Package gov.nih.mipav.view.dialogs

Class DialogDTIColorDisplay

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

gov.nih.mipav.view.ViewJFrameBase

gov.nih.mipav.view.dialogs.DialogDTIColorDisplay

All Implemented Interfaces:

AlgorithmInterface, ViewImageUpdateInterface, ActionListener, ComponentListener, FocusListener, ItemListener, KeyListener, MouseListener, MouseWheelListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

public class DialogDTIColorDisplay
extends ViewJFrameBase
implements AlgorithmInterface, ChangeListener, ItemListener, MouseListener, MouseWheelListener, KeyListener, FocusListener

Author:

pandyan This is the main dialog for the DTI Color Display References: Developed in concert with Sinisa Pajevic from the NIH/CIT/DCB/MSCL group, Lin-Ching Chang D.Sc., Carlo Pierpaoli MD Ph.D., and Lindsay Walker MS from the the NIH/NICHD/LIMB/STBB group and Olga Vogt from the NIH/CIT/DCB/ISL/BIRSS group: Mathematical and Statistical Computing Laboratory (MSCL) Biomedical Imaging Research Services Section (BIRSS) Imaging Sciences Laboratory (ISL) Division of Cumputational Bioscience (DCB) Center for Informational Technology (CIT) Section on Tissue Biophysics and Biomimetics (STBB) Laboratory of Integrative and Medical Biophysics (LIMB) National Institute of Child Health invalid input: '&' Humann Development National Institutes of Health Publication Reference: S. Pajevic and C. Pierpaoli, "Color Schemes to Represent the Orientation of Anisotropic Tissues from Diffusion Tensor Data: Application to White Matter Fiber Tract Mapping in the Human Brain," Magnetic Resonance in Medicine, vol. 42, no. 3, pp. 526-540, 1999

