java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.structures.ModelStorageBase
  - - gov.nih.mipav.model.structures.ModelLUT

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class ModelLUT
extends ModelStorageBase
```
Model of a Lookup Table (LUT). At present, one can construct 10 different LUTs: GRAY, SPECTRUM, HOTMETAL, COOLHOT, SKIN, STRIPED, RED, GREEN, BLUE, GRAY_BR, and BONE. This class allows the programmer to specify the number of colors for the LUT. The LUT extents should be 4 x 256 or problems may arise with the differing colormaps (This class can be extended to handle arbitrary size LUTs but 256 is almost universal). There are 256 locations with alpha, red, green, and blue values as floats in order to store both RGB or HSI or etc. The LUTs are calculated from the corresponding transfer functions for each of a, r, g, and b.

Version:

1.0

Author:

Matthew J. McAuliffe, Ph.D.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.structures.ModelStorageBase
  ModelStorageBase.DataType

Field Summary

Fields
Modifier and Type	Field	Description
`private TransferFunction`	`alphaLine`	Fucntion that attenuates image values.
`static int`	`BlackBody`	Customized LUTs
`static int`	`BLUE`	Sets up the transfer function colors to be monochrome-blue.
`private TransferFunction`	`blueLine`	Function that maps the blue function of the LUT.
`static int`	`BONE`	Sets up the transfer function to be yellow-ish orange which is supposed to make bones look good.
`static int`	`Cardiac`
`static int`	`COOLHOT`	Sets up the transfer function colors to be cool-hot.
`static java.lang.String`	`customLUTsLocation`	Opens and returns a buffered reader for a given custom LUT name.
`static int`	`Flow`
`static int`	`GEcolor`
`static int`	`GRAY`	Sets up the transfer function colors to be gray.
`static int`	`GRAY_BR`	Sets up the transfer function colors to be gray, with blue in the first location, red in the last location.
`static int`	`GrayRainbow`
`static int`	`GREEN`	Sets up the transfer function colors to be monochrome-green.
`private TransferFunction`	`greenLine`	Function that maps the green function of the LUT.
`static int`	`HotGreen`
`static int`	`HotIron`
`static int`	`HotMetal`
`static int`	`HOTMETAL`	Sets up the transfer function colors to be hotmetal.
`static int`	`Hue1`
`static int`	`Hue2`
`private int[]`	`indexedLUT`	Special int array where the LUT is packed with alpha in the most significant byte of the int, followed red, green, and blue.
`static int`	`ired`
`private int`	`nColors`	Number of colors in the LUT.
`static int`	`NIH`
`static int`	`Rainbow`
`static int`	`Rainbow2`
`static int`	`Rainbow3`
`static int`	`Ratio`
`static int`	`RED`	Sets up the transfer function colors to be monochrome-red.
`private TransferFunction`	`redLine`	Function that maps the red function of the LUT.
`private int[]`	`remappedLUT`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`static int`	`SKIN`	Sets up the transfer function colors to be skin-colors.
`static int`	`Spectrum`
`static int`	`SPECTRUM`	Sets up the transfer function colors to be colours of .
`static int`	`Stern`
`static int`	`STRIPED`	Sets up the transfer function colors to be striped.
`private TransferFunction`	`transferLine`	Function that maps image values into the LUT.
`private int`	`type`	DOCUMENT ME!
`static int`	`UCLA`
`static int`	`VR_Bones`
`static int`	`VR_Muscles_Bones`
`static int`	`VR_Red_Vessels`
`private float[]`	`x`	The X coordinates of the transfer functions.

Fields inherited from class gov.nih.mipav.model.structures.ModelStorageBase
ARGB, ARGB_FLOAT, ARGB_FLOAT_STRING, ARGB_STRING, ARGB_UINTEGER, ARGB_UINTEGER_STRING, ARGB_USHORT, ARGB_USHORT_STRING, BOOLEAN, BOOLEAN_STRING, bufferTypeStr, BYTE, BYTE_STRING, COMPLEX, COMPLEX_STRING, DCOMPLEX, DCOMPLEX_STRING, DOUBLE, DOUBLE_STRING, fileInfo, FLOAT, FLOAT_STRING, INTEGER, INTEGER_STRING, lastMax, lastMin, LINEAR, logMagDisp, LONG, LONG_STRING, NEAREST, RW_LOCKED, SHORT, SHORT_STRING, TAYLOR, UBYTE, UBYTE_STRING, UINTEGER, UINTEGER_STRING, UNLOCKED, USHORT, USHORT_STRING, W_LOCKED

Constructor Summary

Constructors
Constructor Description

ModelLUT()
Default Constructor.

ModelLUT(int _type, int _nColors, int[] dimExtents)
Constructor.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static ModelLUT`	`buildTDistLUT(int dof, double sig, ModelImage image)`	Build LUT consisting of a student t-distribution at the specified level os significance for the given degrees of freedom.
`private void`	`calcBand(TransferFunction function, float[] band)`	Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
`int[]`	`exportIndexedLUT()`	This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue.
`int`	`exportIndexedLUT(int[] arrayLUT)`	This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue.
`static void`	`exportIndexedLUTMin(ModelLUT kLut, byte[] remappedLUTMin)`
`static void`	`exportIndexedLUTMin(ModelLUT kLut, byte[] remappedLUTMin, int index)`
