Package gov.nih.mipav.view.renderer.WildMagic

Class VolumeTriPlanarRender

java.lang.Object

WildMagic.LibApplications.OpenGLApplication.Application

WildMagic.LibApplications.OpenGLApplication.JavaApplication

WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRender

All Implemented Interfaces:

com.jogamp.opengl.GLEventListener, SpaceNavigatorListener, NavigationBehavior.Callback, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.io.Serializable, java.util.EventListener, javax.swing.event.ChangeListener

Direct Known Subclasses:

VolumeTriPlanerRenderDTI

public class VolumeTriPlanarRender
extends VolumeTriPlanarRenderBase
implements com.jogamp.opengl.GLEventListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.awt.event.MouseListener, NavigationBehavior.Callback

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected boolean	altPressed
private int	animateStep
private JPanelAnnotationAnimation	annotationAnimationPanel
private java.util.HashMap<java.lang.String,java.lang.Float>	annotationDiameters
private java.util.HashMap<java.lang.String,java.lang.Boolean>	annotationLabelsDisplay
private java.lang.String[]	annotationNames
private VOIVector	annotationPositions
private java.util.HashMap<java.lang.String,VolumeSurface>	annotationSpheres
private java.util.HashMap<java.lang.String,WildMagic.LibFoundation.Mathematics.ColorRGB>	annotationSpheresColors
private java.util.HashMap<java.lang.String,java.lang.Boolean>	annotationSpheresDisplay
private int	annotationSpheresIndex
private java.util.HashMap<java.lang.String,VOI>	annotationVOIs
protected RendererListener	configuredListener
protected VolumeTriPlanarInterface	m_kParent	Parent user-interface and display frame.
private VOILatticeManagerInterface	m_kVOIInterface
private java.util.HashMap<java.lang.String,java.lang.Boolean>	neuriteDisplay
private java.util.Vector<java.lang.String>	neuriteNames
private java.util.HashMap<java.lang.String,VolumeSurface[]>	neuriteSurfaces
private java.util.HashMap<java.lang.String,VOI[]>	neuriteVOIs
protected boolean	rightMousePressed
private static long	serialVersionUID
protected boolean	shiftPressed
private float	sphereScale

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

animateSlice, annotatePtsCounter, annotatePtsList, caps, fSample_mouseDragged, fSample_mouseReleased, gl_height, gl_width, glp, init, isAnnotateEnabled, isMouseControlEnabled, isNavigationEnabled, isPathPlanningEnabled, kGeometryBranchPath, kPoly, kPolyNode, latticeClip, latticeClipAxes, latticeClipBox, latticeClipExtents, latticeClipPos, m_afArbEquation, m_afArbEquationInv, m_akSceneTarget, m_akSlicesColor, m_bArbClipOn, m_bCrop, m_bDisplay, m_bDisplaySecond, m_bDropper, m_bErase, m_bFirstDisplay, m_bFirstRender, m_bGeodesicEnabled, m_bPaint, m_bPaintCan, m_bPaintEnabled, m_bPickCorrespondence, m_bPlay4D, m_bPlay4DVOIs, m_bResetImages, m_bUpdateCenterOnDisplay, m_bWriteImage, m_fAnimateRate, m_iAnimateCount, m_iBrushSize, m_iExtractLevel, m_iStereo, m_kArbitraryClip, m_kArbitraryClipInv, m_kDTIDisplay, m_kFBO, m_kFlyPathGraphCurve, m_kNewCenter, m_kNormalColorPathUnvisited, m_kPaintColor, m_kSculptor, m_kSlices, m_kVolumeBox, m_kVolumeClip, m_kVolumeCube, m_kVolumeRayCast, m_pkPlane, m_pkScreenCamera, m_spkPlaneEffect, ms_akLUTTexture, ms_NumHistogramLUTs, navigationBehavior, profile, sharedDrawable, sharedRenderer, sliceDir, sphereClip, sphereRadius

