x axis and baseImage values represented across the y axis.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramMatch
-
This function produces a new image that has had itself histogram matched to the base image. places filtered image in the destination image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogramSliceMatch
-
This function produces a new image that has had all slices histogram equalized to reference slice. places filtered image in the destination image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
Generates the new data and places in a new (destination) image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmColorEdge
-
This function produces a color edged image into a ModelImage that does not replace the original image-data.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction
-
This function produces a new image that has had edge extraction by FIRE operators
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
This function produces a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
This function produces a new image that is either the FFT, the filtered FFT, or the inverse FFT of the original or filtered image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji
-
This function produces a new image that has had fuzzy minimization filtering
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization
-
This function produces a new image that has had fuzzy minimization filtering
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLocalNormalization
-
This function produces a local-normalized image into a ModelImage that does not replace the original image-data.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement
-
This function produces a new image that has had rule based contrast enhancement
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins
-
Adds image margins and stores result in destImage.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat
-
Concatenate the image and store the results in the destination image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Calculates the gray scale image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices
-
DOCUMENT ME!
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
Runs the calculation and stores it in a new ModelImage.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
Generates the new data and places in a new (destination) image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRemoveSlices
-
Calculates the final output and puts it in a destination image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue
-
Replace the values and store into a new image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
-
Concatenate the image and store the results in the destination image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Calculates the gray scale image.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGrays
-
Calculates the new images.
- calcStoreInDest() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoHSB
-
Calculates the new images.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
This function produces a new image that has had itself histogram equalized. places filtered image in the destination image.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
This function produces a new image that has had itself histogram equalized. places filtered image in the destination image.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
Stores the thresholded image into the destination image.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB
-
Stores the thresholded image into the destination image.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
This function produces a new image that has been mean filtered and places filtered image in the destination image.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
This function produces a new image that has been median filtered and places filtered image in the destination image.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType
-
This function produces a new image with the new data type and new data range.
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
This function produces a new image that has been cropped!
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
-
This function produces a new 2D image that is the sum of the source image and noise.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
This function produces the Laplacian of input image.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
-
Calculates the diffused image and stores the resultant diffused image in the destination image model.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
This function produces a new image that has been blurred.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
This function produces the gradient magnitude of input image.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
This function produces the Laplacian of input image.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter
-
This function produces the Morphological Filter of input image.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
-
This function produces the non-maximum suppression of input image.
- calcStoreInDest2D(int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
-
this function produces a new image that has been blurred.
- calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
-
This function produces the EdgeLap of input image.
- calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
-
This function produces the EdgeLap of input image.
- calcStoreInDest2D(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
-
This function produces the EdgeNMSup of input image.
- calcStoreInDest2DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
This function calculates the autocorrelation coefficients and places them in the destination image for color images.
- calcStoreInDest2DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
This function calculates the autocovariance coefficients and places them in the destination images for color images.
- calcStoreInDest2DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest2DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDual
-
Stores the thresholded image into the destination image.
- calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmThresholdDualRGB
-
Stores the thresholded image into the destination image.
- calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitude
-
This function produces the gradient magnitude of input image.
- calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmChangeType
-
This function produces a new image with the new data type and new data range.
- calcStoreInDest34D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmNoise
-
This function produces a new 3D or 4D image that is the sum of the source image and noise.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHE
-
This function produces a new volume image that has been histogram equalized.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAHElocal
-
This function produces a new volume image that has been histogram equalized.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmLapMedianess
-
This function produces the Laplacian of input image.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmAnisotropicDiffusion
-
Calculates the diffused image and stores the resultant diffused image in the destination image model.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Produces a new image that has been blurred.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLaplacian
-
This function produces the Laplacian of input image.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMean
-
This function produces a new volume image that has been mean filtered.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
This function produces a new volume image that has been median filtered.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMorphologicalFilter
-
This function produces the Morphological Filter of input image.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmNMSuppression
-
This function produces the Non-maximum suppression of input image.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmUnsharpMask
-
this function produces the UnsharpMask of input image.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
This function produces a new image that has been cropped.
- calcStoreInDest3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
-
This function produces the Laplacian of input image.
- calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
-
This function produces the EdgeLap of input image.
- calcStoreInDest3D(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeNMSuppression
-
This function produces the Non-maximum suppression of input image.
- calcStoreInDest3DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
This function calculates the autocorrelation coefficients and places them in the destination image for color images.
- calcStoreInDest3DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
This function calculates the autocovariance coefficients and places them in the destination images for color images.
- calcStoreInDest3DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest3DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
This function calculates the autocorrelation coefficients and places them in the destination image for black and white images.
- calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
This function calculates the autocovariance coefficients and places them in the destination image for black and white images.
- calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGaussianBlur
-
Produces a new image that has been blurred.
- calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
This function produces a new image that has been cropped.
- calcStoreInDest4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest4DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCorrelation
-
This function calculates the autocorrelation coefficients and places them in the destination image for color images.
- calcStoreInDest4DC() - Method in class gov.nih.mipav.model.algorithms.AlgorithmAutoCovariance
-
This function calculates the autocovariance coefficients and places them in the destination images for color images.
- calcStoreInDest4DComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDest4DRGB() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMask
-
Fills new image/VOI with new fill value;
- calcStoreInDestBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
This method produces a new image that has been mode filtered and places filtered image in the destination image.
- calcStoreInDestBorder2D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
This function produces a new image that has been mode filtered and places filtered image in the destination image.
- calcStoreInDestBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMedian
-
Median filters the source image and replaces the source image with the mode filtered image.
- calcStoreInDestBorder3D() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmMode
-
Mode filters the 3D source image and makes a new image for the mode filtered image.
- calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHistogram2Dim
-
This function produces a 2D histogram image with first color values represented across the x axis and second color values represented across the y axis.
- calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.AlgorithmSubtractVOI
-
Generates the new data and places in a new (destination) image.
- calcStoreInDestColor() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
- calcStoreInDestComplex() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageMath
-
Generates the new data and places in a new (destination) image.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFIREEdgeExtraction
-
Edge extraction by FIRE operators of the source image.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzMinDeAndChatterji
-
Fuzzy minimization filtering of the source image.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFuzzyMinimization
-
Fuzzy minimization filtering of the source image.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmRuleBasedContrastEnhancement
-
Rule based contrast enhancement of the source image.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins
-
Adds image margins and stores result in srcImage Must use getSrcImage after running this routine.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat
-
Concatenate the image Must run getImageR after running this routine.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexToReal
-
Calculates the gray scale image.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmReplaceValue
-
Replace the values in place.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBConcat
-
Concatenate the image Must run getImageR after running this routine.
- calcStoreInPlace() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmRGBtoGray
-
Calculates the gray scale image.
- calcStoreInPlace2D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
This function crops srcImage Must use getSrcImage after running.
- calcStoreInPlace3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
This function crops srcImage Must use getSrcImage after running.
- calcStoreInPlace4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmCrop
-
This function crops srcImage Must use getSrcImage after running.
- calcTCoordX(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Calculate the X Texture Coordinates from world coordinates.
- calcTCoordY(float) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidget
-
Calculate the Y Texture Coordinates from world coordinates.
- calcTensor - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
- calcTensor(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIEstimateTensor
- calcThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram
-
Calculates the thresholded image based on the parameters of the threshold transfer function.
- calcThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calculates the thresholded image based on the parameters of the threshold transfer function.
- calcThresholdVolume - Variable in class gov.nih.mipav.view.ViewJFrameHistoLUT
-
Deprecated.DOCUMENT ME!
- calcThresholdVolume - Variable in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.DOCUMENT ME!
- calcThresholdVolume(float, float) - Method in class gov.nih.mipav.view.ViewJFrameHistoRGB
-
Deprecated.DOCUMENT ME!
- calcTotalVolume(SurfaceAttributes, TreatmentInformation) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Calculate the burning points total volume.
- calcTracts(VOIBaseVector[], int, int, int, int, int, int, int, ModelImage, ViewJProgressBar) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel
- calcTriSurface() - Method in class gov.nih.mipav.model.algorithms.AlgorithmHeightFunction
-
Calculates triangulated surface.
- calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
-
DOCUMENT ME!
- calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
-
DOCUMENT ME!
- calculate() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
DOCUMENT ME!
- calculate(libdt.CovMatrix, libdt.Mat, boolean) - Method in class gov.nih.mipav.model.algorithms.libdt
- calculate_maximum_sample_value(int) - Method in class gov.nih.mipav.model.file.charls
- calculate_minimum_stride() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- calculate_minimum_stride(int) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_encoder
- calculate_rho() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver_NU
- calculate_rho() - Method in class gov.nih.mipav.model.algorithms.LIBSVM.Solver
- calculate_rho() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver_NU
- calculate_rho() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.libsvm.Solver
- calculate_solid_angle(double[], int, double[], int, double[], int) - Static method in class gov.nih.mipav.model.structures.Voro
- calculate_solid_angle(Vector<Double>, int, Vector<Double>, int, Vector<Double>, int) - Static method in class gov.nih.mipav.model.structures.Voro
- calculate2PResiduals(double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateB0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
- calculateBestToWorst(double[], int[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateBin(double) - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
- calculateBin(double, double, double) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
- calculateBoundingBox() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraSubjectTargetPairs
- calculateBoundingBox(ModelImage, ModelImage) - Static method in class gov.nih.mipav.model.algorithms.registration.vabra.RegistrationUtilities
- calculateCenterOfMass2D(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage
-
Calculates the center of mass (gravity) of a 2D image using the intensity of each pixel as a weighting value.
- calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR25D
-
Calculates the center of mass (gravity) of a 2D image.
- calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR2D
-
Calculates the center of mass (gravity) of a 2D image.
- calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR25D2
-
Calculates the center of mass (gravity) of a 2D image.
- calculateCenterOfMass2D(ModelSimpleImage, ModelSimpleImage, boolean) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR2D
-
Calculates the center of mass (gravity) of a 2D image.
- calculateCenterOfMass3D(boolean) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage
-
Calculates the center of mass (gravity) of a 3D image.
- calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Calculates the center of mass (gravity) of a 3D image.
- calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Calculates the center of mass (gravity) of a 3D image.
- calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR35D
-
Calculates the center of mass (gravity) of a 3D image.
- calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegELSUNCOAR3D
-
Calculates the center of mass (gravity) of a 3D image.
- calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR35D
-
Calculates the center of mass (gravity) of a 3D image.
- calculateCenterOfMass3D(ModelSimpleImage, ModelSimpleImage, boolean) - Static method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegOAR3D
-
Calculates the center of mass (gravity) of a 3D image.
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitExponential
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLine
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
- calculateChiSq() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction
-
Calculates chi squared
- CalculateCircleCenter(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._Geometry
- CalculateCircleCenter(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._Geometry
- calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
- calculateCoherenceEnhancingDiffusion() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
From the cropped images, apply Coherence Enhanced Diffusion filter to each 2D slices.
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
-
Calculate the CED image.
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
Apply the coherence enhancing diffusion filter to the croppred MR image.
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
Apply the coherence enhancing diffusion filter to the croppred MR image.
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
- calculateCoherenceEnhancingDiffusion(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- calculateConformal() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.MjCorticalAnalysis
-
Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
- calculateConformal() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.CorticalAnalysisRender
-
Called on setup, when a new triangle mesh is loaded, or when the puncture triangle is selected and the "recalculate conformal" button is pressed by the user:
- calculateConvergenceMeasurement(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmN4MRIBiasFieldCorrectionFilter
- calculateCostButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
- calculateCostButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
- calculateCostFunctionValues() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
- calculateCostFunctionValues() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
- calculateCustomDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph
- calculateCustomRange() - Method in class gov.nih.mipav.view.ViewJComponentGraph
-
Calculates the range and domain (according to min and max y values). and expands range if necessary.
- calculateDefaultRangeDomain() - Method in class gov.nih.mipav.view.ViewJComponentGraph
-
Calculates the default range and domain (according to min and max x and y values).
- calculateDerivativeImage(float[], int[], boolean, float[][], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
- calculateDistance() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
- CalculateDMax(ComputationalGeometry.AABB2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.Normalizer2
- CalculateDMax(ComputationalGeometry.AABB3) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.Normalizer3
- calculateDTI(int, int, float[], float[][][], Matrix, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
- calculateDTIVoxel(float[], float[][], float[][][], int, int, int, Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
- calculateDTIVoxel2(float[], float[][], float[][][], int, int, int, Matrix, int) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitExponential
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitGaussian
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLaplace
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLine
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitLorentz
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitMultiExponential
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.FitRayleigh
- calculateFittedY() - Method in class gov.nih.mipav.model.algorithms.NLFittedFunction
-
Calculates yDataFitted
- calculateFreeRangeThreshold(int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- calculateFuzzyCMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
- calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateGabor() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Generate Gabor filter.
- calculateGaborFilter() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
- calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateGaussian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
generate the gaussian filter.
- calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
- calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateGM() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
generate the gradient magnitude image.
- calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHaralickTexture
-
DOCUMENT ME!
- calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
DOCUMENT ME!
- calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateHaralick() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Genernate Haralick images.
- calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Generate hurst index image.
- calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateIHN3Correction() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
- calculateImageSize(int[]) - Static method in class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Calculate the size of the image.
- calculateIntercept(double, double, double) - Static method in class gov.nih.mipav.model.file.FileInfoMinc
-
Calculates rescale intercept given a min and a slope value.
- CalculateInteriorAngle(ComputationalGeometry.LinkedVertex) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._EarClipping
- CalculateInteriorAngle(ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2, ComputationalGeometry.MyVector2) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._EarClipping
- calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateInvert() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Generate the invert image.
- calculateLaws() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmLawsTexture
-
DOCUMENT ME!
- calculateM0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- calculateM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
- calculateM0 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
- calculateMatrix(Matrix) - Method in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDWI2DTI
- calculateMaxAndMinVals() - Method in class gov.nih.mipav.model.algorithms.registration.vabra.VabraVolumeCollection
- CalculateMaxXValue() - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.EarClippingPolygon
- calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateMean() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Generate mean image.
- calculateMedian() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Generate the median image.
- CalculateMergePositionANDqem(ComputationalGeometry.HalfEdge3, ComputationalGeometry.Matrix4x4, ComputationalGeometry.Matrix4x4) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.QEM_Edge
- calculateMinMaxValues(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.J3D.volumeview.Sculptor
-
Called by the TextureSculptor or VolumeSculptor objects.
- calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateMode() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
- calculateNewOrigin(ModelImage, int[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmAddMargins
-
Calculates the origin values for the modified image, based on the current origin values and the added margins.
- calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
Calculate number of features being saved.
- calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
- calculateNumberFeatures() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
- calculateOutput() - Method in class gov.nih.mipav.model.algorithms.Backpropagation.Neuron
- calculatePixelHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
-
DOCUMENT ME!
- calculatePrincipleAxis(ModelImage, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBase
-
Working ...
- calculateProgressRatios(int, boolean, boolean) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
Calculates the progress ratios for different algorithms.
- calculateProgressValueBoundary(int, float[], int, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmBrainSurfaceExtractor
-
Calculates the boundary of progress value which is assigned to the
indexth algorithm. - CalculateQEM(ComputationalGeometry.MyVector3, ComputationalGeometry.Matrix4x4, ComputationalGeometry.Matrix4x4) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.QEM_Edge
- CalculateQMatrix(HashSet<ComputationalGeometry.HalfEdge3>, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.MeshSimplification_QEM
- calculateRadii() - Method in class gov.nih.mipav.view.ColorWheel
-
calculates radii of the interior circles using Lambertian equal areas equation used: r = 2 |sin(theta/2)|
- calculateREG(byte[][]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateRegIsotropicDiffusion() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
- calculateRelativeTime(double) - Method in class gov.nih.mipav.model.file.FileZVI
- calculateRescaleIntercept(double[], double[]) - Method in class gov.nih.mipav.model.file.FileInfoMinc
-
In MINC images, "real" values for pixels are calculated by taking the given image min and image max and rescaling the data accordingly.
- calculateRescaleIntercept(double[], double[], double[], double[], double[], boolean) - Static method in class gov.nih.mipav.model.file.FileInfoMincHDF
-
In MINC images, "real" values for pixels are calculated by taking the given image min and image max and rescaling the data accordingly.
- calculateResiduals() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegLeastSquares
-
CalculateResiduals.
- calculateResiduals() - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmRegValidation
-
CalculateResiduals.
- calculateResiduals() - Method in class gov.nih.mipav.view.ViewJFrameRegistration
-
Calculates the residuals of the least squares fit.
- calculateResiduals() - Method in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
Calculates the residuals of the least squares fit.
- calculateResiduals(double[], double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateSliceHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
- calculateSliceTamuraTexture() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmTamuraTexture
- calculateSlope(double, double, double, double) - Static method in class gov.nih.mipav.model.file.FileInfoMinc
-
Calculates rescale slope given a min and a max value.
- CalculateT(int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
- calculateT1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- calculateT1 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
-
The list of possible maps that can be calculated
- CalculateT1(ModelImage, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1
- calculateT1UsingConventionalTreT1() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- CalculateT1UsingConventionalTreT1Inner(ModelImage, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculateT1UsingConventionalTreT1Inner
- calculateT1UsingTreT1HIFI() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT1
- calculateT2 - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
- calculateT2with0Phase() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateT2with180Phase() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateT2withApproximateModeling() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateT2withFullModeling() - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateTagOffset(int, int) - Method in class gov.nih.mipav.model.file.MetadataExtractor.TiffReader
-
Determine the offset of a given tag within the specified IFD.
