Package gov.nih.mipav.view.dialogs

Class JDialogMaximumIntensityProjection

  • All Implemented Interfaces:
    AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ViewImageUpdateInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
    public class JDialogMaximumIntensityProjection
extends JDialogScriptableBase
implements ActionDiscovery, AlgorithmInterface, javax.swing.event.ChangeListener, java.awt.event.KeyListener, ViewImageUpdateInterface
    Dialog to call Maximum Intensity Projection. It should be noted that algorithms are executed in own thread. The Maximum Intensity Projection algorithm computes the maximum or the minimum intensity along each projection of a 3D image. The user can specify theshold values in image intensity for the calculation, as well as which projection to compute along (X, Y, or Z), the start and end slice used in the calculation, the size of a sliding 'window' in number of slices to use in the calculation, and whether to calculate the minimum, maximum or both projections. When the sliding window size is not equal to the number of slices used in the calculation the output is a 3D image, where each slice of the output image is computed using the number of slices in the sliding window. When the sliding window size is equal to the number of slices used in the calculation the output image is a 2D image.
    Author:
    joshim2
    See Also:
    Serialized Form

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Field Summary

      Fields 
      Modifier and Type Field Description
      private int cachedTab
      Cached value of selected tab
      private int cFactor
      Used for construction of the preview.
      private int dim
      Used for construction of the preview.
      private boolean doPreview
      Whether preview mode is turned on.
      private int[] endSlice
      Value of the end slice for the calculation (X,Y,Z).
      private int[] extents
      Image extents.
      private ModelImage image
      Source Image.
      private int index
      Used for construction of the preview.
      private boolean[] maximum
      When true, calculate the maximum (X,Y,Z) slices.
      private javax.swing.JCheckBox[] maximumCheck
      CheckBox turns on/off calculating the maximum projection.
      private javax.swing.JTextField[] maxInput
      JTextfield for maximum value of threshold.
      private javax.swing.JTextField[] maxInputB
      JTextfield for maximum Blue value of threshold.
      private javax.swing.JTextField[] maxInputG
      JTextfield for maximum Green value of threshold.
      private javax.swing.JTextField[] maxInputR
      JTextfield for maximum Red value of threshold.
      private float[] maxIntensity
      Maximum intensity threshold.
      private float[] maxIntensityB
      Maximum Blue intensity threshold.
      private float[] maxIntensityG
      Maximum Green intensity threshold.
      private float[] maxIntensityR
      Maximum Red intensity threshold.
      private ModelImage maxSlicePreview
      Single slice preview images
      private ViewJFrameImage maxSliceWindow
      Windows containing preview images
      private boolean[] minimum
      When true, calculate the minimum (X,Y,Z) slices.
      private javax.swing.JCheckBox[] minimumCheck
      CheckBox turns on/off calculating the minimum projection.
      private javax.swing.JTextField[] minInput
      JTextfield for minimum value of threshold.
      private javax.swing.JTextField[] minInputB
      JTextfield for minimum Blue value of threshold.
      private javax.swing.JTextField[] minInputG
      JTextfield for minimum Green value of threshold.
      private javax.swing.JTextField[] minInputR
      JTextfield for minimum Red value of threshold.
      private float[] minIntensity
      Minimum intensity threshold.
      private float[] minIntensityB
      Minimum Blue intensity threshold.
      private float[] minIntensityG
      Minimum Green intensity threshold.
      private float[] minIntensityR
      Minimum Red intensity threshold.
      private ModelImage minSlicePreview
      Single slice preview images
      private ViewJFrameImage minSliceWindow
      Windows containing preview images
      private int nDims
      Image dimension, must be 3.
      private static java.lang.String PREV_OFF  
      private static java.lang.String PREV_ON  
      private static java.lang.String PREVIEW  
      private boolean[] projection
      When true output the X,Y,Z projections.
      private static long serialVersionUID
      Use serialVersionUID for interoperability.
      private int slice
      Current slice of image
      private int sliceLoc
      Used for construction of the preview.
      private int sliceSize
      Used for construction of the preview.
      private javax.swing.JTextField[] startInput
      JTextfield for start slice of the computation.
      private int[] startSlice
      Value of the start slice for the calculation (X,Y,Z).
      private javax.swing.JTextField[] stopInput
      JTextfield for end slice of the computation.
      private javax.swing.JTabbedPane tabbedPane
      The tabbed pane that holds each dimension
      private int[] window
      Value of the window size for the calculation (X,Y,Z).
      private javax.swing.JLabel[] windowLabel
      Label displays the number of slices in the sliding window.
      private ViewJSlider[] windowSlider
      Slider enables user to change the size of the sliding window.

      • Fields inherited from class javax.swing.JDialog

        accessibleContext, rootPane, rootPaneCheckingEnabled

      • Fields inherited from class java.awt.Dialog

        DEFAULT_MODALITY_TYPE

      • Fields inherited from class java.awt.Component

        BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

      • Fields inherited from interface java.awt.image.ImageObserver

        ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

      • Fields inherited from interface javax.swing.WindowConstants

        DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Closes Dialog box when the OK button is pressed and calls the algorithm.
      void algorithmPerformed​(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented.
      void callAlgorithm()
      Calls the algorithm.
      ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in #setGUIFromParams()).
      ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      private void destroyPreview()  
      protected javax.swing.JTextField determineNull​(javax.swing.JTextField min, javax.swing.JTextField max)
      When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
      void focusLost​(java.awt.event.FocusEvent e)
      Unchanged.
      ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      private double getCurrentVal​(double[] buffer)  
      java.lang.String getOutputImageName​(java.lang.String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      private int[] getPreviewExtents()  
      private int getPreviewImageType()  
      private void init()
      Initializes the GUI components and places them in dialog.
      private void initData()
      Allocates local memory.
      private void initMaxPreview()  
      private void initMinPreview()  
      boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      void keyPressed​(java.awt.event.KeyEvent e)  
      void keyReleased​(java.awt.event.KeyEvent e)  
      void keyTyped​(java.awt.event.KeyEvent e)  
      private void populatePreview()
      Previews the currently active slice would loosely go with either min or max sliding window.
      void setComputeMax​(int i, boolean compute)
      Turns computing the maximum projection on for X, Y, or Z processing.
      void setComputeMin​(int i, boolean compute)
      Turns computing the minimum projection on for X, Y, or Z processing.
      void setEndSlice​(int i, int end)
      Sets the end slice for X, Y, or Z processing.
      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      void setMax​(int i, float x)
      Sets the maximum value for X, Y, or Z processing.
      void setMaxB​(int i, float maxB)
      Sets the maximumBlue value for X, Y, or Z processing.
      void setMaxG​(int i, float maxG)
      Sets the maximum Green value for X, Y, or Z processing.
      void setMaxR​(int i, float maxR)
      Sets the maximum Red value for X, Y, or Z processing.
      void setMin​(int i, float x)
      Sets the minimum value for X, Y, or Z processing.
      void setMinB​(int i, float minB)
      Sets the minimum Blue value for X, Y, or Z processing.
      void setMinG​(int i, float minG)
      Sets the minimum Green value for X, Y, or Z processing.
      void setMinR​(int i, float minR)
      Sets the minimum Red value for X, Y, or Z processing.
      void setSlice​(int slice)
      setSlice.
      void setStartSlice​(int i, int start)
      Sets the start slice for X, Y, or Z processing.
      void setTimeSlice​(int tSlice)
      setTimeSlice.
      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      void setWindow​(int i, int size)
      Sets the window size for X, Y, or Z processing.
      void stateChanged​(javax.swing.event.ChangeEvent e)  
      protected void storeParamsFromGUI()
      Record the parameters just used to run this algorithm in a script.
      boolean updateImageExtents()
      This methods calls the componentImage's REPAINT method to redraw the screen.
      boolean updateImages()
      This methods calls the componentImage's REPAINT method to redraw the screen.
      boolean updateImages​(boolean flag)
      This methods calls the componentImage's update method to redraw the screen.
      boolean updateImages​(ModelLUT LUTa, ModelLUT LUTb, boolean flag, int interpMode)
      This methods calls the componentImage's update method to redraw the screen.

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • serialVersionUID

        private static final long serialVersionUID
        Use serialVersionUID for interoperability.
        See Also:
        Constant Field Values

      • minInput

        private javax.swing.JTextField[] minInput
        JTextfield for minimum value of threshold.

      • maxInput

        private javax.swing.JTextField[] maxInput
        JTextfield for maximum value of threshold.

      • startInput

        private javax.swing.JTextField[] startInput
        JTextfield for start slice of the computation.

      • stopInput

        private javax.swing.JTextField[] stopInput
        JTextfield for end slice of the computation.

      • minIntensity

        private float[] minIntensity
        Minimum intensity threshold.

      • maxIntensity

        private float[] maxIntensity
        Maximum intensity threshold.

      • minInputR

        private javax.swing.JTextField[] minInputR
        JTextfield for minimum Red value of threshold.

      • maxInputR

        private javax.swing.JTextField[] maxInputR
        JTextfield for maximum Red value of threshold.

      • minInputG

        private javax.swing.JTextField[] minInputG
        JTextfield for minimum Green value of threshold.

      • maxInputG

        private javax.swing.JTextField[] maxInputG
        JTextfield for maximum Green value of threshold.

      • minInputB

        private javax.swing.JTextField[] minInputB
        JTextfield for minimum Blue value of threshold.

      • maxInputB

        private javax.swing.JTextField[] maxInputB
        JTextfield for maximum Blue value of threshold.

      • minIntensityR

        private float[] minIntensityR
        Minimum Red intensity threshold.

      • maxIntensityR

        private float[] maxIntensityR
        Maximum Red intensity threshold.

      • minIntensityG

        private float[] minIntensityG
        Minimum Green intensity threshold.

      • maxIntensityG

        private float[] maxIntensityG
        Maximum Green intensity threshold.

      • minIntensityB

        private float[] minIntensityB
        Minimum Blue intensity threshold.

      • maxIntensityB

        private float[] maxIntensityB
        Maximum Blue intensity threshold.

      • maximumCheck

        private javax.swing.JCheckBox[] maximumCheck
        CheckBox turns on/off calculating the maximum projection.

      • minimumCheck

        private javax.swing.JCheckBox[] minimumCheck
        CheckBox turns on/off calculating the minimum projection.

      • windowLabel

        private javax.swing.JLabel[] windowLabel
        Label displays the number of slices in the sliding window.

      • windowSlider

        private ViewJSlider[] windowSlider
        Slider enables user to change the size of the sliding window.

      • maximum

        private boolean[] maximum
        When true, calculate the maximum (X,Y,Z) slices.

      • minimum

        private boolean[] minimum
        When true, calculate the minimum (X,Y,Z) slices.

      • startSlice

        private int[] startSlice
        Value of the start slice for the calculation (X,Y,Z).

      • endSlice

        private int[] endSlice
        Value of the end slice for the calculation (X,Y,Z).

      • window

        private int[] window
        Value of the window size for the calculation (X,Y,Z).

      • projection

        private boolean[] projection
        When true output the X,Y,Z projections.

      • nDims

        private int nDims
        Image dimension, must be 3.

      • extents

        private int[] extents
        Image extents.

      • minSlicePreview

        private ModelImage minSlicePreview
        Single slice preview images

      • maxSlicePreview

        private ModelImage maxSlicePreview
        Single slice preview images

      • tabbedPane

        private javax.swing.JTabbedPane tabbedPane
        The tabbed pane that holds each dimension

      • minSliceWindow

        private ViewJFrameImage minSliceWindow
        Windows containing preview images

      • maxSliceWindow

        private ViewJFrameImage maxSliceWindow
        Windows containing preview images

      • cachedTab

        private int cachedTab
        Cached value of selected tab

      • slice

        private int slice
        Current slice of image

      • doPreview

        private boolean doPreview
        Whether preview mode is turned on.

      • dim

        private int dim
        Used for construction of the preview.

      • sliceSize

        private int sliceSize
        Used for construction of the preview.

      • index

        private int index
        Used for construction of the preview.

      • sliceLoc

        private int sliceLoc
        Used for construction of the preview.