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

currentLocation, defaultVelocityRotational, defaultVelocityTranslational, dpiScale, hyperstack, hyperstackColormap, isSpaceNavCodeRunning, m_akLights, m_bDispose, m_bDoClip, m_bExtract, m_bFirstDrag, m_bInit, m_bModified, m_bMouseDrag, m_bPickPending, m_bShared, m_bSnapshot, m_bSurfaceMaskUpdate, m_bSurfaceUpdate, m_bTestFrameRate, m_bVisible, m_fMax, m_fX, m_fY, m_fZ, m_iCaptureFPS, m_iScreenCaptureCounter, m_iXPick, m_iYPick, m_kAnimator, m_kCuller, m_kDeleteList, m_kDisplayList, m_kPicker, m_kSceneToWorld, m_kTranslate, m_kVolumeImageA, m_kVolumeImageA_New, m_kVolumeImageA_Old, m_kVolumeImageB, m_kVolumeImageB_New, m_kVolumeImageB_Old, m_kWinLevel, m_kXRotate, m_kYRotate, m_kZRotate, m_spkCull, m_spkScene, mouseRot, nearPlane, rotPower, rotScalar, transPower, transScalar, updateBoundingCube, zVector, ZXDistanceStep, ZYDistanceStep, ZZDistanceStep

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors

Constructor	Description
VolumeTriPlanarRender(VolumeImage[] images, WildMagic.LibGraphics.Rendering.Texture colormap)
VolumeTriPlanarRender(VolumeTriPlanarInterface kParent, com.jogamp.opengl.util.Animator kAnimator, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)	Construct the Volume/Surface/Tri-Planar renderer.
VolumeTriPlanarRender(VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)	Construct the Volume/Surface/Tri-Planar renderer.
VolumeTriPlanarRender(VolumeTriPlanarRender kShared, com.jogamp.opengl.awt.GLCanvas kCanvas, VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)	Construct the Volume/Surface/Tri-Planar renderer.

