java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.filters.AlgorithmBSplineControlPointImageFilter

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmBSplineControlPointImageFilter
extends AlgorithmBase
```
Version:

0.1 April 28, 2014

Author:

William Gandler This a a port of itkBSplineControlPointImageFilter.txx from the itk package. Here is the original itk header from the itkBSplineControlPointImageFIlter.h file: Program: Insight Segmentation & Registration Toolkit Module: $RCSfile: itkBSplineControlPointImageFilter.h,v $ Language: C++ Date: $Date: 2009/05/04 14:10:34 $ Version: $Revision: 1.5 $ Copyright (c) Insight Software Consortium. All rights reserved. See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. The original code was contributed in the Insight Journal paper: "N-D C^k B-Spline Scattered Data Approximation" by Nicholas J. Tustison, James C. Gee http://hdl.handle.net/1926/140 http://www.insight-journal.org/browse/publication/57

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private double`	`BSplineEpsilon`
`private int[]`	`closeDimension`
`private double[][]`	`direction`
`private boolean`	`doMultiLevel`
`private double`	`epsilon`
`private int[]`	`extents`
`private int`	`extentsLength`
`private int`	`extentsSlice`
`private ModelImage`	`inputImage`
`private CoxDeBoorBSplineKernelFunction[]`	`kernel`
`private BSplineKernelFunction`	`kernelOrder0`
`private BSplineKernelFunction`	`kernelOrder1`
`private BSplineKernelFunction`	`kernelOrder2`
`private BSplineKernelFunction`	`kernelOrder3`
`private int`	`maximumNumberOfLevels`
`private int`	`nDims`
`private int[]`	`numberOfControlPoints`
`private int[]`	`numberOfLevels`
`private float[]`	`origin`
`private double[]`	`outputBuffer`
`private ModelImage`	`psiLattice`
`private Jama.Matrix[]`	`refinedLatticeCoefficients`
`private float[]`	`resolutions`
`private int[]`	`splineOrder`
`private int`	`xyzExtents`

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor Description

AlgorithmBSplineControlPointImageFilter(int nDims)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`beforeThreadedGenerateData()`
`private void`	`collapsePhiLattice(double[] lattice, int[] latticeIndex, double[] collapsedLattice, int[] collapsedLatticeIndex, double u, int dimension)`
`void`	`finalize()`	Prepares this class for destruction.
`void`	`generateData()`
`double[]`	`getOutputBuffer()`
`ModelImage`	`refineControlPointLattice(int[] numberOfLevels)`
`void`	`runAlgorithm()`	Starts the program.
`void`	`setDirection(double[][] direction)`
`void`	`setExtents(int[] extents)`
`void`	`setInput(ModelImage inputImage)`
`void`	`setNumberOfLevels(int[] levels)`
`void`	`setOrigin(float[] origin)`
`void`	`setResolutions(float[] resolutions)`
`void`	`setSplineOrder(int[] order)`
`private void`	`threadedGenerateData()`

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

nDims
```
private int nDims
```

splineOrder
```
private int[] splineOrder
```

doMultiLevel
```
private boolean doMultiLevel
```

maximumNumberOfLevels
```
private int maximumNumberOfLevels
```

origin
```
private float[] origin
```

resolutions
```
private float[] resolutions
```

extents
```
private int[] extents
```

direction
```
private double[][] direction
```

numberOfControlPoints
```
private int[] numberOfControlPoints
```

kernel

private CoxDeBoorBSplineKernelFunction[] kernel

kernelOrder0

private BSplineKernelFunction kernelOrder0

kernelOrder1

private BSplineKernelFunction kernelOrder1

kernelOrder2

private BSplineKernelFunction kernelOrder2

kernelOrder3

private BSplineKernelFunction kernelOrder3

numberOfLevels
```
private int[] numberOfLevels
```

closeDimension
```
private int[] closeDimension
```

epsilon
```
private double epsilon
```

BSplineEpsilon
```
private double BSplineEpsilon
```

inputImage
```
private ModelImage inputImage
```

extentsLength
```
private int extentsLength
```

extentsSlice
```
private int extentsSlice
```

xyzExtents
```
private int xyzExtents
```

outputBuffer
```
private double[] outputBuffer
```

psiLattice
```
private ModelImage psiLattice
```

refinedLatticeCoefficients

private Jama.Matrix[] refinedLatticeCoefficients

Constructor Detail

AlgorithmBSplineControlPointImageFilter

public AlgorithmBSplineControlPointImageFilter(int nDims)

Method Detail

finalize
```
public void finalize()
```
Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

setInput

public void setInput(ModelImage inputImage)

getOutputBuffer
```
public double[] getOutputBuffer()
```

setOrigin

public void setOrigin(float[] origin)

setResolutions

public void setResolutions(float[] resolutions)

setDirection

public void setDirection(double[][] direction)

setExtents

public void setExtents(int[] extents)

generateData
```
public void generateData()
```

beforeThreadedGenerateData

private void beforeThreadedGenerateData()

threadedGenerateData
```
private void threadedGenerateData()
```

collapsePhiLattice

private void collapsePhiLattice(double[] lattice,
                                int[] latticeIndex,
                                double[] collapsedLattice,
                                int[] collapsedLatticeIndex,
                                double u,
                                int dimension)

setNumberOfLevels

public void setNumberOfLevels(int[] levels)

setSplineOrder

public void setSplineOrder(int[] order)

refineControlPointLattice

public ModelImage refineControlPointLattice(int[] numberOfLevels)

runAlgorithm
```
public void runAlgorithm()
```
Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

Class AlgorithmBSplineControlPointImageFilter

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

nDims

splineOrder

doMultiLevel

maximumNumberOfLevels

origin

resolutions

extents

direction

numberOfControlPoints

kernel

kernelOrder0

kernelOrder1

kernelOrder2

kernelOrder3

numberOfLevels

closeDimension

epsilon

BSplineEpsilon

inputImage

extentsLength

extentsSlice

xyzExtents

outputBuffer

psiLattice

refinedLatticeCoefficients

Constructor Detail

AlgorithmBSplineControlPointImageFilter

Method Detail

finalize

setInput

getOutputBuffer

setOrigin

setResolutions

setDirection

setExtents

generateData

beforeThreadedGenerateData

threadedGenerateData

collapsePhiLattice

setNumberOfLevels

setSplineOrder

refineControlPointLattice

runAlgorithm