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private float	adjustExp	adjust exp *
private JPanel	adjustExpPanel	panels *
JSlider	adjustExpSlider	various sliders in dialog *
private JTextField	adjustExpTextField	textfields *
private AlgorithmDTIColorDisplay	alg	handle to the algorithm *
private String	anisotropyFilename	names of eigenvector and anisotropy files*
private ModelImage	anisotropyImage	anisotropy src image *
private float	anisotropyMax	anisotropy max *
private JPanel	anisotropyMaxPanel	panels *
JSlider	anisotropyMaxSlider	various sliders in dialog *
private JTextField	anisotropyMaxTextField	textfields *
private float	anisotropyMin	anisotropy min *
private JPanel	anisotropyMinPanel	panels *
JSlider	anisotropyMinSlider	various sliders in dialog *
private JTextField	anisotropyMinTextField	textfields *
private JPanel	bottomPanel	panels *
private JButton	captureImageButton	buttons *
private JPanel	colorPanel	panels *
private JPanel	colorRangePanel	panels *
JSlider	colorRangeSlider	various sliders in dialog *
private JTextField	colorRangeTextField	textfields *
private ColorWheel	colorWheel	Color Wheels *
private JPanel	colorWheelChoicesPanel	panels *
private JComboBox	colorWheelComboBox	color wheel choices combo box *
private JPanel	colorWheelPanel	panels *
private ViewJComponentDTIImage	componentImage	ViewJComponentDTIImage *
private String	currentColorWheelType	String indicating current color wheel type *
private Rectangle	currentRectangle	rectangle for screen capture*
private JLabel	currentResultImageSlicesLabel	labels *
private JPanel	dimGreenPanel	panels *
JSlider	dimGreenSlider	various sliders in dialog *
private JTextField	dimGreenTextField	textfields *
private String	eigvecFilename	names of eigenvector and anisotropy files*
private ModelImage	eigvecSrcImage	eigenvector src image *
private boolean	flag	flag needed when performing restore defaults *
private float	gamma	gamma correction *
private JPanel	gammaPanel	panels *
JSlider	gammaSlider	various sliders in dialog *
private JTextField	gammaTextField	textfields *
private GridBagConstraints	gbc	GridbagConstraints *
private GridBagLayout	gbl	GridBagLayout *
protected float	heightResFactor	Storage for correction parameters where datasets have non isotropic values.
private JPanel	heuristicParametersPanel	panels *
protected float[]	imageBufferA	Buffer used to store image intensities the presently viewed slice of image A.
private BufferedReader	in	Buffered Reader for loading params *
private boolean	isMultiply	boolean for truncate/multiply *
private JButton	loadButton	buttons *
private float[]	m_afScreenResolutions	Sets the correct resolutions for the image that is created by captureImage.
private float	m_fSliceThickness	Sets the correct slice thickness
private JButton	magButton	buttons *
private JLabel	magLabel	labels *
private JPanel	mainPanel	panels *
private float	maxAdjustExp	mins and maxes for heuristic parameters*
private JLabel	maxAdjustExpLabel	labels *
private float	maxAnisotropyMax	mins and maxes for heuristic parameters*
private JLabel	maxAnisotropyMaxLabel	labels *
private float	maxAnisotropyMin	mins and maxes for heuristic parameters*
private JLabel	maxAnisotropyMinLabel	labels *
private float	maxColorRange	mins and maxes for heuristic parameters*
private JLabel	maxColorRangeLabel	labels *
private float	maxDimGreen	mins and maxes for heuristic parameters*
private JLabel	maxDimGreenLabel	labels *
private float	maxGamma	mins and maxes for heuristic parameters*
private JLabel	maxGammaLabel	labels *
private JLabel	maxResultImageSlicesLabel	labels *
private float	maxSatBlue	mins and maxes for heuristic parameters*
private JLabel	maxSatBlueLabel	labels *
private float	maxSatVsTheta	mins and maxes for heuristic parameters*
private JLabel	maxSatVsThetaLabel	labels *
