Package gov.nih.mipav.view

Class ViewJFrameHistoLUT

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Frame
javax.swing.JFrame
gov.nih.mipav.view.ViewJFrameBase
gov.nih.mipav.view.ViewJFrameHistoLUT
All Implemented Interfaces:
ViewImageUpdateInterface, ActionListener, ComponentListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants
public class ViewJFrameHistoLUT extends ViewJFrameBase implements WindowListener, ViewImageUpdateInterface
Deprecated.
This class produces a frame where the user can specify a specific LUT, the number of colors of the LUT or dynamically edit the LUT. The frame with histogram of the image data is displayed using the color map. All frames using the color map are dynamically updated with the new color map.
Version:
1.0
Author:
Matthew J. McAuliffe, Ph.D., Harman Singh, Lynne M. Pusanik
See Also:

  • Field Details

    • serialVersionUID

      private static final long serialVersionUID
      Deprecated.
      Use serialVersionUID for interoperability.
      See Also:

    • calcThresholdVolume

      private boolean calcThresholdVolume
      Deprecated.
      DOCUMENT ME!

    • colEMFrame

      private ViewJFrameColocalizationEM colEMFrame
      Deprecated.
      DOCUMENT ME!

    • colRegFrame

      private ViewJFrameColocalizationRegression colRegFrame
      Deprecated.
      DOCUMENT ME!

    • parentFrame

      private Frame parentFrame
      Deprecated.
      Parent frame

    • entireFlag

      private boolean entireFlag
      Deprecated.
      DOCUMENT ME!

    • lutPanel

      private ViewJPanelLUT lutPanel
      Deprecated.
      DOCUMENT ME!

    • regComponent

      private ViewJComponentRegistration regComponent
      Deprecated.
      DOCUMENT ME!

  • Constructor Details

    • ViewJFrameHistoLUT

      public ViewJFrameHistoLUT(ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT _LUTb, boolean _entireFlag)
      Deprecated.
      Makes a frame of the histogram and LUT.
      Parameters:
      _imageA - Model of imageA
      _imageB - Model of imageB
      _LUTa - Model of LUT for image A
      _LUTb - Model of LUT for image B
      _entireFlag - Flag indicating if histogram should be done on all of image.

    • ViewJFrameHistoLUT

      public ViewJFrameHistoLUT(Frame _parentFrame, ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT _LUTb, boolean _entireFlag)
      Deprecated.
      Makes a frame of the histogram and LUT.
      Parameters:
      _parentFrame - parent frame to hold the image.
      _imageA - Model of imageA
      _imageB - Model of imageB
      _LUTa - Model of LUT for image A
      _LUTb - Model of LUT for image B
      _entireFlag - Flag indicating if histogram should be done on all of image.

    • ViewJFrameHistoLUT

      public ViewJFrameHistoLUT(ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT _LUTb, boolean _entireFlag, boolean visible)
      Deprecated.
      Makes a frame of the histogram and LUT.
      Parameters:
      _imageA - Model of imageA
      _imageB - Model of imageB
      _LUTa - Model of LUT for image A
      _LUTb - Model of LUT for image B
      _entireFlag - Flag indicating if histogram should be done on all of image.
      visible - Frame visible or not.

    • ViewJFrameHistoLUT

      public ViewJFrameHistoLUT(ViewJFrameColocalizationRegression colRegFrame, ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT _LUTb, boolean _entireFlag)
      Deprecated.
      Makes a frame of the histogram and LUT.
      Parameters:
      colRegFrame - DOCUMENT ME!
      _imageA - Model of imageA
      _imageB - Model of imageB
      _LUTa - Model of LUT for image A
      _LUTb - Model of LUT for image B
      _entireFlag - Flag indicating if histogram should be done on all of image.

    • ViewJFrameHistoLUT

      public ViewJFrameHistoLUT(ViewJFrameColocalizationEM colEMFrame, ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT _LUTb, boolean _entireFlag)
      Deprecated.
      Makes a frame of the histogram and LUT.
      Parameters:
      colEMFrame - DOCUMENT ME!
      _imageA - Model of imageA
      _imageB - Model of imageB
      _LUTa - Model of LUT for image A
      _LUTb - Model of LUT for image B
      _entireFlag - Flag indicating if histogram should be done on all of image.