`static void`	`exportIndexedLUTMin(ModelRGB kRGBT, byte[] remappedLUTMin)`
`float[][]`	`exportRGB_LUT(boolean applyAlpha)`	This is a method to export a 2D float array of the LUT.
`void`	`finalize()`	Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
`TransferFunction`	`getAlphaFunction()`	Accessor that returns the alpha transfer function.
`TransferFunction`	`getBlueFunction()`	Accessor that returns the blue transfer function.
`java.awt.Color`	`getColor(int index)`	Gets a specific index of the LUT.
`TransferFunction`	`getGreenFunction()`	Accessor that returns the green transfer function.
`int[]`	`getIndexedLUT()`
`int`	`getLUTType()`	Accessor to get LUT type.
`TransferFunction`	`getRedFunction()`	Accessor that returns the red transfer function.
`TransferFunction`	`getTransferFunction()`	Accessor that returns the transfer function.
`void`	`invertLUT()`	Inverts the LUT using the values stored in the band arrays and not the transfer functions.
`void`	`makeBlueTransferFunctions()`	Creates the R, G, and B transfer functions to produce a blue scale LUT.
`void`	`makeBoneTransferFunctions()`	Creates the R, G, and B transfer functions to produce a bone scale LUT.
`void`	`makeCoolHotTransferFunctions()`	Creates the R, G, and B transfer functions to produce a "Cool hot" scale LUT.
`void`	`makeCTThighTransferFunctions()`	Makes a LUT specifically for viewing CT thigh images
`void`	`makeCustomizedLUT(java.lang.String name)`	makeVR with customized LUT
`void`	`makeGrayBRTransferFunctions()`	Creates the R, G, and B transfer functions to produce a gray scale LUT.
`void`	`makeGrayTransferFunctions()`	Creates the R, G, and B transfer functions to produce a gray scale LUT.
`void`	`makeGreenTransferFunctions()`	Creates the R, G, and B transfer functions to produce a green scale LUT.
`void`	`makeHotMetalTransferFunctions()`	Creates the R, G, and B transfer functions to produce a spectrum scale LUT.
`void`	`makeIndexedLUT(int[] opacityArray)`	Special LUT to be used to display java image.
`void`	`makeLUT(int _nColors)`	This method uses the A, R, G, B transfer functions to build the desired LUT.
`void`	`makeRedTransferFunctions()`	Creates the R, G, and B transfer functions to produce a red scale LUT.
`void`	`makeSkinTransferFunctions()`	Creates the R, G, and B transfer functions to produce a skin scale LUT.
`void`	`makeSpectrumTransferFunctions()`	Creates the R, G, and B transfer functions to produce a spectrum scale LUT.
`void`	`makeStripedLUT()`	makeStripedLUT -
`void`	`oneToZeroLUTAdjust()`	The purpose of this method is to adjust the zero index of the LUT from (1, 1, 1) to (0, 0, 0) The reason is so image A and image B are not blended throughout by default.
`static java.io.BufferedReader`	`openLUTFile(java.lang.String lutName)`
`void`	`resetAlphaLine()`	Resets the alpha function to be linear.
`void`	`resetTransferLine(float min, float max)`	Resets the transfer function to be linear.
`void`	`resetTransferLine(float min, float imgMin, float max, float imgMax)`	Resets the transfer function to be linear.
`void`	`setColor(int index, int alpha, int red, int green, int blue)`	Sets a specific index of the LUT with the given color and updates the compressed LUT.
`void`	`setColor(int index, java.awt.Color LUTcolor)`	Sets a specific index of the LUT with the given color.
`void`	`setTransferFunction(TransferFunction txFunction)`	Sets the LUTs transfer function.
`java.lang.String`	`toString()`	displays the LUT colours and alpha values in hex.
`java.lang.String`	`toString(boolean displayInHex, boolean displayAlphaValues)`	Presents the Lookuptable by.
`void`	`zeroToOneLUTAdjust()`	The purpose of this method is to adjust the zero index of the LUT from (0, 0, 0) to (1, 1, 1) The reason is so image A and image B are blended throughout by default.

Methods inherited from class gov.nih.mipav.model.structures.ModelStorageBase
addSurfaceMask, allocateData, calcAvgIntenStdDev, calcMinMax, calcMinMax, calcMinMaxMag, calcMinMaxNonZero, clone, computeDataSize, construct, convertToFloat, disposeLocal, export, export, exportComplexData, exportComplexSliceXY, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportData, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDataNoLock, exportDComplexData, exportDiagonal, exportDiagonal, exportDiagonal, exportDMagData, exportMagData, exportMagData, exportRGBData, exportRGBData, exportRGBData, exportRGBData, exportRGBData, exportRGBDataNoLock, exportRGBDataNoLock, exportSliceXY, exportSliceXY, exportSliceXY, exportSliceXY, exportSliceXY, exportSliceXY, findMax, get, get, get, get, get, getAvgInten, getAvgIntenB, getAvgIntenG, getAvgIntenR, getAxisOrientation, getBiLinear, getBoolean, getBoolean, getBoolean, getBoolean, getBoolean, getBufferTypeStr, getByte, getByte, getByte, getByte, getByte, getByteBiLinear, getByteTriLinear, getC, getConvolve, getDataSize, getDataType, getDouble, getDouble, getDouble, getDouble, getDouble, getDoubleBiLinear, getDoubleTriLinear, getExtents, getExtents, getExtents, getExtentsSize, getFileInfo, getFileInfo, getFilterType, getFloat, getFloat, getFloat, getFloat, getFloat, getFloatBiLinear, getFloatC, getFloatC, getFloatC, getFloatTriLinear, getFloatTriLinearBounds, getFloatTriLinearBounds, getFloatTriLinearBoundsTime, getFreq1, getFreq2, getFreqU, getFreqV, getHaveWindowed, getHeight, getImage25D, getImageOrientation, getInt, getInt, getInt, getInt, getInt, getIntBiLinear, getIntTriLinear, getLockStatus, getLogMagDisplay, getLong, getLong, getLong, getLong, getLong, getLongBiLinear, getLongTriLinear, getMax, getMaxA, getMaxB, getMaxG, getMaxR, getMin, getMinA, getMinB, getMinG, getMinR, getNDims, getNoLogMax, getNoLogMin, getNoLogMinNonZero, getNonZeroMax, getNonZeroMaxB, getNonZeroMaxG, getNonZeroMaxR, getNonZeroMin, getNonZeroMinB, getNonZeroMinG, getNonZeroMinR, getNumPixels, getOrigin, getOrigin, getOriginalCropCheckbox, getOriginalDoCrop, getOriginalEnd, getOriginalEpsilon, getOriginalExtents, getOriginalFilterConstruction, getOriginalFilterOrder, getOriginalKernelDimension, getOriginalRs, getOriginalStart, getRadiologicalView, getResolutions, getResolutions, getResolutions, getShort, getShort, getShort, getShort, getShort, getShortBiLinear, getShortTriLinear, getSigmaU, getSigmaV, getSize, getSliceSize, getSmallestMagnitudeNegative, getSmallestMagnitudeNegativeB, getSmallestMagnitudeNegativeG, getSmallestMagnitudeNegativeR, getSmallestMagnitudePositive, getSmallestMagnitudePositiveB, getSmallestMagnitudePositiveG, getSmallestMagnitudePositiveR, getStdDeviation, getStdDeviationB, getStdDeviationG, getStdDeviationR, getSumPixelInten, getSumPixelIntenB, getSumPixelIntenG, getSumPixelIntenR, getSurfaceMask, getSurfaceMaskColor, getTheta, getTriLinear, getType, getTypeMax, getTypeMin, getTypeString, getUByte, getUByte, getUByte, getUByte, getUByte, getUByteBiLinear, getUByteTriLinear, getUInt, getUInt, getUInt, getUInt, getUInt, getUIntBiLinear, getUIntTriLinear, getUnequalDim, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasure, getUShort, getUShort, getUShort, getUShort, getUShort, getUShortBiLinear, getUShortTriLinear, getVolumeIterationFactors, getVolumeSize, getWidth, importComplexData, importData, importData, importData, importData, importData, importData, importData, importData, importData, importData, importDComplexData, importRGBData, importRGBData, importRGBData, importUData, importUData, importUData, reallocate, reallocate, reallocate, recomputeDataSize, releaseLock, removeSurfaceMask, removeSurfaceMasks, restoreSurfaceMasks, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, set, setAll, setAll, setAll, setAll, setAll, setAllUByte, setAllUShort, setC, setC, setC, setC, setC, setComplex, setConvolve, setExtents, setFileInfo, setFileInfo, setFilterType, setFreq1, setFreq2, setFreqU, setFreqV, setHaveWindowed, setImage25D, setLock, setLock, setLogMagDisplay, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setOriginalCropCheckbox, setOriginalDoCrop, setOriginalEnd, setOriginalEpsilon, setOriginalExtents, setOriginalFilterConstruction, setOriginalFilterOrder, setOriginalKernelDimension, setOriginalRs, setOriginalStart, setRadiologicalView, setResolutions, setResolutions, setShort, setShort, setSigmaU, setSigmaV, setTheta, setType, setType, setUByte, setUByte, setUByte, setUByte, setUByte, setUInt, setUInt, setUInt, setUInt, setUInt, setUnequalDim, setUShort, setUShort, setUShort, setUShort, setUShort

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - GRAY
```
public static final int GRAY
```
    Sets up the transfer function colors to be gray.
    
    See Also:
    
    Constant Field Values
  - SPECTRUM
```
public static final int SPECTRUM
```
    Sets up the transfer function colors to be colours of .
    
    See Also:
    
    Constant Field Values
  - HOTMETAL
```
public static final int HOTMETAL
```
    Sets up the transfer function colors to be hotmetal.
    
    See Also:
    
    Constant Field Values
  - COOLHOT
```
public static final int COOLHOT
```
    Sets up the transfer function colors to be cool-hot.
    
    See Also:
    
    Constant Field Values
  - SKIN
```
public static final int SKIN
```
    Sets up the transfer function colors to be skin-colors.
    
    See Also:
    
    Constant Field Values
  - STRIPED
```
public static final int STRIPED
```
    Sets up the transfer function colors to be striped.
    
    See Also:
    
    Constant Field Values
  - RED
```
public static final int RED
```
    Sets up the transfer function colors to be monochrome-red.
    
    See Also:
    
    Constant Field Values
  - GREEN
```
public static final int GREEN
```
    Sets up the transfer function colors to be monochrome-green.
    
    See Also:
    
    Constant Field Values
  - BLUE
```
