Package gov.nih.mipav.model.algorithms

Class AlgorithmNonMaxSuppts

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.AlgorithmNonMaxSuppts

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmNonMaxSuppts
extends AlgorithmBase

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private int	radius
private boolean	subpixel
private double	threshold
private VOIVector	VOIs	Non-maximal suppression for features/corners Non maxima suppression and thresholding for points generated by a feature or corner detector.
private double[]	xsubp
private double[]	ysubp

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmNonMaxSuppts(ModelImage destImg, ModelImage srcImg, VOIVector VOIs, int radius, double threshold)
AlgorithmNonMaxSuppts(ModelImage destImg, ModelImage srcImg, VOIVector VOIs, int radius, double threshold, double[] xsubp, double[] ysubp)

Method Summary

Modifier and Type	Method	Description
void	finalize()	finalize -
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

VOIs

private VOIVector VOIs

Non-maximal suppression for features/corners Non maxima suppression and thresholding for points generated by a feature or corner detector. Note: An issue with integer valued images is that if there are multiple pixels all with the same value within distance 2*radius of each other then they will all be marked as local maxima. Copyright (c) 2003-2013 Peter Kovesi Centre for Exploration Targeting The University of Western Australia peter.kovesi at uwa edu au Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. The Software is provided "as is", without warranty of any kind. September 2003 Original version August 2005 Subpixel localization and Octave compatibility January 2010 Fix for completely horizontal and vertical lines (by Thomas Stehle, RWTH Aachen University) January 2011 Warning given if no maxima found

radius

private int radius

threshold

private double threshold

xsubp

private double[] xsubp

ysubp

private double[] ysubp

subpixel

private boolean subpixel

Constructor Details

AlgorithmNonMaxSuppts

public AlgorithmNonMaxSuppts(ModelImage destImg,
 ModelImage srcImg,
 VOIVector VOIs,
 int radius,
 double threshold)

Parameters:

destImg - Optional image. If this is supplied, the thresholded corners are overlayed on this image. This can be useful for parameter tuning

srcImg - Corner strength image

VOIs -

radius - Radius of the region considered in non-maximal suppression. Typical values to use might be 1-3 pixels.

threshold -

hcd - byte buffer containing corner points

AlgorithmNonMaxSuppts

public AlgorithmNonMaxSuppts(ModelImage destImg,
 ModelImage srcImg,
 VOIVector VOIs,
 int radius,
 double threshold,
 double[] xsubp,
 double[] ysubp)

Parameters:

destImg - Optional image. If this is supplied, the thresholded corners are overlayed on this image. This can be useful for parameter tuning

srcImg - Corner strength image

VOIs -

radius - Radius of the region considered in non-maximal suppression. Typical values to use might be 1-3 pixels.

threshold -

xsubp - Sub-pixel localization of feature points is attempted and returned as as additional set of floating point coordinates. Note that you may still want to use the integer valued coordinates to specify centers of correlation windows for feature matching.

ysubp -

Method Details

finalize

public void finalize()

finalize -

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase