java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.file.FileInfoBase
  - - gov.nih.mipav.model.file.FileInfoNRRD

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class FileInfoNRRD
extends FileInfoBase
```
See Also:

FileNRRD, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase
  FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields
Modifier and Type	Field	Description
`private java.lang.String`	`contentString`	Concise textual description of the information in the array
`private java.lang.String`	`DWMRI_B_VALUE`	"DWMRI_b-value:=b " : This key/value pair gives the (scalar) diffusion-weighting value, in units of s/mm^2.
`private java.lang.String[][]`	`dwmriGradient`	For every index position NNNN along the DWI axis (whichever is the non-spatial axis identified by the "list" or "vector" kind field), either "DWMRI_gradient_NNNN:=x y z " or "DWMRI_B-matrix_NNNN:=xx xy xz yy yz zz " must be given (except if "DWMRI_NEX_NNNN:= M " is used).
`private java.lang.String`	`encodingString`	Data compression - raw, gzip
`private java.lang.String[]`	`labelString`	Axis names such as X, Y, or Z
`private java.lang.String`	`modalityString`	Diffusion weighted MRI is currently the only value that has been seen for modality in our samples.
`private float`	`sliceThickness`
`private java.lang.String`	`spaceString`	Possible values are "right-anterior-superior", "left-anterior-superior", "left-posterior-superior", "right-anterior-superior-time", "left-anterior-superior-time", "left-posterior-superior-time", "scanner-xyz", "scanner-xyz-time", "3d-right-handed", "3d-left-handed", "3d-right-handed-time", "3d-left-handed-time"
`private float`	`versionNumber`	Version of the NRRD file format being used.

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase
ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors
Constructor Description

FileInfoNRRD(java.lang.String name, java.lang.String directory, int format)
file info storage constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`displayAboutInfo(JDialogBase dlog, TransMatrix matrix)`	Displays the file information.
`void`	`setContent(java.lang.String contentString)`	Accessor setting contentString giving textual description of information in the array
`void`	`setDWMRI_B_VALUE(java.lang.String DWMRI_B_VALUE)`	Accessor setting DWMRI_B_VALUE
`void`	`setDwmriGradient(java.lang.String[][] dwmriGradient)`	Accessor setting dwmriGradient
`void`	`setEncoding(java.lang.String encodingString)`	Accessor setting encoding string telling data compression method
`void`	`setLabels(java.lang.String[] labelString)`	Accessor setting labelString for axis names
`void`	`setModality(java.lang.String modalityString)`	Accessor setting modalityString
`void`	`setSliceThickness(float sliceThickness)`	Accessor setting sliceThickness
`void`	`setSpace(java.lang.String spaceString)`	Accessor setting spaceString
`void`	`setVersionNumber(float versionNumber)`	Accessor setting versionNumber, version of NRRD file format being used.

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase
copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
clone, nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - versionNumber
```
private float versionNumber
```
    Version of the NRRD file format being used.
  - encodingString
```
private java.lang.String encodingString
```
    Data compression - raw, gzip
  - contentString
```
private java.lang.String contentString
```
    Concise textual description of the information in the array
  - labelString
```
private java.lang.String[] labelString
```
    Axis names such as X, Y, or Z
  - sliceThickness
```
private float sliceThickness
```
  - modalityString
```
private java.lang.String modalityString
```
    Diffusion weighted MRI is currently the only value that has been seen for modality in our samples.
  - DWMRI_B_VALUE
```
private java.lang.String DWMRI_B_VALUE
```
    "DWMRI_b-value:=b " : This key/value pair gives the (scalar) diffusion-weighting value, in units of s/mm^2. Example: "DWMRI_b-value:=1000". The effective magnitude of diffusion-weighting for each DWI is determined with some simple calculations based on the individual per-DWI gradient directions or B-matrices.
  - dwmriGradient
```
private java.lang.String[][] dwmriGradient
```
    For every index position NNNN along the DWI axis (whichever is the non-spatial axis identified by the "list" or "vector" kind field), either "DWMRI_gradient_NNNN:=x y z " or "DWMRI_B-matrix_NNNN:=xx xy xz yy yz zz " must be given (except if "DWMRI_NEX_NNNN:= M " is used).
  - spaceString
```
private java.lang.String spaceString
```
    Possible values are "right-anterior-superior", "left-anterior-superior", "left-posterior-superior", "right-anterior-superior-time", "left-anterior-superior-time", "left-posterior-superior-time", "scanner-xyz", "scanner-xyz-time", "3d-right-handed", "3d-left-handed", "3d-right-handed-time", "3d-left-handed-time"
- Constructor Detail
  - FileInfoNRRD
```
public FileInfoNRRD(java.lang.String name,
                    java.lang.String directory,
                    int format)
```
    file info storage constructor.
    
    Parameters:
    
    name - file name
    
    directory - directory
    
    format - file format
- Method Detail
  - displayAboutInfo
```
public void displayAboutInfo(JDialogBase dlog,
                             TransMatrix matrix)
```
    Displays the file information.
    
    Specified by:
    
    displayAboutInfo in class FileInfoBase
    
    Parameters:
    
    dlog - dialog box that is written to
    
    matrix - transformation matrix
  - setVersionNumber
```
public void setVersionNumber(float versionNumber)
```
    Accessor setting versionNumber, version of NRRD file format being used.
    
    Parameters:
    
    versionNumber -
  - setEncoding
```
public void setEncoding(java.lang.String encodingString)
```
    Accessor setting encoding string telling data compression method
    
    Parameters:
    
    encodingString -
  - setContent
```
public void setContent(java.lang.String contentString)
```
    Accessor setting contentString giving textual description of information in the array
    
    Parameters:
    
    contentString -
  - setLabels
```
public void setLabels(java.lang.String[] labelString)
```
    Accessor setting labelString for axis names
    
    Parameters:
    
    labelString -
  - setSliceThickness
```
public void setSliceThickness(float sliceThickness)
```
    Accessor setting sliceThickness
    
    Overrides:
    
    setSliceThickness in class FileInfoBase
    
    Parameters:
    
    sliceThickness -
  - setModality
```
public void setModality(java.lang.String modalityString)
```
    Accessor setting modalityString
    
    Parameters:
    
    modalityString -
  - setDWMRI_B_VALUE
```
public void setDWMRI_B_VALUE(java.lang.String DWMRI_B_VALUE)
```
    Accessor setting DWMRI_B_VALUE
    
    Parameters:
    
    DWMRI_B_VALUE -
  - setDwmriGradient
```
public void setDwmriGradient(java.lang.String[][] dwmriGradient)
```
    Accessor setting dwmriGradient
    
    Parameters:
    
    dwmriGradient -
  - setSpace
```
public void setSpace(java.lang.String spaceString)
```
    Accessor setting spaceString
    
    Parameters:
    
    spaceString -

Class FileInfoNRRD

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

versionNumber

encodingString

contentString

labelString

sliceThickness

modalityString

DWMRI_B_VALUE

dwmriGradient

spaceString

Constructor Detail

FileInfoNRRD

Method Detail

displayAboutInfo

setVersionNumber

setEncoding

setContent

setLabels

setSliceThickness

setModality

setDWMRI_B_VALUE

setDwmriGradient

setSpace