public static final int BLUE
```
    Sets up the transfer function colors to be monochrome-blue.
    
    See Also:
    
    Constant Field Values
  - GRAY_BR
```
public static final int GRAY_BR
```
    Sets up the transfer function colors to be gray, with blue in the first location, red in the last location.
    
    See Also:
    
    Constant Field Values
  - BONE
```
public static final int BONE
```
    Sets up the transfer function to be yellow-ish orange which is supposed to make bones look good.
    
    See Also:
    
    Constant Field Values
  - BlackBody
```
public static final int BlackBody
```
    Customized LUTs
    
    See Also:
    
    Constant Field Values
  - Cardiac
```
public static final int Cardiac
```
    See Also:
    
    Constant Field Values
  - Flow
```
public static final int Flow
```
    See Also:
    
    Constant Field Values
  - GEcolor
```
public static final int GEcolor
```
    See Also:
    
    Constant Field Values
  - GrayRainbow
```
public static final int GrayRainbow
```
    See Also:
    
    Constant Field Values
  - HotGreen
```
public static final int HotGreen
```
    See Also:
    
    Constant Field Values
  - HotIron
```
public static final int HotIron
```
    See Also:
    
    Constant Field Values
  - HotMetal
```
public static final int HotMetal
```
    See Also:
    
    Constant Field Values
  - Hue1
```
public static final int Hue1
```
    See Also:
    
    Constant Field Values
  - Hue2
```
public static final int Hue2
```
    See Also:
    
    Constant Field Values
  - ired
```
public static final int ired
```
    See Also:
    
    Constant Field Values
  - NIH
```
public static final int NIH
```
    See Also:
    
    Constant Field Values
  - Rainbow
```
public static final int Rainbow
```
    See Also:
    
    Constant Field Values
  - Rainbow2
```
public static final int Rainbow2
```
    See Also:
    
    Constant Field Values
  - Rainbow3
```
public static final int Rainbow3
```
    See Also:
    
    Constant Field Values
  - Ratio
```
public static final int Ratio
```
    See Also:
    
    Constant Field Values
  - Spectrum
```
public static final int Spectrum
```
    See Also:
    
    Constant Field Values
  - Stern
```
public static final int Stern
```
    See Also:
    
    Constant Field Values
  - UCLA
```
public static final int UCLA
```
    See Also:
    
    Constant Field Values
  - VR_Bones
```
public static final int VR_Bones
```
    See Also:
    
    Constant Field Values
  - VR_Muscles_Bones
```
public static final int VR_Muscles_Bones
```
    See Also:
    
    Constant Field Values
  - VR_Red_Vessels
```
public static final int VR_Red_Vessels
```
    See Also:
    
    Constant Field Values
  - alphaLine
```
private TransferFunction alphaLine
```
    Fucntion that attenuates image values.
  - blueLine
```
private TransferFunction blueLine
```
    Function that maps the blue function of the LUT.
  - greenLine
```
private TransferFunction greenLine
```
    Function that maps the green function of the LUT.
  - indexedLUT
```
private int[] indexedLUT
```
    Special int array where the LUT is packed with alpha in the most significant byte of the int, followed red, green, and blue.
  - nColors
```
private int nColors
```
    Number of colors in the LUT.
  - redLine
```
private TransferFunction redLine
```
    Function that maps the red function of the LUT.
  - remappedLUT
```
private int[] remappedLUT
```
    DOCUMENT ME!
  - transferLine
```
private TransferFunction transferLine
```
    Function that maps image values into the LUT. The x coord. ranges [image.min, image.max];
  - type
```
private int type
```
    DOCUMENT ME!
  - x
```
private float[] x
```
    The X coordinates of the transfer functions.
  - customLUTsLocation
```
public static final java.lang.String customLUTsLocation
```
    Opens and returns a buffered reader for a given custom LUT name.
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - ModelLUT
```
public ModelLUT()
```
    Default Constructor.
  - ModelLUT
```
public ModelLUT(int _type,
                int _nColors,
                int[] dimExtents)
```
    Constructor.
    
    Parameters:
    
    _type - indicates type of lut (ie. GRAY, SPECTRUM ...)
    
    _nColors - number of colors defined in LUT
    
    dimExtents - array indicating LUT extent in each dimension (e.g. 4x256)
- Method Detail
  - finalize
```
public void finalize()
```
    Description copied from class: ModelStorageBase
    
    Calls disposeLocal of this class to ensure this class nulls the references to global class variables so that memory will be recovered.
    
    Overrides:
    
    finalize in class ModelStorageBase
  - buildTDistLUT
```
public static ModelLUT buildTDistLUT(int dof,
                                     double sig,
                                     ModelImage image)
```