- calculateThreshold() - Method in class gov.nih.mipav.view.JPanelHistogram
-
Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
- calculateThreshold() - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
- calculateThreshold(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
- calculateThreshold(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
- calculateThreshold(int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmColocalizationRegression
-
DOCUMENT ME!
- calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
-
Extract the theshold from grount truth label.
- calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
- calculateThreshold(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- calculateThreshold(ModelImage, int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTProcess.CalculateT
-
Performs smart thresholding for the given image at at certain slice k
- calculateThresholdArea(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
- calculateThresholdArea(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
- calculateThresholdVolume(float, float) - Method in class gov.nih.mipav.view.JPanelHistogram
-
Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
- calculateThresholdVolume(float, float) - Method in class gov.nih.mipav.view.ViewJPanelLUT
-
Deprecated.Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
- calculateTimeInSeconds() - Method in class gov.nih.mipav.model.file.MetadataExtractor.AppleRunTimeMakernoteDescriptor
- calculateTimeStampString(long) - Method in class gov.nih.mipav.model.file.FileZVI
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
- calculateTransform(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- calculateTransform(ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
- calculateTransform(ModelImage, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- calculateTransform(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- calculateTransform(ModelImage, ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
- calculateTransform_dim_fixed(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- calculateTransform_dim_fixed(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- calculateTransform_resol_fix(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
- calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
- calculateTransform_resol_fix_2D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
- calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
- calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
- calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
- calculateTransform_resol_fix_3D(ModelImage, float) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
- CalculateTriangleArea(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._Geometry
- CalculateTriangleCenter(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._Geometry
- CalculateTriangleNormal(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, boolean) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._Geometry
- calculateTwoPResiduals(double[], double, double, double, double[], double[], double[], double[], int) - Method in class gov.nih.mipav.model.algorithms.AlgorithmTreT2
- calculateValidEndZIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
- calculateValidStartZIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmGradientMagnitudeSep
- calculateVOIHurstIndex() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmHurstIndex
- calculateVOIsVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
Compute the VOIs binary mask based volumes.
- calculateVOIsVolume() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3DFast
-
Compute the VOIs binary mask based volumes.
- calculateVTDateTimeString(double) - Method in class gov.nih.mipav.model.file.FileZVI
- calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateBoundaryFeature2D
- calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures2D
- calculateWavelet() - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeaturesSaveAutoTrain
-
Generate the wavelet image
- calculator - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
DOCUMENT ME!
- CalculteT1UsingTreT1HIFIInner(ModelImage, int, int, int, int) - Constructor for class gov.nih.mipav.model.algorithms.AlgorithmTreT1.CalculteT1UsingTreT1HIFIInner
- calcVolume(ModelImage, ModelTriangleMesh[]) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
- calcVolume(SurfaceAttributes, TreatmentInformation) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBase
-
Calculate the current burning point volume.
- calcVolumeMask(BitSet, ModelImage, Vector3f[], int, int, int, int, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeSurface
- calcVoxels() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnBaseView
-
Identify all voxels that are inside or on the mesh that represents the brain surface.
- calcWindowSliderMax(ModelImage) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
- calcWinLevTransferFunction(ModelImage, float, float, float[], float[]) - Static method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
Calculate the x and y components of the transfer function, given the active image and the desired window and level.
- calcXProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
-
Calculates the X Projection for color or black and white images.
- calcYProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
-
Calculates the Y Projection for color or black and white images.
- calcZeroX(double[]) - Method in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- calcZeroXMaskBitset(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacian
-
Calculates the zero crossing mask of a 2D image and returns it as a BitSet buffer.
- calcZeroXMaskBitset(float[], int[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmEdgeLaplacianSep
-
Calculates the zero crossing mask of a 2D image and returns it as a BitSet buffer.
- calcZProjection() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMaximumIntensityProjection
-
Calculates the Z Projection for color or black and white images.
- calFldStr - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
388 Calibrated Field Strength (x10 uGauss).
- cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
-
DOCUMENT ME!
- cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle
-
DOCUMENT ME!
- cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle
-
DOCUMENT ME!
- cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT1
- cAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2
- CALIBRATED_RGB - Static variable in class gov.nih.mipav.model.file.FileBMP
- CalibrationDateDD - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CalibrationDateMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CalibrationDateYYYY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CalibrationTimeHH - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CalibrationTimeMM - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CalibrationTimeSS - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- call(Vertex, Point3, float[], Point3) - Static method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.PointDistanceFunctor
- call_and_compare_log2_ceil(int) - Method in class gov.nih.mipav.model.file.charls
- call_and_compare_log2_floor(int) - Method in class gov.nih.mipav.model.file.charls
- call_application_data_callback(byte) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- call_decode_advanced() - Method in class gov.nih.mipav.model.file.charls
- call_decode_simple_8_bit_monochrome() - Method in class gov.nih.mipav.model.file.charls
- call_encode_advanced_8_bit_monochrome() - Method in class gov.nih.mipav.model.file.charls
- call_encode_simple_8_bit_monochrome() - Method in class gov.nih.mipav.model.file.charls
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialog3DMosaicTo4DSlices
-
Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialog4DImageCalculator
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAdaptiveKuwaharaFilter
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAddMargins
-
Once all the necessary variables are set, call the Image Margins algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAGCIE
-
Once all the necessary variables are set, call the AGCIE algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAHE
-
Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAHElocal
-
Once all the necessary variables are set, call the local AHE algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAINDANE
-
Once all the necessary variables are set, call the AINDANE algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnisotropicDiffusion
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAntigradient2
-
Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAnyTwoImagesSNR
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCorrelation
-
Calls the algorithm with the set variables.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoCovariance
-
Calls the algorithm with the set variables.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogAutoSeedWatershed
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBarrelDistortion
-
Once all the necessary variables are set, call the Barrel/Pincushion Distortion Correction algorithm based on what type of image this is
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBGAndFGDistanceMap
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBGDistanceMap
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBilateralFilter
-
Once all the necessary variables are set, call the Bilateral Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBM3D
-
Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBorderClearing
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBottomHat
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBoundaryAttenuation
-
Construct and run the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBoxCount
-
Calls the algorithm with the set variables.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBrainSurfaceExtractor
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBRISK
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogBulkImageCalculator
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMass
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCenterOfMassRGB
-
Once all the necessary variables are set, call the threshold rgb algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleGeneration
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircleToRectangle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCircularSectorToRectangle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogClose
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion
-
Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationEM
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColorEdge
-
Once all the necessary variables are set, call the local normalization algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogColorSaturation
-
Once all the necessary variables are set, call the Color Saturation Adjustment algorithm based on what type of image this is
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcat
-
Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult2Dto3D
-
calls algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto3D
-
calls algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConcatMult3Dto4D
-
calls algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogContrastEnhancementUsingExposureFusion
-
Once all the necessary variables are set, call the contrast enhancement using exposure fusion algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvergenceField
-
Once all the necessary variables are set, call the convergence field algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert3Dto4D
-
Runs the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4Dto3D
-
Runs the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoMultiple3D
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
Call Algorithm.....calls the RGBConcat algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogConvertType
-
Once all the necessary variables are set, call the Change Type algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCorrectSpacing
-
Call algorithm to copy appropriate images from original, and double where necessary.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCrop
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropBoundaryParam
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropPointParam
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedCuboid
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCropTiltedRectangle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCumulativeHistogram
-
Calls the CumulativeHistogram Algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogCyclicPermutation
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
-
Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDeconvolution
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDeleteObjects
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDemonsLite
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDEMRI3
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagMultiEditor
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDICOMtoAVI
-
Method for calling the Dicom to AVI algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDilate
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDirectResample
-
Resample images to power of 2.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDistanceMap
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDoublyConnectedSC
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDSC_MRI_toolbox
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDTICreateListFile
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogDualContourSearch
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeDetection3D
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeLaplacian
-
Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgeNMSuppression
-
Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEdgePreservingSmoothing
-
Once all the necessary variables are set, call the Edge Preserving Smoothing algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEditCircleDiameter
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEditSquareLength
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEfficientWatershed
-
Once all the necessary variables are set, call the Efficient Watershed algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseGeneration
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToCircle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEllipseToRectangle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
-
Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropicEdgeDetection
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEntropyMinimization
-
Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogErode
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateMaskSegmentation
-
Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogEvaluateSegmentation
-
Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractBrain
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlices
-
Run the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogExtractSurfaceCubes
-
Once all the necessary variables are set, call the Extract Surface algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymize
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFaceAnonymizerBET
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFacetModel
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFastMarching
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT
-
Once all the necessary variables are set, call the FFT algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFillObjects
-
When OK button is clicked, this method is invoked.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFindEdges
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFIREEdgeExtraction
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFlip
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrameLinker
-
Not used.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRAP
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRET
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
Once all the necessary variables are set, call AlgorithmFRETBleedThrough.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
Once all the necessary variables are set, call AlgorithmFRETEfficiency.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzMinDeAndChatterji
-
Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans
-
Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyConnectednessSegmentation
-
Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFuzzyMinimization
-
Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaussianBlur
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateGrid
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGenerateIsolines
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientInverseWeightedSmoothing
-
Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGradientMagnitude
-
Once all the necessary variables are set, call the Gradient Magnitude algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGraphBasedSegmentation
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGuidedFilter
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHaarTransform
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHaralickTexture
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisCornerDetector
-
Once all the necessary variables are set, call the Harris corner detector algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHarrisLaplace
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHessian
-
Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHillClimbingWatershed
-
Once all the necessary variables are set, call the HillClimbing Watershed algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogram2Dim
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramMatch
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSliceMatch
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHistogramSummary
-
Once all the necessary variables are set, call the Histogram algorithm based on whehter the image is color or not.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHMRF_EM
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHomomorphicFilter
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCardioid
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughCircle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughEllipse
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughHyperbola
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughLine
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHoughParabola
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogHurstIndex
-
Once all the necessary variables are set, call the Hurst Index algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIAGCWD
-
Once all the necessary variables are set, call the IAGCWD contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIDObjects
-
Once all the necessary variables are set, call the IDObjects algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIHN3Correction
-
Once all the necessary variables are set, call the IHN3 Correction algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImageCalculator
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImageMath
-
Once all the necessary variables are set, call the Image Math algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogImRegPOC
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
-
Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
Once all the necessary variables are set, call the Insert Slice algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertSlice
-
Once all the necessary variables are set, call the Insert Slice algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInsertVolume
-
Once all the necessary variables are set, call the Insert Volume algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogInvert
-
Once all the necessary variables are set, call the Change Type algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogIsophoteCurvature
-
Once all the necessary variables are set, call the Isophote Curvature algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogKernelRegression
-
Once all the necessary variables are set, call the Kernel Regression algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogKMeans
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLaplacian
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLargestCircle
-
Once all the necessary variables are set, call the Largest circle algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLawsTexture
-
Once all the necessary variables are set, call the Laws feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLightboxGen
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLLE
-
Once all the necessary variables are set, call the locally linear embedding algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLoadImage
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
Once all the necessary variables are set, call the local normalization algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalVariance
-
Once all the necessary variables are set, call the local variance algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLogSlopeMapping
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLowerCompletion
-
Once all the necessary variables are set, call the Lower Completion algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogLuminanceAdaptation
-
Once all the necessary variables are set, call the LuminanceAdaptation algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSegment
-
Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMarkovSmooth
-
Once all the necessary variables are set, call the Markov Smooth algorithm based on whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMask
-
Once all the necessary variables are set, call the Mask algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMatchImages
-
Once all the necessary variables are set, call the Match Images algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMaximumLikelihoodIteratedBlindDeconvolution
-
Once all the necessary variables are set, call the algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMean
-
Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftClustering
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMeanShiftSegmentation
-
Once all the necessary variables are set, call the Mean Shift Segmentation algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMedian
-
Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMidsagittal
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMode
-
Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalFilter
-
Once all the necessary variables are set, call the Sizeian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalGradient
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalLaplacian
-
Once all the necessary variables are set, call the gray scale morphology algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMosaicToSlices
-
Once all the necessary variables are set, call the Concat algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMotionDetection
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMRIShadingCorrection
-
Once all the necessary variables are set, call the Entropy Minimization algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMSER
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionBilateralFilter
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiResolutionGuidedFilter
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogMultiScaleHornSchunk
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogN4MRIBiasFieldCorrection
-
Once all the necessary variables are set, call the N4 MRI Bias Field Correction algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNearlyCircleToCircle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNLMeans_filt2D
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNLNoiseReduction
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNMSuppression
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNoise
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNoiseLevel
-
Once all the necessary variables are set, call the NLAlgo
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogNonlocalMeansFilter
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogOpen
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPadImages
-
Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogParticleAnalysisNew
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPhaseCongruency
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPhasePreservingDenoising
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPointArea
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToCircle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPolygonToRectangle
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPowerWatershed
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
-
run.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogPyWavelets
-
Once all the necessary variables are set, call the Barrel/Pincushion Distortion Correction algorithm based on what type of image this is
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantify
-
Once all the necessary variables are set, call the quantify mask algorithm using the previously set file name.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogQuantifyMask
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRandomizeSliceOrder
-
Locks the images, then runs the inverse slice order algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionMergingViaBoundaryMelting
-
Once all the necessary variables are set, call the region merging via boundary melting
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegionsFromPartialBorders
-
Once all the necessary variables are set, call the regions from partial borders
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationBSpline
-
Runs the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer
-
Calls the algorithm, assuming the variables are already set up.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares
-
Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR25D
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR2D
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR35D
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationOAR3D
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationSIFT3D
-
Sets arrays appropriately and calls registration algorithm, running it in it's own thread.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationTPSpline
-
Runs the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegPatientPos
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion
-
Once all the necessary variables are set, call the mean algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceBlankSlicesWithAverages
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceSlice
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReplaceValue
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogReslice
-
Calls the algorithm using the mode.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
Once all the necessary variables are set, call the RGBConcat algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGray
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoGrays
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRGBtoHSB
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRotate
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogRuleBasedContrastEnhancement
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScaleSaliency
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSCDSegmentation
-
Once all the necessary variables are set, call the Bilateral Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableBase
-
Starts the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
Calls the algorithm with the set variables.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSequentialScanningWatershed
-
Once all the necessary variables are set, call the SequentialScanning Watershed algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogShortestPathWatershed
-
Once all the necessary variables are set, call the ShortestPath Watershed algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
Calls the algorithm with the set-up parameters.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFT
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSIFTImageSimilarity
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSimulatedExposureFusion
-
Once all the necessary variables are set, call the simulated exposure fusion contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleMRIImageSNR
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSingleScaleHornSchunk
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSkeletonize
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSlantTransform
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSliceAveraging
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSM2
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSobel
-
Once all the necessary variables are set, call the median algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSpatialBroxOpticalFlow
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSphereGeneration
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSplitAndMergeWatershed
-
Once all the necessary variables are set, call the Split And Merge Watershed algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogStandardDeviationThreshold
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubsample
-
Method for calling the Subsample algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubset
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSubtractVOI
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwap34
-
Runs the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapDims
-
Runs the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes
-
Once all the necessary variables are set, call the Swap Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSWI
-
Once all the necessary variables are set, call the kidney segmentation algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogSymmetricNearestNeighbor
-
Once all the necessary variables are set, call the Symmetric Nearest Neighbor algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTamuraTexture
-
Once all the necessary variables are set, call the Tamura Texture algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTemporalBroxOpticalFlow
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureAnalysis
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTextureSegmentation
-
Once all the necessary variables are set, call the texture segmentation algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThinning2D
-
Once all the necessary variables are set, call the rule based contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThreshold
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogThresholdRGB
-
Once all the necessary variables are set, call the threshold rgb algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTiltCorrection
-
Once all the necessary variables are set, call the tilt correction algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTimeFitting
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTopHat
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformBSpline
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT1
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTreT2
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTrilateralFilter
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTVL1FLOW
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogTwoMRIImagesSNR
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUltErode
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindComponentLabelling
-
Once all the necessary variables are set, call the Union Find Component Labelling algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnionFindWatershed
-
Once all the necessary variables are set, call the UnionFind Watershed algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogUnsharpMask
-
Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVABRA
-
Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVesselEnhancement
-
Once all the necessary variables are set, call the simulated exposure fusion contrast enhancement algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIBoolean
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIExtraction
-
Calls the algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIHausdorffDistance
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOILogicalOperations
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIShapeInterpolation
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Once all the necessary variables are set, call the VOI Props algorithm to run the statistic calculation.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWalshHadamardTransform
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWatershed
-
DOCUMENT ME!
