Package gov.nih.mipav.view.dialogs

Class JDialogDBSCANClusteringSegment

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogDBSCANClusteringSegment
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogDBSCANClusteringSegment extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
Dialog to get user input, then call the algorithm. The program does 2D superepixel DBSCAN clutering segmentation for color image segmentation. Algorithms are executed in their own thread.
See Also:

  • Field Details

    • MEAN_CENTER

      private final int MEAN_CENTER
      Use serialVersionUID for interoperability.
      See Also:

    • MEDIAN_CENTER

      private final int MEDIAN_CENTER
      See Also:

    • k

      private int k

    • m

      private double m

    • seRadius

      private double seRadius

    • center

      private int center

    • mw1

      private int mw1

    • mw2

      private int mw2

    • nItr

      private int nItr

    • Ec

      private double Ec

    • noSpatialCheckBox

      private JCheckBox noSpatialCheckBox

    • image

      private ModelImage image
      DOCUMENT ME!

    • labelm

      private JLabel labelm
      DOCUMENT ME!

    • labelse

      private JLabel labelse

    • labelk

      private JLabel labelk
      DOCUMENT ME!

    • dbAlgo

      private DBSCANClusteringSegment dbAlgo
      DOCUMENT ME!

    • optionsPanel

      private JPanel optionsPanel
      DOCUMENT ME!

    • resultImage

      private ModelImage resultImage
      DOCUMENT ME!

    • textm

      private JTextField textm

    • enableseCheckBox

      private JCheckBox enableseCheckBox

    • textse

      private JTextField textse

    • textk

      private JTextField textk
      DOCUMENT ME!

    • centerGroup

      private ButtonGroup centerGroup

    • meanButton

      private JRadioButton meanButton

    • medianButton

      private JRadioButton medianButton

    • labelmw1

      private JLabel labelmw1

    • textmw1

      private JTextField textmw1

    • labelmw2

      private JLabel labelmw2

    • textmw2

      private JTextField textmw2

    • labelIter

      private JLabel labelIter

    • textIter

      private JTextField textIter

    • labelEc

      private JLabel labelEc

    • textEc

      private JTextField textEc

  • Constructor Details

    • JDialogDBSCANClusteringSegment

      public JDialogDBSCANClusteringSegment()
      Empty constructor needed for dynamic instantiation (used during scripting).

    • JDialogDBSCANClusteringSegment

      public JDialogDBSCANClusteringSegment(Frame theParentFrame, ModelImage im)
      Creates a new JDialogDBSCANClusteringSegment object.
      Parameters:
      theParentFrame - Parent frame.
      im - Source image.

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - Event that triggers function.

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • getResultImage

      public ModelImage getResultImage()
      Accessor that returns the image.
      Returns:
      The result image.

    • callAlgorithm

      protected void callAlgorithm()
      Once all the necessary variables are set, call the Markov Segment algorithm which will create a new segmented image.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • doPostAlgorithmActions

      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      Overrides:
      doPostAlgorithmActions in class JDialogScriptableBase

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • init

      private void init()
      Initializes the GUI by creating the components, placing them in the dialog, and displaying them.

    • setDefaults

      private void setDefaults()
      Set the default values for the parameters.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.

    • getActionMetadata

      public ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      Specified by:
      getActionMetadata in interface ActionDiscovery
      Returns:
      Metadata for this action.

    • createInputParameters

      public ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      Specified by:
      createInputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the inputs of this algorithm.

    • createOutputParameters

      public ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      Specified by:
      createOutputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the outputs of this algorithm.

    • getOutputImageName

      public String getOutputImageName(String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      Specified by:
      getOutputImageName in interface ActionDiscovery
      Parameters:
      imageParamName - The output image parameter label for which to get the image name.
      Returns:
      The image name of the requested output image parameter label.

    • isActionComplete

      public boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      Specified by:
      isActionComplete in interface ActionDiscovery
      Returns:
      True, if the action is complete. False, if the action failed or is still running.