Package gov.nih.mipav.view.dialogs

Class JDialogMaximumIntensityProjection

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogScriptableBase

gov.nih.mipav.view.dialogs.JDialogMaximumIntensityProjection

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ViewImageUpdateInterface, ActionListener, FocusListener, ItemListener, KeyListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

public class JDialogMaximumIntensityProjection
extends JDialogScriptableBase
implements ActionDiscovery, AlgorithmInterface, ChangeListener, KeyListener, ViewImageUpdateInterface

Dialog to call Maximum Intensity Projection. It should be noted that algorithms are executed in own thread. The Maximum Intensity Projection algorithm computes the maximum or the minimum intensity along each projection of a 3D image. The user can specify theshold values in image intensity for the calculation, as well as which projection to compute along (X, Y, or Z), the start and end slice used in the calculation, the size of a sliding 'window' in number of slices to use in the calculation, and whether to calculate the minimum, maximum or both projections. When the sliding window size is not equal to the number of slices used in the calculation the output is a 3D image, where each slice of the output image is computed using the number of slices in the sliding window. When the sliding window size is equal to the number of slices used in the calculation the output image is a 2D image.

Author:

joshim2

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private int	cachedTab	Cached value of selected tab
private int	cFactor	Used for construction of the preview.
private int	dim	Used for construction of the preview.
private boolean	doPreview	Whether preview mode is turned on.
private int[]	endSlice	Value of the end slice for the calculation (X,Y,Z).
private int[]	extents	Image extents.
private ModelImage	image	Source Image.
private int	index	Used for construction of the preview.
private boolean[]	maximum	When true, calculate the maximum (X,Y,Z) slices.
private JCheckBox[]	maximumCheck	CheckBox turns on/off calculating the maximum projection.
private JTextField[]	maxInput	JTextfield for maximum value of threshold.
private JTextField[]	maxInputB	JTextfield for maximum Blue value of threshold.
private JTextField[]	maxInputG	JTextfield for maximum Green value of threshold.
private JTextField[]	maxInputR	JTextfield for maximum Red value of threshold.
private float[]	maxIntensity	Maximum intensity threshold.
private float[]	maxIntensityB	Maximum Blue intensity threshold.
private float[]	maxIntensityG	Maximum Green intensity threshold.
private float[]	maxIntensityR	Maximum Red intensity threshold.
private ModelImage	maxSlicePreview	Single slice preview images
private ViewJFrameImage	maxSliceWindow	Windows containing preview images
private boolean[]	minimum	When true, calculate the minimum (X,Y,Z) slices.
private JCheckBox[]	minimumCheck	CheckBox turns on/off calculating the minimum projection.
private JTextField[]	minInput	JTextfield for minimum value of threshold.
private JTextField[]	minInputB	JTextfield for minimum Blue value of threshold.
private JTextField[]	minInputG	JTextfield for minimum Green value of threshold.
private JTextField[]	minInputR	JTextfield for minimum Red value of threshold.
private float[]	minIntensity	Minimum intensity threshold.
private float[]	minIntensityB	Minimum Blue intensity threshold.
private float[]	minIntensityG	Minimum Green intensity threshold.
private float[]	minIntensityR	Minimum Red intensity threshold.
private ModelImage	minSlicePreview	Single slice preview images
private ViewJFrameImage	minSliceWindow	Windows containing preview images
private int	nDims	Image dimension, must be 3.
private static final String	PREV_OFF
private static final String	PREV_ON
private static final String	PREVIEW
private boolean[]	projection	When true output the X,Y,Z projections.
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private int	slice	Current slice of image
private int	sliceLoc	Used for construction of the preview.
private int	sliceSize	Used for construction of the preview.
private JTextField[]	startInput	JTextfield for start slice of the computation.
private int[]	startSlice	Value of the start slice for the calculation (X,Y,Z).
private JTextField[]	stopInput	JTextfield for end slice of the computation.
private JTabbedPane	tabbedPane	The tabbed pane that holds each dimension
private int[]	window	Value of the window size for the calculation (X,Y,Z).
private JLabel[]	windowLabel	Label displays the number of slices in the sliding window.
private ViewJSlider[]	windowSlider	Slider enables user to change the size of the sliding window.