    • ViewJFrameHistoLUT

      public ViewJFrameHistoLUT(ViewJComponentRegistration _regComponent, ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT _LUTb, boolean _entireFlag)
      Deprecated.
      Makes a frame of the histogram and LUT.
      Parameters:
      _regComponent - component to which information is passed in manual registration
      _imageA - Model of imageA
      _imageB - Model of imageB
      _LUTa - Model of LUT for image A
      _LUTb - Model of LUT for image B
      _entireFlag - DOCUMENT ME!

  • Method Details

    • createSliderLabel

      public static final JLabel createSliderLabel(String title)
      Deprecated.
      Creates a label in the proper font and color.
      Parameters:
      title - The title of the label.
      Returns:
      The new label.
      See Also:

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Deprecated.
      Calls various methods depending on the action.
      Specified by:
      actionPerformed in interface ActionListener
      Specified by:
      actionPerformed in class ViewJFrameBase
      Parameters:
      event - event that triggered function

    • dispose

      public void dispose()
      Deprecated.
      Disposes of components and frame.
      Overrides:
      dispose in class Window

    • doCalcThresholdVolume

      public boolean doCalcThresholdVolume()
      Deprecated.
      Whether or not to calculate the threshold volume.
      Returns:
      boolean do calc?

    • enableThresholdingItems

      public void enableThresholdingItems(boolean flag)
      Deprecated.
      Enables the thresholding menu item(s).
      Parameters:
      flag - whether to enable the items

    • getComponentHistoLUT

      public ViewJComponentHLUTBase getComponentHistoLUT(int imageAorB)
      Deprecated.
      DOCUMENT ME!
      Parameters:
      imageAorB - DOCUMENT ME!
      Returns:
      DOCUMENT ME!

    • getControls

      public ViewControlsImage getControls()
      Deprecated.
      Gets the control widgets for the frame.
      Specified by:
      getControls in class ViewJFrameBase
      Returns:
      DOCUMENT ME!

    • getHistoLUTComponentA

      public ViewJComponentHLUTBase getHistoLUTComponentA()
      Deprecated.
      Get the histogram component for imageA.
      Returns:
      the imageA histogram component

    • getHistoLUTComponentB

      public ViewJComponentHLUTBase getHistoLUTComponentB()
      Deprecated.
      Get the histogram component for imageB.
      Returns:
      the imageB histogram component

    • getImageA

      public ModelImage getImageA()
      Deprecated.
      Accessor that returns the imageA.
      Specified by:
      getImageA in class ViewJFrameBase
      Returns:
      image

    • getImageB

      public ModelImage getImageB()
      Deprecated.
      Accessor that returns the imageB.
      Specified by:
      getImageB in class ViewJFrameBase
      Returns:
      imageB

    • getLowerThreshold

      public float getLowerThreshold()
      Deprecated.
      Returns the lower threshold value.
      Returns:
      float lower thresh

    • getLUT

      public ModelLUT getLUT()
      Deprecated.
      This method returns the current LUT.
      Returns:
      LUT for Image A if selected, otherwise for Image B

    • getLUTComponentA

      public final ViewJComponentLUT getLUTComponentA()
      Deprecated.
      Get the imageA LUT.
      Returns:
      the imageA LUT component

    • getLUTComponentB

      public final ViewJComponentLUT getLUTComponentB()
      Deprecated.
      Get the imageB LUT.
      Returns:
      the imageB LUT component

    • getLUTRecorder

      public JDialogRecordLUT getLUTRecorder()
      Deprecated.
      Get the JDialogRecordLUT reference from ViewJPanelLUT.
      Returns:
      JDialogRecordLUT

    • getTransferLine

      public TransferFunction getTransferLine()
      Deprecated.
      This method is used to obtain the VOIBase Single Transfer Line from ViewJFrameComponentHistoLut.
      Returns:
      LUTb.getTransferFunction() - VOIBase of Single Transfer Line for Image B

    • getUpperThreshold

      public float getUpperThreshold()
      Deprecated.
      Returns the upper threshold value.
      Returns:
      float upper thresh

    • getWholeImageFlag

      public boolean getWholeImageFlag()
      Deprecated.
      Returns whether the whole image is being examined or just the VOI region.
      Returns:
      whether the whole image is being examined or just the VOI region

    • isThresholding

      public boolean isThresholding()
      Deprecated.
      Returns true if comphist A or B is in dual threshold inverse mode (for JDialogConvertType input ranges).
      Returns:
      boolean is dual threshold inversing

    • notifyOfUpdate

      public void notifyOfUpdate(ModelLUT LUT, int imageAorB)
      Deprecated.
      Enable button to indicate image has changed and the histogram should be recalculated.
      Parameters:
      LUT - new Lookup table
      imageAorB - indicates which histogram needs to be recalculated

    • removeControls

      public void removeControls()
      Deprecated.
      Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.Abstract and must be extended.
      Specified by:
      removeControls in class ViewJFrameBase

    • removeHistoLUTb

      public void removeHistoLUTb()
      Deprecated.
      Removes the tabbed pane for the histogram of image B.

