java.lang.Object
- gov.nih.mipav.model.structures.TalairachTransformInfo

All Implemented Interfaces:

java.io.Serializable
```
public class TalairachTransformInfo
extends java.lang.Object
implements java.io.Serializable
```
This is the structure to store information needed to compute ACPC and Talairach normalization.
If you have any questions, please drop me a line. ===== Pilou Bazin MEDIC, JHU pbazin1@jhmi.edu

Version:

July 26, 2004

Author:

Pierre-Louis Bazin

See Also:

AlgorithmBase, TextRemoval, PlugInDialogTextRemoval, Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`private static float`	`ACPC_ANTERIOR`	acpc constants.
`private static float`	`ACPC_INFERIOR`	acpc constants.
`private static float`	`ACPC_LATERAL`	acpc constants.
`private static float`	`ACPC_POSTERIOR`	acpc constants.
`private static float`	`ACPC_SUPERIOR`	acpc constants.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`acpcAC`	Anterior Comissure in acpc space.
`private int[]`	`acpcDim`	Image dimensions.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`acpcMax`	ACPC min and max extents of the brain.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`acpcMin`	ACPC min and max extents of the brain.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`acpcPC`	Posterior Comissure in acpc space.
`private float`	`acpcRes`	Voxel resolution (cubic).
`private boolean`	`isAcpc`	True if we have the data to compute orig <-> acpc.
`private boolean`	`isTlrc`	True if we ahve the data to compute acpc <-> tlrc.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`origAC`	Anterior Comissure in original space.
`private int[]`	`origDim`	Original image dimensions.
`private float[][]`	`origOrient`	ACPC orientation in original image.
`private float[]`	`origOrigin`	Original image origin.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`origPC`	Posterior Comissure in original space.
`private float[]`	`origRes`	Original image voxel resolutions.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`static int`	`TLRC_AC_TO_LAT`	acpc constants.
`static int`	`TLRC_AC_TO_PC`	acpc constants.
`static int`	`TLRC_AC_TO_TOP`	acpc constants.
`static int`	`TLRC_BOT_TO_AC`	acpc constants. most inferior to AC.
`static int`	`TLRC_FRONT_TO_AC`	acpc constants.
`static int`	`TLRC_PC_TO_BACK`	acpc constants.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`tlrcAC`	Anterior Comissure in Talairach space.
`private int[]`	`tlrcDim`	Image dimensions.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`tlrcPC`	Posterior Comissure in Talairach space.
`private float[]`	`tlrcRes`	Voxel resolutions for the sub-boxes.
`private boolean`	`useIncorrectAcpcXDim`	Whether to use the old, incorrect ACPC X dim calculation, which overcounted by one (used in backwards compatibility for Dr.