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletFuse
-
Once all the necessary variables are set, call the Nonlocal Means filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletMultiscaleProducts
-
Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogWaveletThreshold
-
Once all the necessary variables are set, call the UnsharpMark algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
call algorithm
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFiles
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateHEDpngFilesTest
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogCreateProbMap
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_3DReconstrucion
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesLearnFromFailure64TestCase
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKneesMapFromMRIandCED
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogLearnFromFailure64Knees
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_CED_map_pre
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSK10_MRI_map_nopre
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_2D_axial_no_pre
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_no_pre
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCopyFiles
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMap64
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogCreateProbMapConvert
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogGenerateEndingSlices
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED_map
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_mhg_to_nii
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertMask
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTest
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12ConvertRestoOnePointFiveTrain
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTest
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12CropAndNormalizeTrain
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnns
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12Train3DCnnsSmall
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmap
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapCg
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_ced_scale
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI_conversion
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapMICCAI
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DHEDmapSPIE_2017
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasConverter
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasCopyGTstl
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurface
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMap
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEdgeMapGT
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceEnergyMap
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTest
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter3DSurfaceTrainAndTest
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesReconstrucion
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate3DReconstruction
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateBoundaryFeatureTrain
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateCheckPngFile
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateExtractCEFeature
-
Driver to do automatic feature extraction.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesClassification
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateFeaturesTrain
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceCompare
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceConvertNII
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateISBIfinalSurfaceEvalSeg
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_HEDmap
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateJMI_2017_VOI_converter
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TestCase
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateLearnFromFailure64TrainingCase
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveBoundaryFeature2D
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures2D
-
Once all the necessary variables are set, call the Gaussian Haralick feature algorithm.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_mri_ced
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
-
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
- callAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogRegistrationValidation
-
Method for calling various cost algorithms, should only be called after registered image is created.
- callAlgorithm(int) - Method in class gov.nih.mipav.view.dialogs.JDialogShowCosts
-
DOCUMENT ME!
- callAlgorithm(ModelImage, int, int, int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSegmentationRegBSpline3D
-
Single thread based segmentation, which takes up to 40 minutes.
- callAlgorithm2() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT
-
Once all the necessary variables are set, call the FFT algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithmFrequencyFilter() - Method in class gov.nih.mipav.view.dialogs.JDialogFFT
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callAlgorithmNonInteractive(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogMask
-
method is meant to be used when the algorithm needs to be performed non-interactively, hence the hardcoding of the variables.
- callAlgorithmRun() - Method in class gov.nih.mipav.view.dialogs.JDialogReorient
-
For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees).
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseRotateExt
-
Mouse behavior callback reference.
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseOrbit
-
DOCUMENT ME!
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseRotate
-
DOCUMENT ME!
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseSelection
-
DOCUMENT ME!
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslate
-
DOCUMENT ME!
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseTranslation
-
DOCUMENT ME!
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoom
-
DOCUMENT ME!
- callback - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.mouse.MouseZoomBehavior
-
DOCUMENT ME!
- callback_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientCheckingCostFunction
- callback_failed - Enum constant in enum gov.nih.mipav.model.file.charls.jpegls_errc
- CallbackReturnType() - Constructor for enum gov.nih.mipav.model.algorithms.CeresSolver.CallbackReturnType
- callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.GradientProblemSolverOptions
- callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.MinimizerOptions
- callbacks - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
- callColorAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callColorAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogGaborFilter
-
Once all the necessary variables are set, call the Frequency Filter algorithm based on what type of image this is and whether or not there is a separate destination image.
- callDialog(int[], int, FileWriteOptions) - Method in class gov.nih.mipav.model.file.FileIO
-
Calls GUI dialogs based on what type of image this is and the number of dimensions.
- calledAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ
-
The called application entity name, must be 16 or less characters.
- callExtractAlgorithm() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
call the ExractSlices algorithm, building the dest image based on the type of the src image.
- callFrameDeleteAllButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Buttons for dealing with frame deletion.
- callFrameDeleteButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Buttons for dealing with frame deletion.
- callFrameToFrontButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Button for bringing frame to front
- callGCbutton - Variable in class gov.nih.mipav.view.ViewJFrameMemory
-
DOCUMENT ME!
- callGCButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Button for dealing with garbage collection
- callImageDeleteAllButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Buttons for dealing with image deletions
- callImageDeleteButton - Variable in class gov.nih.mipav.view.ViewJFrameRegisteredImages
-
Buttons for dealing with image deletions
- callingAppTitle - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_AAssociateRQ
-
The calling application entity name, must be 16 or less characters.
- callReg35Algorithm(ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
-
Calls the algorithm with the set-up parameters.
- callRemoveAlgorithm() - Method in class gov.nih.mipav.view.ViewJFrameLightBox
-
call the RemoveSlices algorithm, building the dest image based on the type of the src image.
- calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics
- calls - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.RememberingCallback
- calls_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest.BadLocalParameterization
- CallStatistics() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CallStatistics
- callT2Algorithm(ModelImage, ModelImage) - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIPreprocessing
-
Calls the algorithm with the set-up parameters.
- callTalAlgorithm() - Method in class gov.nih.mipav.view.dialogs.JDialogScriptableTransform
-
DOCUMENT ME!
- callVOIAlgo(ViewVOIVector, int, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats
- calPtArr() - Method in class gov.nih.mipav.model.file.rawjp2.RAWJP2Header
- camera - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
- camera - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- camera - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
- Camera - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- cameraAdapterMagnification - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraBinning - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraBitDepth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFrameHeight - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFrameImageOrientation - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFramePixelDistance - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFrameScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFrameStartLeft - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFrameStartTop - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraFrameWidth - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraImageAcquisitionTime - Variable in class gov.nih.mipav.model.file.FileZVI
- cameraImageAcquisitionTime0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraImageAcquisitionTime1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraImageAcquisitionTime2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraImageAcquisitionTime3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraLiveScalingFactor - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- CameraLocation - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- cameraMake - Variable in class gov.nih.mipav.model.file.FileInfoBase
- cameraMakeBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- cameraMakeTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- cameraModel - Variable in class gov.nih.mipav.model.file.FileInfoBase
- cameraModelBlurry - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- cameraModelList - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- cameraModelTrue - Variable in class gov.nih.mipav.model.algorithms.BlindDeblur
- cameraNearPlane - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Slider for moving the camera near-plane in/out from the eye position.
- cameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJFramePlotterView
-
DOCUMENT ME!
- cameraPanel - Variable in class gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView
-
DOCUMENT ME!
- cameraPosition - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- cameraRotationDegreeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
-
camera rotation degree label
- cameraRotationDegreeLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
-
camera rotation degree label
- cameraRotationDegreeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelNavigation
-
camera rotation degree slider
- cameraRotationDegreeSlider - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelRenderMode_WM
-
camera rotation degree slider
- CameraSettings() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory.CameraSettings
- CameraSettings() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.OlympusMakernoteDirectory.CameraSettings
- cameraShadingCorrection - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraShutterLiveEnable - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- cameraViewRotationDegree - Variable in class gov.nih.mipav.view.renderer.WildMagic.Navigation.NavigationBehavior
- cameraXLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Camera move parameter labels
- cameraXTurnLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Camera turn parameter labels
- cameraYLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Camera move parameter labels
- cameraYTurnLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Camera turn parameter labels
- cameraZLabel - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelDisplay_WM
-
Camera move parameter labels
- cancel - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- cancel - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Buttons used for the host tab
- CANCEL - Enum constant in enum gov.nih.mipav.view.dialogs.ExitStatus
-
Cancel button pressed
- CANCEL - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmFaceAnonymizer
-
DOCUMENT ME!
- CANCEL - Static variable in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- cancelACPCButton - Variable in class gov.nih.mipav.view.dialogs.JDialogACPC
- cancelAction() - Method in class gov.nih.mipav.view.dialogs.JDialogDicom2XMLSelection
-
Calls the super.cancelAction.
- cancelAction() - Method in class gov.nih.mipav.view.dialogs.JDialogListSaveSelection
-
Calls
setVisible(false)to close the dialog. - CancelAction() - Constructor for class gov.nih.mipav.view.dialogs.JDialogBase.CancelAction
- cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameAnimate
-
Resets current slice's brightness and contrast to original.
- cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationEM
-
Resets current slice's brightness and contrast to original.
- cancelBrightness() - Method in class gov.nih.mipav.view.ViewJFrameColocalizationRegression
-
Resets current slice's brightness and contrast to original.
- cancelButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- cancelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBase
-
Cancel button is used on most dialogs.
- cancelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogGUIDClient
- cancelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog
-
DOCUMENT ME!
- cancelButton - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog
-
DOCUMENT ME!
- cancelButton - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Cancel button is used on most dialogs.
- cancelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.JPanelBrainSurfaceFlattener_WM
-
Cancel button is used on most dialogs.
- cancelButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase
-
Cancel button is used on most dialogs.
- cancelButton - Variable in class gov.nih.mipav.view.ViewJProgressBar
-
Cancel button, if applicable.
- cancelButton - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
- cancelCellEditing() - Method in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
- CancelColorListener() - Constructor for class gov.nih.mipav.view.ViewJPanelHistoLUT.CancelColorListener
- cancelFlag - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query
-
If true then the DICOM query is cancelled.
- cancelFlag - Variable in class gov.nih.mipav.view.dialogs.JDialogBase
-
Flag indicating if the dialog had been cancelled or not.
- cancelFlag - Variable in class gov.nih.mipav.view.renderer.JPanelRendererBase
-
Flag indicating if the dialog had been cancelled or not.
- cancelFlag - Variable in class gov.nih.mipav.view.ViewJProgressBarMulti
- cancelled - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
-
Flag to indicate if the receive process should be cancelled.
- CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnimate.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogAnnotation.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogGridOptions.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogLightBox.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.dialogs.JDialogVOIStats.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelClip.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.JPanelLights.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelDisplay.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSlices.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelSurfaceBox.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsRayCast.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.J3D.volumeview.JPanelRenderOptionsShearWarp.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.JPanelDTIParametersPanel.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase.CancelListener
- CancelListener() - Constructor for class gov.nih.mipav.view.ViewJFrameGraph.CancelListener
- cancelPendingMoves() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Cancels pending moves.
- cancelPendingQuery() - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Cancels pending query.
- cancelPressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse
-
DOCUMENT ME!
- cancelPressed - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse
-
DOCUMENT ME!
- cancelQ - Variable in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
DOCUMENT ME!
- cancelSorting() - Method in class gov.nih.mipav.model.structures.TableSorter
-
DOCUMENT ME!
- cancelTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTalairach
-
DOCUMENT ME!
- cancelTalairachButton - Variable in class gov.nih.mipav.view.dialogs.JDialogTLRC
- canCloseImageBAfterLoad() - Method in class gov.nih.mipav.view.ViewJFrameBase
-
Returns whether or not the close image B option should appear after loading.
- canContainMetadata - Variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
- canContainMetadataTypes - Static variable in enum gov.nih.mipav.model.file.MetadataExtractor.JpegSegmentType
- Candidate(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMInitializeStegmann.CAAMInitCandidates
- candidate_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
- candidate_cost_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionStepEvaluator
- candidate_x_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.TrustRegionMinimizer
- CanFormConvexHull_2d(ArrayList<ComputationalGeometry.MyVector2>) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._ConvexHull
- CanFormConvexHull_3d(ArrayList<ComputationalGeometry.MyVector3>) - Method in class gov.nih.mipav.model.structures.ComputationalGeometry._ConvexHull
- cang - Variable in class gov.nih.mipav.model.structures.Voro.wall_cone
- canImport(JComponent, DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView.ArrayListTransferHandler
-
DOCUMENT ME!
- canImport(JComponent, DataFlavor[]) - Method in class gov.nih.mipav.view.dialogs.JDialogSwapSlicesVolumes.TableTransferImporter
- canImport(TransferHandler.TransferSupport) - Method in class gov.nih.mipav.view.ViewUserInterface.ImageTransferHandler
- CANNY - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- CANNY - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- cannyAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogCannyEdgeDetection
-
DOCUMENT ME!
- CannyButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- CannyPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- CANONICAL_VIEWS - Enum constant in enum gov.nih.mipav.model.algorithms.CeresSolver.VisibilityClusteringType
- CanonicalViewsClustering() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClustering
- CanonicalViewsClusteringOptions() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2.CanonicalViewsClusteringOptions
- CanonicalViewsTestComputeCanonicalViewsTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- CanonicalViewsTestSimilarityPenaltyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- CanonicalViewsTestSizePenaltyTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- CanonicalViewsTestViewScoreTest() - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- CanonMakernoteDescriptor(MetadataExtractor.CanonMakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDescriptor
- CanonMakernoteDescriptorTest() - Constructor for class gov.nih.mipav.model.file.MetadataExtractorTest.CanonMakernoteDescriptorTest
- CanonMakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CanonMakernoteDirectory
- canProcessMouseClick - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
- canReadImages() - Method in interface gov.nih.mipav.plugins.PlugInFile
-
Returns whether this plugin supports reading of images in its format.
- canSetTypeAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight
-
Query if light can be set to the ambient type.
- canSetTypeDirectional() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight
-
Query if light can be set to the directional type.
- canSetTypeNonAmbient() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight
-
Query if light can be set to any non-ambient type.
- canSetTypePoint() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight
-
Query if light can be set to the point type.
- canSetTypeSpot() - Method in class gov.nih.mipav.view.renderer.J3D.GeneralLight
-
Query if light can be set to the spot type.
- canvas - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysPanning
- canvas - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CoordSysScrollZoom
- canvas - Variable in class gov.nih.mipav.model.file.jxlatte.JXLCodestreamDecoder
- canvas - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
The Canvas3D object on which the surfaces are drawn and where the picking happens.
- canvasBounds - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior
-
Canvas boundary.
- canvasBounds - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer
-
Canvas boundary.
- canvasCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehavior
-
Canvas center.
- canvasCenter - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.MouseBehaviorRenderer
-
Canvas center.
- canWeHandleTransferSyntax(DICOM_PDUItemType) - Method in class gov.nih.mipav.model.dicomcomm.DICOM_PDUService
-
Determines wheather or not this transfer syntax is support by MIPAV.
- canWriteImages() - Method in interface gov.nih.mipav.plugins.PlugInFile
-
Returns whether this plugin supports writing of images in its format.
- capacity - Variable in class gov.nih.mipav.model.structures.IntVector
-
The initial number of elements to have space for in the vector.
- capacity - Variable in class gov.nih.mipav.model.structures.TransferFunction
-
The total capacity of the 2D point array.
- caps - Static variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase
- capScreenHeight - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
-
DOCUMENT ME!
- capScreenWidth - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.flythruview.FlythruRender
-
DOCUMENT ME!
- captureComponent(Component) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
- captureComponent(Component) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer
- captureFrame - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
Camera snapshot frame.
- captureImage - Variable in class gov.nih.mipav.view.renderer.J3D.RenderViewBase
-
The resulting ModelImage of the camera snapshot.
- captureImage() - Method in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
- captureImage() - Method in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
- captureImageButton - Variable in class gov.nih.mipav.view.dialogs.DialogDTIColorDisplay
-
buttons *
- captureImageButton - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay
-
buttons *
- captureScreen() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.RecordMouse
-
Captures the canvas.
- captureScreen() - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.RecordMouse
-
Captures the canvas.
- captureTime - Variable in class gov.nih.mipav.model.file.FileAvi
- captureVersion - Variable in class gov.nih.mipav.model.file.FileICS
-
DOCUMENT ME!
- captureVersion - Variable in class gov.nih.mipav.model.file.FileInfoICS
-
DOCUMENT ME!
- Cardiac - Static variable in class gov.nih.mipav.model.structures.ModelLUT
- cardiacFrequency - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
- cardiacFrequency - Variable in class gov.nih.mipav.model.file.FilePARREC
- cardiacFrequencyIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
- cardiacFrequencyPos - Variable in class gov.nih.mipav.model.file.FilePARREC
- cardiacHeartRate - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- cardiacHeartRate - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FileInfoPARREC
- cardiacPhaseNumber - Variable in class gov.nih.mipav.model.file.FilePARREC
- cardiacPhaseNumberIndex - Variable in class gov.nih.mipav.model.file.FilePARREC
- cardiacPhaseNumberPos - Variable in class gov.nih.mipav.model.file.FilePARREC
- cardiacRepTime - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- cardiacRepTime - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- CARDIOLOGY - Static variable in class gov.nih.mipav.model.structures.VOI
-
Indicates that the VOI is of type CARDIOLOGY, special VOI for specific tasks needed in cardiology.
- caret - Variable in class gov.nih.mipav.model.file.FileInfoNIFTI
- caretArray - Variable in class gov.nih.mipav.model.file.FileNIFTI
- cArray - Variable in class gov.nih.mipav.model.file.FileZVI
- CArray - Variable in class gov.nih.mipav.model.algorithms.AlgorithmIHN3Correction
-
DOCUMENT ME!
- cart2bary(SIFT3D.Cvec, SIFT3D.Tri, SIFT3D.Cvec, double[]) - Method in class gov.nih.mipav.model.algorithms.SIFT3D
- CartesianToPolar2D(ModelImage, ModelSimpleImage, ModelSimpleImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems
-
Convert the Cartesian coordinate into the Polar coordinate.
- CartesianToPolar2D(Vector2f, Vector2f, ModelImage) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems
-
Convert the Cartesian coordinate into the Polar coordinate, point based.
- CartesianToPolar2D(Vector2f, Vector2f, Vector3f) - Static method in class gov.nih.mipav.util.MipavCoordinateSystems
-
Convert the Cartesian coordinate into the Polar coordinate, point based.
- cas - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_dwt_t
- cas - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_v4dwt_t
- case_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Forest
- case_weights - Variable in class gov.nih.mipav.model.algorithms.StochasticForests.Tree
- case_weights_file - Variable in class gov.nih.mipav.model.algorithms.StochasticForests
- CASE0 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE1 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE10 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE11 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE12 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE13 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE14 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE15 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE2 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE3 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE4 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE5 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE6 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE7 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE8 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CASE9 - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- CasioType1MakernoteDescriptor(MetadataExtractor.CasioType1MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDescriptor
- CasioType1MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType1MakernoteDirectory
- CasioType2MakernoteDescriptor(MetadataExtractor.CasioType2MakernoteDirectory) - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDescriptor
- CasioType2MakernoteDirectory() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.CasioType2MakernoteDirectory
- castToFloat(int) - Method in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- castToFloat0(int) - Method in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- castToFloatWithMax(int) - Method in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- castToInt(int) - Method in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- castToInt0(int) - Method in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- castToIntWithMax(int) - Method in class gov.nih.mipav.model.file.jxlatte.ImageBuffer
- cat2D_2D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
This function produces a new image that has been concatenated.