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogMaximumIntensityProjection()	Empty constructor needed for dynamic instantiation (used during scripting).
JDialogMaximumIntensityProjection(Frame theParentFrame, ModelImage im)	Sets the appropriate variables.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Closes Dialog box when the OK button is pressed and calls the algorithm.
void	algorithmPerformed(AlgorithmBase algorithm)	This method is required if the AlgorithmPerformed interface is implemented.
void	callAlgorithm()	Calls the algorithm.
ParameterTable	createInputParameters()	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in invalid reference #setGUIFromParams() ).
ParameterTable	createOutputParameters()	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
private void	destroyPreview()
protected JTextField	determineNull(JTextField min, JTextField max)	When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception.
void	focusLost(FocusEvent e)	Unchanged.
ActionMetadata	getActionMetadata()	Return meta-information about this discoverable action for categorization and labeling purposes.
private double	getCurrentVal(double[] buffer)
String	getOutputImageName(String imageParamName)	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
private int[]	getPreviewExtents()
private int	getPreviewImageType()
private void	init()	Initializes the GUI components and places them in dialog.
private void	initData()	Allocates local memory.
private void	initMaxPreview()
private void	initMinPreview()
boolean	isActionComplete()	Returns whether the action has successfully completed its execution.
void	keyPressed(KeyEvent e)
void	keyReleased(KeyEvent e)
void	keyTyped(KeyEvent e)
private void	populatePreview()	Previews the currently active slice would loosely go with either min or max sliding window.
void	setComputeMax(int i, boolean compute)	Turns computing the maximum projection on for X, Y, or Z processing.
void	setComputeMin(int i, boolean compute)	Turns computing the minimum projection on for X, Y, or Z processing.
void	setEndSlice(int i, int end)	Sets the end slice for X, Y, or Z processing.
protected void	setGUIFromParams()	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
void	setMax(int i, float x)	Sets the maximum value for X, Y, or Z processing.
void	setMaxB(int i, float maxB)	Sets the maximumBlue value for X, Y, or Z processing.
void	setMaxG(int i, float maxG)	Sets the maximum Green value for X, Y, or Z processing.
void	setMaxR(int i, float maxR)	Sets the maximum Red value for X, Y, or Z processing.
void	setMin(int i, float x)	Sets the minimum value for X, Y, or Z processing.
void	setMinB(int i, float minB)	Sets the minimum Blue value for X, Y, or Z processing.
void	setMinG(int i, float minG)	Sets the minimum Green value for X, Y, or Z processing.
void	setMinR(int i, float minR)	Sets the minimum Red value for X, Y, or Z processing.
void	setSlice(int slice)	setSlice.
void	setStartSlice(int i, int start)	Sets the start slice for X, Y, or Z processing.
void	setTimeSlice(int tSlice)	setTimeSlice.
private boolean	setVariables()	Use the GUI results to set up the variables needed to run the algorithm.
void	setWindow(int i, int size)	Sets the window size for X, Y, or Z processing.
void	stateChanged(ChangeEvent e)
protected void	storeParamsFromGUI()	Record the parameters just used to run this algorithm in a script.
boolean	updateImageExtents()	This methods calls the componentImage's REPAINT method to redraw the screen.
boolean	updateImages()	This methods calls the componentImage's REPAINT method to redraw the screen.
boolean	updateImages(boolean flag)	This methods calls the componentImage's update method to redraw the screen.
boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean flag, int interpMode)	This methods calls the componentImage's update method to redraw the screen.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

scriptRun

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

PREVIEW

private static final String PREVIEW

See Also:

• Constant Field Values

PREV_ON

private static final String PREV_ON

See Also:

• Constant Field Values

PREV_OFF

private static final String PREV_OFF

See Also:

• Constant Field Values

image

private ModelImage image

Source Image.

minInput

private JTextField[] minInput

JTextfield for minimum value of threshold.

maxInput

private JTextField[] maxInput

JTextfield for maximum value of threshold.

startInput

private JTextField[] startInput

JTextfield for start slice of the computation.

stopInput

private JTextField[] stopInput

JTextfield for end slice of the computation.

minIntensity

private float[] minIntensity

Minimum intensity threshold.

maxIntensity

private float[] maxIntensity

Maximum intensity threshold.

minInputR

private JTextField[] minInputR

JTextfield for minimum Red value of threshold.

maxInputR

private JTextField[] maxInputR

JTextfield for maximum Red value of threshold.

minInputG

private JTextField[] minInputG

JTextfield for minimum Green value of threshold.

maxInputG

private JTextField[] maxInputG

JTextfield for maximum Green value of threshold.

minInputB

private JTextField[] minInputB

JTextfield for minimum Blue value of threshold.

maxInputB

private JTextField[] maxInputB

JTextfield for maximum Blue value of threshold.

minIntensityR

private float[] minIntensityR

Minimum Red intensity threshold.

maxIntensityR

private float[] maxIntensityR

Maximum Red intensity threshold.

minIntensityG

private float[] minIntensityG

Minimum Green intensity threshold.

maxIntensityG

private float[] maxIntensityG

Maximum Green intensity threshold.

minIntensityB

private float[] minIntensityB

Minimum Blue intensity threshold.

maxIntensityB

private float[] maxIntensityB

Maximum Blue intensity threshold.

maximumCheck

private JCheckBox[] maximumCheck

CheckBox turns on/off calculating the maximum projection.

minimumCheck

private JCheckBox[] minimumCheck

CheckBox turns on/off calculating the minimum projection.

windowLabel

private JLabel[] windowLabel

Label displays the number of slices in the sliding window.

windowSlider

private ViewJSlider[] windowSlider

Slider enables user to change the size of the sliding window.

maximum

private boolean[] maximum

When true, calculate the maximum (X,Y,Z) slices.

minimum

private boolean[] minimum

When true, calculate the minimum (X,Y,Z) slices.

startSlice

private int[] startSlice

Value of the start slice for the calculation (X,Y,Z).

endSlice

private int[] endSlice

Value of the end slice for the calculation (X,Y,Z).

window

private int[] window

Value of the window size for the calculation (X,Y,Z).

projection

private boolean[] projection

When true output the X,Y,Z projections.

nDims

private int nDims

Image dimension, must be 3.

extents

private int[] extents

Image extents.

minSlicePreview

private ModelImage minSlicePreview

Single slice preview images

maxSlicePreview

private ModelImage maxSlicePreview

Single slice preview images

tabbedPane

private JTabbedPane tabbedPane

The tabbed pane that holds each dimension

minSliceWindow

private ViewJFrameImage minSliceWindow

Windows containing preview images

maxSliceWindow

private ViewJFrameImage maxSliceWindow

Windows containing preview images

cachedTab

private int cachedTab

Cached value of selected tab

slice

private int slice

Current slice of image

doPreview

private boolean doPreview

Whether preview mode is turned on.

dim

private int dim

Used for construction of the preview.

sliceSize

private int sliceSize

Used for construction of the preview.

index

private int index

Used for construction of the preview.

sliceLoc

private int sliceLoc

Used for construction of the preview.

cFactor

private int cFactor

Used for construction of the preview.

Constructor Details

JDialogMaximumIntensityProjection

public JDialogMaximumIntensityProjection()

Empty constructor needed for dynamic instantiation (used during scripting).

JDialogMaximumIntensityProjection

public JDialogMaximumIntensityProjection(Frame theParentFrame,
 ModelImage im)

Sets the appropriate variables.

Parameters:

theParentFrame - Parent frame.

im - Source image.

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Closes Dialog box when the OK button is pressed and calls the algorithm.

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class JDialogBase

Parameters:

event - event that triggers function

getPreviewExtents

private int[] getPreviewExtents()

getPreviewImageType

private int getPreviewImageType()

initMinPreview

private void initMinPreview()

initMaxPreview

private void initMaxPreview()

populatePreview

private void populatePreview()

Previews the currently active slice would loosely go with either min or max sliding window. Current slice is this.slice

getCurrentVal

private double getCurrentVal(double[] buffer)

Parameters:

buffer - image buffer

Returns:

map of location in image buffer to resulting location in MIP.

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to complete, so that the dialog can display the result image and/or clean up.

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - Algorithm that caused the event.

callAlgorithm

public void callAlgorithm()

Calls the algorithm.

Specified by:

callAlgorithm in class JDialogScriptableBase

determineNull

protected JTextField determineNull(JTextField min,
 JTextField max)

When one of the text inputs has been left blank, trying to convert them to ints results in throwing a null pointer exception. This method determines which one of the JTextFields threw the null pointer Exception.

Parameters:

min - one of the JTextFields the threw the null exception.

max - one of the JTextFields the threw the null exception.

Returns:

either min or max.

setMin

public void setMin(int i,
 float x)

Sets the minimum value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

x - Value to set minimum value to.

setMax

public void setMax(int i,
 float x)

Sets the maximum value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

x - Value to set maximum value to.

setMinR

public void setMinR(int i,
 float minR)

Sets the minimum Red value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

minR - Value to set minimum Red value to.

setMaxR

public void setMaxR(int i,
 float maxR)

Sets the maximum Red value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

maxR - Value to set maximum Red value to.

setMinG

public void setMinG(int i,
 float minG)

Sets the minimum Green value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

minG - Value to set minimum Green value to.

setMaxG

public void setMaxG(int i,
 float maxG)

Sets the maximum Green value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

maxG - Value to set maximum Green value to.

setMinB

public void setMinB(int i,
 float minB)

Sets the minimum Blue value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

minB - Value to set minimum Blue value to.

setMaxB

public void setMaxB(int i,
 float maxB)

Sets the maximumBlue value for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

maxB - Value to set maximum Blue value to.

setStartSlice

public void setStartSlice(int i,
 int start)

Sets the start slice for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

start - value.

setEndSlice

public void setEndSlice(int i,
 int end)

Sets the end slice for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

end - value.

setWindow

public void setWindow(int i,
 int size)

Sets the window size for X, Y, or Z processing.

