Package gov.nih.mipav.view.dialogs

Class JDialogHMRF_EM

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogScriptableBase

gov.nih.mipav.view.dialogs.JDialogHMRF_EM

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class JDialogHMRF_EM
extends JDialogScriptableBase
implements AlgorithmInterface

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private AlgorithmHMRF_EM	alg
private int	colorWeighting
private static final int	EQUAL_WEIGHTS
private JRadioButton	equalButton
(package private) String	fileNameBase
private float	gaussianSigma
private static final int	GRAPHIC_WEIGHTS
private JRadioButton	graphicsButton
private ModelImage	image	Source image.
private int	maxEMIterations
private int	maxMAPIterations
private int	numberClusters
private ModelImage	resultImage	result image
private String	resultsFileName
private JLabel	resultsFileNameLabel
private JTextField	resultsFileNameText
private boolean	showMAPplot
private JCheckBox	showMAPplotCheckBox
private JTextField	textClusters
private JTextField	textGauss
private JTextField	textMaxEMIterations
private JTextField	textMaxMAPIterations

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogHMRF_EM()	Empty constructor needed for dynamic instantiation.
JDialogHMRF_EM(Frame theParentFrame, ModelImage im)	Creates a new JDialogHMRF_EM object.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)
void	algorithmPerformed(AlgorithmBase algorithm)	This method is required if the AlgorithmPerformed interface is implemented.
protected void	callAlgorithm()	Starts the algorithm.
private void	init()	init Sets up the GUI (panels, buttons, etc) and displays it on the screen.
void	setColorWeighting(int colorWeighting)
void	setGaussianSigma(float gaussianSigma)
protected void	setGUIFromParams()	set GUI from params
void	setMaxEMIterations(int maxEMIterations)
void	setMaxMAPIterations(int maxMAPIterations)
void	setNumberClusters(int numberClusters)
void	setShowMAPplot(boolean showMAPplot)
private boolean	setVariables()
protected void	storeParamsFromGUI()	store params from gui

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

EQUAL_WEIGHTS

private static final int EQUAL_WEIGHTS

See Also:

• Constant Field Values

GRAPHIC_WEIGHTS

private static final int GRAPHIC_WEIGHTS

See Also:

• Constant Field Values

image

private ModelImage image

Source image.

resultImage

private ModelImage resultImage

result image

alg

private AlgorithmHMRF_EM alg

equalButton

private JRadioButton equalButton

graphicsButton

private JRadioButton graphicsButton

colorWeighting

private int colorWeighting

textClusters

private JTextField textClusters

numberClusters

private int numberClusters

textGauss

private JTextField textGauss

gaussianSigma

private float gaussianSigma

textMaxEMIterations

private JTextField textMaxEMIterations

maxEMIterations

private int maxEMIterations

textMaxMAPIterations

private JTextField textMaxMAPIterations

maxMAPIterations

private int maxMAPIterations

showMAPplotCheckBox

private JCheckBox showMAPplotCheckBox

showMAPplot

private boolean showMAPplot

fileNameBase

String fileNameBase

resultsFileNameLabel

private JLabel resultsFileNameLabel

resultsFileNameText

private JTextField resultsFileNameText

resultsFileName

private String resultsFileName

Constructor Details

JDialogHMRF_EM

public JDialogHMRF_EM()

Empty constructor needed for dynamic instantiation.

JDialogHMRF_EM

public JDialogHMRF_EM(Frame theParentFrame,
 ModelImage im)

Creates a new JDialogHMRF_EM object.

Parameters:

theParentFrame - Parent frame.

im - Source image.

Method Details

init

private void init()

init Sets up the GUI (panels, buttons, etc) and displays it on the screen.

setVariables

private boolean setVariables()

actionPerformed

public void actionPerformed(ActionEvent event)

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class JDialogBase

callAlgorithm

protected void callAlgorithm()

Description copied from class: JDialogScriptableBase

Starts the algorithm. Already exists in most algorithm dialogs. Should be called during scripted execution and regular operation.

Specified by:

callAlgorithm in class JDialogScriptableBase

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - Algorithm that caused the event.

setColorWeighting

public void setColorWeighting(int colorWeighting)

Parameters:

colorWeighting -

setNumberClusters

public void setNumberClusters(int numberClusters)

Parameters:

numberClusters -

setGaussianSigma

public void setGaussianSigma(float gaussianSigma)

Parameters:

gaussianSigma -

setMaxEMIterations

public void setMaxEMIterations(int maxEMIterations)

Parameters:

maxEMIterations -

setMaxMAPIterations

public void setMaxMAPIterations(int maxMAPIterations)

Parameters:

maxMAPIterations -

setShowMAPplot

public void setShowMAPplot(boolean showMAPplot)

Parameters:

showMAPplot -

setGUIFromParams

protected void setGUIFromParams()

set GUI from params

Specified by:

setGUIFromParams in class JDialogScriptableBase

storeParamsFromGUI

protected void storeParamsFromGUI()
                           throws ParserException

store params from gui

Specified by:

storeParamsFromGUI in class JDialogScriptableBase

Throws:

ParserException - If there is a problem creating/recording the new parameters.