Method Summary

Modifier and Type	Method	Description
void	add3DMarker(VOI textVOI, boolean automaticLabel, boolean multiSelect)
void	add3DMarker(VOI textVOI, boolean automaticLabel, boolean multiSelect, boolean isShift)
void	addAnimationVOIs(VOIVector vois, JPanelAnnotationAnimation annotationAnimationPanel)
void	addAnnotationPoint(WildMagic.LibFoundation.Mathematics.Vector3f point, WildMagic.LibFoundation.Mathematics.Vector3f scannerPt)	Add the annotation point
void	addConfiguredListener(RendererListener listener)
void	addNeurite(java.lang.String neuriteName, java.lang.String[] names, WildMagic.LibFoundation.Mathematics.ColorRGB color)
private void	addSphere(WildMagic.LibFoundation.Mathematics.Vector3f center, int index)
void	addSphereVOIs(VOI annotations)
private void	animateAlgorithm()
java.lang.String	annotationPrefix()
void	annotationVOIsUpdate(int value)
boolean	applySculpt(boolean bAll)	Apply the sculpt region to the volume.
void	clear3DSelection()
void	clearPath()	Clear the annotated path
private void	createAnnotatePoint(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)	Create a new Annotation point at the position specified.
private WildMagic.LibGraphics.SceneGraph.Polyline	createBranchPathGeometryScaled(int iBranch)	Translate the path points from image coordinate to view volume coordinate.
private WildMagic.LibGraphics.SceneGraph.TriMesh	createNeuriteSurface(VOIContour neurite, WildMagic.LibFoundation.Mathematics.ColorRGB color, float radius)
protected void	CreateScene()	Called by the init() function.
private WildMagic.LibGraphics.Surfaces.TubeSurface	createTube(VOIContour neurite)
void	deleteSelectedPoint()
void	display(com.jogamp.opengl.GLAutoDrawable arg0)
private boolean	displayedNeurite(java.lang.String neuriteName)
void	displayNeurite(java.lang.String neuriteName, boolean display)
void	dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)	memory cleanup.
boolean	doAutomaticLabels()
void	generatePath()	Generate the path planning path.
void	getAnnotationInfo(java.lang.String name, boolean[] display, java.awt.Color[] color, float[] diameter, boolean[] displayLabel, java.awt.Color[] labelColor)
WildMagic.LibFoundation.Mathematics.Vector3f	getPositionScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)	Scaled coordinates for the current position along the path for viewing.
VOI	getSelectedVOI(java.lang.String name)
boolean	hasSelectedPoint()
boolean	is3DSelectionEnabled()
boolean	isEditAnnotations()
void	keyPressed(java.awt.event.KeyEvent e)	Part of the KeyListener interface.
void	keyReleased(java.awt.event.KeyEvent e)
boolean	modify3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt)
void	mouseDragged(java.awt.event.MouseEvent e)	Rotates the object with a virtual trackball:
void	mousePressed(java.awt.event.MouseEvent e)	Rotates the object with a virtual trackball:
void	mouseReleased(java.awt.event.MouseEvent e)	Rotates the object with a virtual trackball:
void	moveSelectedPoint(WildMagic.LibFoundation.Mathematics.Vector3f direction)
protected void	Pick()	Picking.
private boolean	PickSlice3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos, WildMagic.LibFoundation.Mathematics.Vector3f kDir, WildMagic.LibFoundation.Mathematics.Vector3f maxPt)
private void	PickVolume3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos, WildMagic.LibFoundation.Mathematics.Vector3f kDir, WildMagic.LibFoundation.Mathematics.Vector3f maxPt)
void	play4DVOIs(boolean bOn)
private void	processRightMouseDrag(java.awt.event.MouseEvent kEvent)	If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)
void	reCreateScene(VolumeImage image)	Called by the init() function.
boolean	select3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt, boolean rightMouse, boolean multiSelect)
void	setAnnotationDiameter(java.lang.String name, float diameter)
void	setAnnotationMode(boolean _isAnnotateEnabled)
void	setAnnotationVOIColor(java.lang.String name, WildMagic.LibFoundation.Mathematics.ColorRGB color)
void	setCameraCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)	Update the camera in 3D view window.
void	setCameraViewRotationDegree(int degree)	Set camera view rotation degree
void	setDefaultCursor()
void	setDisplayAnnotation(java.lang.String name, boolean display)
void	setDisplayAnnotationLabel(java.lang.String name, boolean display)
void	setMouseControlFlythru(boolean _isMouseControl)
void	setNeuriteColor(java.lang.String neuriteName, WildMagic.LibFoundation.Mathematics.ColorRGB color)
void	setPathPlanningFlythru(boolean _isPathPlanning)
void	setupNavigationScenegraph()	Setup the Navigation scene graph view for debugging purpose
void	setVOILatticeManager(VOILatticeManagerInterface newVOIInterface)
private void	setWindowLevel(float fX, float fY, boolean first)
private WildMagic.LibFoundation.Curves.NaturalSpline3	smoothCurve(VOIContour curve, float[] time)
void	toggleNavigation(boolean _isNavigationEnabled)	Toggle Navigation mode.
void	undoSculpt(boolean bAll)	Undo applying the sculpt region to the volume.
protected void	update4D(boolean bForward)
protected void	update4DVOIs(boolean bForward)
private void	updateContour(VOIContour contour, VOI positions, java.lang.String[] names)
private void	updateNeurite(java.lang.String neuriteName, java.lang.String[] names, WildMagic.LibFoundation.Mathematics.ColorRGB color)
void	updateSceneNodePoint(java.lang.String name, WildMagic.LibFoundation.Mathematics.Vector3f position)	Currently only being used to update the picking point
protected void	UpdateSceneRotation()	Updates the displayed objects based on any user mouse rotation.
void	updateSlicesCenter(WildMagic.LibFoundation.Mathematics.Vector3f loc)	Update the bottom 3 planar view center
void	updateVOIs()
protected void	updateVOIs(VOIVector kVOIs)
void	viewChanged(NavigationBehavior behavior, int iEvent)	Navigation behavior callback handler
boolean	writeImage()	Writes a the frame buffer as a .jpg image to disk.