    • setActiveImage

      public void setActiveImage(int active)
      Deprecated.
      Sets the active image for drawing VOIs. VOIs are only drawn in the active image. In addition, algorithms are executed on the active window.
      Specified by:
      setActiveImage in class ViewJFrameBase
      Parameters:
      active - IMAGE_A or IMAGE_B

    • setAlphaBlend

      public void setAlphaBlend(int value)
      Deprecated.
      Sets the alpha blending of parameter for two image displaying.
      Specified by:
      setAlphaBlend in class ViewJFrameBase
      Parameters:
      value - amount [0,100] that is the percentage of Image A to be displayed and (1-percentage) of Image B to be displayed

    • setControls

      public void setControls()
      Deprecated.
      Sets the menu and controls (i.e. toolbars) of the main frame! This puts only the menus and controls needed to controls the operations of this frame. Different image frames have different menu and controls.
      Specified by:
      setControls in class ViewJFrameBase

    • setCTMode

      public void setCTMode(int st, int end)
      Deprecated.
      This method is used to set Computed Tomography (CT) presets for CT images.
      Parameters:
      st - starting preset of the window
      end - ending preset of the window
      See Also:

    • setDisplayMode

      public void setDisplayMode(int mode)
      Deprecated.
      Change the image display mode.
      Parameters:
      mode - IMAGE_A or IMAGE_B or IMAGE_A_B

    • setEnabled

      public void setEnabled(boolean flag)
      Deprecated.
      Controls whether or not the images/VOIs of the frame can be modified.
      Specified by:
      setEnabled in class ViewJFrameBase
      Parameters:
      flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified

    • setImageB

      public void setImageB(ModelImage image)
      Deprecated.
      Accessor that sets the imageB.
      Specified by:
      setImageB in class ViewJFrameBase
      Parameters:
      image - image to set frame to

    • setLinearLUT

      public void setLinearLUT()
      Deprecated.
      This method sets the histogram to Linear Transfer Function Mode.

    • setLUT

      public void setLUT(ModelLUT newLUT)
      Deprecated.
      Change the panel's LUT.
      Parameters:
      newLUT - the new LUT

    • setLUTA

      public void setLUTA(ModelLUT LUT)
      Deprecated.
      Replaces the LUT A component.
      Parameters:
      LUT - new LUT

    • setLUTB

      public void setLUTB(ModelLUT LUT)
      Deprecated.
      Replaces the LUT B component.
      Parameters:
      LUT - new LUT

    • setPaintBitmapSwitch

      public void setPaintBitmapSwitch(boolean flag)
      Deprecated.
      DOCUMENT ME!
      Specified by:
      setPaintBitmapSwitch in class ViewJFrameBase
      Parameters:
      flag - DOCUMENT ME!

    • setRGBTA

      public void setRGBTA(ModelRGB RGBT)
      Deprecated.
      The following 2 functions set the RGB tables for images A and B.
      Specified by:
      setRGBTA in class ViewJFrameBase
      Parameters:
      RGBT - DOCUMENT ME!

    • setRGBTB

      public void setRGBTB(ModelRGB RGBT)
      Deprecated.
      DOCUMENT ME!
      Specified by:
      setRGBTB in class ViewJFrameBase
      Parameters:
      RGBT - DOCUMENT ME!

    • setSlice

      public void setSlice(int slice)
      Deprecated.
      Does nothing in this class.
      Specified by:
      setSlice in interface ViewImageUpdateInterface
      Parameters:
      slice - DOCUMENT ME!

    • setTimeSlice

      public void setTimeSlice(int tSlice)
      Deprecated.
      Does nothing in this class.
      Specified by:
      setTimeSlice in interface ViewImageUpdateInterface
      Parameters:
      tSlice - DOCUMENT ME!

    • setTitle

      public void setTitle()
      Deprecated.
      setTitle.
      Specified by:
      setTitle in class ViewJFrameBase

    • update

      public void update()
      Deprecated.
      Redisplays histoLUT.