Constructor Summary

Constructors
Constructor Description

TalairachTransformInfo()
Creates a new TalairachTransformInfo object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`acpcToOrig(int x, int y, int z, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from acpc to orig...matrix is implicitly inverted in code.
`void`	`acpcToOrig(WildMagic.LibFoundation.Mathematics.Vector3f pt, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from acpc to orig...matrix is implicitly inverted in code.
`void`	`acpcToTlrc(int x, int y, int z, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from acpc to tlrc.
`void`	`acpcToTlrc(WildMagic.LibFoundation.Mathematics.Vector3f pt, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from acpc to tlrc.
`double[][]`	`displayAcpc()`	For debug: return the transform as a 4x4 matrix.
`double[][]`	`displayAcpcInverse()`	For debug: return the transform inverse as a 4x4 matrix.
`double[][]`	`displayTlrc(int id)`	Unknown use and currently not being referenced within MIPAV
`void`	`finalize()`	Prepares this class for cleanup.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getAcpcAC()`	Gets anterior commissure in acpc space.
`int[]`	`getAcpcDim()`	Gets acpc image dimensions.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getAcpcMax()`	Gets acpc max extent.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getAcpcMin()`	Gets acpc min extent.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getAcpcPC()`	Gets posterior comissure in acpc space.
`float`	`getAcpcRes()`	Gets resolution in acpc space.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getOrigAC()`	Gets anterior comissure in original space.
`int[]`	`getOrigDim()`	Gets original dims.
`int`	`getOrigImageOrientLabel()`	Determines the image orienation in the forward direction...orig to acpc or acpc to tlrc.
`float[][]`	`getOrigOrient()`	Gets the orienatations from original space.
`int[]`	`getOrigOrientLabelsInverse()`	When going from acpc to orig or tlrc to orig, this method is used to determine what he new axis orienations.
`float[]`	`getOrigOrigin()`	Gets original origin.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getOrigPC()`	Gets posterior comissure in original space.
`float[]`	`getOrigRes()`	Gets resolution in original space.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getTlrcAC()`	Gets anterior comissure in tlrc space.
`int[]`	`getTlrcDim()`	Gets dims in tlrc space.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getTlrcPC()`	Gets posterior comissure in tlrc space.
`float[]`	`getTlrcRes()`	Gets resoltion in tlrc space.
`boolean`	`isAcpc()`	Returns true if we have data to compute orig <-> acpc.
`void`	`isAcpc(boolean flag)`	Sets isACPC flag.
`boolean`	`isTlrc()`	returns true if we have data to compute acpc <-> tlrc.
`void`	`isTlrc(boolean flag)`	Sets isTLRC flag.
`void`	`origToAcpc(int x, int y, int z, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from orig to acpc.
`void`	`origToAcpc(WildMagic.LibFoundation.Mathematics.Vector3f pt, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from orig to acpc.
`void`	`origToTlrc(int x, int y, int z, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from orig to tlrc.
`void`	`origToTlrc(WildMagic.LibFoundation.Mathematics.Vector3f pt, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from orig to tlrc.
`private float[]`	`parseFloatParameters(java.lang.String line, int nb)`	Parsing utility.
`private int[]`	`parseIntParameters(java.lang.String line, int nb)`	Parsing Parameters Utility
`void`	`readFromFile(java.lang.String filename)`	Reads transform info file
`void`	`setAcpcMax(WildMagic.LibFoundation.Mathematics.Vector3f pt)`	Sets acpc max extent.
`void`	`setAcpcMin(WildMagic.LibFoundation.Mathematics.Vector3f pt)`	Sets acpc min extent.
`void`	`setAcpcPC(WildMagic.LibFoundation.Mathematics.Vector3f pt)`	Sets acpc posterior comissure.
`void`	`setAcpcRes(float res)`	Sets acps resolution.
`void`	`setOrigAC(WildMagic.LibFoundation.Mathematics.Vector3f pt)`	Sets the anterior comissure in original space.
`void`	`setOrigDim(int[] dim)`	Sets dims in original space.
`void`	`setOrigOrient(float[][] orient)`	Sets orienatationsin origianl space.
`void`	`setOrigOrigin(float[] origin)`	Sets origin in original space.
`void`	`setOrigPC(WildMagic.LibFoundation.Mathematics.Vector3f pt)`	Sets posterior comissure in original space.
`void`	`setOrigRes(float[] res)`	Sets resolution in original space.
`void`	`setTlrcRes(float[] res)`	Sets resolution in tlrc space
`void`	`setUseIncorrectAcpcXDim(boolean flag)`	Sets whether the TalairachTransform acpcDim x value should be set up (incorrectly) like it was in previous versions (for Pierpaoli's group).
`void`	`tlrcToAcpc(int x, int y, int z, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from tlrc to acpc...matrix is implicitly inverted in code.
`void`	`tlrcToAcpc(WildMagic.LibFoundation.Mathematics.Vector3f pt, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from tlrc to acpc...matrix is implicitly inverted in code.
`void`	`tlrcToOrig(int x, int y, int z, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from tlrc to orig...matrix is implicitly inverted in code.
`void`	`tlrcToOrig(WildMagic.LibFoundation.Mathematics.Vector3f pt, WildMagic.LibFoundation.Mathematics.Vector3f trans)`	Transforms point from tlrc to orig...matrix is implicitly inverted in code.
`void`	`writeToFile(java.lang.String filename)`	writes transform information to file

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - ACPC_LATERAL
```
private static final float ACPC_LATERAL
```
    acpc constants. Lateral.
    
