Package gov.nih.mipav.model.file

Class FileInfoOME.OME.Image

java.lang.Object

gov.nih.mipav.model.file.FileInfoOME.OME.Image

Enclosing class:

FileInfoOME.OME

public class FileInfoOME.OME.Image
extends Object

DOCUMENT ME!

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	FileInfoOME.OME.Image.ChannelInfo	DOCUMENT ME!
class	FileInfoOME.OME.Image.Data	DOCUMENT ME!
class	FileInfoOME.OME.Image.DisplayOptions	DOCUMENT ME!
class	FileInfoOME.OME.Image.Feature	DOCUMENT ME!
class	FileInfoOME.OME.Image.InstrumentRef	DOCUMENT ME!
class	FileInfoOME.OME.Image.PlateInfo	DOCUMENT ME!
class	FileInfoOME.OME.Image.StageLabel	DOCUMENT ME!

Field Summary

Fields

Modifier and Type	Field	Description
private Float	airPressure
private Vector<FileInfoOME.OME.Image.ChannelInfo>	channelInfos	DOCUMENT ME!
private Float	cO2Percent
private String	creationDate	Elements.
private FileInfoOME.OME.Image.Data	data	DOCUMENT ME!
private Vector<Integer>	datasetRefs	DOCUMENT ME!
private String	derivedImage
private String	description
private FileInfoOME.OME.Image.DisplayOptions	displayOptions	DOCUMENT ME!
private FileInfoOME.ExperimentRef	experimentRef
private FileInfoOME.OME.GroupRef	groupRef
private String	guid	Attributes.
private Float	humidity	DOCUMENT ME!
private String	imageType
private FileInfoOME.OME.Image.InstrumentRef	instrumentRef
private String	mimeType
private String	name
private Integer	numChannels
private Integer	numTimes
private Float	pixelSizeX	DOCUMENT ME!
private Float	pixelSizeY	DOCUMENT ME!
private Float	pixelSizeZ	DOCUMENT ME!
private FileInfoOME.OME.Image.PlateInfo	plateInfo	DOCUMENT ME!
private Integer	sizeX
private Integer	sizeY
private Integer	sizeZ
private FileInfoOME.OME.Image.StageLabel	stageLabel
private Float	temperature	For Imaging Environment.
private URI	thumbnail
private Float	timeIncrement	DOCUMENT ME!
private Integer	waveIncrement
private Integer	waveStart

Constructor Summary

Constructors

Constructor	Description
Image(String guid, String type, String name, Integer sizeX, Integer sizeY, Integer sizeZ, Integer numChannels, Integer numTimes, Float pSizeX, Float pSizeY, Float pSizeZ, Float ti, Integer ws, Integer wi)	Creates a new Image object.

Method Summary

Modifier and Type	Method	Description
void	addChannelInfo(String name, Integer spp, String illType, Integer phs, String photoInt, String mode, String contrastMethod, Integer exWave, Integer emWave, String fluor, Float ndFilter)	DOCUMENT ME!
void	addDatasetRef(Integer datasetID)	DOCUMENT ME!
FileInfoOME.OME.Image.ChannelInfo	getCurrentChannelInfo()	DOCUMENT ME!
FileInfoOME.OME.Image.Data	getData()	DOCUMENT ME!
FileInfoOME.OME.Image.DisplayOptions	getDisplayOptions()	DOCUMENT ME!
FileInfoOME.OME.Image.PlateInfo	getPlateInfo()	DOCUMENT ME!
void	setAirPressure(Float ap)	DOCUMENT ME!
void	setCO2Percent(Float cO2)	DOCUMENT ME!
void	setCreationDate(String date)	DOCUMENT ME!
void	setData(String dimOrd, String pt, Boolean bigEnd)	DOCUMENT ME!
void	setDerivedImage(String derImage)	DOCUMENT ME!
void	setDescription(String desc)	DOCUMENT ME!
void	setDisplayOptions(Float zoom)	DOCUMENT ME!
void	setExperimentRef(Integer docRef, String experimentID)	DOCUMENT ME!
void	setGroupRef(Integer id)	DOCUMENT ME!
void	setHumidity(Float hum)	DOCUMENT ME!
void	setInstrumentRef(Integer docRef, Integer instID, Integer objID)	DOCUMENT ME!
void	setMIMEType(String mime)	DOCUMENT ME!
void	setPlateInfo(Integer id)	DOCUMENT ME!
void	setStageLabel(String name, Float x, Float y, Float z)	DOCUMENT ME!
void	setTemperature(Float temp)	DOCUMENT ME!
void	setThumbnail(URI tn)	DOCUMENT ME!

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

airPressure

private Float airPressure

channelInfos

private Vector<FileInfoOME.OME.Image.ChannelInfo> channelInfos

DOCUMENT ME!

cO2Percent

private Float cO2Percent

creationDate

private String creationDate

Elements.

data

private FileInfoOME.OME.Image.Data data

DOCUMENT ME!

datasetRefs

private Vector<Integer> datasetRefs

DOCUMENT ME!

derivedImage

private String derivedImage

description

private String description

displayOptions

private FileInfoOME.OME.Image.DisplayOptions displayOptions

DOCUMENT ME!

experimentRef

private FileInfoOME.ExperimentRef experimentRef

groupRef

private FileInfoOME.OME.GroupRef groupRef

guid

private String guid

Attributes.

humidity

private Float humidity

DOCUMENT ME!