- cat2D_3D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
This function produces a new image that has been concatenated.
- cat3D_3D_3D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
This function produces a new image that has been concatenated.
- cat3D_3D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
This function produces a new image that has been concatenated.
- cat3D_4D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
cat.
- cat4D_4D_4D() - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmConcat
-
cat.
- categorizeByShape() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
Shape based similarity measure.
- categorizeByTexture() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateImageCategorize
-
Texture bases similarity measure.
- category - Variable in class gov.nih.mipav.model.file.FileICS
-
DOCUMENT ME!
- category - Variable in class gov.nih.mipav.model.file.FileMetaImage
- Category - Static variable in interface gov.nih.mipav.plugins.PlugIn
- CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInAlgorithm
- CATEGORY - Static variable in class gov.nih.mipav.plugins.PlugInBundle
- CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInFile
- CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInFileTransfer
- CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInGeneric
- CATEGORY - Static variable in interface gov.nih.mipav.plugins.PlugInView
- CATFileName - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat
-
DOCUMENT ME!
- CatmullRom(ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3, ComputationalGeometry.MyVector3) - Constructor for class gov.nih.mipav.model.structures.ComputationalGeometry.CatmullRom
- CATPH4(int, double[][], double[][], int, int, int, int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], double[], double, double[], double[], double[], double[], double, double[], double[][], double[], double[], double[][], double[][], double[][], boolean, int[]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- cauchy(int, double[], double[], double[], int[], double[], int[], int[], double[], double[], double[], int, double[][], double[][], double[][], double[][], double, int, int, double[], double[], double[], double[], int[], int, double, int[], double) - Method in class gov.nih.mipav.model.algorithms.L_BFGS_B
- CauchyLoss(double) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CauchyLoss
- CB(double, double, double, double[]) - Method in class gov.nih.mipav.model.structures.ModelSimpleImage
-
Binary interpolation call
- Cb_b_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
- Cb_b_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
- Cb_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_color_deconverter
- Cb_g_tab - Variable in class gov.nih.mipav.model.file.libjpeg.my_upsampler_jdmerge
- CBackForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CBackForward
-
Creates a new CBackForward object.
- CBackForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CBackForward
-
Creates a new CBackForward object.
- cbCount() - Method in class gov.nih.mipav.model.file.FileSVS.BitInputStream
- cbCount() - Method in class gov.nih.mipav.model.file.FileTiff.BitInputStream
- cbf_csvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbf_csvd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbf_osvd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbf_osvd_OI - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbf_osvd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbf_svd - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbf_svd_residual - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.cbfStop
-
Creates a new cbfStop object.
- cbfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.cbfStop
-
Creates a new cbfStop object.
- cbgEdgeDetect_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
- cbgImage_ - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
- cblkh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t
-
code-blocks height
- cblkh - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t
-
code-blocks height
- cblksty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t
-
code-block coding style
- cblksty - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t
-
code-block coding style
- cblkw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_info_t
-
code-blocks width
- cblkw - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tccp_t
-
code-blocks width
- cBoxRemap - Variable in class gov.nih.mipav.view.dialogs.JDialogRGBConcat
-
DOCUMENT ME!
- CbReferenceBlack - Variable in class gov.nih.mipav.model.file.FileSVS
- CbReferenceBlack - Variable in class gov.nih.mipav.model.file.FileTiff
- CbReferenceWhite - Variable in class gov.nih.mipav.model.file.FileSVS
- CbReferenceWhite - Variable in class gov.nih.mipav.model.file.FileTiff
- CBRHostName - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat
-
DOCUMENT ME!
- CBRImageDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat
-
DOCUMENT ME!
- CBRProjectionDirectory - Variable in class gov.nih.mipav.model.file.FileInfoMicroCat
-
DOCUMENT ME!
- cbrtOpsinBias - Variable in class gov.nih.mipav.model.file.jxlatte.OpsinInverseMatrix
- cbuf - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.LEFileReader
-
The cbuf.
- cbv - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- cbv_lc - Variable in class gov.nih.mipav.model.algorithms.DSC_MRI_toolbox
- CBZip2InputStream - Class in gov.nih.mipav.model.file
-
An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
- CBZip2InputStream(InputStream) - Constructor for class gov.nih.mipav.model.file.CBZip2InputStream
- CBZip2OutputStream - Class in gov.nih.mipav.model.file
-
An output stream that compresses into the BZip2 format (without the file header chars) into another stream.
- CBZip2OutputStream(OutputStream) - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream
- CBZip2OutputStream(OutputStream, int) - Constructor for class gov.nih.mipav.model.file.CBZip2OutputStream
- CBZip2OutputStream.StackElem - Class in gov.nih.mipav.model.file
- cc - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmWaveletThreshold
-
DOCUMENT ME!
- cc - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- cca - Variable in class gov.nih.mipav.model.algorithms.Cephes
- CCIR601_sampling - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- CCJACS(double[], int, double[], double[], double, double[][]) - Method in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- cConnect - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.ViewJComponentSurface
-
Vertex connection array.
- cconvert - Variable in class gov.nih.mipav.model.file.libjpeg.jpeg_decompress_struct
- ccorder - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- cct - Variable in enum gov.nih.mipav.model.file.charls.color_transformation
- ccw - Variable in class gov.nih.mipav.model.file.FileSVS.RLEBitInputStream
- ccw - Variable in class gov.nih.mipav.model.file.FileTiff.RLEBitInputStream
- ccw(double[][], int, int, int) - Method in class gov.nih.mipav.model.structures.VOIContour
- ccw_rotate_about_source() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
- ccw_rotate_about_target() - Method in class gov.nih.mipav.model.algorithms.LSCM.HalfEdge
- ccwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistration
-
DOCUMENT ME!
- ccwButton - Variable in class gov.nih.mipav.view.ViewJFrameRegistrationTool
-
DOCUMENT ME!
- cd - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGenerateIsolines
- cd - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- CD - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- cData - Variable in class gov.nih.mipav.model.algorithms.AlgorithmGaussianMixtureModelEM.ClassSig
- CDCI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- cdf - Variable in enum gov.nih.mipav.model.file.charls.compressed_data_format
- cdf() - Method in class gov.nih.mipav.model.algorithms.Gamma
- CDF - Static variable in class gov.nih.mipav.model.algorithms.Gamma
- CDF_type - Variable in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- CDF_type - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
-
Use serialVersionUID for interoperability.
- CDFButton - Variable in class gov.nih.mipav.view.dialogs.JDialogBiorthogonalWavelets
- cdff(int, double[], double[], double[], double[], double[], int[], double[]) - Method in class gov.nih.mipav.model.algorithms.CDFLIB
- CDFLIB - Class in gov.nih.mipav.model.algorithms
-
Legalities ========== We place our efforts in writing this package in the public domain.
- CDFLIB() - Constructor for class gov.nih.mipav.model.algorithms.CDFLIB
- cdft(double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cdft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- CDFT_4THREADS_BEGIN_N - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cdft_arg_t() - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cdft_arg_t
- CDFT_THREADS_BEGIN_N - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
-
-------- DST (Discrete Sine Transform) / Inverse of DST -------- [definition]
IDST (excluding scale) S[k] = sum_j=1^n A[j]*sin(pi*j*(k+1/2)/n), 0invalid input: '<'=kinvalid input: '<'n DST S[k] = sum_j=0^n-1 a[j]*sin(pi*(j+1/2)*k/n), 0invalid input: '<'kinvalid input: '<'=n [usage] ip[0] = 0; // first time only ddst(n, 1, a, ip, w); ip[0] = 0; // first time only ddst(n, -1, a, ip, w); [parameters] n :data length (int) n >= 2, n = power of 2 a[0...n-1] :input/output data (double *) input data a[j] = A[j], 0invalid input: '<'jinvalid input: '<'n a[0] = A[n] output data a[k] = S[k], 0invalid input: '<'=kinvalid input: '<'n output data a[k] = S[k], 0invalid input: '<'kinvalid input: '<'n a[0] = S[n] ip[0...*] :work area for bit reversal (int *) length of ip >= 2+sqrt(n/2) strictly, length of ip >= 2+(1invalid input: '<'invalid input: '<'(int)(log(n/2+0.5)/log(2))/2). - cdft2(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cdft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cdft3(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cdft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- CDFWavelets() - Method in class gov.nih.mipav.model.algorithms.filters.BiorthogonalWavelets
- cdiv(double, double, double, double) - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
- cdivi - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
- cdivr - Variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.EigenvalueDecomposition
- cdjpeg_progress_mgr() - Constructor for class gov.nih.mipav.model.file.libjpeg.cdjpeg_progress_mgr
- CDMatrix - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDMatrix() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
-
Constructors
- CDMatrix(int, int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
- CDMatrix(int, int, double[][]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
- CDMatrix(CDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
- CDMatrix(CVisDMatrix) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDMatrix
- CDOptimizeBase - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizeBase() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
-
Constructor
- CDOptimizeBFGS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizeBFGS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBFGS
-
Constructor
- CDOptimizeCG - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizeCG() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeCG
-
Constructor
- CDOptimizeFuncBase - Interface in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizePS - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizePS() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizePS
-
Constructor
- CDOptimizeSA - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizeSA() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSA
-
constructor.
- CDOptimizeSD - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDOptimizeSD() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeSD
-
constructor
- CDVector - Class in gov.nih.mipav.view.renderer.WildMagic.AAM
-
This is the Java modified version of C++ active appearance model API (AAM_API).
- CDVector() - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
constructor
- CDVector(int) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
- CDVector(int, double[]) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
- CDVector(CDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
- CDVector(CVisDVector) - Constructor for class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
- CE_GRAY - Static variable in class gov.nih.mipav.model.file.jxlatte.ColorFlags
- CE_RGB - Static variable in class gov.nih.mipav.model.file.jxlatte.ColorFlags
- CE_UNKNOWN - Static variable in class gov.nih.mipav.model.file.jxlatte.ColorFlags
- CE_XYB - Static variable in class gov.nih.mipav.model.file.jxlatte.ColorFlags
- ce2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
- ce2 - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
- ceButton - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmImageCalculator
-
DOCUMENT ME!
- cEchoRQ - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification
-
Echo request object.
- cEchoRSP - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Verification
-
Echo response object.
- ced_Table - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateEvaluationSegmentation_jmi
- cedHashtable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_miccai
- cedImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- cedImageFAT - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- cedImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- cedImageGRE - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale_test
- cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_boundary_ced_scale
- cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_test
- cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale_train
- cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_ced_scale
- cedImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterMICCAI_conversion
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_test
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_boundary_train
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_test
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale_train
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterCentralGland_CED_scale
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_noCED
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_boundary_train
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train
- cedTable - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverter_JMI
- cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTest_JMI
- cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstate2DSlicesAtlasPngConverterTrain_JMI
- cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext_wp
- cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallengeNIH_train_ced_ext
- cedTable_ext - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
- cedTableAxial - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
- cedTableCoronal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees_90_data_train_extraction
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI_10_3D_orthogonal_pre
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogSKI10_femur_eval_pre
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.Knees_90_data_train_extraction
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12_2DVolumetrieHED
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogPromise12NIHDataToNii
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstate
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTestPatches
- cedTableSagittal - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateXReRunWholeProstateTrainPatches
- ceil() - Method in class gov.nih.mipav.util.DoubleDouble
-
Returns the smallest (closest to negative infinity) value that is not less than the argument and is equal to a mathematical integer.
- Ceil() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDVector
-
Takes ceil() of each element.
- ceilDiv(int, int) - Method in class gov.nih.mipav.model.file.jxlatte
- ceilLog1p(long) - Method in class gov.nih.mipav.model.file.jxlatte
- ceilLog1pSt(long) - Static method in class gov.nih.mipav.model.file.jxlatte
- ceilLog2(long) - Method in class gov.nih.mipav.model.file.jxlatte
- ceilLog2St(long) - Static method in class gov.nih.mipav.model.file.jxlatte
- cel12(double, double) - Method in class gov.nih.mipav.model.algorithms.EllipticIntegral
-
Routine cel12 only calculates complete integrals of the first and second kind with complex arguments Based on the arithmetic-geometric mean procedure Ported from Tohru Morita article.
- Cell() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Cell
- Cell(int, int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.Cell
- CELL - Static variable in class gov.nih.mipav.model.file.FileNRRD
-
The location of the sample is located in the interior of the grid element.
- cell_infos_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.BlockRandomAccessDenseMatrix
- cell_statistics() - Method in class gov.nih.mipav.model.structures.Voro
- cell_values_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolver2.BlockRandomAccessSparseMatrix
- cellData - Variable in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
support for vtk
- cellEditor - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
- CellInfo() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
- CellInfo(double[], int) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellInfo
- CellLessThan() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CellLessThan
- cellRenderer - Variable in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- cells - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.CompressedList
- cellSpace - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
54 Cell spacing.
- celltype(boolean, boolean, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
- celltype(boolean, boolean, boolean, boolean, boolean, boolean) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot
- cen_index(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- cenFreq - Variable in class gov.nih.mipav.model.file.FileInfoGESigna5X
-
296 Center frequency method.
- cenMassPt - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Stores the black and white center of mass of the contour of a VOI.
- cenMassPtB - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Stores the blue center of mass of the contour of a VOI.
- cenMassPtG - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Stores the green center of mass of the contour of a VOI.
- cenMassPtR - Variable in class gov.nih.mipav.model.structures.VOIBase
-
Stores the red center of mass of the contour of a VOI.
- censoring - Variable in class gov.nih.mipav.model.algorithms.WeibullDistribution.Analysis
- CENSY - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- center - Variable in class gov.nih.mipav.model.algorithms.AlgorithmTransform
-
DOCUMENT ME!
- center - Variable in class gov.nih.mipav.model.algorithms.DBSCANClusteringSegment
- center - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
- center - Variable in class gov.nih.mipav.model.structures.ComputationalGeometry.Bounds
- center - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
- center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.BurnAttributes
-
burn center.
- center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
Burning point coordinate.
- center - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute
-
Burning center coordinate.
- center - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- center() - Method in class gov.nih.mipav.view.PatientSlice
-
Calculate the volume center in PatientCoordinates and set the z-value for this slice.
- center() - Method in class gov.nih.mipav.view.renderer.J3D.model.structures.ModelTriangleMesh
-
Calculates and returns the center point of the Mesh:
- center() - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Box3
- center(double[]) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
-
Centers the FFT for display purposes.
- center(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT2
- center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFFT
- center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
-
Centers the FFT for display purposes.
- center(float[], float[]) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
-
Centers the FFT for display purposes.
- center(SchwarzChristoffelMapping.scmap, double[], double[][]) - Method in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping
- Center - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetState
-
Widget Center:
- Center - Variable in class gov.nih.mipav.view.renderer.WildMagic.VolumeRenderState
- center_fix_mt - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
- center_fix_quadnum - Variable in class gov.nih.mipav.model.algorithms.SchwarzChristoffelMapping.scmap
- center_frequency - Variable in class gov.nih.mipav.model.algorithms.filters.PyWavelets.ContinuousWavelet
- CENTER_VOI - Static variable in class gov.nih.mipav.view.ViewJComponentBase
-
DOCUMENT ME!
- centerAndWidth(Point3D, float[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
- CenterAndWidth(int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
- CenterAndWidth(int, int, float[], float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
- CenterAndWidth(long, Point3D, float[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
- centerBox - Variable in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
- centerButtonSelected - Variable in class gov.nih.mipav.view.ViewJFrameTriImage
-
DOCUMENT ME!
- centerCenter - Variable in class gov.nih.mipav.model.file.FileInfoInterfile
-
DOCUMENT ME!
- CenterCount(int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.BinaryNode
- centered_gradient(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.TVL1FLOW
-
Function to compute the gradient with centered differences
- CENTERED1 - Variable in class gov.nih.mipav.model.algorithms.CVODES
- CENTERED2 - Variable in class gov.nih.mipav.model.algorithms.CVODES
- centerGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
- centerGroup - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
- centerid - Variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
id of rotation center
- centerInComponent(Component, JDialog) - Static method in class gov.nih.mipav.view.MipavUtil
-
Sets the location of the dialog to the center of the parent component.
- centerIndex(int, int[]) - Method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.OctNode
- CenterIndex(int, int[], int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
- CenterIndex(OctNode, int) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
- CenterIndex(OctNode, int, int[]) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.VertexData
- centerInWindow(Window, Window) - Static method in class gov.nih.mipav.view.MipavUtil
-
Sets the location of the window to the center of the parent window.
- CENTERJSAMPLE - Variable in class gov.nih.mipav.model.file.libjpeg
- centerLabel - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe
-
burning point center label.
- centerLine - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- CenterOfGravity(double[][]) - Method in class gov.nih.mipav.model.algorithms.registration.ImRegPOC
- centerOfMass - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractBrain
-
The volume's center of mass computed from
computeCenter(ModelImage, int, boolean) - centerOfRotation - Variable in class gov.nih.mipav.model.file.FileInfoMetaImage
-
Use serialVersionUID for interoperability.
- centerOnScreen(Window) - Static method in class gov.nih.mipav.view.MipavUtil
-
Sets the location of the window to the center of the screen.
- CenterPoint() - Method in class gov.nih.mipav.view.renderer.WildMagic.AAM.CAAMTriangle
-
Returns the center point of the triangle.