private float	maxStevensBeta	mins and maxes for heuristic parameters*
private JLabel	maxStevensBetaLabel	labels *
private float	minAdjustExp	mins and maxes for heuristic parameters*
private JLabel	minAdjustExpLabel	labels *
private float	minAnisotropyMax	mins and maxes for heuristic parameters*
private JLabel	minAnisotropyMaxLabel	labels *
private float	minAnisotropyMin	mins and maxes for heuristic parameters*
private JLabel	minAnisotropyMinLabel	labels *
private float	minColorRange	mins and maxes for heuristic parameters*
private JLabel	minColorRangeLabel	labels *
private float	minDimGreen	mins and maxes for heuristic parameters*
private JLabel	minDimGreenLabel	labels *
private float	minGamma	mins and maxes for heuristic parameters*
private JLabel	minGammaLabel	labels *
private JLabel	minResultImageSlicesLabel	labels *
private float	minSatBlue	mins and maxes for heuristic parameters*
private JLabel	minSatBlueLabel	labels *
private float	minSatVsTheta	mins and maxes for heuristic parameters*
private JLabel	minSatVsThetaLabel	labels *
private float	minStevensBeta	mins and maxes for heuristic parameters*
private JLabel	minStevensBetaLabel	labels *
private JRadioButton	multRadio	radio buttons for truncate/multiply *
protected int	nImage	Number of slices in a 3D dataset.
protected int	nTImage	Number of time sequences in a 4D dataset.
private int	numSlices	num slices for result image *
private JPanel	optionsPanel	panels *
private BufferedWriter	out	Buffered Writer for saving params *
private float	pB	blue saturation *
private float	pC	color range *
private float	pG	green saturation *
protected int[]	pixBuffer	Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
private float	pS	saturation vs theta *
private JLabel	refLabel1	labels *
private JLabel	refLabel2	labels *
private JLabel	refLabel3	labels *
private JPanel	refPanel	panels *
protected float[]	resols	Storage of the image voxel resolutions.
private JButton	restoreDefaultsButton	buttons *
private JPanel	restoreDefaultsPanel	panels *
private ModelImage	resultImage	result image *
private JPanel	resultImagePanel	panels *
JSlider	resultImageSlider	various sliders in dialog *
private JPanel	resultImageSliderPanel	panels *
private JPanel	resultPanel	panels *
private JScrollPane	resultScrollPanel	scroll pane for result image *
private JPanel	satBluePanel	panels *
JSlider	satBlueSlider	various sliders in dialog *
private JTextField	satBlueTextField	textfields *
private JPanel	satVsThetaPanel	panels *
JSlider	satVsThetaSlider	various sliders in dialog *
private JTextField	satVsThetaTextField	textfields *
private JButton	saveButton	buttons *
private JPanel	saveLoadPanel	panels *
private static final long	serialVersionUID
private float	stevensBeta	steven's beta *
private JPanel	stevensBetaPanel	panels *
JSlider	stevensBetaSlider	various sliders in dialog *
private JTextField	stevensBetaTextField	textfields *
private JPanel	tempPanel	panels *
private String	title	dialog title and version *
private TitledBorder	titledBorder	titled border for certain components *
private ViewToolBarBuilder	toolbarBuilder	ViewToolBarBuilder *
private JPanel	toolbarPanel	panels *
private JPanel	truncMultPanel	panels *
private ButtonGroup	truncMultRadioGroup	radio group for truncate/multiply *
private JRadioButton	truncRadio	radio buttons for truncate/multiply *
protected int	tSlice	Image time sequence number of image that is displayed.
private String	type	type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *
protected int[]	units	Storage of the resolution units of measure.
private JButton	unMagButton	buttons *
protected float	widthResFactor	Storage for correction parameters where datasets have non isotropic values.
private float	zoom	current zoom for result image *
private JButton	zoomOneButton	buttons *
private int	zSlice	current z slice *