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

addAnimationLattice, addAnimationVOIs, addGeodesic, addSurface, addSurface, addSurface, addTract, addVolumeVOI, applyClipFilter, blend, clearSculpt, clipAnnotations, CMPMode, CreateRenderTarget, cropClipVolume, deleteVOIs, displayArbitraryClipPlane, displayBoundingBox, displayClipPlane, displayClipPlane, displayNode, displayOrientationCube, displaySurface, displayVOIs, displayVolumeRaycast, displayVolumeSlices, disposeShared, doClip, drawVOI, DRRMode, enableArbitraryClipPlane, enableClipPlane, enableEyeClipPlane, enableEyeInvClipPlane, enableGeodesic, enablePaint, enableSculpt, eraseAllPaint, extractMeshFromVolume, getABBlend, getArbitratyClip, getArbitratyClipOn, getClip, getClipAEEnable, getClipColor, getClipDisplay, getClipEnable, getClipInv, getClipInvDisplay, getClipInvEnable, getContainingPanel, getDPIScale, getGradientMagnitude, getGroupColor, getHistogramLUTTexture, getHistogramLUTTextureIndex, getIPD, getMaterial, getOpacity, getPolylines, getSculpt, getSculptEnabled, getSurface, getSurfaceArea, getSurfaceAreaString, getSurfaceCenter, getSurfaceVolume, getSurfaceVolumeString, getTranslateSurface, getVolumeSurface, init, init, initClass, initShared, invertSculpt, MIPMode, mouseClicked, Move, MULTIHISTOMode, newSharedCanvas, NormalKernel, pickCorrespondence, play4D, play4DVOIs, reCreateScene, redrawSurfaceTexture, releaseShared, reloadShaders, removeAll, removeAllGeodesic, removeAllSurfaces, removeGeodesic, removePolyline, removeSurface, Render, replaceGeodesic, resetView, reshape, rollbackToCenter, save, saveCroppedImage, selfShadow, setABBlend, setAnimationSpeed, setAnimationSpeed, setArbColor, setArbitraryClipPlane, setArbitratyClip, setArbitratyClip, setBackface, setBackgroundColor, setBoundingBoxColor, setBoundingBoxColor, setCenter, setClipping, setClipPlane, setClipPlaneColor, setColor, SetCustomBlend, setDisplayAllGlyphs, setDisplayArrows, setDisplayCylinders, setDisplayEllipsoids, setDisplayTubes, setDrawingShape, setDTIImage, setEllipseMod, setEyeClipPlane, setEyeColor, setEyeInvClipPlane, setEyeInvColor, setGradientMagnitude, setHyperStack, setImageB, setImageNew, setImageOn, setImages, setIntenstityLevel, setIPD, setLatticeClip, setLUTNew, setMaterial, setMouseRotationSpeed, setMouseTranslationSpeed, setMouseZoomSpeed, setPickable, setPlaneConstant, setPolygonMode, setPolylineColor, setRGBTA, setRGBTB, setSliceOpacity, setStereo, setSurfaceTexture, setView, setVolumeBlend, setVolumeColor, setVolumeSamplesMouseDragged, setVolumeSamplesMouseReleased, showBoundingBox, showSlice, smoothMesh, smoothThree, smoothTwo, startRecording, startStopVOIAnimation, stateChanged, SURFASTMode, SURMode, toggleDisplaySurface, toggleDisplayVOI, toggleDisplayVolume, toggleDisplayVolumeSlices, toggleGeodesicPathDisplay, translateSurface, updateCenterOnDisplay, updateData, updateLevWidgetState, updateSphere