- CenterPointX - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CenterPointY - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- CenterPointZ - Variable in class gov.nih.mipav.model.file.FileInfoMagnetomVision
-
DOCUMENT ME!
- centerPositions - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- centerPtLocation - Variable in class gov.nih.mipav.view.ViewJComponentSingleRegistration
-
location of the center pt VOI (for registration rotation).
- centerRB - Variable in class gov.nih.mipav.view.dialogs.JDialogTransformVOI
- centerRootNode() - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphPanel
-
Centers the root node in the display.
- centerRootNodeButton - Variable in class gov.nih.mipav.view.graphVisualization.JDialogHyperGraph
- centers - Variable in class gov.nih.mipav.model.file.FileNRRD
-
May remain null or may be created as NONE, CELL, or NODE.
- centers_ - Variable in class gov.nih.mipav.model.algorithms.CeresSolverTest
- centerSpline - Variable in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- centerTransform - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.MaskBurnAttribute
-
Burning center tranform.
- centerVOI - Variable in class gov.nih.mipav.view.ViewJComponentRegistration
-
center rotation VOI
- centerWeightContribution - Variable in class gov.nih.mipav.view.renderer.WildMagic.Poisson.Octree.TreeNodeData
- centerX - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
-
angles are passed to setRotate.
- centerX - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse
-
Canvas center coordinate.
- centerY - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
-
angles are passed to setRotate.
- centerY - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelCamera.StandardMouse
-
Canvas center coordinate.
- centerZ - Variable in class gov.nih.mipav.view.dialogs.JDialogTriImageTransformation
-
angles are passed to setRotate.
- CENTIMETERS - Enum constant in enum gov.nih.mipav.model.file.FileInfoBase.Unit
-
Unit of measurement centimeters.
- CENTIMETERS - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
Unit of measurement centimeters.
- CENTIMETERS_STRING - Static variable in class gov.nih.mipav.model.file.FileInfoBase
-
String version of units of measurement - centimeters.
- CENTR - Variable in class gov.nih.mipav.model.algorithms.SymmsIntegralMapping
- CENTRAL - Enum constant in enum gov.nih.mipav.model.algorithms.CeresSolver.NumericDiffMethodType
- central_frequency(PyWavelets.ContinuousWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- central_frequency(PyWavelets.DiscreteWavelet, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- centralBuffer - Variable in class gov.nih.mipav.view.dialogs.JDialogRunScriptView
-
DOCUMENT ME!
- CentralDifference - Static variable in class gov.nih.mipav.view.renderer.WildMagic.AAM.CDOptimizeBase
- centroid(double[], double[], double[]) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Calculates the centroid of the Voronoi cell, by decomposing the cell into tetrahedra extending outward from the zeroth vertex.
- centroidDistances - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- centroidDistances - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
- centroidPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmKMeans
- centroidPos - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSpectralClustering
- centroidPos - Variable in class gov.nih.mipav.view.dialogs.JDialogKMeans
- centroidPos - Variable in class gov.nih.mipav.view.dialogs.JDialogSpectralClustering
- centroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmFuzzyCMeans
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMSpectralFuzzyCMeans
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmProstateFeatures
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogCentroidThreshold
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogInitialCentroids
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
DOCUMENT ME!
- centroids - Variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSaveFeatures
-
DOCUMENT ME!
- ceo - Variable in enum gov.nih.mipav.model.file.charls.encoding_options
- Cephes - Class in gov.nih.mipav.model.algorithms
-
Correct values for ndtri are taken from scipy-main/scipy/special/tests/test_ndtr.py under the BSD-3 license: Copyright (c) 2001-2002 Enthought, Inc. 2003-2022, SciPy Developers.
- Cephes() - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(double, double[], int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(double, double, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(double, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(double, int, double[], double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(int, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(int, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- Cephes(int, int, double, int, double[]) - Constructor for class gov.nih.mipav.model.algorithms.Cephes
- CERES_CURVE_FITTING - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- CERES_NO_CXSPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
- CERES_NO_SUITESPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
- CERES_USE_EIGEN_SPARSE - Variable in class gov.nih.mipav.model.algorithms.CeresSolver
- CeresSolver - Class in gov.nih.mipav.model.algorithms
-
This is a port of the C++ files in ceres-solver-1.14.0 under the BSD license: Ceres Solver - A fast non-linear least squares minimizer Copyright 2015 Google Inc.
- CeresSolver() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver
- CeresSolver.ArctanLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ArmijoLineSearch - Class in gov.nih.mipav.model.algorithms
- CeresSolver.AutoDiffCostFunction<CostFunctor> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BadTestTerm - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BFGS - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Block - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockEvaluatePreparer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockJacobianWriter - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockJacobiPreconditioner - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockRandomAccessDenseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockRandomAccessDiagonalMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockRandomAccessMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockSparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.BlockSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CallbackReturnType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.CallStatistics - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CauchyLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Cell - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CellInfo - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CellLessThan - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CgnrLinearOperator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CgnrSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Chunk - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ComposedLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CompressedList - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CompressedRowBlockStructure - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CompressedRowJacobianWriter - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CompressedRowJacobianWriter.indexintintComparator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CompressedRowJacobianWriter.indexintintItem - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CompressedRowSparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ConjugateGradientsSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Context - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CoordinateDescentMinimizer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Corrector - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CostFunctorExample - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CovarianceAlgorithmType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.CRSMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.CurveFittingFunctorExample - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DenseJacobianWriter - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DenseLinearAlgebraLibraryType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.DenseNormalCholeskySolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DenseQRSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DenseSchurComplementSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DenseSparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DoglegStrategy - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DoglegType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.DumpFormatType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.DynamicCompressedRowJacobianFinalizer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DynamicCompressedRowJacobianWriter - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DynamicCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.DynamicNumericDiffCostFunction<T> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EasyCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EasyFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EigenQuaternionParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EvaluateOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EvaluateScratch - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EvaluationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Evaluator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EvaluatorOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.EventLogger - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ExecutionSummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ExponentialCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ExponentialFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.FirstOrderFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.FunctionSample - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GoodTestTerm - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientChecker - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientCheckingCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientCheckingIterationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientProblem - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientProblemEvaluator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientProblemSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientProblemSolverOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientProblemSolverStateUpdatingCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolver.GradientProblemSolverSummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Graph<Vertex> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.HomogeneousVectorParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.HuberLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.IdentityParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ImplicitSchurComplement - Class in gov.nih.mipav.model.algorithms
- CeresSolver.indexValueItem<Vertex> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.IterationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolver.IterationSummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.IterativeSchurComplementSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LBFGS - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LevenbergMarquardtStrategy - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearCostFunction - Class in gov.nih.mipav.model.algorithms
-
Helper cost function that multiplies the parameters by the given jacobians and adds a constant offset.
- CeresSolver.LinearLeastSquaresProblem - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearOperator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearSolverOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearSolverPerSolveOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearSolverSummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LinearSolverTerminationType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.LinearSolverType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearch - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchDirection - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchDirectionOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchDirectionType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchInterpolationType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchMinimizer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchMinimizer.State - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchPreprocessor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchSummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LineSearchType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.LocalParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LoggingCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LoggingType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.LossFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LossFunctionWrapper - Class in gov.nih.mipav.model.algorithms
- CeresSolver.LowRankInverseHessian - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Minimizer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.MinimizerOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.MinimizerType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.MyCostFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.MyThreeParameterCostFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.NonlinearConjugateGradient - Class in gov.nih.mipav.model.algorithms
- CeresSolver.NonlinearConjugateGradientType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.NormalPrior - Class in gov.nih.mipav.model.algorithms
- CeresSolver.NullJacobianFinalizer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.NumericDiffCostFunction<CostFunctor> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.NumericDiffMethodType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.NumericDiffOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.OnlyFillsOneOutputFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.OrderedGroups<T> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Ownership - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.Pair<T,
U> - Class in gov.nih.mipav.model.algorithms - CeresSolver.ParameterBlock - Class in gov.nih.mipav.model.algorithms
- CeresSolver.PartitionedMatrixView - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Preconditioner - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Preconditioner.Options - Class in gov.nih.mipav.model.algorithms
- CeresSolver.PreconditionerOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.PreconditionerType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.PreprocessedProblem - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Preprocessor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ProbeResults - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ProblemImpl - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ProblemOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ProductParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Program - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ProgramEvaluator<EvaluatePreparer,
JacobianWriter, - Class in gov.nih.mipav.model.algorithmsJacobianFinalizer> - CeresSolver.QuaternionParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.RandomizedCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.RandomizedFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ResidualBlock - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ScaledLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SchurComplementSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SchurEliminator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SchurEliminatorBase - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SchurJacobiPreconditioner - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ScopedExecutionTimer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.ScratchEvaluatePreparer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SizedCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SizeTestingCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SoftLOneLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.Solver - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SolverOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SolverSummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SparseLinearAlgebraLibraryType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.SparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SparseMatrixPreconditionerWrapper - Class in gov.nih.mipav.model.algorithms
- CeresSolver.StateUpdatingCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SteepestDescent - Class in gov.nih.mipav.model.algorithms
- CeresSolver.SubsetParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TerminationType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.TestTerm - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TolerantLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TranscendentalCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TranscendentalFunctor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TripletSparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TripletSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrivialLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionMinimizer - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionPreprocessor - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionStepEvaluator - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionStrategy - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionStrategyOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionStrategyPerSolveOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionStrategySummary - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TrustRegionStrategyType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.TukeyLoss - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TypedLinearSolver<MatrixType> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.TypedPreconditioner<MatrixType> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.VertexDegreeLessThan<Vertex> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.VertexTotalOrdering<Vertex> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.VisibilityClusteringType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver.WeightedGraph<Vertex> - Class in gov.nih.mipav.model.algorithms
- CeresSolver.WolfeLineSearch - Class in gov.nih.mipav.model.algorithms
- CeresSolver2 - Class in gov.nih.mipav.model.algorithms
-
This is a port of the C++ files in ceres-solver-1.14.0 under the BSD license: Ceres Solver - A fast non-linear least squares minimizer Copyright 2015 Google Inc.
- CeresSolver2() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver2
- CeresSolver2.BiCubicInterpolator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.BlockRandomAccessSparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.CanonicalViewsClustering - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.CanonicalViewsClusteringOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.CompressedRowSparseMatrixRandomMatrixOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.ConditionedCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.CovarianceImpl - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.CovarianceOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.CubicInterpolator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.DynamicCompressedRowSparseMatrix - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.Grid1D - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.Grid2D - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexArrayArrayComparator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexArrayArrayItem - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexArrayComparator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexArrayItem - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexIntegerdoubleArrayComparator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexIntegerdoubleArrayItem - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.indexRowColItem - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.RowColLessThanComparator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.SingleLinkageClusteringOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.StorageType - Enum in gov.nih.mipav.model.algorithms
- CeresSolver2.Triplet<T,
U, - Class in gov.nih.mipav.model.algorithmsV> - CeresSolver2.VertexTotalOrderingInteger - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.weighted_edgesComparator - Class in gov.nih.mipav.model.algorithms
- CeresSolver2.weighted_edgesItem - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverNISTTest
- CeresSolverNISTTest.Bennett5CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.BoxBODCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Chiwrut1CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Chiwrut2CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.DanwoodCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Eckerle4CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.ENSOCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Gauss1CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Gauss2CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Gauss3CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Hahn1CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Kirby2CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Lanczos1CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Lanczos2CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Lanczos3CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.MisralaCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.MisralbCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.MisralcCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.MisraldCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.NelsonCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Rat42CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Rat43CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.Roszman1CostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverNISTTest.ThurberCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest() - Constructor for class gov.nih.mipav.model.algorithms.CeresSolverTest
- CeresSolverTest.AbortingIterationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BadJacobianCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BadLocalParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BadResidualCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BardFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BealeFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BIGGS_EXP6Function - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BinaryCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BinaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BinaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BinaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BlockJacobiPreconditionerTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BlockSparseMatrixTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.Box3DFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BrownAndDennisFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.BrownBadlyScaledFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.CurveCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.CurveFittingCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DenseSparseMatrixTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DestructorCountingCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureEllipse - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureEllipseCorrectGaussNewtonStep - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedSubspace - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureEllipseTrustRegionObeyedTraditional - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureEllipseValidSubspaceBasis - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureValley - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepGlobalOptimumAlongGradient - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DoglegStrategyFixtureValleyCorrectStepLocalOptimumAlongGradient - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DummyCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DummyCostFunction2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DummyCostFunction3 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DummyCostFunction4 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.DynamicProblem - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.EvaluatorTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.EvaluatorTestOptions - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ExpCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ExpectedEvaluation - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.FailingCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.FakeIterationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.Fixture - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.FreudensteinAndRothFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.FreudensteinAndRothJacobianFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.GaussianFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.GoodCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.GulfResearchAndDevelopmentFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.HelicalValleyFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ImplicitSchurComplementTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.IterativeSchurComplementSolverTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.JennrichAndSampsonFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.KowalikAndOsborneFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.LinearCostFunction2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.LinearSolverAndEvaluatorCreationTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.LocallyParameterizedCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.MatrixParameterization - Class in gov.nih.mipav.model.algorithms
-
Helper local parameterization that multiplies the delta vector by the given jacobian and adds it to the parameter.
- CeresSolverTest.MeyerFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.MockCostFunctionBase - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.MockCostFunctionBase2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.NoJacobianUpdateCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.NoOpEvaluationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.NoResidualUpdateCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.NumParameterBlocksCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.Osborne1Function - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.Osborne2Function - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ParameterIgnoringCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ParameterSensitiveCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.PartitionedMatrixViewTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.PolynomialParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.PowellBadlyScaledFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.PowellEvaluator2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.PowellSingularFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.PowellSingularJacobianFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ProductParameterizationTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.QuadraticCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.QuadraticFirstOrderFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.QuadraticFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.QuadraticTestFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.RegularizationCheckingLinearSolver - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.RememberingCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.Rosenbrock - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.Rosenbrock2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.SchurEliminatorTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.SchurOrderingTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.SucceedingIterationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.TernaryCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.TernaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.TernaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.TernaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.TestParameterization - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.ThreeParameterCostFunctorTest - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.UnaryCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.UnaryCostFunction2 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.UnaryCostFunction3 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.UnaryCostFunction4 - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.UnaryIdentityCostFunction - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.WigglyBowlCostFunctionAndEvaluationCallback.InnerClass - Class in gov.nih.mipav.model.algorithms
- CeresSolverTest.WoodFunction - Class in gov.nih.mipav.model.algorithms
- cerOff - Variable in class gov.nih.mipav.model.file.FileJP2
- cerOn - Variable in class gov.nih.mipav.model.file.FileJP2
- CETM(double[][], int[][], int[]) - Constructor for class gov.nih.mipav.model.algorithms.Confmap.CETM
- cf - Variable in class gov.nih.mipav.model.algorithms.AlgorithmMeanShiftSegmentation
- cf - Variable in class gov.nih.mipav.model.file.jxlatte.ColorEncodingBundle
- cf - Variable in class gov.nih.mipav.model.file.jxlatte.ColorManagement
- cfa_channel - Variable in class gov.nih.mipav.model.file.libxl.ExtraChanelInfo
-
Only applicable if type is JXL_CHANNEL_CFA.
- cfactor - Variable in class gov.nih.mipav.model.structures.jama.METIS.ctrl_t
- cFactor - Variable in class gov.nih.mipav.model.algorithms.AlgorithmSeparableConvolver
-
Buffer size adjustment for color images.
- cFactor - Variable in class gov.nih.mipav.model.file.rawjp2.ImgReaderRAWColorSlice
- cFactor - Variable in class gov.nih.mipav.model.file.rawjp2.ImgWriterRAWColor
- cFactor - Variable in class gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection
-
Used for construction of the preview.
- cfaIndex - Variable in class gov.nih.mipav.model.file.jxlatte.ExtraChannelInfo
- Cfbf - Enum constant in enum gov.nih.mipav.model.file.MetadataExtractor.FileType
- cFFp(int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.Face
- cfft(double[][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cfft2(double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cfft3(double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cFindRq - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query
-
cFind request object.
- cFindRsp - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Query
-
CResponse (Find response) object.
- CForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.CForward
-
Creates a new CForward object.
- CForward() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.CForward
-
Creates a new CForward object.
- cForwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- cForwardButton - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
DOCUMENT ME!
- cfrft(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cfrftV2(double[][], double) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cfrftV3(double[][][], double, double[][][], double[][][], int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cfrftV3_precomp(double[][][], double[][][], int, double[]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimate
-
DOCUMENT ME!
- cfRun - Variable in class gov.nih.mipav.view.ViewJFrameAnimateClip
-
DOCUMENT ME!
- cfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimate.cfStop
-
Creates a new cfStop object.
- cfStop() - Constructor for class gov.nih.mipav.view.ViewJFrameAnimateClip.cfStop
-
Creates a new cfStop object.
- cftb040(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftb1st(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftbsub(int, double[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftf040(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftf081(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftf082(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftf161(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftf162(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftf1st(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftfsub(int, double[], int[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftfx41(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftleaf(int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftmdl1(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftmdl2(int, double[], double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftrec1_th(DiscreteSineTransform.cdft_arg_t) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec1_th
- cftrec2_th(DiscreteSineTransform.cdft_arg_t) - Constructor for class gov.nih.mipav.model.algorithms.DiscreteSineTransform.cftrec2_th
- cftrec4(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftrec4_th(int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cfttree(int, int, int, double[], int, double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- cftx020(double[]) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- CG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- CG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- CG(double[][][][], int[], double[], int[], double[], boolean, double[][][][], double[][][][], double, int, double[][][][], boolean, double[][][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- CG(double[][][], int[], double[], int[], double[], double[][][], double, int, double[][][], boolean, double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- cgamma() - Method in class gov.nih.mipav.model.algorithms.Gamma
-
This code is a port of the FORTRAN routine CGAMA from the book Computation of Special Functions by Shanjie Zhang and Jianming Jin, John Wiley invalid input: '&' Sons, Inc., 1996, pp. 51-52.