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
DialogDTIColorDisplay(boolean modal)	Constructor
DialogDTIColorDisplay(ModelImage kEigenVector, ModelImage kAnisotropy, ModelLUT kLUT, boolean modal)

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent e)	action performed
void	algorithmPerformed(AlgorithmBase algorithm)	algorithm performed
protected void	callAlgorithm()	call algorithm
private boolean	captureImage()	Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
void	finalize()	finalize
void	focusGained(FocusEvent event)	focus gained
void	focusLost(FocusEvent event)	focus lost
ViewControlsImage	getControls()	get controls
ModelImage	getImageA()	get image a
ModelImage	getImageB()	get image b
ModelRGB	getRGBTA()	Gets the RGB LUT table for ARGB image A.
void	init()	init
void	initExtentsVariables(ModelImage img)	Initializes the variables based on the image extents.
protected static float[]	initImageBuffer(int[] extents, boolean isColor)	Create the intensity buffer for an image.
protected static int[]	initNumSlices(ModelImage img)	Get the total number of time slices and volume slices.
protected static int[]	initPixelBuffer(int[] extents)	Create the pixel buffer for an image.
protected static float[]	initResFactor(float[] imgResols, int[] imgUnits)	Get the resolution correction needed for non-isotropic images.
protected static float[]	initResolutions(ModelImage img)	init resolutions
static ModelRGB	initRGB(ModelImage img)	Creates and initializes the ModelRGB for an image.
protected static int[]	initSlicePositions(ModelImage img)	Get the initial time and volume slice positions.
protected static int[]	initUnits(ModelImage img)	init units
void	itemStateChanged(ItemEvent event)	item state changed
void	keyPressed(KeyEvent event)	key pressed
void	keyReleased(KeyEvent event)	key released
void	keyTyped(KeyEvent event)	key typed
void	loadParams()	loads heuristic parameter values
void	magImage()	magnifies image
void	mouseClicked(MouseEvent event)	mouse clicked
void	mouseEntered(MouseEvent event)	mouse entered
void	mouseExited(MouseEvent event)	mouse exited
void	mousePressed(MouseEvent event)	mouse pressed
void	mouseReleased(MouseEvent e)	mouse released
void	mouseWheelMoved(MouseWheelEvent event)	mouse wheel moved
void	removeControls()	remove controls
void	restoreDefaults()	restore default parameters
void	saveParams()	save heuristic parameters
void	setActiveImage(int active)	set active image
void	setAlphaBlend(int value)	set alpha blend
void	setControls()	set controls
void	setEnabled(boolean flag)	set enabled
void	setImageB(ModelImage imageB)	set image b
void	setPaintBitmapSwitch(boolean flag)	set paint bitmap switch
void	setRGBTA(ModelRGB RGBT)	Sets the RGB LUT table for ARGB image A.
void	setRGBTB(ModelRGB RGBT)	set rgbtb
void	setScreenImageResolutions(float[] afResolutions, float fSlice)	Sets the correct resolutions for the image that is created by captureImage.
void	setSlice(int slice)	set slice
void	setTimeSlice(int tSlice)	set time slice
void	setTitle()	set title
void	stateChanged(ChangeEvent e)	state changed
void	unMagImage()	un-magnifies image
void	updateCurrentColorWheel()	update current color wheel
boolean	updateImageExtents()	update image extents
boolean	updateImages()	update images
boolean	updateImages(boolean flag)	update images
boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean flag, int interpMode)	update images
float	validateCurrentNum(String numString, float min, float max)	validate current number
void	windowClosing(WindowEvent event)	window closing
void	zoomOne()	sets image zoom to 1

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

about, buildLabelPanel, canCloseImageBAfterLoad, close, close, closeImageB, componentHidden, componentMoved, componentResized, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTa, setLUTb, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

title

private String title

dialog title and version *

mainPanel

private JPanel mainPanel

panels *

bottomPanel

private JPanel bottomPanel

panels *

refPanel

private JPanel refPanel

panels *

colorPanel

private JPanel colorPanel

panels *

colorWheelPanel

private JPanel colorWheelPanel

panels *

resultImagePanel

private JPanel resultImagePanel

panels *

optionsPanel

private JPanel optionsPanel

panels *

colorWheelChoicesPanel

private JPanel colorWheelChoicesPanel

panels *

heuristicParametersPanel

private JPanel heuristicParametersPanel

panels *

anisotropyMaxPanel

private JPanel anisotropyMaxPanel

panels *

anisotropyMinPanel

private JPanel anisotropyMinPanel

panels *

gammaPanel

private JPanel gammaPanel

panels *

stevensBetaPanel

private JPanel stevensBetaPanel

panels *

satBluePanel

private JPanel satBluePanel

panels *

dimGreenPanel

private JPanel dimGreenPanel

panels *

colorRangePanel

private JPanel colorRangePanel

panels *

satVsThetaPanel

private JPanel satVsThetaPanel

panels *

resultPanel

private JPanel resultPanel

panels *

resultImageSliderPanel

private JPanel resultImageSliderPanel

panels *

tempPanel

private JPanel tempPanel

panels *

toolbarPanel

private JPanel toolbarPanel

panels *

adjustExpPanel

private JPanel adjustExpPanel

panels *

truncMultPanel

private JPanel truncMultPanel

panels *

restoreDefaultsPanel

private JPanel restoreDefaultsPanel

panels *

saveLoadPanel

private JPanel saveLoadPanel

panels *

minAnisotropyMaxLabel

private JLabel minAnisotropyMaxLabel

labels *

maxAnisotropyMaxLabel

private JLabel maxAnisotropyMaxLabel

labels *

minAnisotropyMinLabel

private JLabel minAnisotropyMinLabel

labels *

maxAnisotropyMinLabel

private JLabel maxAnisotropyMinLabel

labels *

minGammaLabel

private JLabel minGammaLabel

labels *

maxGammaLabel

private JLabel maxGammaLabel

labels *

minStevensBetaLabel

private JLabel minStevensBetaLabel

labels *

maxStevensBetaLabel

private JLabel maxStevensBetaLabel

labels *

minSatBlueLabel

private JLabel minSatBlueLabel

labels *

maxSatBlueLabel

private JLabel maxSatBlueLabel

labels *

minDimGreenLabel

private JLabel minDimGreenLabel

labels *

maxDimGreenLabel

private JLabel maxDimGreenLabel

labels *

minColorRangeLabel

private JLabel minColorRangeLabel

labels *

maxColorRangeLabel

private JLabel maxColorRangeLabel

labels *

minSatVsThetaLabel

private JLabel minSatVsThetaLabel

labels *

maxSatVsThetaLabel

private JLabel maxSatVsThetaLabel

labels *

minResultImageSlicesLabel

private JLabel minResultImageSlicesLabel

labels *

maxResultImageSlicesLabel

private JLabel maxResultImageSlicesLabel

labels *

currentResultImageSlicesLabel

private JLabel currentResultImageSlicesLabel

labels *

magLabel

private JLabel magLabel

labels *

refLabel1

private JLabel refLabel1

labels *

refLabel2

private JLabel refLabel2

labels *

refLabel3

private JLabel refLabel3

labels *

minAdjustExpLabel

private JLabel minAdjustExpLabel

labels *

maxAdjustExpLabel

private JLabel maxAdjustExpLabel

labels *

minAnisotropyMax

private float minAnisotropyMax

mins and maxes for heuristic parameters*

maxAnisotropyMax

private float maxAnisotropyMax

mins and maxes for heuristic parameters*

minAnisotropyMin

private float minAnisotropyMin

mins and maxes for heuristic parameters*

maxAnisotropyMin

private float maxAnisotropyMin

mins and maxes for heuristic parameters*

minGamma

private float minGamma

mins and maxes for heuristic parameters*

maxGamma

private float maxGamma

mins and maxes for heuristic parameters*

minStevensBeta

private float minStevensBeta

mins and maxes for heuristic parameters*

maxStevensBeta

private float maxStevensBeta

mins and maxes for heuristic parameters*

minSatBlue

private float minSatBlue

mins and maxes for heuristic parameters*

maxSatBlue

private float maxSatBlue

mins and maxes for heuristic parameters*

minDimGreen

private float minDimGreen

mins and maxes for heuristic parameters*

maxDimGreen

private float maxDimGreen

mins and maxes for heuristic parameters*

minColorRange

private float minColorRange

mins and maxes for heuristic parameters*

maxColorRange

private float maxColorRange

mins and maxes for heuristic parameters*

minSatVsTheta

private float minSatVsTheta

mins and maxes for heuristic parameters*

maxSatVsTheta

private float maxSatVsTheta

mins and maxes for heuristic parameters*

minAdjustExp

private float minAdjustExp

mins and maxes for heuristic parameters*

maxAdjustExp

private float maxAdjustExp

mins and maxes for heuristic parameters*

resultScrollPanel

private JScrollPane resultScrollPanel

scroll pane for result image *

anisotropyMaxTextField

private JTextField anisotropyMaxTextField

textfields *

anisotropyMinTextField

private JTextField anisotropyMinTextField

textfields *

gammaTextField

private JTextField gammaTextField

textfields *

stevensBetaTextField

private JTextField stevensBetaTextField

textfields *

satBlueTextField

private JTextField satBlueTextField

textfields *

dimGreenTextField