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

AddNode, checkIfSpaceNavNeedsCalibration, dispose, drawText, fineMovement, GetCanvas, getCounter, getDisplayList, getImage, GetLights, getNearPlane, GetNode, getNormalizedXDim, getNormalizedYDim, getNormalizedZDim, getRotationCutoffValue, getRotationScaleFactor, GetSceneRotation, getSceneToWorldMatrix, getTranslate, getTranslationCutoffValue, getTranslationScaleFactor, getVolumeImage, getVolumeImageB, invertRX, invertRY, invertRZ, invertTX, invertTY, invertTZ, isUseMouseRotationCutoffs, isUseMouseTranslationCutoffs, isVisible, normalMovement, pauseAnimator, processSpaceNavEvent, processSpaceNavEvent, record, reInitialize, RemoveNode, RenderFrameRate, resetAxis, resetAxisX, resetAxisXInv, resetAxisY, saveAVIMovie, saveQuickTimeMovie, setCameraNearPlane, setDefaultLighting, setOrthographicProjection, setPerspectiveProjection, setRotationCutoffValue, setRotationScaleFactor, SetSceneRotation, setTranslationCutoffValue, setTranslationScaleFactor, setUseMouseRotationCutoffs, setUseMouseTranslationCutoffs, setVisible, startAnimator, updateImageFromRotation, updateLighting

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyTyped, LookDown, LookUp, MeasureTime, mouseEntered, mouseExited, mouseMoved, mouseWheelMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

TestStreaming

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.jogamp.opengl.GLEventListener

init, reshape

Methods inherited from interface java.awt.event.KeyListener

keyTyped

Methods inherited from interface java.awt.event.MouseListener

mouseClicked, mouseEntered, mouseExited

Methods inherited from interface java.awt.event.MouseMotionListener

mouseMoved

Field Detail

serialVersionUID

private static final long serialVersionUID

See Also:

Constant Field Values

m_kParent

protected VolumeTriPlanarInterface m_kParent

Parent user-interface and display frame.

configuredListener

protected RendererListener configuredListener

rightMousePressed

protected boolean rightMousePressed

altPressed

protected boolean altPressed

shiftPressed

protected boolean shiftPressed

m_kVOIInterface

private VOILatticeManagerInterface m_kVOIInterface

animateStep

private int animateStep

annotationPositions

private VOIVector annotationPositions

annotationDiameters

private java.util.HashMap<java.lang.String,java.lang.Float> annotationDiameters

annotationSpheres

private java.util.HashMap<java.lang.String,VolumeSurface> annotationSpheres

annotationSpheresDisplay

private java.util.HashMap<java.lang.String,java.lang.Boolean> annotationSpheresDisplay

annotationSpheresIndex

private int annotationSpheresIndex

annotationVOIs

private java.util.HashMap<java.lang.String,VOI> annotationVOIs

neuriteVOIs

private java.util.HashMap<java.lang.String,VOI[]> neuriteVOIs

neuriteSurfaces

private java.util.HashMap<java.lang.String,VolumeSurface[]> neuriteSurfaces

neuriteDisplay

private java.util.HashMap<java.lang.String,java.lang.Boolean> neuriteDisplay

annotationSpheresColors

private java.util.HashMap<java.lang.String,WildMagic.LibFoundation.Mathematics.ColorRGB> annotationSpheresColors

annotationAnimationPanel

private JPanelAnnotationAnimation annotationAnimationPanel

annotationLabelsDisplay

private java.util.HashMap<java.lang.String,java.lang.Boolean> annotationLabelsDisplay

annotationNames

private java.lang.String[] annotationNames

sphereScale

private float sphereScale

neuriteNames

private java.util.Vector<java.lang.String> neuriteNames

Constructor Detail

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeTriPlanarInterface kParent,
                             com.jogamp.opengl.util.Animator kAnimator,
                             VolumeImage kVolumeImageA,
                             VolumeImage kVolumeImageB)

Construct the Volume/Surface/Tri-Planar renderer.

Parameters:

kParent - parent user-interface and frame.

kAnimator - animator used to display the canvas.

kVolumeImageA - volume data and textures for ModelImage A.

kVolumeImageB - volume data and textures for ModelImage B.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeTriPlanarRender kShared,
                             com.jogamp.opengl.awt.GLCanvas kCanvas,
                             VolumeTriPlanarInterface kParent,
                             VolumeImage kVolumeImageA,
                             VolumeImage kVolumeImageB)

Construct the Volume/Surface/Tri-Planar renderer.

