Package gov.nih.mipav.model.algorithms

Class AlgorithmEdgeDetection3D

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.AlgorithmEdgeDetection3D

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmEdgeDetection3D
extends AlgorithmBase

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	anglesRequired
private boolean	componentsRequired
private double	dx
private double	dy
private double	dz
private double[][][]	FMAX
private double[][][]	FX
private double[][][]	FY
private double[][][]	FZ
private double	L
private boolean	magnitudeRequired
private int	nx
private int	ny
private int	nz
private double[][][]	phiMAX
private double[][][]	thetaMAX
(package private) double	threshold

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmEdgeDetection3D()	AlgorithmEdgeDetection3D - default constructor.
AlgorithmEdgeDetection3D(ModelImage destImg, ModelImage srcImg, double dx, double dy, double dz, int nx, int ny, int nz, double L, double threshold, boolean componentsRequired, boolean anglesRequired, boolean magnitudeRequired)	AlgorithmEdgeDetection3D.

Method Summary

Modifier and Type	Method	Description
void	finalize()	finalize -
double[][][]	getMagnitude()
double[][][]	getPhi()
double[][][]	getTheta()
double[][][]	getXComponent()
double[][][]	getYComponent()
double[][][]	getZComponent()
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

dx

private double dx

dy

private double dy

dz

private double dz

nx

private int nx

ny

private int ny

nz

private int nz

L

private double L

threshold

double threshold

componentsRequired

private boolean componentsRequired

anglesRequired

private boolean anglesRequired

magnitudeRequired

private boolean magnitudeRequired

FX

private double[][][] FX

FY

private double[][][] FY

FZ

private double[][][] FZ

thetaMAX

private double[][][] thetaMAX

phiMAX

private double[][][] phiMAX

FMAX

private double[][][] FMAX

Constructor Detail

AlgorithmEdgeDetection3D

public AlgorithmEdgeDetection3D()

AlgorithmEdgeDetection3D - default constructor.

AlgorithmEdgeDetection3D

public AlgorithmEdgeDetection3D(ModelImage destImg,
                                ModelImage srcImg,
                                double dx,
                                double dy,
                                double dz,
                                int nx,
                                int ny,
                                int nz,
                                double L,
                                double threshold,
                                boolean componentsRequired,
                                boolean anglesRequired,
                                boolean magnitudeRequired)

AlgorithmEdgeDetection3D.

Parameters:

destImg - destination image

srcImg - source image

dx - x length of the prism over which the data is integrated

dy - y length of the prism over which the data is integrated

dz - z length of the prism over which the data is integrated

nx - mask x dimension

ny - mask y dimension

nz - mask z dimension

L - Neighborhood size for the directional gradient averaging

threshold - (FMAX/largestFMAX) must be >= threshold to be made an edge

componentsRequired - If true, keep FX, FY, and FZ arrays.

anglesRequired - If true, keep thetaMAX and phiMAX arrays.

magnitudeRequired - If true, keep FMAX array.

Method Detail

finalize

public void finalize()

finalize -

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

getXComponent

public double[][][] getXComponent()

getYComponent

public double[][][] getYComponent()

getZComponent

public double[][][] getZComponent()

getTheta

public double[][][] getTheta()

getPhi

public double[][][] getPhi()

getMagnitude

public double[][][] getMagnitude()