private JTextField dimGreenTextField

textfields *

colorRangeTextField

private JTextField colorRangeTextField

textfields *

satVsThetaTextField

private JTextField satVsThetaTextField

textfields *

adjustExpTextField

private JTextField adjustExpTextField

textfields *

magButton

private JButton magButton

buttons *

unMagButton

private JButton unMagButton

buttons *

zoomOneButton

private JButton zoomOneButton

buttons *

captureImageButton

private JButton captureImageButton

buttons *

restoreDefaultsButton

private JButton restoreDefaultsButton

buttons *

saveButton

private JButton saveButton

buttons *

loadButton

private JButton loadButton

buttons *

eigvecSrcImage

private ModelImage eigvecSrcImage

eigenvector src image *

anisotropyImage

private ModelImage anisotropyImage

anisotropy src image *

eigvecFilename

private String eigvecFilename

names of eigenvector and anisotropy files*

anisotropyFilename

private String anisotropyFilename

names of eigenvector and anisotropy files*

resultImage

private ModelImage resultImage

result image *

colorWheel

private ColorWheel colorWheel

Color Wheels *

alg

private AlgorithmDTIColorDisplay alg

handle to the algorithm *

gbl

private GridBagLayout gbl

GridBagLayout *

gbc

private GridBagConstraints gbc

GridbagConstraints *

anisotropyMaxSlider

public JSlider anisotropyMaxSlider

various sliders in dialog *

anisotropyMinSlider

public JSlider anisotropyMinSlider

various sliders in dialog *

gammaSlider

public JSlider gammaSlider

various sliders in dialog *

stevensBetaSlider

public JSlider stevensBetaSlider

various sliders in dialog *

satBlueSlider

public JSlider satBlueSlider

various sliders in dialog *

dimGreenSlider

public JSlider dimGreenSlider

various sliders in dialog *

colorRangeSlider

public JSlider colorRangeSlider

various sliders in dialog *

satVsThetaSlider

public JSlider satVsThetaSlider

various sliders in dialog *

resultImageSlider

public JSlider resultImageSlider

various sliders in dialog *

adjustExpSlider

public JSlider adjustExpSlider

various sliders in dialog *

titledBorder

private TitledBorder titledBorder

titled border for certain components *

colorWheelComboBox

private JComboBox colorWheelComboBox

color wheel choices combo box *

anisotropyMax

private float anisotropyMax

anisotropy max *

anisotropyMin

private float anisotropyMin

anisotropy min *

adjustExp

private float adjustExp

adjust exp *

gamma

private float gamma

gamma correction *

stevensBeta

private float stevensBeta

steven's beta *

pB

private float pB

blue saturation *

pG

private float pG

green saturation *

pC

private float pC

color range *

pS

private float pS

saturation vs theta *

componentImage

private ViewJComponentDTIImage componentImage

ViewJComponentDTIImage *

imageBufferA

protected float[] imageBufferA

Buffer used to store image intensities the presently viewed slice of image A.

resols

protected float[] resols

Storage of the image voxel resolutions. One resolution value per dimension.

pixBuffer

protected int[] pixBuffer

Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data. The ARGB values are generated by using the imageA intensities as a index into a LUT.

units

protected int[] units

Storage of the resolution units of measure. For example, mm, cm, inches ...

zSlice

private int zSlice

current z slice *

widthResFactor

protected float widthResFactor

Storage for correction parameters where datasets have non isotropic values.

heightResFactor

protected float heightResFactor

Storage for correction parameters where datasets have non isotropic values.

tSlice

protected int tSlice

Image time sequence number of image that is displayed. Zero indexed based.

nImage

protected int nImage

Number of slices in a 3D dataset.

nTImage

protected int nTImage

Number of time sequences in a 4D dataset.

type

private String type

type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *

toolbarBuilder

private ViewToolBarBuilder toolbarBuilder

ViewToolBarBuilder *

zoom

private float zoom

current zoom for result image *

numSlices

private int numSlices

num slices for result image *

currentRectangle

private Rectangle currentRectangle

rectangle for screen capture*

truncMultRadioGroup

private ButtonGroup truncMultRadioGroup

radio group for truncate/multiply *

truncRadio

private JRadioButton truncRadio

radio buttons for truncate/multiply *

multRadio

private JRadioButton multRadio

radio buttons for truncate/multiply *

isMultiply

private boolean isMultiply

boolean for truncate/multiply *

flag

private boolean flag

flag needed when performing restore defaults *

in

private BufferedReader in

Buffered Reader for loading params *

out

private BufferedWriter out

Buffered Writer for saving params *

currentColorWheelType

private String currentColorWheelType

String indicating current color wheel type *

m_afScreenResolutions

private float[] m_afScreenResolutions

Sets the correct resolutions for the image that is created by captureImage.

m_fSliceThickness

private float m_fSliceThickness

Sets the correct slice thickness

Constructor Details

DialogDTIColorDisplay

public DialogDTIColorDisplay(boolean modal)

Constructor

DialogDTIColorDisplay

public DialogDTIColorDisplay(ModelImage kEigenVector,
 ModelImage kAnisotropy,
 ModelLUT kLUT,
 boolean modal)