Parameters:

kParent - parent user-interface and frame.

kAnimator - animator used to display the canvas.

kVolumeImageA - volume data and textures for ModelImage A.

kVolumeImageB - volume data and textures for ModelImage B.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeTriPlanarInterface kParent,
                             VolumeImage kVolumeImageA,
                             VolumeImage kVolumeImageB)

Construct the Volume/Surface/Tri-Planar renderer.

Parameters:

kVolumeImageA - volume data and textures for ModelImage A.

kVolumeImageB - volume data and textures for ModelImage B.

VolumeTriPlanarRender

public VolumeTriPlanarRender(VolumeImage[] images,
                             WildMagic.LibGraphics.Rendering.Texture colormap)

Method Detail

applySculpt

public boolean applySculpt(boolean bAll)

Apply the sculpt region to the volume.

Overrides:

applySculpt in class VolumeTriPlanarRenderBase

display

public void display(com.jogamp.opengl.GLAutoDrawable arg0)

Specified by:

display in interface com.jogamp.opengl.GLEventListener

Overrides:

display in class VolumeTriPlanarRenderBase

addConfiguredListener

public void addConfiguredListener(RendererListener listener)

dispose

public void dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)

Description copied from class: GPURenderBase

memory cleanup.

Specified by:

dispose in interface com.jogamp.opengl.GLEventListener

Overrides:

dispose in class VolumeTriPlanarRenderBase

setVOILatticeManager

public void setVOILatticeManager(VOILatticeManagerInterface newVOIInterface)

clear3DSelection

public void clear3DSelection()

annotationPrefix

public java.lang.String annotationPrefix()

doAutomaticLabels

public boolean doAutomaticLabels()

is3DSelectionEnabled

public boolean is3DSelectionEnabled()

isEditAnnotations

public boolean isEditAnnotations()

deleteSelectedPoint

public void deleteSelectedPoint()

moveSelectedPoint

public void moveSelectedPoint(WildMagic.LibFoundation.Mathematics.Vector3f direction)

hasSelectedPoint

public boolean hasSelectedPoint()

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

Part of the KeyListener interface. Pressing 'b' toggles displaying the proxy-geometry versus the ray-traced volume.

Specified by:

keyPressed in interface java.awt.event.KeyListener

Overrides:

keyPressed in class VolumeTriPlanarRenderBase

Parameters:

e - the key event.

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

Specified by:

keyReleased in interface java.awt.event.KeyListener

Overrides:

keyReleased in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Description copied from class: VolumeTriPlanarRenderBase

Rotates the object with a virtual trackball:

Specified by:

mousePressed in interface java.awt.event.MouseListener

Overrides:

mousePressed in class VolumeTriPlanarRenderBase

Parameters:

e - the MouseEvent

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Description copied from class: VolumeTriPlanarRenderBase

Rotates the object with a virtual trackball:

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Overrides:

mouseReleased in class VolumeTriPlanarRenderBase

Parameters:

e - the MouseEvent

setDefaultCursor

public void setDefaultCursor()

select3DMarker

public boolean select3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt,
                              boolean rightMouse,
                              boolean multiSelect)

modify3DMarker

public boolean modify3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt)

add3DMarker

public void add3DMarker(VOI textVOI,
                        boolean automaticLabel,
                        boolean multiSelect,
                        boolean isShift)

add3DMarker

public void add3DMarker(VOI textVOI,
                        boolean automaticLabel,
                        boolean multiSelect)

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent e)

Rotates the object with a virtual trackball:

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

Overrides:

mouseDragged in class VolumeTriPlanarRenderBase

Parameters:

e - the MouseEvent

processRightMouseDrag

private void processRightMouseDrag(java.awt.event.MouseEvent kEvent)

If the right mouse button is pressed and dragged. processRightMouseDrag updates the HistoLUT window and level (contrast and brightness)

Parameters:

kEvent - the mouse event generated by a mouse drag

setWindowLevel

private void setWindowLevel(float fX,
                            float fY,
                            boolean first)

undoSculpt

public void undoSculpt(boolean bAll)

Undo applying the sculpt region to the volume.