    See Also:
    
    Constant Field Values
  - ACPC_ANTERIOR
```
private static final float ACPC_ANTERIOR
```
    acpc constants. Anterior.
    
    See Also:
    
    Constant Field Values
  - ACPC_POSTERIOR
```
private static final float ACPC_POSTERIOR
```
    acpc constants. Posterior.
    
    See Also:
    
    Constant Field Values
  - ACPC_INFERIOR
```
private static final float ACPC_INFERIOR
```
    acpc constants. Inferior.
    
    See Also:
    
    Constant Field Values
  - ACPC_SUPERIOR
```
private static final float ACPC_SUPERIOR
```
    acpc constants. Superior.
    
    See Also:
    
    Constant Field Values
  - TLRC_AC_TO_PC
```
public static final int TLRC_AC_TO_PC
```
    acpc constants. AC to PC.
    
    See Also:
    
    Constant Field Values
  - TLRC_FRONT_TO_AC
```
public static final int TLRC_FRONT_TO_AC
```
    acpc constants. Most Anterior to AC.
    
    See Also:
    
    Constant Field Values
  - TLRC_PC_TO_BACK
```
public static final int TLRC_PC_TO_BACK
```
    acpc constants. PC to most posterior.
    
    See Also:
    
    Constant Field Values
  - TLRC_BOT_TO_AC
```
public static final int TLRC_BOT_TO_AC
```
    acpc constants. most inferior to AC.
    
    See Also:
    
    Constant Field Values
  - TLRC_AC_TO_TOP
```
public static final int TLRC_AC_TO_TOP
```
    acpc constants. AC to most superior.
    
    See Also:
    
    Constant Field Values
  - TLRC_AC_TO_LAT
```
public static final int TLRC_AC_TO_LAT
```
    acpc constants. AC to left or right.
    
    See Also:
    
    Constant Field Values
  - acpcAC
```
private WildMagic.LibFoundation.Mathematics.Vector3f acpcAC
```
    Anterior Comissure in acpc space.
  - acpcDim
```
private int[] acpcDim
```
    Image dimensions.
  - acpcMax
```
private WildMagic.LibFoundation.Mathematics.Vector3f acpcMax
```
    ACPC min and max extents of the brain.
  - acpcMin
```
private WildMagic.LibFoundation.Mathematics.Vector3f acpcMin
```
    ACPC min and max extents of the brain.
  - acpcPC
```
private WildMagic.LibFoundation.Mathematics.Vector3f acpcPC
```
    Posterior Comissure in acpc space.
  - acpcRes
```
private float acpcRes
```
    Voxel resolution (cubic).
  - isAcpc
```
private boolean isAcpc
```
    True if we have the data to compute orig <-> acpc.
  - isTlrc
```
private boolean isTlrc
```
    True if we ahve the data to compute acpc <-> tlrc.
  - origAC
```
private WildMagic.LibFoundation.Mathematics.Vector3f origAC
```
    Anterior Comissure in original space.
  - origDim
```
private int[] origDim
```
    Original image dimensions.
  - origOrient
```
private float[][] origOrient
```
    ACPC orientation in original image.
  - origOrigin
```
private float[] origOrigin
```
    Original image origin.
  - origPC
```
private WildMagic.LibFoundation.Mathematics.Vector3f origPC
```
    Posterior Comissure in original space.
  - origRes
```
private float[] origRes
```
    Original image voxel resolutions.
  - tlrcAC
```
private WildMagic.LibFoundation.Mathematics.Vector3f tlrcAC
```
    Anterior Comissure in Talairach space.
  - tlrcDim
```
private int[] tlrcDim
```
    Image dimensions.
  - tlrcPC
```
private WildMagic.LibFoundation.Mathematics.Vector3f tlrcPC
```
    Posterior Comissure in Talairach space.
  - tlrcRes
```
private float[] tlrcRes
```
    Voxel resolutions for the sub-boxes.
  - useIncorrectAcpcXDim
```
private boolean useIncorrectAcpcXDim
```
    Whether to use the old, incorrect ACPC X dim calculation, which overcounted by one (used in backwards compatibility for Dr. Pierpaoli's group).
- Constructor Detail
  - TalairachTransformInfo
```
public TalairachTransformInfo()
```
    Creates a new TalairachTransformInfo object.
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for cleanup. Calls the finalize method for existing elements, closes any open files and sets other elements to null.
    