    Build LUT consisting of a student t-distribution at the specified level os significance for the given degrees of freedom.
    
    Parameters:
    
    dof - degrees of freedom
    
    sig - level of significance
    
    image -
    
    Returns:
  - exportIndexedLUT
```
public final int[] exportIndexedLUT()
```
    This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue. Note that the transfer function has been applied to it.
    
    Returns:
    
    remappedLUT location where indexLUT will be exported to
  - exportIndexedLUTMin
```
public static void exportIndexedLUTMin(ModelLUT kLut,
                                       byte[] remappedLUTMin)
```
    Parameters:
    
    kLUT - model lut
    
    kTransferLine - transfer function
    
    iHeight - lut height
    
    iTable -
  - exportIndexedLUTMin
```
public static void exportIndexedLUTMin(ModelLUT kLut,
                                       byte[] remappedLUTMin,
                                       int index)
```
  - exportIndexedLUTMin
```
public static void exportIndexedLUTMin(ModelRGB kRGBT,
                                       byte[] remappedLUTMin)
```
  - exportIndexedLUT
```
public final int exportIndexedLUT(int[] arrayLUT)
```
    This is a method to export a special int array where the alpha is stored in the most significant byte, then red, green and blue. Without the transfer function applied to the LUT
    
    Parameters:
    
    arrayLUT - location where indexLUT will be exported.
    
    Returns:
    
    int 0 indictes error, and 1 indicates successful completion
  - exportRGB_LUT
```
public final float[][] exportRGB_LUT(boolean applyAlpha)
```
    This is a method to export a 2D float array of the LUT. This method is used by the ViewJComponent show methods to blend between two images.
    
    Parameters:
    
    applyAlpha - flag indicating if the LUT's alpha values should be applied
    
    Returns:
    
    float returns the RGB LUT a 2D array
  - getAlphaFunction
```
public TransferFunction getAlphaFunction()
```
    Accessor that returns the alpha transfer function.
    
    Returns:
    
    the transfer function that describes how to map the alpha values
  - getBlueFunction
```
public TransferFunction getBlueFunction()
```
    Accessor that returns the blue transfer function.
    
    Returns:
    
    the transfer function that describes how to map the blue values
  - getColor
```
public java.awt.Color getColor(int index)
```
    Gets a specific index of the LUT.
    
    Parameters:
    
    index - index of the LUT, normally 0-255
    
    Returns:
    
    LUTcolor color at index
  - getGreenFunction
```
public TransferFunction getGreenFunction()
```
    Accessor that returns the green transfer function.
    
    Returns:
    
    the transfer function that describes how to map the green values
  - getLUTType
```
public int getLUTType()
```
    Accessor to get LUT type.
    
    Returns:
    
    LUT type
  - getRedFunction
```
public TransferFunction getRedFunction()
```
    Accessor that returns the red transfer function.
    
    Returns:
    
    the transfer function that describes how to map the red values
  - getTransferFunction
```
public TransferFunction getTransferFunction()
```
    Accessor that returns the transfer function.
    
    Returns:
    
    the transfer function that describes how to remap the image intensities into display values from the LUT.
  - invertLUT
```
public void invertLUT()
```
    Inverts the LUT using the values stored in the band arrays and not the transfer functions.
  - makeBlueTransferFunctions
```
public void makeBlueTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a blue scale LUT.
  - makeBoneTransferFunctions
```
public void makeBoneTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a bone scale LUT.
  - makeCoolHotTransferFunctions
```
public void makeCoolHotTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a "Cool hot" scale LUT. (blue -> pink -> red -> orange -> yellow -> white)
  - makeCTThighTransferFunctions
```
public void makeCTThighTransferFunctions()
```
    Makes a LUT specifically for viewing CT thigh images
  - makeGrayBRTransferFunctions
```
public void makeGrayBRTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a gray scale LUT.
  - makeGrayTransferFunctions
```
public void makeGrayTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a gray scale LUT.
  - makeGreenTransferFunctions
```
public void makeGreenTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a green scale LUT.
  - makeHotMetalTransferFunctions
```
public void makeHotMetalTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a spectrum scale LUT. (black -> red -> orange -> yellow -> white)
  - makeIndexedLUT
```
public void makeIndexedLUT(int[] opacityArray)
```
    Special LUT to be used to display java image. Assumes RGB values that range between (0 and 255) are stored in the LUT;
    