Method Details

init

public void init()

init

actionPerformed

public void actionPerformed(ActionEvent e)

action performed

Specified by:

actionPerformed in interface ActionListener

Specified by:

actionPerformed in class ViewJFrameBase

Parameters:

e - the event from the UI

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

algorithm performed

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - the algorithm which has just completed

callAlgorithm

protected void callAlgorithm()

call algorithm

stateChanged

public void stateChanged(ChangeEvent e)

state changed

Specified by:

stateChanged in interface ChangeListener

Overrides:

stateChanged in class ViewJFrameBase

Parameters:

e - the change event

itemStateChanged

public void itemStateChanged(ItemEvent event)

item state changed

Specified by:

itemStateChanged in interface ItemListener

updateCurrentColorWheel

public void updateCurrentColorWheel()

update current color wheel

mouseClicked

public void mouseClicked(MouseEvent event)

mouse clicked

Specified by:

mouseClicked in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent event)

mouse entered

Specified by:

mouseEntered in interface MouseListener

mouseExited

public void mouseExited(MouseEvent event)

mouse exited

Specified by:

mouseExited in interface MouseListener

mousePressed

public void mousePressed(MouseEvent event)

mouse pressed

Specified by:

mousePressed in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent e)

mouse released

Specified by:

mouseReleased in interface MouseListener

magImage

public void magImage()

magnifies image

unMagImage

public void unMagImage()

un-magnifies image

zoomOne

public void zoomOne()

sets image zoom to 1

restoreDefaults

public void restoreDefaults()

restore default parameters

saveParams

public void saveParams()

save heuristic parameters

loadParams

public void loadParams()

loads heuristic parameter values

captureImage

private boolean captureImage()

Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.

Returns:

windowClosing

public void windowClosing(WindowEvent event)

window closing

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class ViewJFrameBase

Parameters:

event - the window event that triggered this method

mouseWheelMoved

public void mouseWheelMoved(MouseWheelEvent event)

mouse wheel moved

Specified by:

mouseWheelMoved in interface MouseWheelListener

Parameters:

event -

keyTyped

public void keyTyped(KeyEvent event)

key typed

Specified by:

keyTyped in interface KeyListener

focusLost

public void focusLost(FocusEvent event)

focus lost

Specified by:

focusLost in interface FocusListener

validateCurrentNum

public float validateCurrentNum(String numString,
 float min,
 float max)

validate current number

Parameters:

numString -

min -

max -

Returns:

initImageBuffer

protected static float[] initImageBuffer(int[] extents,
 boolean isColor)

Create the intensity buffer for an image.

Parameters:

extents - the extents of the image

isColor - whether the image is in color

Returns:

a buffer which is big enough to contain the image intensity data

initPixelBuffer

protected static int[] initPixelBuffer(int[] extents)

Create the pixel buffer for an image.

Parameters:

extents - the extents of the image

Returns:

a buffer which is big enough to contain the image pixel data

initResolutions

protected static float[] initResolutions(ModelImage img)

init resolutions

Parameters:

img -

Returns:

initUnits

protected static int[] initUnits(ModelImage img)

init units

Parameters:

img -

Returns:

initResFactor

protected static float[] initResFactor(float[] imgResols,
 int[] imgUnits)

Get the resolution correction needed for non-isotropic images.

Parameters:

imgResols - the image resolution

imgUnits - the image units of measure

Returns:

the resolution correction factor in the x (the first element) and y (the second element) dimensions

initRGB

public static ModelRGB initRGB(ModelImage img)
                        throws OutOfMemoryError

Creates and initializes the ModelRGB for an image.

Parameters:

img - the image to create a ModelRGB for

Returns:

a ModelRGB for the image img (null if NOT a color image)

Throws:

OutOfMemoryError - if enough memory cannot be allocated for this method

initExtentsVariables

public void initExtentsVariables(ModelImage img)

Initializes the variables based on the image extents. (i.e. number of slices, number of time slices, the initial z-slice, etc.

Parameters:

img - the image to set the extent variables for

initSlicePositions

protected static int[] initSlicePositions(ModelImage img)

Get the initial time and volume slice positions.

Parameters:

img - the image to get the slice positions of

Returns:

an array containing the slice in the volume (in the first element) and the time slice (in the second element)

initNumSlices

protected static int[] initNumSlices(ModelImage img)

Get the total number of time slices and volume slices.