      • cFactor

        private int cFactor
        Used for construction of the preview.

    • Constructor Detail

      • JDialogMaximumIntensityProjection

        public JDialogMaximumIntensityProjection()
        Empty constructor needed for dynamic instantiation (used during scripting).

      • JDialogMaximumIntensityProjection

        public JDialogMaximumIntensityProjection​(java.awt.Frame theParentFrame,
                                         ModelImage im)
        Sets the appropriate variables.
        Parameters:
        theParentFrame - Parent frame.
        im - Source image.

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Closes Dialog box when the OK button is pressed and calls the algorithm.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
        Parameters:
        event - event that triggers function

      • getPreviewExtents

        private int[] getPreviewExtents()

      • getPreviewImageType

        private int getPreviewImageType()

      • initMinPreview

        private void initMinPreview()

      • initMaxPreview

        private void initMaxPreview()

      • populatePreview

        private void populatePreview()
        Previews the currently active slice would loosely go with either min or max sliding window. Current slice is this.slice

      • getCurrentVal

        private double getCurrentVal​(double[] buffer)
        Parameters:
        buffer - image buffer
        Returns:
        map of location in image buffer to resulting location in MIP.

      • algorithmPerformed

        public void algorithmPerformed​(AlgorithmBase algorithm)
        This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to complete, so that the dialog can display the result image and/or clean up.
        Specified by:
        algorithmPerformed in interface AlgorithmInterface
        Parameters:
        algorithm - Algorithm that caused the event.

      • determineNull

        protected javax.swing.JTextField determineNull​(javax.swing.JTextField min,
                                               javax.swing.JTextField max)
        When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception. This method determines which one of the JTextFields threw the null pointer Exception.
        Parameters:
        min - one of the JTextFields the threw the null exception.
        max - one of the JTextFields the threw the null exception.
        Returns:
        either min or max.

      • setMin

        public void setMin​(int i,
                   float x)
        Sets the minimum value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        x - Value to set minimum value to.

      • setMax

        public void setMax​(int i,
                   float x)
        Sets the maximum value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        x - Value to set maximum value to.

      • setMinR

        public void setMinR​(int i,
                    float minR)
        Sets the minimum Red value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        minR - Value to set minimum Red value to.

      • setMaxR

        public void setMaxR​(int i,
                    float maxR)
        Sets the maximum Red value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        maxR - Value to set maximum Red value to.

      • setMinG

        public void setMinG​(int i,
                    float minG)
        Sets the minimum Green value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        minG - Value to set minimum Green value to.

      • setMaxG

        public void setMaxG​(int i,
                    float maxG)
        Sets the maximum Green value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        maxG - Value to set maximum Green value to.

      • setMinB

        public void setMinB​(int i,
                    float minB)
        Sets the minimum Blue value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        minB - Value to set minimum Blue value to.

      • setMaxB

        public void setMaxB​(int i,
                    float maxB)
        Sets the maximumBlue value for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        maxB - Value to set maximum Blue value to.

      • setStartSlice

        public void setStartSlice​(int i,
                          int start)
        Sets the start slice for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        start - value.

      • setEndSlice

        public void setEndSlice​(int i,
                        int end)
        Sets the end slice for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        end - value.

      • setWindow

        public void setWindow​(int i,
                      int size)
        Sets the window size for X, Y, or Z processing.
        Parameters:
        i - index (X, Y, or Z)
        size - , new window size.

      • setComputeMax

        public void setComputeMax​(int i,
                          boolean compute)
        Turns computing the maximum projection on for X, Y, or Z processing.
        Parameters:
        i - index representing (X,Y,Z) projection.
        compute - when true the computation is turned on.

      • setComputeMin

        public void setComputeMin​(int i,
                          boolean compute)
        Turns computing the minimum projection on for X, Y, or Z processing.
        Parameters:
        i - index representing (X,Y,Z) projection.
        compute - when true the computation is turned on.

      • setGUIFromParams

        protected void setGUIFromParams()
        Set the dialog GUI using the script parameters while running this algorithm as part of a script.
        Specified by:
        setGUIFromParams in class JDialogScriptableBase

      • initData

        private void initData()
        Allocates local memory.