Parameters:

i - index (X, Y, or Z)

size - , new window size.

setComputeMax

public void setComputeMax(int i,
 boolean compute)

Turns computing the maximum projection on for X, Y, or Z processing.

Parameters:

i - index representing (X,Y,Z) projection.

compute - when true the computation is turned on.

setComputeMin

public void setComputeMin(int i,
 boolean compute)

Turns computing the minimum projection on for X, Y, or Z processing.

Parameters:

i - index representing (X,Y,Z) projection.

compute - when true the computation is turned on.

setGUIFromParams

protected void setGUIFromParams()

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

Specified by:

setGUIFromParams in class JDialogScriptableBase

storeParamsFromGUI

protected void storeParamsFromGUI()
                           throws ParserException

Record the parameters just used to run this algorithm in a script.

Specified by:

storeParamsFromGUI in class JDialogScriptableBase

Throws:

ParserException - If there is a problem creating/recording the new parameters.

initData

private void initData()

Allocates local memory.

init

private void init()

Initializes the GUI components and places them in dialog.

setVariables

private boolean setVariables()

Use the GUI results to set up the variables needed to run the algorithm.

Returns:

true if parameters set successfully, false otherwise.

stateChanged

public void stateChanged(ChangeEvent e)

Specified by:

stateChanged in interface ChangeListener

destroyPreview

private void destroyPreview()

keyTyped

public void keyTyped(KeyEvent e)

Specified by:

keyTyped in interface KeyListener

keyPressed

public void keyPressed(KeyEvent e)

Specified by:

keyPressed in interface KeyListener

keyReleased

public void keyReleased(KeyEvent e)

Specified by:

keyReleased in interface KeyListener

focusLost

public void focusLost(FocusEvent e)

Description copied from class: JDialogBase

Unchanged.

Specified by:

focusLost in interface FocusListener

Overrides:

focusLost in class JDialogBase

Parameters:

e - FocusEvent

getActionMetadata

public ActionMetadata getActionMetadata()

Description copied from interface: ActionDiscovery

Return meta-information about this discoverable action for categorization and labeling purposes.

Specified by:

getActionMetadata in interface ActionDiscovery

Returns:

Metadata for this action.

createInputParameters

public ParameterTable createInputParameters()

Description copied from interface: ActionDiscovery

Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in

invalid reference

#setGUIFromParams()

).

Specified by:

createInputParameters in interface ActionDiscovery

Returns:

A parameter table listing the inputs of this algorithm.

createOutputParameters

public ParameterTable createOutputParameters()

Description copied from interface: ActionDiscovery

Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).

Specified by:

createOutputParameters in interface ActionDiscovery

Returns:

A parameter table listing the outputs of this algorithm.

getOutputImageName

public String getOutputImageName(String imageParamName)

Description copied from interface: ActionDiscovery

Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).

Specified by:

getOutputImageName in interface ActionDiscovery

Parameters:

imageParamName - The output image parameter label for which to get the image name.

Returns:

The image name of the requested output image parameter label.

isActionComplete

public boolean isActionComplete()

Description copied from interface: ActionDiscovery

Returns whether the action has successfully completed its execution.

Specified by:

isActionComplete in interface ActionDiscovery

Returns:

True, if the action is complete. False, if the action failed or is still running.

setSlice

public void setSlice(int slice)

Description copied from interface: ViewImageUpdateInterface

setSlice.

Specified by:

setSlice in interface ViewImageUpdateInterface

Parameters:

slice - Current slice

setTimeSlice

public void setTimeSlice(int tSlice)

Description copied from interface: ViewImageUpdateInterface

setTimeSlice.

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Parameters:

tSlice - Current time volume

updateImageExtents

public boolean updateImageExtents()

Description copied from interface: ViewImageUpdateInterface

This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Returns:

boolean confirming successful update

updateImages

public boolean updateImages()

Description copied from interface: ViewImageUpdateInterface

This methods calls the componentImage's REPAINT method to redraw the screen. Without LUT changes or image changes

Specified by:

updateImages in interface ViewImageUpdateInterface

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(boolean flag)

Description copied from interface: ViewImageUpdateInterface

This methods calls the componentImage's update method to redraw the screen. Without LUT changes.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

flag - forces show to re import image and calc. java image

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean flag,
 int interpMode)

Description copied from interface: ViewImageUpdateInterface

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

flag - forces show to re import image and calc. java image

interpMode - image interpolation method (Nearest or Smooth)

Returns:

boolean confirming a successful update