Overrides:

undoSculpt in class VolumeTriPlanarRenderBase

CreateScene

protected void CreateScene()

Called by the init() function. Creates and initialized the scene-graph.

Overrides:

CreateScene in class VolumeTriPlanarRenderBase

reCreateScene

public void reCreateScene(VolumeImage image)

Description copied from class: VolumeTriPlanarRenderBase

Called by the init() function. Creates and initialized the scene-graph.

Overrides:

reCreateScene in class VolumeTriPlanarRenderBase

Pick

protected void Pick()

Picking. If a display list object has picking enabled, find the picked polygon based on the mouse position.

Overrides:

Pick in class VolumeTriPlanarRenderBase

PickVolume3D

private void PickVolume3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos,
                          WildMagic.LibFoundation.Mathematics.Vector3f kDir,
                          WildMagic.LibFoundation.Mathematics.Vector3f maxPt)

PickSlice3D

private boolean PickSlice3D(WildMagic.LibFoundation.Mathematics.Vector3f kPos,
                            WildMagic.LibFoundation.Mathematics.Vector3f kDir,
                            WildMagic.LibFoundation.Mathematics.Vector3f maxPt)

update4D

protected void update4D(boolean bForward)

Overrides:

update4D in class VolumeTriPlanarRenderBase

updateVOIs

public void updateVOIs()

updateVOIs

protected void updateVOIs(VOIVector kVOIs)

Overrides:

updateVOIs in class VolumeTriPlanarRenderBase

addSphere

private void addSphere(WildMagic.LibFoundation.Mathematics.Vector3f center,
                       int index)

toggleNavigation

public void toggleNavigation(boolean _isNavigationEnabled)

Toggle Navigation mode.

Overrides:

toggleNavigation in class VolumeTriPlanarRenderBase

Parameters:

isNavigationEnabled - is navigation checkbox selected or not.

setPathPlanningFlythru

public void setPathPlanningFlythru(boolean _isPathPlanning)

setMouseControlFlythru

public void setMouseControlFlythru(boolean _isMouseControl)

setAnnotationMode

public void setAnnotationMode(boolean _isAnnotateEnabled)

setupNavigationScenegraph

public void setupNavigationScenegraph()

Setup the Navigation scene graph view for debugging purpose

viewChanged

public void viewChanged(NavigationBehavior behavior,
                        int iEvent)

Navigation behavior callback handler

Specified by:

viewChanged in interface NavigationBehavior.Callback

Parameters:

behavior - reference to this MjFlyPathBehavior in which the view changed.

iEvent - Bitmask identifies the event(s) which caused the view to change. Bitmask created from OR of EVENT_* defintions.

getPositionScaled

public WildMagic.LibFoundation.Mathematics.Vector3f getPositionScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)

Scaled coordinates for the current position along the path for viewing.

Parameters:

Point - in normalized path coordinates.

Returns:

Point3f A new instance created which contains the path position coordinates, scaled to match the TriMesh in JPanelSurface.

update4DVOIs

protected void update4DVOIs(boolean bForward)

Overrides:

update4DVOIs in class VolumeTriPlanarRenderBase

animateAlgorithm

private void animateAlgorithm()

addAnimationVOIs

public void addAnimationVOIs(VOIVector vois,
                             JPanelAnnotationAnimation annotationAnimationPanel)

addSphereVOIs

public void addSphereVOIs(VOI annotations)