- CGAMMA - Static variable in class gov.nih.mipav.model.algorithms.Gamma
-
Compute gamma function or log of gamma function for complex arguments
- cgau(double[], double[], double[], int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- CGAU - Enum constant in enum gov.nih.mipav.model.algorithms.filters.PyWavelets.WAVELET_NAME
- cgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- cgmo(double[][][][], double[], ModelImage, double[], int, int, double, double, String, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
cgmo for color Compute the color gradient at a single scale and multiple orientations
- cgmo(double[][][][], double[], ModelImage, double[], int, String, double[]) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- cgmo(double[][][], double[], ModelImage, double, int, int, double, String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
-
cgmo for black and white Compute the color gradient at a single scale and multiple orientations
- cgmo(double[][][], double[], ModelImage, double, int, String, double) - Method in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- CGNR - Enum constant in enum gov.nih.mipav.model.algorithms.CeresSolver.LinearSolverType
- CgnrLinearOperator(CeresSolver.LinearOperator, double[]) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CgnrLinearOperator
- CgnrSolver(CeresSolver.LinearSolverOptions) - Constructor for class gov.nih.mipav.model.algorithms.CeresSolver.CgnrSolver
- CGTG - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmPbBoundaryDetection
- CGTG - Static variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- cgtgButton - Variable in class gov.nih.mipav.view.dialogs.JDialogPbBoundaryDetection
- ch - Variable in class gov.nih.mipav.model.algorithms.AlgorithmEmbeddedConfidenceEdgeDetection
- ch - Variable in class gov.nih.mipav.model.file.FileJPEG2000.opj_tcd_precinct_t
- ch - Variable in class gov.nih.mipav.model.file.MetadataExtractor.PngMetadataReader
-
The PNG spec states that ISO_8859_1 (Latin-1) encoding should be used for: "tEXt" and "zTXt" chunks, both for keys and values (https://www.w3.org/TR/PNG/#11tEXt) "iCCP" chunks, for the profile name (https://www.w3.org/TR/PNG/#11iCCP) "sPLT" chunks, for the palette name (https://www.w3.org/TR/PNG/#11sPLT) Note that "iTXt" chunks use UTF-8 encoding (https://www.w3.org/TR/PNG/#11iTXt).
- ch - Variable in class gov.nih.mipav.model.file.MetadataExtractorTest.PngDescriptorTest
- ch - Variable in class gov.nih.mipav.view.dialogs.JDialogEmbeddedConfidenceEdgeDetection
- ch_id - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
A pointer to the next available slot on the current particle ID chunk.
- ch_p - Variable in class gov.nih.mipav.model.structures.Voro.pre_container_base
-
A pointer to the next available slot on the current floating point chunk.
- ch2 - Variable in class gov.nih.mipav.model.file.CBZip2InputStream
- chamfer - Variable in class gov.nih.mipav.view.dialogs.JDialogRegistrationChamfer
-
Algorithm this dialog will call.
- chan - Static variable in class gov.nih.mipav.model.algorithms.AlgorithmActiveContoursWithoutEdges
- chan - Static variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
Use serialVersionUID for interoperability.
- change_inner_max_epoch(Matrix, Matrix, NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- Change2CNumbering(int, int[], int[]) - Method in class gov.nih.mipav.model.structures.jama.METIS
- changeAll - Variable in class gov.nih.mipav.model.scripting.actions.ActionChangeResolutions
-
Whether or not to change all fileinfos/slices.
- changeBounds(float, float, boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogWinLevel
-
overrides and expands the min/max and or the window/level boundaries of an image based on the transfer function being applied
- changeButton - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
-
this is the action button to change
- changed - Variable in class gov.nih.mipav.model.dicomcomm.DICOM_Receiver
-
DOCUMENT ME!
- changeDicomFileSize(RandomAccessFile, long, long, int) - Method in class gov.nih.mipav.model.file.FileDicom
- changedMode - Variable in class gov.nih.mipav.view.renderer.flythroughview.JPanelFlythruMove
-
flag to indicate current mode being changed.
- changedMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse
-
flag to indicate current mode being changed.
- changedMode - Variable in class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter
-
flag to indicate current mode being changed.
- changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogDicomTagSelector.TagInputListener
- changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.MaximumLinesDocumentListener
- changedUpdate(DocumentEvent) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations
- changedValues - Variable in class gov.nih.mipav.model.file.FileInfoGESigna4X
-
DOCUMENT ME!
- changedValuesBitmap - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- changedValuesString - Variable in class gov.nih.mipav.model.file.FileGESigna4X
- changeEvent - Variable in class gov.nih.mipav.view.ImageRegistryMonitor
-
DOCUMENT ME!
- changeEvent - Variable in class gov.nih.mipav.view.ViewJFrameMemory.MemoryMonitor
-
DOCUMENT ME!
- changeExtents(int[]) - Method in class gov.nih.mipav.model.structures.ModelImage
-
Changes the image dimensionality or extents.
- changeFilenameBox - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
DOCUMENT ME!
- changeIcon(String, String) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer
- changeImageName(String, String) - Method in class gov.nih.mipav.model.scripting.ImageVariableTable
-
Finds an image name in the table and changes it to a new value with the same variable placeholder (does nothing if the value is not in the table).
- changeItoJ(LODMesh.Vertices, LODMesh.Vertices) - Method in class gov.nih.mipav.view.renderer.WildMagic.Decimate.LODMesh.Triangle
- changeLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogChangeMaskNumber
-
this is the text in the Dialog
- changeLAF(String) - Method in class gov.nih.mipav.model.algorithms.Backpropagation.MainFrame
- changeMaskNumberDialog - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
-
Ref to JDialogChangeMaskNumber
- changeMenuEnables() - Method in class gov.nih.mipav.view.ViewJFrameImage
-
Routine to enable some menu items and disable othter menu items when the dimensionality or type of the image is changed.
- ChangeNameDialog(RenderViewBase) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.JPanelMousePlotter.ChangeNameDialog
-
Constructor of change name dialog.
- ChangeNameDialog(SurfaceRender) - Constructor for class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelMouse.ChangeNameDialog
-
Constructor of change name dialog.
- ChangeOrientation() - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.Triangle2
- ChangeOrientation() - Method in class gov.nih.mipav.model.structures.ComputationalGeometry.Triangle3
- changeOrientationOrigin - Variable in class gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip
-
Whether orientation and origin should change with flipping.
- changeOrientationOrigin - Variable in class gov.nih.mipav.view.dialogs.JDialogFlip
- changePolyMode(int) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.JPanelSurface
-
Changes the polygon mode of the selected surface by detaching it, calling the appropriate method, and reattaching it.
- changePolyMode(WireframeState.FillMode) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanelSurface_WM
-
Changes the polygon mode of the selected surface by detaching it, calling the appropriate method, and reattaching it.
- changeRecordingStatus(int) - Method in interface gov.nih.mipav.model.scripting.ScriptRecordingListener
-
Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
- changeRecordingStatus(int) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder
-
Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
- changeRecordingStatus(int) - Method in class gov.nih.mipav.view.ViewUserInterface
-
Alerts the listener to a change in whether the ScriptRecorder is currently recording a script.
- changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
-
DOCUMENT ME!
- changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
DOCUMENT ME!
- changeRemoveIndex - Variable in class gov.nih.mipav.view.dialogs.JDialogSIFT
- changeResolutions(ModelImage, float[]) - Method in class gov.nih.mipav.model.algorithms.utilities.AlgorithmMatchImages
-
Changes the resolutions of the input image.
- changeSaturation(int, double) - Static method in class gov.nih.mipav.model.algorithms.ContourPlot.ColorOperations
-
Changes the saturation of a color.
- changeScriptEditingAbility(boolean) - Method in class gov.nih.mipav.view.dialogs.JDialogScriptRecorder
-
Changes whether the current script can be edited by hand (which pauses the script recording while the editing is being done.
- changeSize() - Method in class gov.nih.mipav.view.dialogs.JDialogRunScriptView
-
DOCUMENT ME!
- changeToUnsignedInts - Variable in class gov.nih.mipav.model.file.FilePARREC
- changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogConvertType
-
DOCUMENT ME!
- changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogImageInfo
-
DOCUMENT ME!!
- changeTypeAlgo - Variable in class gov.nih.mipav.view.dialogs.JDialogInvert
-
DOCUMENT ME!
- changeVOIOrder(boolean, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- channel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelArray - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
- channelButton - Variable in class gov.nih.mipav.view.dialogs.JDialogActiveContoursWithoutEdges
-
DOCUMENT ME!
- channelColorsComboBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
corresponding dropdown for each channel image
- ChannelComponent(String, Integer) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent
-
Creates a new ChannelComponent object.
- channelComponentNumber - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo.ChannelComponent
- channelComponents - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
-
DOCUMENT ME!
- channelDataTypes - Variable in class gov.nih.mipav.model.file.FileInfoLSM
-
DOCUMENT ME!
- channelDataTypes - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- channelDescription - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- channelID - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- channelImages - Variable in class gov.nih.mipav.model.algorithms.DiffusionTensorImaging.AlgorithmDTIColorDisplay
-
extraced 3D Model Images from image...red Image is [0], green image is [1], blue image is [2] *
- channelImages - Variable in class gov.nih.mipav.view.dialogs.JDialogConvert4DtoRGB
-
extraced 3D Model Images from src image
- channelImages - Variable in class gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.AlgorithmDTIColorDisplay
-
extraced 3D Model Images from image...red Image is [0], green image is [1], blue image is [2] *
- ChannelInfo(String, Integer, String, Integer, String, String, String, Integer, Integer, String, Float) - Constructor for class gov.nih.mipav.model.file.FileInfoOME.OME.Image.ChannelInfo
-
Creates a new ChannelInfo object.
- channelInfos - Variable in class gov.nih.mipav.model.file.FileInfoOME.OME.Image
-
DOCUMENT ME!
- channelMap - Variable in class gov.nih.mipav.view.ViewOpenImageSequence
-
DOCUMENT ME!
- channelName - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- channelName0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelName1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelName2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelName3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelNameChannel0 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelNameChannel1 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelNameChannel2 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelNameChannel3 - Variable in class gov.nih.mipav.model.file.FileInfoZVI
- channelNames - Variable in class gov.nih.mipav.model.file.FileInfoLSM
-
DOCUMENT ME!
- channelNames - Variable in class gov.nih.mipav.model.file.FileLSM
-
DOCUMENT ME!
- channelNumber - Variable in class gov.nih.mipav.model.file.FileInfoLIFF
- channelNumber - Variable in class gov.nih.mipav.model.file.FileZVI
- channelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaFileComparator
-
DOCUMENT ME!
- channelOrder - Variable in class gov.nih.mipav.view.dialogs.JDialogSelectChannelSequence
-
DOCUMENT ME!
- channels - Variable in class gov.nih.mipav.model.algorithms.libdt.DatDescriptor
- channels - Variable in class gov.nih.mipav.model.algorithms.libdt.Mat
- channels - Variable in class gov.nih.mipav.model.file.FileICS
-
DOCUMENT ME!
- channels - Variable in class gov.nih.mipav.model.file.FileInfoICS
-
DOCUMENT ME!
- channels - Variable in class gov.nih.mipav.model.file.FileInfoLSM
-
DOCUMENT ME!
- channels - Variable in class gov.nih.mipav.model.file.FileTiff
- channels - Variable in class gov.nih.mipav.model.file.jxlatte.ModularStream
- channels - Variable in class gov.nih.mipav.view.dialogs.JDialogLoadLeica.LeicaSeries
-
DOCUMENT ME!
- channelsFound - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- channelWeight - Variable in class gov.nih.mipav.model.file.FileInfoCZI
- CHAR - Static variable in class gov.nih.mipav.model.file.FileDM3
-
DOCUMENT ME!
- CHAR - Static variable in class gov.nih.mipav.view.dialogs.JDialogEditor
-
DOCUMENT ME!
- CharacterAtlas() - Constructor for class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
- characterCode - Variable in class gov.nih.mipav.model.file.FileSVS
- characterCode - Variable in class gov.nih.mipav.model.file.FileTiff
- characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ColSpliterator
- characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgAreaSpliterator
- characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.ImgSpliterator
- characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.Iterators.RowSpliterator
- characteristics() - Method in class gov.nih.mipav.model.algorithms.ContourPlot.PixelConvertingSpliterator
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileDataProvenance.ProvenanceXMLHandler
-
DOCUMENT ME!
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileImageXML.MyXMLHandler
-
Text data callback from parser.
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileOME.MyXMLHandler
-
Text data callback from parser.
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FilePolylineVOIXML.MyXMLHandler
-
DOCUMENT ME!
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.MyXMLHandler
-
DOCUMENT ME!
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.XMLAnnotationHandler
-
DOCUMENT ME!
- characters(char[], int, int) - Method in class gov.nih.mipav.model.file.FileVOI.XMLCoordHandler
-
DOCUMENT ME!
- characters(char[], int, int) - Method in class gov.nih.mipav.view.dialogs.MyXMLHandler
-
DOCUMENT ME!
- characters(char[], int, int) - Method in class gov.nih.mipav.view.graphVisualization.MipavGraphXMLContentHandler
- characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceRefXML_J3D.SurfaceRefXMLHandler
-
Text data callback from parser.
- characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.J3D.model.file.FileSurfaceXML_J3D.SurfaceXMLHandler
-
Text data callback from parser.
- characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceGiftiXML_WM.SurfaceGifitXMLHandler
-
Text data callback from parser.
- characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.Interface.FileSurfaceRefXML_WM.SurfaceRefXMLHandler
-
Text data callback from parser.
- characters(char[], int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.TBI.MyXMLHandler
-
DOCUMENT ME!
- CHARACTERS - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
- CHARACTERS - Static variable in class gov.nih.mipav.model.algorithms.ContourPlot.SignedDistanceCharacters
-
Character set for instances of
ContourPlot.SignedDistanceCharacters. - charField - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog
-
DOCUMENT ME!
- charHeigth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
- charLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogShortcutEditor.ShortcutDialog
-
DOCUMENT ME!
- charls - Class in gov.nih.mipav.model.file
-
Ported from C++ to Java by William Gandler BSD 3-Clause License Copyright (c) 2007, Jan de Vaan and Victor Derks All rights reserved.