    Parameters:
    
    opacityArray - DOCUMENT ME!
  - makeLUT
```
public void makeLUT(int _nColors)
```
    This method uses the A, R, G, B transfer functions to build the desired LUT.
    
    Parameters:
    
    _nColors - indicates the number of colors to used in the LUT.
  - makeRedTransferFunctions
```
public void makeRedTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a red scale LUT.
  - makeSkinTransferFunctions
```
public void makeSkinTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a skin scale LUT. (blue -> pink -> red -> orange -> yellow -> white)
  - makeSpectrumTransferFunctions
```
public void makeSpectrumTransferFunctions()
```
    Creates the R, G, and B transfer functions to produce a spectrum scale LUT. (blue -> light blue -> green -> yellow -> orange -> red)
  - makeStripedLUT
```
public void makeStripedLUT()
```
    makeStripedLUT -
  - makeCustomizedLUT
```
public void makeCustomizedLUT(java.lang.String name)
```
    makeVR with customized LUT
  - oneToZeroLUTAdjust
```
public void oneToZeroLUTAdjust()
```
    The purpose of this method is to adjust the zero index of the LUT from (1, 1, 1) to (0, 0, 0) The reason is so image A and image B are not blended throughout by default.
  - resetAlphaLine
```
public void resetAlphaLine()
```
    Resets the alpha function to be linear.
  - resetTransferLine
```
public void resetTransferLine(float min,
                              float max)
```
    Resets the transfer function to be linear.
    