Overrides:

addSphereVOIs in class VolumeTriPlanarRenderBase

displayedNeurite

private boolean displayedNeurite(java.lang.String neuriteName)

updateNeurite

private void updateNeurite(java.lang.String neuriteName,
                           java.lang.String[] names,
                           WildMagic.LibFoundation.Mathematics.ColorRGB color)

updateContour

private void updateContour(VOIContour contour,
                           VOI positions,
                           java.lang.String[] names)

displayNeurite

public void displayNeurite(java.lang.String neuriteName,
                           boolean display)

setNeuriteColor

public void setNeuriteColor(java.lang.String neuriteName,
                            WildMagic.LibFoundation.Mathematics.ColorRGB color)

addNeurite

public void addNeurite(java.lang.String neuriteName,
                       java.lang.String[] names,
                       WildMagic.LibFoundation.Mathematics.ColorRGB color)

setAnnotationVOIColor

public void setAnnotationVOIColor(java.lang.String name,
                                  WildMagic.LibFoundation.Mathematics.ColorRGB color)

Overrides:

setAnnotationVOIColor in class VolumeTriPlanarRenderBase

setDisplayAnnotation

public void setDisplayAnnotation(java.lang.String name,
                                 boolean display)

getAnnotationInfo

public void getAnnotationInfo(java.lang.String name,
                              boolean[] display,
                              java.awt.Color[] color,
                              float[] diameter,
                              boolean[] displayLabel,
                              java.awt.Color[] labelColor)

setAnnotationDiameter

public void setAnnotationDiameter(java.lang.String name,
                                  float diameter)

getSelectedVOI

public VOI getSelectedVOI(java.lang.String name)

setDisplayAnnotationLabel

public void setDisplayAnnotationLabel(java.lang.String name,
                                      boolean display)

smoothCurve

private WildMagic.LibFoundation.Curves.NaturalSpline3 smoothCurve(VOIContour curve,
                                                                  float[] time)

createTube

private WildMagic.LibGraphics.Surfaces.TubeSurface createTube(VOIContour neurite)

createNeuriteSurface

private WildMagic.LibGraphics.SceneGraph.TriMesh createNeuriteSurface(VOIContour neurite,
                                                                      WildMagic.LibFoundation.Mathematics.ColorRGB color,
                                                                      float radius)

play4DVOIs

public void play4DVOIs(boolean bOn)

Overrides:

play4DVOIs in class VolumeTriPlanarRenderBase

writeImage

public boolean writeImage()

Description copied from class: GPURenderBase

Writes a the frame buffer as a .jpg image to disk. The file name is captureImage + the image number.

Overrides:

writeImage in class GPURenderBase

Returns:

true on successful write.

annotationVOIsUpdate

public void annotationVOIsUpdate(int value)

UpdateSceneRotation

protected void UpdateSceneRotation()

Description copied from class: GPURenderBase

Updates the displayed objects based on any user mouse rotation.

Overrides:

UpdateSceneRotation in class VolumeTriPlanarRenderBase

updateSceneNodePoint

public void updateSceneNodePoint(java.lang.String name,
                                 WildMagic.LibFoundation.Mathematics.Vector3f position)

Currently only being used to update the picking point

Parameters:

name - surface name

position - surface location

updateSlicesCenter

public void updateSlicesCenter(WildMagic.LibFoundation.Mathematics.Vector3f loc)

Update the bottom 3 planar view center

setCameraCenter

public void setCameraCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)

Update the camera in 3D view window.

Parameters:

kCenter - center in image space

addAnnotationPoint

public void addAnnotationPoint(WildMagic.LibFoundation.Mathematics.Vector3f point,
                               WildMagic.LibFoundation.Mathematics.Vector3f scannerPt)

Add the annotation point

Parameters:

point -

setCameraViewRotationDegree

public void setCameraViewRotationDegree(int degree)

Set camera view rotation degree

Parameters:

degree -

generatePath

public void generatePath()

Generate the path planning path.

clearPath

public void clearPath()

Clear the annotated path

createBranchPathGeometryScaled

private WildMagic.LibGraphics.SceneGraph.Polyline createBranchPathGeometryScaled(int iBranch)

Translate the path points from image coordinate to view volume coordinate.

Parameters:

iBranch -

Returns:

createAnnotatePoint

private void createAnnotatePoint(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)

Create a new Annotation point at the position specified.

Parameters:

kPosition - position of new annotation point.