imageType

private String imageType

instrumentRef

private FileInfoOME.OME.Image.InstrumentRef instrumentRef

mimeType

private String mimeType

name

private String name

numChannels

private Integer numChannels

numTimes

private Integer numTimes

pixelSizeX

private Float pixelSizeX

DOCUMENT ME!

pixelSizeY

private Float pixelSizeY

DOCUMENT ME!

pixelSizeZ

private Float pixelSizeZ

DOCUMENT ME!

plateInfo

private FileInfoOME.OME.Image.PlateInfo plateInfo

DOCUMENT ME!

sizeX

private Integer sizeX

sizeY

private Integer sizeY

sizeZ

private Integer sizeZ

stageLabel

private FileInfoOME.OME.Image.StageLabel stageLabel

temperature

private Float temperature

For Imaging Environment.

thumbnail

private URI thumbnail

timeIncrement

private Float timeIncrement

DOCUMENT ME!

waveIncrement

private Integer waveIncrement

waveStart

private Integer waveStart

Constructor Details

Image

public Image(String guid,
 String type,
 String name,
 Integer sizeX,
 Integer sizeY,
 Integer sizeZ,
 Integer numChannels,
 Integer numTimes,
 Float pSizeX,
 Float pSizeY,
 Float pSizeZ,
 Float ti,
 Integer ws,
 Integer wi)

Creates a new Image object.

Parameters:

guid - DOCUMENT ME!

type - DOCUMENT ME!

name - DOCUMENT ME!

sizeX - DOCUMENT ME!

sizeY - DOCUMENT ME!

sizeZ - DOCUMENT ME!

numChannels - DOCUMENT ME!

numTimes - DOCUMENT ME!

pSizeX - DOCUMENT ME!

pSizeY - DOCUMENT ME!

pSizeZ - DOCUMENT ME!

ti - DOCUMENT ME!

ws - DOCUMENT ME!

wi - DOCUMENT ME!

Method Details

addChannelInfo

public void addChannelInfo(String name,
 Integer spp,
 String illType,
 Integer phs,
 String photoInt,
 String mode,
 String contrastMethod,
 Integer exWave,
 Integer emWave,
 String fluor,
 Float ndFilter)

DOCUMENT ME!

Parameters:

name - DOCUMENT ME!

spp - DOCUMENT ME!

illType - DOCUMENT ME!

phs - DOCUMENT ME!

photoInt - DOCUMENT ME!

mode - DOCUMENT ME!

contrastMethod - DOCUMENT ME!

exWave - DOCUMENT ME!

emWave - DOCUMENT ME!

fluor - DOCUMENT ME!

ndFilter - DOCUMENT ME!

addDatasetRef

public void addDatasetRef(Integer datasetID)

DOCUMENT ME!

Parameters:

datasetID - DOCUMENT ME!

getCurrentChannelInfo

public FileInfoOME.OME.Image.ChannelInfo getCurrentChannelInfo()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getData

public FileInfoOME.OME.Image.Data getData()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getDisplayOptions

public FileInfoOME.OME.Image.DisplayOptions getDisplayOptions()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getPlateInfo

public FileInfoOME.OME.Image.PlateInfo getPlateInfo()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setAirPressure

public void setAirPressure(Float ap)

DOCUMENT ME!

Parameters:

ap - DOCUMENT ME!

setCO2Percent

public void setCO2Percent(Float cO2)

DOCUMENT ME!

Parameters:

cO2 - DOCUMENT ME!

setCreationDate

public void setCreationDate(String date)

DOCUMENT ME!

Parameters:

date - DOCUMENT ME!

setData

public void setData(String dimOrd,
 String pt,
 Boolean bigEnd)

DOCUMENT ME!

Parameters:

dimOrd - DOCUMENT ME!

pt - DOCUMENT ME!

bigEnd - DOCUMENT ME!

setDerivedImage

public void setDerivedImage(String derImage)

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Parameters:

derImage - DOCUMENT ME!

setDescription

public void setDescription(String desc)

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Parameters:

desc - DOCUMENT ME!

setDisplayOptions

public void setDisplayOptions(Float zoom)

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Parameters:

zoom - DOCUMENT ME!

setExperimentRef

public void setExperimentRef(Integer docRef,
 String experimentID)

DOCUMENT ME!

Parameters:

docRef - DOCUMENT ME!

experimentID - DOCUMENT ME!

setGroupRef

public void setGroupRef(Integer id)

DOCUMENT ME!

Parameters:

id - DOCUMENT ME!

setHumidity

public void setHumidity(Float hum)

DOCUMENT ME!

Parameters:

hum - DOCUMENT ME!

setInstrumentRef

public void setInstrumentRef(Integer docRef,
 Integer instID,
 Integer objID)

DOCUMENT ME!

Parameters:

docRef - DOCUMENT ME!

instID - DOCUMENT ME!

objID - DOCUMENT ME!

setMIMEType

public void setMIMEType(String mime)

DOCUMENT ME!

Parameters:

mime - DOCUMENT ME!

setPlateInfo

public void setPlateInfo(Integer id)

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Parameters:

id - DOCUMENT ME!

setStageLabel

public void setStageLabel(String name,
 Float x,
 Float y,
 Float z)

DOCUMENT ME!

Parameters:

name - DOCUMENT ME!

x - DOCUMENT ME!

y - DOCUMENT ME!

z - DOCUMENT ME!

setTemperature

public void setTemperature(Float temp)

DOCUMENT ME!

Parameters:

temp - DOCUMENT ME!

setThumbnail

public void setThumbnail(URI tn)

DOCUMENT ME!

Parameters:

tn - DOCUMENT ME!