    • updateFrames

      public void updateFrames(boolean flag)
      Deprecated.
      Update registration frames.
      Parameters:
      flag - whether to display a reloading of the image in the frames

    • updateHistoLUT

      public void updateHistoLUT(ModelImage _imageA, ModelLUT _LUTa, ModelImage _imageB, ModelLUT _LUTb, boolean progressFlag)
      Deprecated.
      This method is called to update the histogram(s) displayed in each tabbed pane of the frame.
      Parameters:
      _imageA - image A
      _LUTa - lookup table for image A
      _imageB - image B
      _LUTb - lookup table for image B
      progressFlag - passed to calculateHistogram algorithm. If false progress bar is not displayed

    • updateImageExtents

      public boolean updateImageExtents()
      Deprecated.
      This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.
      Specified by:
      updateImageExtents in interface ViewImageUpdateInterface
      Specified by:
      updateImageExtents in class ViewJFrameBase
      Returns:
      DOCUMENT ME!
      See Also:

    • updateImages

      public boolean updateImages()
      Deprecated.
      This methods calls the componentImage's REPAINT method to redraw the screen. Without LUT changes or image changes
      Specified by:
      updateImages in interface ViewImageUpdateInterface
      Returns:
      DOCUMENT ME!

    • updateImages

      public boolean updateImages(boolean flag)
      Deprecated.
      This methods calls the componentImage's update method to redraw the screen. Without LUT changes. Does nothing in this class.
      Specified by:
      updateImages in interface ViewImageUpdateInterface
      Parameters:
      flag - forces show to re import image and calc. java image
      Returns:
      boolean confirming successful update

    • updateImages

      public boolean updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean flag, int interpMode)
      Deprecated.
      This methods calls the componentImage's update method to redraw the screen. Does nothing in this class.
      Specified by:
      updateImages in interface ViewImageUpdateInterface
      Parameters:
      LUTa - LUT used to update imageA
      LUTb - LUT used to update imageB
      flag - forces show to re import image and calc. java image
      interpMode - image interpolation method (Nearest or Smooth)
      Returns:
      boolean confirming a successful update

    • updateLUTPositionString

      public void updateLUTPositionString(String str)
      Deprecated.

    • windowActivated

      public void windowActivated(WindowEvent event)
      Deprecated.
      Unchanged.
      Specified by:
      windowActivated in interface WindowListener
      Overrides:
      windowActivated in class ViewJFrameBase
      Parameters:
      event - DOCUMENT ME!

    • windowClosed

      public void windowClosed(WindowEvent event)
      Deprecated.
      Unchanged.
      Specified by:
      windowClosed in interface WindowListener
      Overrides:
      windowClosed in class ViewJFrameBase
      Parameters:
      event - DOCUMENT ME!

    • windowClosing

      public void windowClosing(WindowEvent event)
      Deprecated.
      Calls close.
      Specified by:
      windowClosing in interface WindowListener
      Overrides:
      windowClosing in class ViewJFrameBase
      Parameters:
      event - event that triggered function

    • windowDeactivated

      public void windowDeactivated(WindowEvent event)
      Deprecated.
      Unchanged.
      Specified by:
      windowDeactivated in interface WindowListener
      Overrides:
      windowDeactivated in class ViewJFrameBase
      Parameters:
      event - DOCUMENT ME!

    • windowDeiconified

      public void windowDeiconified(WindowEvent event)
      Deprecated.
      Unchanged.
      Specified by:
      windowDeiconified in interface WindowListener
      Overrides:
      windowDeiconified in class ViewJFrameBase
      Parameters:
      event - DOCUMENT ME!

    • windowIconified

      public void windowIconified(WindowEvent event)
      Deprecated.
      Unchanged.
      Specified by:
      windowIconified in interface WindowListener
      Overrides:
      windowIconified in class ViewJFrameBase
      Parameters:
      event - DOCUMENT ME!

    • windowOpened

      public void windowOpened(WindowEvent event)
      Deprecated.
      Unchanged.
      Specified by:
      windowOpened in interface WindowListener
      Overrides:
      windowOpened in class ViewJFrameBase
      Parameters:
      event - DOCUMENT ME!

    • buildMenu

      private void buildMenu()
      Deprecated.
      This method builds a menu which contains the options for opening/saving a LUT or set of transfer functions, closing the LUT, and utilities such as CT presets.