    Overrides:
    
    finalize in class java.lang.Object
  - acpcToOrig
```
public void acpcToOrig(WildMagic.LibFoundation.Mathematics.Vector3f pt,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from acpc to orig...matrix is implicitly inverted in code.
    
    Parameters:
    
    pt - old point
    
    trans - new point
  - acpcToOrig
```
public void acpcToOrig(int x,
                       int y,
                       int z,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from acpc to orig...matrix is implicitly inverted in code.
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    trans - new point
  - acpcToTlrc
```
public void acpcToTlrc(WildMagic.LibFoundation.Mathematics.Vector3f pt,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from acpc to tlrc.
    
    Parameters:
    
    pt - old point
    
    trans - new point
  - acpcToTlrc
```
public void acpcToTlrc(int x,
                       int y,
                       int z,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from acpc to tlrc.
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    trans - new point
  - displayAcpc
```
public double[][] displayAcpc()
```
    For debug: return the transform as a 4x4 matrix.
    
    Returns:
    
    4*4 matrix
  - displayAcpcInverse
```
public double[][] displayAcpcInverse()
```
    For debug: return the transform inverse as a 4x4 matrix.
    
    Returns:
    
    4*4 matrix
  - displayTlrc
```
public double[][] displayTlrc(int id)
```
    Unknown use and currently not being referenced within MIPAV
  - getAcpcAC
```
public WildMagic.LibFoundation.Mathematics.Vector3f getAcpcAC()
```
    Gets anterior commissure in acpc space.
    
    Returns:
    
    acpcAC
  - getAcpcDim
```
public int[] getAcpcDim()
```
    Gets acpc image dimensions.
    
    Returns:
    
    acpcDim
  - getAcpcMax
```
public WildMagic.LibFoundation.Mathematics.Vector3f getAcpcMax()
```
    Gets acpc max extent.
    
    Returns:
    
    acpcMax
  - getAcpcMin
```
public WildMagic.LibFoundation.Mathematics.Vector3f getAcpcMin()
```
    Gets acpc min extent.
    
    Returns:
    
    acpcMin
  - getAcpcPC
```
public WildMagic.LibFoundation.Mathematics.Vector3f getAcpcPC()
```
    Gets posterior comissure in acpc space.
    
    Returns:
    
    acpcPC
  - getAcpcRes
```
public float getAcpcRes()
```
    Gets resolution in acpc space.
    
    Returns:
    
    acpcRes
  - getOrigAC
```
public WildMagic.LibFoundation.Mathematics.Vector3f getOrigAC()
```
    Gets anterior comissure in original space.
    
    Returns:
    
    origAC
  - getOrigDim
```
public int[] getOrigDim()
```
    Gets original dims.
    
    Returns:
    
    origDim
  - getOrigOrigin
```
public float[] getOrigOrigin()
```
    Gets original origin.
    
    Returns:
    
    origOrigin
  - getOrigImageOrientLabel
```
public int getOrigImageOrientLabel()
```
    Determines the image orienation in the forward direction...orig to acpc or acpc to tlrc.
    
    Returns:
    
    image orientation
  - getOrigOrient
```
public float[][] getOrigOrient()
```
    Gets the orienatations from original space.
    
    Returns:
    
    origOrient
  - getOrigOrientLabelsInverse
```
public int[] getOrigOrientLabelsInverse()
```
    When going from acpc to orig or tlrc to orig, this method is used to determine what he new axis orienations. It uses an inverted matrix for determination.
    