- charls() - Constructor for class gov.nih.mipav.model.file.charls
- charls(int) - Constructor for class gov.nih.mipav.model.file.charls
- charls_color_transformation(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_color_transformation
- CHARLS_COLOR_TRANSFORMATION_HP1 - Enum constant in enum gov.nih.mipav.model.file.charls.charls_color_transformation
- CHARLS_COLOR_TRANSFORMATION_HP2 - Enum constant in enum gov.nih.mipav.model.file.charls.charls_color_transformation
- CHARLS_COLOR_TRANSFORMATION_HP3 - Enum constant in enum gov.nih.mipav.model.file.charls.charls_color_transformation
- CHARLS_COLOR_TRANSFORMATION_NONE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_color_transformation
- charls_compressed_data_format(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_compressed_data_format
- CHARLS_COMPRESSED_DATA_FORMAT_ABBREVIATED_IMAGE_DATA - Enum constant in enum gov.nih.mipav.model.file.charls.charls_compressed_data_format
- CHARLS_COMPRESSED_DATA_FORMAT_ABBREVIATED_TABLE_SPECIFICATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_compressed_data_format
- CHARLS_COMPRESSED_DATA_FORMAT_INTERCHANGE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_compressed_data_format
- CHARLS_COMPRESSED_DATA_FORMAT_UNKNOWN - Enum constant in enum gov.nih.mipav.model.file.charls.charls_compressed_data_format
- charls_constants(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_constants
- charls_encoding_options(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_encoding_options
- CHARLS_ENCODING_OPTIONS_EVEN_DESTINATION_SIZE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_encoding_options
- CHARLS_ENCODING_OPTIONS_INCLUDE_PC_PARAMETERS_JAI - Enum constant in enum gov.nih.mipav.model.file.charls.charls_encoding_options
- CHARLS_ENCODING_OPTIONS_INCLUDE_VERSION_NUMBER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_encoding_options
- CHARLS_ENCODING_OPTIONS_NONE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_encoding_options
- charls_frame_info() - Constructor for class gov.nih.mipav.model.file.charls.charls_frame_info
- charls_frame_info(long, long, int, int) - Constructor for class gov.nih.mipav.model.file.charls.charls_frame_info
- charls_get_version_number(int[], int[], int[]) - Method in class gov.nih.mipav.model.file.charls
- charls_get_version_number_all() - Method in class gov.nih.mipav.model.file.charls
- charls_get_version_string() - Method in class gov.nih.mipav.model.file.charls
- charls_get_version_string_test() - Method in class gov.nih.mipav.model.file.charls
- charls_interleave_mode(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_interleave_mode
- CHARLS_INTERLEAVE_MODE_LINE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_interleave_mode
- CHARLS_INTERLEAVE_MODE_NONE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_interleave_mode
- CHARLS_INTERLEAVE_MODE_SAMPLE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_interleave_mode
- charls_jpegls_decoder() - Constructor for class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder(charls.span8, boolean) - Constructor for class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder_decode_to_buffer(byte[], int, int) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder_decode_to_buffer(charls.charls_jpegls_decoder, byte[], int, int) - Method in class gov.nih.mipav.model.file.charls
- charls_jpegls_decoder_decode_to_buffer(charls.charls_jpegls_decoder, short[], int, int) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder_get_destination_size(charls.charls_jpegls_decoder, int, int[]) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder_get_frame_info(charls.charls_jpegls_decoder, charls.charls_frame_info) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder_read_header(charls.charls_jpegls_decoder) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_decoder_read_spiff_header(charls.charls_jpegls_decoder, charls.charls_spiff_header, boolean[]) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- charls_jpegls_encoder() - Constructor for class gov.nih.mipav.model.file.charls.charls_jpegls_encoder
- charls_jpegls_encoder_encode_from_buffer(charls.charls_jpegls_encoder, byte[], int, int) - Method in class gov.nih.mipav.model.file.charls
- charls_jpegls_encoder_encode_from_buffer(charls.charls_jpegls_encoder, short[], int, int) - Method in class gov.nih.mipav.model.file.charls
- charls_jpegls_errc(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_ABBREVIATED_FORMAT_AND_SPIFF_HEADER_MISMATCH - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_CALLBACK_FAILED - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_COLOR_TRANSFORM_NOT_SUPPORTED - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_DEFINE_NUMBER_OF_LINES_MARKER_NOT_FOUND - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_DESTINATION_TOO_SMALL - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_DUPLICATE_COMPONENT_ID_IN_SOF_SEGMENT - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_DUPLICATE_START_OF_FRAME_MARKER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_DUPLICATE_START_OF_IMAGE_MARKER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_ENCODING_NOT_SUPPORTED - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_END_OF_IMAGE_MARKER_NOT_FOUND - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_BITS_PER_SAMPLE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_COLOR_TRANSFORMATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_COMPONENT_COUNT - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_ENCODING_OPTIONS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_HEIGHT - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_INTERLEAVE_MODE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_JPEGLS_PC_PARAMETERS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_NEAR_LOSSLESS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_SIZE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_STRIDE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_ARGUMENT_WIDTH - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_DATA - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_JPEGLS_PRESET_PARAMETER_TYPE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_MARKER_SEGMENT_SIZE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_OPERATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_BITS_PER_SAMPLE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_COLOR_TRANSFORMATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_COMPONENT_COUNT - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_HEIGHT - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_INTERLEAVE_MODE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_JPEGLS_PRESET_PARAMETERS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_MAPPING_TABLE_CONTINUATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_MAPPING_TABLE_ID - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_NEAR_LOSSLESS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_PARAMETER_WIDTH - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_INVALID_SPIFF_HEADER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_JPEG_MARKER_START_BYTE_NOT_FOUND - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_JPEGLS_PRESET_EXTENDED_PARAMETER_TYPE_NOT_SUPPORTED - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_MISSING_END_OF_SPIFF_DIRECTORY - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_NEED_MORE_DATA - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_NOT_ENOUGH_MEMORY - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_PARAMETER_VALUE_NOT_SUPPORTED - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_RESTART_MARKER_NOT_FOUND - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_START_OF_IMAGE_MARKER_NOT_FOUND - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_SUCCESS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_UNEXPECTED_DEFINE_NUMBER_OF_LINES_MARKER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_UNEXPECTED_END_OF_IMAGE_MARKER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_UNEXPECTED_RESTART_MARKER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_UNEXPECTED_START_OF_SCAN_MARKER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_UNKNOWN_COMPONENT_ID - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- CHARLS_JPEGLS_ERRC_UNKNOWN_JPEG_MARKER_FOUND - Enum constant in enum gov.nih.mipav.model.file.charls.charls_jpegls_errc
- charls_jpegls_pc_parameters() - Constructor for class gov.nih.mipav.model.file.charls.charls_jpegls_pc_parameters
- charls_jpegls_pc_parameters(int, int, int, int, int) - Constructor for class gov.nih.mipav.model.file.charls.charls_jpegls_pc_parameters
- charls_mapping_table_info(int, int, long) - Constructor for class gov.nih.mipav.model.file.charls.charls_mapping_table_info
- CHARLS_MAPPING_TABLE_MISSING - Enum constant in enum gov.nih.mipav.model.file.charls.charls_constants
- CHARLS_RETURN_TYPE_SUCCESS - Variable in class gov.nih.mipav.model.file.charls
- charls_spiff_color_space(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_BI_LEVEL_BLACK - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_BI_LEVEL_WHITE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_CIE_LAB - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_CMY - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_CMYK - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_GRAYSCALE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_NONE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_PHOTO_YCC - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_RGB - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_YCBCR_ITU_BT_601_1_RGB - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_YCBCR_ITU_BT_601_1_VIDEO - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_YCBCR_ITU_BT_709_VIDEO - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- CHARLS_SPIFF_COLOR_SPACE_YCCK - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_color_space
- charls_spiff_compression_type(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_JBIG - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_JPEG - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_JPEG_LS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_MODIFIED_HUFFMAN - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_MODIFIED_MODIFIED_READ - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_MODIFIED_READ - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- CHARLS_SPIFF_COMPRESSION_TYPE_UNCOMPRESSED - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_compression_type
- charls_spiff_entry_tag(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_COMPONENT_REGISTRATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_CONTACT_INFORMATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_COPYRIGHT_INFORMATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_CREATOR_IDENTIFICATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_IMAGE_DESCRIPTION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_IMAGE_ORIENTATION - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_IMAGE_TITLE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_PROTECTION_INDICATOR - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_SCAN_INDEX - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_SET_REFERENCE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_THUMBNAIL - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_TILE_INDEX - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_TIME_STAMP - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_TRANSFER_CHARACTERISTICS - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- CHARLS_SPIFF_ENTRY_TAG_VERSION_IDENTIFIER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_entry_tag
- charls_spiff_header() - Constructor for class gov.nih.mipav.model.file.charls.charls_spiff_header
- charls_spiff_header(charls.spiff_profile_id, int, long, long, charls.spiff_color_space, int, charls.spiff_compression_type, charls.spiff_resolution_units, long, long) - Constructor for class gov.nih.mipav.model.file.charls.charls_spiff_header
- charls_spiff_profile_id(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_spiff_profile_id
- CHARLS_SPIFF_PROFILE_ID_BI_LEVEL_FACSIMILE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_profile_id
- CHARLS_SPIFF_PROFILE_ID_CONTINUOUS_TONE_BASE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_profile_id
- CHARLS_SPIFF_PROFILE_ID_CONTINUOUS_TONE_FACSIMILE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_profile_id
- CHARLS_SPIFF_PROFILE_ID_CONTINUOUS_TONE_PROGRESSIVE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_profile_id
- CHARLS_SPIFF_PROFILE_ID_NONE - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_profile_id
- charls_spiff_resolution_units(int) - Constructor for enum gov.nih.mipav.model.file.charls.charls_spiff_resolution_units
- CHARLS_SPIFF_RESOLUTION_UNITS_ASPECT_RATIO - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_resolution_units
- CHARLS_SPIFF_RESOLUTION_UNITS_DOTS_PER_CENTIMETER - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_resolution_units
- CHARLS_SPIFF_RESOLUTION_UNITS_DOTS_PER_INCH - Enum constant in enum gov.nih.mipav.model.file.charls.charls_spiff_resolution_units
- charls_validate_spiff_header(charls.charls_spiff_header, charls.charls_frame_info) - Method in class gov.nih.mipav.model.file.charls
- CHARLS_VERSION_MAJOR - Variable in class gov.nih.mipav.model.file.charls
- CHARLS_VERSION_MINOR - Variable in class gov.nih.mipav.model.file.charls
- CHARLS_VERSION_PATCH - Variable in class gov.nih.mipav.model.file.charls
- charls.charls_color_transformation - Enum in gov.nih.mipav.model.file
- charls.charls_compressed_data_format - Enum in gov.nih.mipav.model.file
- charls.charls_constants - Enum in gov.nih.mipav.model.file
- charls.charls_encoding_options - Enum in gov.nih.mipav.model.file
- charls.charls_frame_info - Class in gov.nih.mipav.model.file
- charls.charls_interleave_mode - Enum in gov.nih.mipav.model.file
- charls.charls_jpegls_decoder - Class in gov.nih.mipav.model.file
- charls.charls_jpegls_encoder - Class in gov.nih.mipav.model.file
- charls.charls_jpegls_errc - Enum in gov.nih.mipav.model.file
- charls.charls_jpegls_pc_parameters - Class in gov.nih.mipav.model.file
- charls.charls_mapping_table_info - Class in gov.nih.mipav.model.file
- charls.charls_spiff_color_space - Enum in gov.nih.mipav.model.file
- charls.charls_spiff_compression_type - Enum in gov.nih.mipav.model.file
- charls.charls_spiff_entry_tag - Enum in gov.nih.mipav.model.file
- charls.charls_spiff_header - Class in gov.nih.mipav.model.file
- charls.charls_spiff_profile_id - Enum in gov.nih.mipav.model.file
- charls.charls_spiff_resolution_units - Enum in gov.nih.mipav.model.file
- charls.coding_parameters - Class in gov.nih.mipav.model.file
- charls.color_transformation - Enum in gov.nih.mipav.model.file
- charls.compressed_data_format - Enum in gov.nih.mipav.model.file
- charls.decoder_state - Enum in gov.nih.mipav.model.file
- charls.default_traits - Class in gov.nih.mipav.model.file
- charls.encoder_state - Enum in gov.nih.mipav.model.file
- charls.encoding_options - Enum in gov.nih.mipav.model.file
- charls.golomb_code_match - Class in gov.nih.mipav.model.file
- charls.golomb_code_match_table - Class in gov.nih.mipav.model.file
- charls.interleave_mode - Enum in gov.nih.mipav.model.file
- charls.jpeg_stream_reader - Class in gov.nih.mipav.model.file
- charls.jpeg_stream_reader.component_info - Class in gov.nih.mipav.model.file
- charls.jpeg_stream_reader.mapping_table_entry - Class in gov.nih.mipav.model.file
- charls.jpeg_stream_writer - Class in gov.nih.mipav.model.file
- charls.jpeg_test_stream_writer - Class in gov.nih.mipav.model.file
- charls.jpegls_errc - Enum in gov.nih.mipav.model.file
- charls.jpegls_preset_parameters_type - Enum in gov.nih.mipav.model.file
- charls.lossless_traits12 - Class in gov.nih.mipav.model.file
- charls.lossless_traits16 - Class in gov.nih.mipav.model.file
- charls.lossless_traits16pair - Class in gov.nih.mipav.model.file
- charls.lossless_traits16quad - Class in gov.nih.mipav.model.file
- charls.lossless_traits16triplet - Class in gov.nih.mipav.model.file
- charls.lossless_traits32 - Class in gov.nih.mipav.model.file
- charls.lossless_traits32pair - Class in gov.nih.mipav.model.file
- charls.lossless_traits32quad - Class in gov.nih.mipav.model.file
- charls.lossless_traits32triplet - Class in gov.nih.mipav.model.file
- charls.lossless_traits8 - Class in gov.nih.mipav.model.file
- charls.lossless_traits8pair - Class in gov.nih.mipav.model.file
- charls.lossless_traits8quad - Class in gov.nih.mipav.model.file
- charls.lossless_traits8triplet - Class in gov.nih.mipav.model.file
- charls.pair<T> - Class in gov.nih.mipav.model.file
- charls.Pair2var<T,
U> - Class in gov.nih.mipav.model.file - charls.PixelType - Enum in gov.nih.mipav.model.file
- charls.portable_anymap_file - Class in gov.nih.mipav.model.file
- charls.quad<T> - Class in gov.nih.mipav.model.file
- charls.regular_mode_context - Class in gov.nih.mipav.model.file
- charls.run_mode_context - Class in gov.nih.mipav.model.file
- charls.SampleType - Enum in gov.nih.mipav.model.file
- charls.scan_codec - Class in gov.nih.mipav.model.file
- charls.scan_decoder - Class in gov.nih.mipav.model.file
- charls.scan_decoder_impl - Class in gov.nih.mipav.model.file
- charls.scan_decoder_tester - Class in gov.nih.mipav.model.file
- charls.scan_encoder - Class in gov.nih.mipav.model.file
- charls.scan_encoder_impl - Class in gov.nih.mipav.model.file
- charls.scan_encoder_tester - Class in gov.nih.mipav.model.file
- charls.span16 - Class in gov.nih.mipav.model.file
- charls.span32 - Class in gov.nih.mipav.model.file
- charls.span8 - Class in gov.nih.mipav.model.file
- charls.spiff_color_space - Enum in gov.nih.mipav.model.file
- charls.spiff_compression_type - Enum in gov.nih.mipav.model.file
- charls.spiff_entry_tag - Enum in gov.nih.mipav.model.file
- charls.spiff_profile_id - Enum in gov.nih.mipav.model.file
- charls.spiff_resolution_units - Enum in gov.nih.mipav.model.file
- charls.state - Enum in gov.nih.mipav.model.file
- charls.thresholds - Class in gov.nih.mipav.model.file
- charls.traits - Class in gov.nih.mipav.model.file
- charls.transform_hp1_16 - Class in gov.nih.mipav.model.file
- charls.transform_hp1_16.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp1_32 - Class in gov.nih.mipav.model.file
- charls.transform_hp1_32.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp1_8 - Class in gov.nih.mipav.model.file
- charls.transform_hp1_8.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp2_16 - Class in gov.nih.mipav.model.file
- charls.transform_hp2_16.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp2_32 - Class in gov.nih.mipav.model.file
- charls.transform_hp2_32.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp2_8 - Class in gov.nih.mipav.model.file
- charls.transform_hp2_8.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp3_16 - Class in gov.nih.mipav.model.file
- charls.transform_hp3_16.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp3_32 - Class in gov.nih.mipav.model.file
- charls.transform_hp3_32.inverse - Class in gov.nih.mipav.model.file
- charls.transform_hp3_8 - Class in gov.nih.mipav.model.file
- charls.transform_hp3_8.inverse - Class in gov.nih.mipav.model.file
- charls.triplet<T> - Class in gov.nih.mipav.model.file
- Charsets() - Constructor for class gov.nih.mipav.model.file.MetadataExtractor.Charsets
- chartHeight - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- chartWidth - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- chartXend - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- chartXstart - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- chartYend - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- chartYstart - Variable in class gov.nih.mipav.view.LineMeter
-
DOCUMENT ME!
- charWidth - Variable in class gov.nih.mipav.model.algorithms.ContourPlot.CharacterAtlas
- chbevl(double, double[], int) - Method in class gov.nih.mipav.model.algorithms.Cephes
- CHBEVL - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- chckbxfine - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chckbxForwardsbackwards - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chckbxLeftright - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chckbxRotationRX - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chckbxRotationRy - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chckbxRotationRz - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chckbxUpdown - Variable in class gov.nih.mipav.view.renderer.WildMagic.Interface.JPanel3DMouse_WM
- chder(double, int[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
-
DOCUMENT ME!
- chder(DoubleDouble, int[], DoubleDouble[], DoubleDouble[]) - Method in class gov.nih.mipav.model.algorithms.NLConstrainedEngineEP
-
DOCUMENT ME!
- chdtr(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- CHDTR - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- chdtrc(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- CHDTRC - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- chdtri(double, double) - Method in class gov.nih.mipav.model.algorithms.Cephes
- CHDTRI - Static variable in class gov.nih.mipav.model.algorithms.Cephes
- chebmo - Variable in class gov.nih.mipav.model.algorithms.Integration2
-
array of dimension (maxp1,25) containing the chebyshev moments
- chebmo - Variable in class gov.nih.mipav.model.algorithms.Integration2EP
-
array of dimension (maxp1,25) containing the chebyshev moments
- CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.Lmmin
- CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.LsqFit
- CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.NESolve
- CHEBYQUAD - Variable in class gov.nih.mipav.model.algorithms.NLConstrainedEngine
- ChebyschevApproximation(float, float, int, jxlatte.FloatUnaryOperator) - Constructor for class gov.nih.mipav.model.file.jxlatte.ChebyschevApproximation
- chebyshev(double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Confmap
- Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
- Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
- Chebyshev(int, double) - Method in class gov.nih.mipav.model.algorithms.HartleyTransform2
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
- CHEBYSHEV_TYPE_I - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.DiscreteCosineTransform
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.DiscreteSineTransform
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilter
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.filters.AlgorithmFrequencyFilterColor
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.model.algorithms.HartleyTransform2
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogFFT
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
- CHEBYSHEV_TYPE_II - Static variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
- chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
- chebyshevIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteCosineTransform
- chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogDiscreteSineTransform
- chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFFT
- chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogFrequencyFilter
- chebyshevIIFilter - Variable in class gov.nih.mipav.view.dialogs.JDialogHartleyTransform
- chebzeros(int) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- CHECK - Static variable in class gov.nih.mipav.view.dialogs.JDialogInstallPlugin.ClassSelectorPanel
- CHECK(double[], double[], int, int, int) - Method in class gov.nih.mipav.model.algorithms.DoublyConnectedSC
- check_1() - Method in class gov.nih.mipav.model.algorithms.curfit
- check_ans(CVODES.NVector, double, CVODES.NVector) - Method in class gov.nih.mipav.model.algorithms.CVODES
- check_argument(boolean) - Method in class gov.nih.mipav.model.file.charls
- check_argument(boolean, String) - Method in class gov.nih.mipav.model.file.charls
- check_argument(charls.span16) - Method in class gov.nih.mipav.model.file.charls
- check_argument(charls.span8) - Method in class gov.nih.mipav.model.file.charls
- check_argument_range(int, int, int) - Method in class gov.nih.mipav.model.file.charls
- check_argument_range(int, int, int, String) - Method in class gov.nih.mipav.model.file.charls
- check_coding_parameters() - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- check_coefficients(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- check_coefficients_biorthogonal(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- check_coefficients_orthogonal(PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- check_compartmentalized() - Method in class gov.nih.mipav.model.structures.Voro.container_periodic_base
-
Checks that the particles within each block lie within that block's bounds.