Parameters:

img - the image to get the slices of

Returns:

an array containing the number of volume slices (in the first element) and the number of time slices in the image (in the second element)

finalize

public void finalize()

finalize

Overrides:

finalize in class ViewJFrameBase

getRGBTA

public ModelRGB getRGBTA()

Gets the RGB LUT table for ARGB image A.

Overrides:

getRGBTA in class ViewJFrameBase

Returns:

RGBT the new RGB LUT to be applied to the image

setRGBTA

public void setRGBTA(ModelRGB RGBT)

Sets the RGB LUT table for ARGB image A.

Specified by:

setRGBTA in class ViewJFrameBase

Parameters:

RGBT - the new RGB LUT to be applied to the image

getControls

public ViewControlsImage getControls()

get controls

Specified by:

getControls in class ViewJFrameBase

Returns:

the frame's image controls

getImageA

public ModelImage getImageA()

get image a

Specified by:

getImageA in class ViewJFrameBase

Returns:

imageA

getImageB

public ModelImage getImageB()

get image b

Specified by:

getImageB in class ViewJFrameBase

Returns:

imageB

removeControls

public void removeControls()

remove controls

Specified by:

removeControls in class ViewJFrameBase

setActiveImage

public void setActiveImage(int active)

set active image

Specified by:

setActiveImage in class ViewJFrameBase

Parameters:

active - IMAGE_A or IMAGE_B

setAlphaBlend

public void setAlphaBlend(int value)

set alpha blend

Specified by:

setAlphaBlend in class ViewJFrameBase

Parameters:

value - amount [0,100] that is the percentage of Image A to be displayed and (1-percentage) of Image B to be displayed

setControls

public void setControls()

set controls

Specified by:

setControls in class ViewJFrameBase

setEnabled

public void setEnabled(boolean flag)

set enabled

Specified by:

setEnabled in class ViewJFrameBase

Parameters:

flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified

setImageB

public void setImageB(ModelImage imageB)

set image b

Specified by:

setImageB in class ViewJFrameBase

Parameters:

imageB - The image to make image-B in this frame.

setPaintBitmapSwitch

public void setPaintBitmapSwitch(boolean flag)

set paint bitmap switch

Specified by:

setPaintBitmapSwitch in class ViewJFrameBase

Parameters:

flag - if true do not getMask on a setActiveImage command

setRGBTB

public void setRGBTB(ModelRGB RGBT)

set rgbtb

Specified by:

setRGBTB in class ViewJFrameBase

Parameters:

RGBT - the RGB table to use for image B

setTitle

public void setTitle()

set title

Specified by:

setTitle in class ViewJFrameBase

updateImageExtents

public boolean updateImageExtents()

update image extents

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Specified by:

updateImageExtents in class ViewJFrameBase

Returns:

true if the update was successful, false otherwise

See Also:

• ViewImageUpdateInterface

setSlice

public void setSlice(int slice)

set slice

Specified by:

setSlice in interface ViewImageUpdateInterface

Parameters:

slice - Current slice

setTimeSlice

public void setTimeSlice(int tSlice)

set time slice

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Parameters:

tSlice - Current time volume

updateImages

public boolean updateImages()

update images

Specified by:

updateImages in interface ViewImageUpdateInterface

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(boolean flag)

update images

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

flag - forces show to re import image and calc. java image

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean flag,
 int interpMode)

update images

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

flag - forces show to re import image and calc. java image

interpMode - image interpolation method (Nearest or Smooth)

Returns:

boolean confirming a successful update

focusGained

public void focusGained(FocusEvent event)

focus gained

Specified by:

focusGained in interface FocusListener

keyPressed

public void keyPressed(KeyEvent event)

key pressed

Specified by:

keyPressed in interface KeyListener

keyReleased

public void keyReleased(KeyEvent event)

key released

Specified by:

keyReleased in interface KeyListener

setScreenImageResolutions

public void setScreenImageResolutions(float[] afResolutions,
 float fSlice)

Sets the correct resolutions for the image that is created by captureImage.

Parameters:

afResolutions - correct image resolutions.

fSlice - slice thickness