    Returns:
    
    orientations
  - getOrigPC
```
public WildMagic.LibFoundation.Mathematics.Vector3f getOrigPC()
```
    Gets posterior comissure in original space.
    
    Returns:
    
    orgiPC
  - getOrigRes
```
public float[] getOrigRes()
```
    Gets resolution in original space.
    
    Returns:
    
    orgiRes
  - getTlrcAC
```
public WildMagic.LibFoundation.Mathematics.Vector3f getTlrcAC()
```
    Gets anterior comissure in tlrc space.
    
    Returns:
    
    tlrcAC
  - getTlrcDim
```
public int[] getTlrcDim()
```
    Gets dims in tlrc space.
    
    Returns:
    
    tlrcDim
  - getTlrcPC
```
public WildMagic.LibFoundation.Mathematics.Vector3f getTlrcPC()
```
    Gets posterior comissure in tlrc space.
    
    Returns:
    
    tlrcPC
  - getTlrcRes
```
public float[] getTlrcRes()
```
    Gets resoltion in tlrc space.
    
    Returns:
    
    tlrcRes
  - isAcpc
```
public boolean isAcpc()
```
    Returns true if we have data to compute orig <-> acpc.
    
    Returns:
    
    isAcpc
  - isAcpc
```
public void isAcpc(boolean flag)
```
    Sets isACPC flag.
    
    Parameters:
    
    boolean - flag
  - isTlrc
```
public boolean isTlrc()
```
    returns true if we have data to compute acpc <-> tlrc.
    
    Returns:
    
    isTlrc
  - isTlrc
```
public void isTlrc(boolean flag)
```
    Sets isTLRC flag.
    
    Parameters:
    
    boolean - flag
  - origToAcpc
```
public void origToAcpc(WildMagic.LibFoundation.Mathematics.Vector3f pt,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from orig to acpc.
    
    Parameters:
    
    pt - old point
    
    trans - new point
  - origToAcpc
```
public void origToAcpc(int x,
                       int y,
                       int z,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from orig to acpc.
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    trans - new point
  - origToTlrc
```
public void origToTlrc(WildMagic.LibFoundation.Mathematics.Vector3f pt,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from orig to tlrc.
    
    Parameters:
    
    pt - old point
    
    trans - new point
  - origToTlrc
```
public void origToTlrc(int x,
                       int y,
                       int z,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from orig to tlrc.
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    trans - new point
  - readFromFile
```
public void readFromFile(java.lang.String filename)
```
    Reads transform info file
    
    Parameters:
    
    filename - name of transform info file
  - setAcpcMax
```
public void setAcpcMax(WildMagic.LibFoundation.Mathematics.Vector3f pt)
```
    Sets acpc max extent.
    
    Parameters:
    
    Vector3f - pt
  - setAcpcMin
```
public void setAcpcMin(WildMagic.LibFoundation.Mathematics.Vector3f pt)
```
    Sets acpc min extent.
    
    Parameters:
    
    Vector3f - pt
  - setAcpcPC
```
public void setAcpcPC(WildMagic.LibFoundation.Mathematics.Vector3f pt)
```
    Sets acpc posterior comissure.
    
    Parameters:
    
    Vector3f - pt
  - setAcpcRes
```
public void setAcpcRes(float res)
```
    Sets acps resolution.
    
    Parameters:
    
    float - res
  - setOrigAC
```
public void setOrigAC(WildMagic.LibFoundation.Mathematics.Vector3f pt)
```
    Sets the anterior comissure in original space.
    
    Parameters:
    
    Vector3f - point
  - setOrigDim
```
public void setOrigDim(int[] dim)
```
    Sets dims in original space.
    
    Parameters:
    
    int - [] dim
  - setOrigOrigin
```
public void setOrigOrigin(float[] origin)
```
    Sets origin in original space.
    
    Parameters:
    
    origin -
  - setOrigOrient
```
public void setOrigOrient(float[][] orient)
```
    Sets orienatationsin origianl space.
    
