Package gov.nih.mipav.model.structures.jama

Class METIS

java.lang.Object

gov.nih.mipav.model.structures.jama.METIS

All Implemented Interfaces:

java.io.Serializable

public class METIS
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	METIS.ckrinfo_t
(package private) class	METIS.cnbr_t
(package private) class	METIS.ctrl_t
(package private) class	METIS.gk_mcore_t
(package private) class	METIS.gk_mop_t
(package private) class	METIS.graph_t
(package private) class	METIS.ikv_t
(package private) static class	METIS.mctype_et
(package private) static class	METIS.mdbglvl_et
(package private) static class	METIS.miptype_et
(package private) static class	METIS.mobjtype_et
(package private) static class	METIS.moptions_et
(package private) static class	METIS.moptype_et
(package private) static class	METIS.mrtype_et
(package private) class	METIS.nrinfo_t
(package private) static class	METIS.rstatus_et
(package private) class	METIS.vkrinfo_t
(package private) class	METIS.vnbr_t

Field Summary

Fields

Modifier and Type	Field	Description
private int	gk_cur_jbufs
private int	GK_MOPT_CORE
private int	GK_MOPT_HEAP
private int	GK_MOPT_MARK
(package private) METIS.gk_mcore_t	gkmcore
private int	KMETIS_DEFAULT_UFACTOR
private int	MAX_JBUFS
private int	MCPMETIS_DEFAULT_UFACTOR
private int	OMETIS_DEFAULT_UFACTOR
private int	PMETIS_DEFAULT_UFACTOR
private long	seed

Constructor Summary

Constructors

Constructor	Description
METIS()

Method Summary

Modifier and Type	Method	Description
(package private) void	Change2CNumbering(int nvtxs, int[] xadj, int[] adjncy)
(package private) int	CheckParams(METIS.ctrl_t ctrl)
(package private) METIS.graph_t	CompressGraph(METIS.ctrl_t ctrl, int nvtxs, int[] xadj, int[] adjncy, int[] vwgt, int[] cptr, int[] cind)
(package private) METIS.graph_t	CreateGraph()
(package private) void	FreeCtrl(METIS.ctrl_t r_ctrl)
(package private) void	FreeWorkSpace(METIS.ctrl_t ctrl)
(package private) METIS.mctype_et	getmctype(int mctype)
(package private) METIS.mdbglvl_et	getmdbglvl(int mdbglvl)
(package private) METIS.miptype_et	getmiptype(int miptype)
private METIS.mobjtype_et	getmobjtype(int num)
(package private) METIS.mrtype_et	getmrtype(int mrtype)
(package private) int	GETOPTION(int[] options, METIS.moptions_et idx, int defval)
(package private) METIS.mctype_et	GETOPTION(int[] options, METIS.moptions_et idx, METIS.mctype_et defval)
(package private) METIS.miptype_et	GETOPTION(int[] options, METIS.moptions_et idx, METIS.miptype_et defval)
(package private) METIS.mobjtype_et	GETOPTION(int[] options, METIS.moptions_et idx, METIS.mobjtype_et defval)
(package private) METIS.mrtype_et	GETOPTION(int[] options, METIS.moptions_et idx, METIS.mrtype_et defval)
(package private) void	gk_gkmcoreAdd(METIS.gk_mcore_t mcore, int type, int nbytes, int[] ptr)
(package private) METIS.gk_mcore_t	gk_gkmcoreCreate()
(package private) void	gk_gkmcorePush(METIS.gk_mcore_t mcore)
(package private) int	gk_malloc_init()
(package private) void	gk_mcoreDestroy(METIS.gk_mcore_t r_mcore, boolean showstats)
(package private) float	I2RUBFACTOR(int ufactor)
(package private) void	ikvsorti(int n, METIS.ikv_t[] base)
(package private) void	InitGraph(METIS.graph_t graph)
(package private) void	InitRandom(int seed)
(package private) void	InitTimers(METIS.ctrl_t ctrl)	This function clears the timers
(package private) int	METIS_NodeND(int[] nvtxs, int[] xadj, int[] adjncy, int[] vwgt, int[] options, int[] perm, int[] iperm)
(package private) void	PrintCtrl(METIS.ctrl_t ctrl)
(package private) METIS.graph_t	PruneGraph(METIS.ctrl_t ctrl, int nvtxs, int[] xadj, int[] adjncy, int[] vwgt, int[] iperm, float factor)
(package private) METIS.ctrl_t	SetupCtrl(METIS.moptype_et optype, int[] options, int ncon, int nparts, float[] tpwgts, float[] ubvec)
(package private) void	SetupGraph_label(METIS.graph_t graph)
(package private) void	SetupGraph_tvwgt(METIS.graph_t graph)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

gkmcore

METIS.gk_mcore_t gkmcore

GK_MOPT_MARK

private final int GK_MOPT_MARK

See Also:

Constant Field Values

GK_MOPT_CORE

private final int GK_MOPT_CORE

See Also:

Constant Field Values

GK_MOPT_HEAP

private final int GK_MOPT_HEAP

See Also:

Constant Field Values

MAX_JBUFS

private final int MAX_JBUFS

See Also:

Constant Field Values

gk_cur_jbufs

private final int gk_cur_jbufs

See Also:

Constant Field Values

PMETIS_DEFAULT_UFACTOR

private final int PMETIS_DEFAULT_UFACTOR

See Also:

Constant Field Values

MCPMETIS_DEFAULT_UFACTOR

private final int MCPMETIS_DEFAULT_UFACTOR

See Also:

Constant Field Values

KMETIS_DEFAULT_UFACTOR

private final int KMETIS_DEFAULT_UFACTOR

See Also:

Constant Field Values

OMETIS_DEFAULT_UFACTOR

private final int OMETIS_DEFAULT_UFACTOR

See Also:

Constant Field Values

seed

private long seed

Constructor Detail

METIS

public METIS()

Method Detail

getmctype

METIS.mctype_et getmctype(int mctype)

getmiptype

METIS.miptype_et getmiptype(int miptype)

getmrtype

METIS.mrtype_et getmrtype(int mrtype)

getmdbglvl

METIS.mdbglvl_et getmdbglvl(int mdbglvl)

getmobjtype

private METIS.mobjtype_et getmobjtype(int num)

METIS_NodeND

int METIS_NodeND(int[] nvtxs,
                 int[] xadj,
                 int[] adjncy,
                 int[] vwgt,
                 int[] options,
                 int[] perm,
                 int[] iperm)

gk_malloc_init

int gk_malloc_init()

gk_gkmcoreCreate

METIS.gk_mcore_t gk_gkmcoreCreate()

gk_gkmcorePush

void gk_gkmcorePush(METIS.gk_mcore_t mcore)

gk_gkmcoreAdd

void gk_gkmcoreAdd(METIS.gk_mcore_t mcore,
                   int type,
                   int nbytes,
                   int[] ptr)

SetupCtrl

METIS.ctrl_t SetupCtrl(METIS.moptype_et optype,
                       int[] options,
                       int ncon,
                       int nparts,
                       float[] tpwgts,
                       float[] ubvec)

GETOPTION

METIS.mobjtype_et GETOPTION(int[] options,
                            METIS.moptions_et idx,
                            METIS.mobjtype_et defval)

GETOPTION

int GETOPTION(int[] options,
              METIS.moptions_et idx,
              int defval)

GETOPTION

METIS.miptype_et GETOPTION(int[] options,
                           METIS.moptions_et idx,
                           METIS.miptype_et defval)

GETOPTION

METIS.mrtype_et GETOPTION(int[] options,
                          METIS.moptions_et idx,
                          METIS.mrtype_et defval)

GETOPTION

METIS.mctype_et GETOPTION(int[] options,
                          METIS.moptions_et idx,
                          METIS.mctype_et defval)

I2RUBFACTOR

float I2RUBFACTOR(int ufactor)

InitRandom

void InitRandom(int seed)

PrintCtrl

void PrintCtrl(METIS.ctrl_t ctrl)

CheckParams

int CheckParams(METIS.ctrl_t ctrl)

FreeCtrl

void FreeCtrl(METIS.ctrl_t r_ctrl)

FreeWorkSpace

void FreeWorkSpace(METIS.ctrl_t ctrl)

gk_mcoreDestroy

void gk_mcoreDestroy(METIS.gk_mcore_t r_mcore,
                     boolean showstats)

Change2CNumbering

void Change2CNumbering(int nvtxs,
                       int[] xadj,
                       int[] adjncy)

InitTimers

void InitTimers(METIS.ctrl_t ctrl)

This function clears the timers

PruneGraph

METIS.graph_t PruneGraph(METIS.ctrl_t ctrl,
                         int nvtxs,
                         int[] xadj,
                         int[] adjncy,
                         int[] vwgt,
                         int[] iperm,
                         float factor)

CreateGraph

METIS.graph_t CreateGraph()

InitGraph

void InitGraph(METIS.graph_t graph)

SetupGraph_tvwgt

void SetupGraph_tvwgt(METIS.graph_t graph)

SetupGraph_label

void SetupGraph_label(METIS.graph_t graph)

CompressGraph

METIS.graph_t CompressGraph(METIS.ctrl_t ctrl,
                            int nvtxs,
                            int[] xadj,
                            int[] adjncy,
                            int[] vwgt,
                            int[] cptr,
                            int[] cind)

ikvsorti

void ikvsorti(int n,
              METIS.ikv_t[] base)