    Parameters:
    
    min - DOCUMENT ME!
    
    max - DOCUMENT ME!
  - resetTransferLine
```
public void resetTransferLine(float min,
                              float imgMin,
                              float max,
                              float imgMax)
```
    Resets the transfer function to be linear.
    
    Parameters:
    
    min - float the minimum for the data range of this image type
    
    imgMin - float the actual minimum data value for the image
    
    max - float the maximum for the data range of this image type
    
    imgMax - float the actual maximum data value for the image
  - setColor
```
public void setColor(int index,
                     java.awt.Color LUTcolor)
```
    Sets a specific index of the LUT with the given color.
    
    Parameters:
    
    index - index of the LUT, normally 0-255
    
    LUTcolor - color to be placed at the LUT
  - setColor
```
public void setColor(int index,
                     int alpha,
                     int red,
                     int green,
                     int blue)
```
    Sets a specific index of the LUT with the given color and updates the compressed LUT.
    
    Parameters:
    
    index - int index of the LUT
    
    alpha - int 0-255 alpha
    
    red - int 0-255 red
    
    green - int 0-255 green
    
    blue - int 0-255 blue
  - setTransferFunction
```
public void setTransferFunction(TransferFunction txFunction)
```
    Sets the LUTs transfer function.
    
    Parameters:
    
    txFunction - DOCUMENT ME!
  - toString
```
public java.lang.String toString()
```
    displays the LUT colours and alpha values in hex.
    
    Overrides:
    
    toString in class java.lang.Object
    
    Returns:
    
    DOCUMENT ME!
  - toString
```
public java.lang.String toString(boolean displayInHex,
                                 boolean displayAlphaValues)
```
    Presents the Lookuptable by.
    
    Parameters:
    
    displayInHex - DOCUMENT ME!
    
    displayAlphaValues - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - zeroToOneLUTAdjust
```
public void zeroToOneLUTAdjust()
```
    The purpose of this method is to adjust the zero index of the LUT from (0, 0, 0) to (1, 1, 1) The reason is so image A and image B are blended throughout by default.
  - calcBand
```
private void calcBand(TransferFunction function,
                      float[] band)
```
    Calculates the color band (i.e. red, green, blue) for the LUT using the the corresponding transfer function
    
    Parameters:
    
    function - the band's transfer function
    
    band - storage location after conversion from transfer function to the band
  - getIndexedLUT
```
public int[] getIndexedLUT()
```
  - openLUTFile
```
public static final java.io.BufferedReader openLUTFile(java.lang.String lutName)
                                                throws java.io.IOException
```
    Throws:
    
    java.io.IOException

Constructor	Description
`ModelLUT()`	Default Constructor.
`ModelLUT(int _type, int _nColors, int[] dimExtents)`	Constructor.

Class ModelLUT

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.structures.ModelStorageBase

Field Summary

Fields inherited from class gov.nih.mipav.model.structures.ModelStorageBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.structures.ModelStorageBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

GRAY

SPECTRUM

HOTMETAL

COOLHOT

SKIN

STRIPED

RED

GREEN

BLUE

GRAY_BR

BONE

BlackBody

Cardiac

Flow

GEcolor

GrayRainbow

HotGreen

HotIron

HotMetal

Hue1

Hue2

ired

NIH

Rainbow

Rainbow2

Rainbow3

Ratio

Spectrum

Stern

UCLA

VR_Bones

VR_Muscles_Bones

VR_Red_Vessels

alphaLine

blueLine

greenLine

indexedLUT

nColors

redLine

remappedLUT

transferLine

type

x

customLUTsLocation

Constructor Detail

ModelLUT

ModelLUT

Method Detail

finalize

buildTDistLUT

exportIndexedLUT

exportIndexedLUTMin

exportIndexedLUTMin

exportIndexedLUTMin

exportIndexedLUT

exportRGB_LUT

getAlphaFunction

getBlueFunction

getColor

getGreenFunction

getLUTType

getRedFunction

getTransferFunction

invertLUT

makeBlueTransferFunctions

makeBoneTransferFunctions

makeCoolHotTransferFunctions

makeCTThighTransferFunctions