    Parameters:
    
    float - [][] orient
  - setOrigPC
```
public void setOrigPC(WildMagic.LibFoundation.Mathematics.Vector3f pt)
```
    Sets posterior comissure in original space.
    
    Parameters:
    
    Vector3f - point
  - setOrigRes
```
public void setOrigRes(float[] res)
```
    Sets resolution in original space.
    
    Parameters:
    
    float - [] res
  - setTlrcRes
```
public void setTlrcRes(float[] res)
```
    Sets resolution in tlrc space
    
    Parameters:
    
    float - [] res
  - tlrcToAcpc
```
public void tlrcToAcpc(WildMagic.LibFoundation.Mathematics.Vector3f pt,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from tlrc to acpc...matrix is implicitly inverted in code.
    
    Parameters:
    
    pt - old point
    
    trans - new point
  - tlrcToAcpc
```
public void tlrcToAcpc(int x,
                       int y,
                       int z,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from tlrc to acpc...matrix is implicitly inverted in code.
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    trans - new point
  - tlrcToOrig
```
public void tlrcToOrig(WildMagic.LibFoundation.Mathematics.Vector3f pt,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from tlrc to orig...matrix is implicitly inverted in code.
    
    Parameters:
    
    pt - old point
    
    trans - new point
  - tlrcToOrig
```
public void tlrcToOrig(int x,
                       int y,
                       int z,
                       WildMagic.LibFoundation.Mathematics.Vector3f trans)
```
    Transforms point from tlrc to orig...matrix is implicitly inverted in code.
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    trans - new point
  - writeToFile
```
public void writeToFile(java.lang.String filename)
```
    writes transform information to file
    
    Parameters:
    
    filename - name of transform info file
  - parseFloatParameters
```
private float[] parseFloatParameters(java.lang.String line,
                                     int nb)
```
    Parsing utility.
    
    Parameters:
    
    line -
    
    nb -
    
    Returns:
  - parseIntParameters
```
private int[] parseIntParameters(java.lang.String line,
                                 int nb)
```
    Parsing Parameters Utility
    
    Parameters:
    
    line -
    
    nb -
    
    Returns:
  - setUseIncorrectAcpcXDim
```
public void setUseIncorrectAcpcXDim(boolean flag)
```
    Sets whether the TalairachTransform acpcDim x value should be set up (incorrectly) like it was in previous versions (for Pierpaoli's group).
    
    Parameters:
    
    flag - True if the old, incorrect x acpcDim value should be used (which overcounts by one).

Class TalairachTransformInfo

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

ACPC_LATERAL

ACPC_ANTERIOR

ACPC_POSTERIOR

ACPC_INFERIOR

ACPC_SUPERIOR

TLRC_AC_TO_PC

TLRC_FRONT_TO_AC

TLRC_PC_TO_BACK

TLRC_BOT_TO_AC

TLRC_AC_TO_TOP

TLRC_AC_TO_LAT

acpcAC

acpcDim

acpcMax

acpcMin

acpcPC

acpcRes

isAcpc

isTlrc

origAC

origDim

origOrient

origOrigin

origPC

origRes

tlrcAC

tlrcDim

tlrcPC

tlrcRes

useIncorrectAcpcXDim

Constructor Detail

TalairachTransformInfo

Method Detail

finalize

acpcToOrig

acpcToOrig

acpcToTlrc

acpcToTlrc

displayAcpc

displayAcpcInverse

displayTlrc

getAcpcAC

getAcpcDim

getAcpcMax

getAcpcMin

getAcpcPC

getAcpcRes

getOrigAC

getOrigDim

getOrigOrigin

getOrigImageOrientLabel

getOrigOrient

getOrigOrientLabelsInverse

getOrigPC

getOrigRes

getTlrcAC

getTlrcDim

getTlrcPC

getTlrcRes

isAcpc

isAcpc

isTlrc

isTlrc

origToAcpc

origToAcpc

origToTlrc

origToTlrc

readFromFile

setAcpcMax

setAcpcMin

setAcpcPC

setAcpcRes

setOrigAC