      • init

        private void init()
        Initializes the GUI components and places them in dialog.

      • setVariables

        private boolean setVariables()
        Use the GUI results to set up the variables needed to run the algorithm.
        Returns:
        true if parameters set successfully, false otherwise.

      • stateChanged

        public void stateChanged​(javax.swing.event.ChangeEvent e)
        Specified by:
        stateChanged in interface javax.swing.event.ChangeListener

      • destroyPreview

        private void destroyPreview()

      • keyTyped

        public void keyTyped​(java.awt.event.KeyEvent e)
        Specified by:
        keyTyped in interface java.awt.event.KeyListener

      • keyPressed

        public void keyPressed​(java.awt.event.KeyEvent e)
        Specified by:
        keyPressed in interface java.awt.event.KeyListener

      • keyReleased

        public void keyReleased​(java.awt.event.KeyEvent e)
        Specified by:
        keyReleased in interface java.awt.event.KeyListener

      • focusLost

        public void focusLost​(java.awt.event.FocusEvent e)
        Description copied from class: JDialogBase
        Unchanged.
        Specified by:
        focusLost in interface java.awt.event.FocusListener
        Overrides:
        focusLost in class JDialogBase
        Parameters:
        e - FocusEvent

      • getActionMetadata

        public ActionMetadata getActionMetadata()
        Description copied from interface: ActionDiscovery
        Return meta-information about this discoverable action for categorization and labeling purposes.
        Specified by:
        getActionMetadata in interface ActionDiscovery
        Returns:
        Metadata for this action.

      • createInputParameters

        public ParameterTable createInputParameters()
        Description copied from interface: ActionDiscovery
        Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in #setGUIFromParams()).
        Specified by:
        createInputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the inputs of this algorithm.

      • createOutputParameters

        public ParameterTable createOutputParameters()
        Description copied from interface: ActionDiscovery
        Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
        Specified by:
        createOutputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the outputs of this algorithm.

      • getOutputImageName

        public java.lang.String getOutputImageName​(java.lang.String imageParamName)
        Description copied from interface: ActionDiscovery
        Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
        Specified by:
        getOutputImageName in interface ActionDiscovery
        Parameters:
        imageParamName - The output image parameter label for which to get the image name.
        Returns:
        The image name of the requested output image parameter label.

      • isActionComplete

        public boolean isActionComplete()
        Description copied from interface: ActionDiscovery
        Returns whether the action has successfully completed its execution.
        Specified by:
        isActionComplete in interface ActionDiscovery
        Returns:
        True, if the action is complete. False, if the action failed or is still running.

      • updateImageExtents

        public boolean updateImageExtents()
        Description copied from interface: ViewImageUpdateInterface
        This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.
        Specified by:
        updateImageExtents in interface ViewImageUpdateInterface
        Returns:
        boolean confirming successful update

      • updateImages

        public boolean updateImages()
        Description copied from interface: ViewImageUpdateInterface
        This methods calls the componentImage's REPAINT method to redraw the screen. Without LUT changes or image changes
        Specified by:
        updateImages in interface ViewImageUpdateInterface
        Returns:
        boolean confirming successful update

      • updateImages

        public boolean updateImages​(boolean flag)
        Description copied from interface: ViewImageUpdateInterface
        This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
        Specified by:
        updateImages in interface ViewImageUpdateInterface
        Parameters:
        flag - forces show to re import image and calc. java image
        Returns:
        boolean confirming successful update

      • updateImages

        public boolean updateImages​(ModelLUT LUTa,
                            ModelLUT LUTb,
                            boolean flag,
                            int interpMode)
        Description copied from interface: ViewImageUpdateInterface
        This methods calls the componentImage's update method to redraw the screen.
        Specified by:
        updateImages in interface ViewImageUpdateInterface
        Parameters:
        LUTa - LUT used to update imageA
        LUTb - LUT used to update imageB
        flag - forces show to re import image and calc. java image
        interpMode - image interpolation method (Nearest or Smooth)
        Returns:
        boolean confirming a successful update