- check_conformal() - Method in class gov.nih.mipav.model.algorithms.Confmap.CETM
- check_divergence(NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- check_duplicate(int, double, double, double, int, double[]) - Method in class gov.nih.mipav.model.structures.Voro
- check_duplicates() - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
This routine checks for any two vertices that are connected by more than one edge.
- check_edges(JCVoronoi.jcv_graphedge, int, JCVoronoi.jcv_point[], JCVoronoi.jcv_site[]) - Method in class gov.nih.mipav.model.structures.JCVoronoi
- check_facets() - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_neighbor
-
This routine checks to make sure the neighbor information of each face is consistent.
- check_gradients - Variable in class gov.nih.mipav.model.algorithms.CeresSolver.SolverOptions
- check_graphedge_eq(JCVoronoi.jcv_graphedge, JCVoronoi.jcv_point, JCVoronoi.jcv_point) - Method in class gov.nih.mipav.model.structures.JCVoronoi
- check_interleave_mode(charls.interleave_mode, int) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- check_interleave_mode(charls.interleave_mode, String) - Method in class gov.nih.mipav.model.file.charls
- check_interleave_mode_against_component_count() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_encoder
- check_level(int, int, int) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- check_mapping_table_index(int) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- check_memory_for_copy(Voro.voronoicell_neighbor, Voro.voronoicell_base) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
- check_memory_for_copy(Voro.voronoicell, Voro.voronoicell_base) - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
- check_minimal_segment_size(int) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- check_momentum_setting(double[], NonnegativeMatrixFactorization.opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- check_operation(boolean) - Method in class gov.nih.mipav.model.file.charls
- check_output(byte[], int, byte[], int, charls.charls_jpegls_decoder, int, int) - Method in class gov.nih.mipav.model.file.charls
- check_output(byte[], int, byte[], charls.charls_jpegls_decoder, int, int) - Method in class gov.nih.mipav.model.file.charls
- check_perm(String, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
- check_point_eq(JCVoronoi.jcv_point, JCVoronoi.jcv_point) - Method in class gov.nih.mipav.model.structures.JCVoronoi
- check_pts_equal(double, double, double, double) - Method in class gov.nih.mipav.model.structures.Delaunator
- check_reconstruction(PyWavelets.MODE, PyWavelets.DiscreteWavelet) - Method in class gov.nih.mipav.model.algorithms.filters.PyWavelets
- check_relations() - Method in class gov.nih.mipav.model.structures.Voro.voronoicell_base
-
Checks that the relational table of the Voronoi cell is accurate, and prints out any errors.
- check_repfnz(int, int, int, int[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
- check_segment_size(int) - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- check_state_can_write() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_encoder
- check_state_completed() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- check_state_header_read() - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- check_stop_condition(int[], String[], boolean[], NonnegativeMatrixFactorization.info, int, NonnegativeMatrixFactorization.info, NonnegativeMatrixFactorization.opt, NonnegativeMatrixFactorization.stop_opt) - Method in class gov.nih.mipav.model.algorithms.NonnegativeMatrixFactorization
- check_stride_and_destination_size(int, int) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_decoder
- check_stride_and_source_size(int, int, int) - Method in class gov.nih.mipav.model.file.charls.charls_jpegls_encoder
- check_svd(double[], double[], double[], double[]) - Method in class gov.nih.mipav.model.algorithms.Covdet
- check_triangle_inequality() - Method in class gov.nih.mipav.model.algorithms.Confmap.CETM
- check_width() - Method in class gov.nih.mipav.model.file.charls.jpeg_stream_reader
- CHECK1(double, int, int[], int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
- CHECK2(double, int, int[], int[], int[], boolean[]) - Method in class gov.nih.mipav.model.structures.jama.SuperLU
- checkAllButton - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM
-
buttons for toolbar *
- CheckAllEvaluationCombinations(CeresSolverTest.ExpectedEvaluation) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest.EvaluatorTest
- checkAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePrivateTags
-
Selects all the paths in the tree.
- checkAllPaths() - Method in class gov.nih.mipav.view.JPanelAnonymizePublicTags
- checkAutosave - Variable in class gov.nih.mipav.view.dialogs.JDialogMultiPaint
- checkBlurring() - Method in class gov.nih.mipav.view.dialogs.JDialogLocalNormalization
-
check the variables of the unsharping-mask panel as they are translated from dialog inputs (ie.,
JTextFields) to more usable, native types. - checkbox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.RowData
- checkBox - Variable in class gov.nih.mipav.view.CheckTreeManager.CheckTreeCellRenderer
- checkBox - Variable in class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
- checkBox - Variable in class gov.nih.mipav.view.ViewJFrameImage.DicomQueryListener
- checkBox - Variable in class gov.nih.mipav.view.ViewUserInterface.DicomQueryListener
- checkBox25D - Variable in class gov.nih.mipav.view.dialogs.JDialogCoherenceEnhancingDiffusion
-
DOCUMENT ME!
- checkBox25D - Variable in class gov.nih.mipav.view.dialogs.JDialogRegularizedIsotropicDiffusion
-
DOCUMENT ME!
- checkBoxArrList - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes
-
This is the ArrayList of JCheckBoxes
- checkboxBoundingBox - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Whether to display bounding box around VOI
- checkboxDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogAGVF
-
DOCUMENT ME!
- checkboxDisplay - Variable in class gov.nih.mipav.view.dialogs.JDialogGVF
-
DOCUMENT ME!
- CheckBoxEditor() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxEditor
- checkboxEnd - Variable in class gov.nih.mipav.view.dialogs.JDialogRawIO
-
DOCUMENT ME!
- checkBoxes - Variable in class gov.nih.mipav.view.dialogs.JDialogTreT2.DialogTwo
- checkBoxHardSDWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
- checkboxIncludeForProcessing - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Whether to include the selected VOI for statistics processing
- checkboxLabels - Variable in class gov.nih.mipav.view.JPanelChecklist
-
must be same size as listLength.
- checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
DOCUMENT ME!
- checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkboxList - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
DOCUMENT ME!
- checkboxList - Variable in class gov.nih.mipav.view.JPanelChecklist
-
DOCUMENT ME!
- checkboxNames - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes
-
This is a list of the checkbox names that is used for validation of user input to make sure there are no duplicates
- checkboxOpacity - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Whether to display VOI with shading
- checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeImage
-
DOCUMENT ME!
- checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
DOCUMENT ME!
- checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkboxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
DOCUMENT ME!
- checkboxPanel - Variable in class gov.nih.mipav.view.JPanelChecklist
-
DOCUMENT ME!
- checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory
-
DOCUMENT ME!
- checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
Panel holding statistics options.
- checkBoxPanel - Variable in class gov.nih.mipav.view.dialogs.JPanelPixelExclusionSelector
-
A reference to the JDialogVOIStatistic or JDialogVOIStats check box panel.
- CheckBoxRenderer() - Constructor for class gov.nih.mipav.view.dialogs.JDialogFileInfoDICOM.CheckBoxRenderer
- checkboxSaveStats - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Whether to save statistics to a file
- checkBoxShowLight - Variable in class gov.nih.mipav.view.renderer.J3D.JPanelLights
-
Check box to show the light bulb or not.
- checkboxVOIName - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStats
-
Whether to display VOI name
- checkBoxWienerSDWeighting - Variable in class gov.nih.mipav.view.dialogs.JDialogBM3D
- checkBSTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
check border size of the frame, range (0,10).
- checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
DOCUMENT ME!
- checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
DOCUMENT ME!
- checkButton - Variable in class gov.nih.mipav.view.JPanelChecklist
-
DOCUMENT ME!
- checkCalendar(Calendar) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
To check if the date is a valid date in the calendar.
- checkChildren - Variable in class gov.nih.mipav.view.dialogs.JDialogAnonymizeDirectory.AnonymizeDicomDirectories
-
DOCUMENT ME!
- checkDate(int, int, int, boolean) - Method in class gov.nih.mipav.view.ViewJFrameDICOMQuery
-
Checks the date to be sure the user didn't enter the start after the end.
- checkDimensions - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages
-
DOCUMENT ME!
- CheckDimensions(CeresSolver.ProbeResults, Vector<Integer>, Vector<Integer>, int, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- CHECKED_EVEN - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checked_mul(int, int) - Method in class gov.nih.mipav.model.file.charls
- checked_mul(long, long) - Method in class gov.nih.mipav.model.file.charls
- CHECKED_ODD - Static variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkedFileTypes - Variable in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes
-
This a list is the list of checked check boxes that is populated when user hits apply
- checkEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
-
From the target 2D slice, compare it with end slices based atlas.
- checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
-
From the target 2D slice, compare it with end slices based atlas.
- checkEndSlices() - Method in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
From the target 2D slice, compare it with end slices based atlas.
- checkEOL() - Method in class gov.nih.mipav.model.file.FileSVS.ModHuffmanInputStream
- checkEOL() - Method in class gov.nih.mipav.model.file.FileTiff.ModHuffmanInputStream
- checkerboardApplied - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- checkerBoardButton - Variable in class gov.nih.mipav.view.ViewToolBarBuilder
-
The button used to enable checker board display of two images.
- checkerboardTypesCB - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
-
DOCUMENT ME!
- checkerboardTypesLabel - Variable in class gov.nih.mipav.view.dialogs.JDialogCheckerBoard
- checkerDialog - Variable in class gov.nih.mipav.view.ViewJComponentEditImage
-
Dialog used to set properties of the checkerboard display:(Image A displayed in alternating squares with Image B.
- CheckEvaluation(CeresSolver.CostFunction, boolean, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- checkEvenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
DOCUMENT ME!
- checkEvenButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkFields() - Method in class gov.nih.mipav.view.JPanelEdit
-
Abstract method notifying the owner if the incorporated fields need to be re-entered.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditAxisOrientation
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditBoolean
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditChar
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditDate
-
Because DICOM requires 4-digit years, we must check the year field.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditDefault
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditImageOrientation
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditModality
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditOrientation
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditRace
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditSetOrParam
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditSex
-
method does nothing in this class.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditTime
-
If owner were to check, this panel always checks out fine.
- checkFields() - Method in class gov.nih.mipav.view.JPanelEditValueType
-
There is nothing to check in this Panel.
- checkFields() - Method in class gov.nih.mipav.view.JPanelFileSelection
-
DOCUMENT ME!
- checkForActiveVOIs() - Method in class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface
- checkForActiveVOIs() - Method in class gov.nih.mipav.view.ViewJFrameImage
- CheckForDuplicates(Vector<double[]>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
- CheckForPairDuplicates(Vector<CeresSolver.Pair<double[], double[]>>) - Method in class gov.nih.mipav.model.algorithms.CeresSolver2.CovarianceImpl
- checkFrontEdge(int, int) - Method in class gov.nih.mipav.view.renderer.WildMagic.BallPivoting.AdvancingFront
- checkGSTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
checks the settings of grid size controls.
- checkHeapMaxAgainstPreferences() - Method in class gov.nih.mipav.view.ViewUserInterface
-
Test for VM memory sizes being the same as last run in preferences: displays a user-warning that the preferences & VM config files disagree and presents the JDialogMemoryAllocation dialog with "use preference" buttons to quicken the matching process.
- checkIfNeedCalibration() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorPoller
- checkIfSpaceNavNeedsCalibration() - Static method in class gov.nih.mipav.view.input.spacenav.SpaceNavigatorController
- checkIfSpaceNavNeedsCalibration() - Static method in class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
- checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogExtractObject
-
Checks the dimensionality of the new image vs. the original source image.
- checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETBleedThrough
-
Checks the color and dimensionality of the new image vs. the original source image.
- checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
-
Checks the color and dimensionality of the new image vs. the original source image.
- checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogIndependentComponents
-
Checks the color and dimensionality of the new image vs. the original source image.
- checkImage(ModelImage) - Method in class gov.nih.mipav.view.dialogs.JDialogMSFuzzyCMeans
-
Checks the color and dimensionality of the new image vs. the original source image.
- checkImage(ModelImage, ModelImage) - Static method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeImage
-
Checks that the two input images match extents, units of measure and resolutions.
- checkImages - Variable in class gov.nih.mipav.view.dialogs.JDialogFilterChoice
-
DOCUMENT ME!
- checkIncrementTextField() - Method in class gov.nih.mipav.view.dialogs.JDialogLightBox
-
check border size of the frame, range (0,10).
- checkInput(double[][][], double[][][]) - Method in class gov.nih.mipav.model.algorithms.filters.PseudoPolarFourierTransform
- CheckIntPairToLong(int, int, String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- checkList - Variable in class gov.nih.mipav.view.dialogs.JDialogVOIStatistics
-
boolean array mirroring checkbox panel's selection.
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNetherland
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsNIH
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogFemurTraceSectionsSeparateNetherland
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNetherland
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogPatellaTraceSectionsNIH
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassification
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMClassificationExt
- checkList - Static variable in class gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogAAMplusSVM
-
VOI properties check list.
- checkListExtract - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
DOCUMENT ME!
- checkListInsert - Variable in class gov.nih.mipav.view.dialogs.JDialogInsertMissingSlices
-
Array of length totalSlices, false where slice is already present, true where slice must be inserted.
- checkListRemove - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkListRemove - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveTSlices
-
DOCUMENT ME!
- CheckLongToIntPair(String, boolean[]) - Method in class gov.nih.mipav.model.algorithms.CeresSolverTest
- checkMagicNumber() - Method in class gov.nih.mipav.model.file.FileGESigna5X
-
DOCUMENT ME!
- CheckManifold() - Method in class gov.nih.mipav.view.renderer.WildMagic.brainflattenerview_WM.MjCorticalMesh_WM
- checkMaxSlice(FileDicomTagTable, int, TreeSet<Integer>) - Method in class gov.nih.mipav.model.file.FileDicom
-
Helper method for enhanced dicom which finds the maximum slice number in the dataset.
- checkMeshPoints() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeRayCast
-
Check that the currently loaded proxy geometry is the default cube, if it is not reload it onto the GPU.
- checkMinimum(AlgorithmConstrainedELSUNCOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedELSUNCOAR3D
-
Check if the given minimum is within the translation and rotation bounds.
- checkMinimum(AlgorithmConstrainedOAR3D.MatrixListItem) - Method in class gov.nih.mipav.model.algorithms.registration.AlgorithmConstrainedOAR3D
-
Check if the given minimum is within the translation and rotation bounds.
- checkName(String, VOI) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- checkOddButton - Variable in class gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
-
DOCUMENT ME!
- checkOddButton - Variable in class gov.nih.mipav.view.dialogs.JDialogRemoveSlices
-
DOCUMENT ME!
- checkOnEdge(ModelTriangleMesh, Point3f, int[], Vector3f, TexCoord3f, Color4f) - Method in class gov.nih.mipav.view.renderer.J3D.surfaceview.Geodesic
-
Given a point which is known to be inside a triangle, and that triangle, this function determines which edge, if any, that point falls on.
- checkOnEdge(TriMesh, Vector3f, int[], Vector3f, Vector3f, ColorRGBA) - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.Geodesic_WM
-
Given a point which is known to be inside a triangle, and that triangle, this function determines which edge, if any, that point falls on.
- checkOnFrameClose - Variable in class gov.nih.mipav.view.dialogs.JDialogMipavOptions
-
DOCUMENT ME!
- checkOptionInStr(String, String) - Method in class gov.nih.mipav.model.algorithms.libdt
- checkOrigins - Variable in class gov.nih.mipav.view.dialogs.JDialogMatchImages
-
DOCUMENT ME!
- CheckParams(METIS.ctrl_t) - Method in class gov.nih.mipav.model.structures.jama.METIS
- checkParentDir(String) - Static method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.LatticeModel
- checkParentDir(String) - Method in class gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.WormData
-
Creates the parent directory for the output images and data created by worm segmentation and untwisting:
- checkPixelProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VolumeShaderEffectMultiPassDynamic
- checkPixelProgram() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.VSEMD_MultipleImages
- checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.dialogs.JDialogVOIStats.VOITreePopup
-
DOCUMENT ME!
- checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalitySingleViewer.MousePopupListener
- checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJFrameMultimodalityViewer.MousePopupListener
- checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPlugin
-
Checks whether the popup should be called
- checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupPt
-
DOCUMENT ME!
- checkPopup(MouseEvent) - Method in class gov.nih.mipav.view.ViewJPopupVOI
-
DOCUMENT ME!
- checkPositiveIntegers(Vector<Double>) - Method in class gov.nih.mipav.model.algorithms.StochasticForests
- checkPrefDirCommand(String[], int) - Static method in class gov.nih.mipav.view.ViewUserInterface
-
If the preferences name command is about to be performed before an existing preferences directory command, this guarantees that the directory command will be executed first.
- checkPreference(String) - Method in class gov.nih.mipav.view.dialogs.JDialogEditUserDefinedFileTypes
-
This method does the check with the preferencesFileTypes array to determine if the checkbox should be checked initalially
- checkProgramText() - Method in class gov.nih.mipav.view.renderer.WildMagic.Render.MultiDimensionalTransfer.ClassificationWidgetEffect
- checkProximityToTransferFunction(float, float, boolean) - Method in class gov.nih.mipav.view.ViewJComponentHistoLUT
-
Check to see if the position of the mouse is close to one of the points in the LUT transfer function or the line drawn in between the points.
invalid reference