Package gov.nih.mipav.model.file

Class FileImageXML.MyXMLHandler

  • All Implemented Interfaces:
    org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler
    Enclosing class:
    FileImageXML
    private class FileImageXML.MyXMLHandler
extends org.xml.sax.helpers.DefaultHandler
    Used by the XML Parser to parse the xml header.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void characters​(char[] ch, int start, int length)
      Text data callback from parser.
      void endDocument()
      Do nothing.
      void endElement​(java.lang.String namespaceURI, java.lang.String localName, java.lang.String qName)
      Called by parser when the end of an element is reached in the document.
      float[][] getResolutions()
      Accessor to return the resolutions per slice as parsed from the XML header.
      void skippedEntity​(java.lang.String name)
      Do nothing but show the entity we skipped.
      void startElement​(java.lang.String namespaceURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes atts)
      Parser calls this for the beginning of each element in the document.

      • Methods inherited from class org.xml.sax.helpers.DefaultHandler

        endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, startDocument, startPrefixMapping, unparsedEntityDecl, warning

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • acpcMax

        float[] acpcMax
        DOCUMENT ME!

      • acpcMaxCount

        int acpcMaxCount
        DOCUMENT ME!

      • gradCount

        int gradCount

      • acpcMin

        float[] acpcMin
        DOCUMENT ME!

      • acpcMinCount

        int acpcMinCount
        DOCUMENT ME!

      • acpcPC

        float[] acpcPC
        DOCUMENT ME!

      • acpcPCCount

        int acpcPCCount
        DOCUMENT ME!

      • annotationVector

        java.util.Vector<VOI> annotationVector
        DOCUMENT ME!

      • annotationVOI

        VOI annotationVOI
        DOCUMENT ME!

      • axisCount

        int axisCount
        DOCUMENT ME!

      • currentKey

        java.lang.String currentKey
        DOCUMENT ME!

      • elementBuffer

        java.lang.String elementBuffer
        DOCUMENT ME!

      • extentsCount

        int extentsCount
        DOCUMENT ME!

      • firstResolutions

        float[] firstResolutions
        DOCUMENT ME!

      • isColor

        boolean isColor
        DOCUMENT ME!

      • matrixVector

        java.util.Vector<TransMatrix> matrixVector

      • matrixCol

        int matrixCol
        DOCUMENT ME!

      • matrixRow

        int matrixRow
        DOCUMENT ME!

      • nDimensions

        int nDimensions
        DOCUMENT ME!

      • numInvestigators

        int numInvestigators
        DOCUMENT ME!

      • numParameters

        int numParameters
        DOCUMENT ME!

      • origAC

        float[] origAC
        DOCUMENT ME!

      • origACCount

        int origACCount
        DOCUMENT ME!

      • origDim

        int[] origDim
        DOCUMENT ME!

      • origDimCount

        int origDimCount
        DOCUMENT ME!

      • origOrigin

        float[] origOrigin

      • origOriginCount

        int origOriginCount

      • origOrientation

        float[] origOrientation
        DOCUMENT ME!

      • origOrientationCount

        int origOrientationCount
        DOCUMENT ME!

      • origPC

        float[] origPC
        DOCUMENT ME!

      • origPCCount

        int origPCCount
        DOCUMENT ME!

      • origRes

        float[] origRes
        DOCUMENT ME!

      • origResCount

        int origResCount
        DOCUMENT ME!

      • resInfoCount

        int resInfoCount
        DOCUMENT ME!

      • resolutions

        float[][] resolutions
        DOCUMENT ME!

      • resolutionsCount

        int resolutionsCount
        DOCUMENT ME!

      • startCount

        int startCount
        DOCUMENT ME!

      • thumbnailBuffer

        int[] thumbnailBuffer
        DOCUMENT ME!

      • thumbnailBufferIndex

        int thumbnailBufferIndex
        DOCUMENT ME!

      • thumbnailXDim

        int thumbnailXDim
        DOCUMENT ME!

      • thumbnailYDim

        int thumbnailYDim
        DOCUMENT ME!

      • tlrcRes

        float[] tlrcRes
        DOCUMENT ME!

      • tlrcResCount

        int tlrcResCount
        DOCUMENT ME!

      • unitsCount

        int unitsCount
        DOCUMENT ME!

    • Constructor Detail

      • MyXMLHandler

        public MyXMLHandler​(FileInfoImageXML fInfo,
                    java.util.Vector<VOI> anVector,
                    java.util.Vector<TransMatrix> mVector,
                    TalairachTransformInfo tal)
        Creates a new MyXMLHandler object.
        Parameters:
        fInfo - DOCUMENT ME!
        hisVector - DOCUMENT ME!
        anVector - DOCUMENT ME!
        tal - DOCUMENT ME!

    • Method Detail

      • characters

        public void characters​(char[] ch,
                       int start,
                       int length)
        Text data callback from parser. If the parser is not validating, this method can report whitespace. We ignore strings that are entirely whitespace.
        Specified by:
        characters in interface org.xml.sax.ContentHandler
        Overrides:
        characters in class org.xml.sax.helpers.DefaultHandler
        Parameters:
        ch - Character array
        start - Start of data in array.
        length - Length of data in array.

      • endDocument

        public void endDocument()
                 throws org.xml.sax.SAXException
        Do nothing.
        Specified by:
        endDocument in interface org.xml.sax.ContentHandler
        Overrides:
        endDocument in class org.xml.sax.helpers.DefaultHandler
        Throws:
        org.xml.sax.SAXException - never happens

      • endElement

        public void endElement​(java.lang.String namespaceURI,
                       java.lang.String localName,
                       java.lang.String qName)
                throws org.xml.sax.SAXException
        Called by parser when the end of an element is reached in the document.
        Specified by:
        endElement in interface org.xml.sax.ContentHandler
        Overrides:
        endElement in class org.xml.sax.helpers.DefaultHandler
        Parameters:
        namespaceURI - the namespace uri
        localName - the element name
        qName - the qualified name
        Throws:
        org.xml.sax.SAXException - if a problem is encountered during parsing

      • getResolutions

        public float[][] getResolutions()
        Accessor to return the resolutions per slice as parsed from the XML header.
        Returns:
        double array containing resolutions of each slice

      • skippedEntity

        public void skippedEntity​(java.lang.String name)
        Do nothing but show the entity we skipped.
        Specified by:
        skippedEntity in interface org.xml.sax.ContentHandler
        Overrides:
        skippedEntity in class org.xml.sax.helpers.DefaultHandler
        Parameters:
        name - the skipped entity name

      • startElement

        public void startElement​(java.lang.String namespaceURI,
                         java.lang.String localName,
                         java.lang.String qName,
                         org.xml.sax.Attributes atts)
                  throws org.xml.sax.SAXException
        Parser calls this for the beginning of each element in the document.
        Specified by:
        startElement in interface org.xml.sax.ContentHandler
        Overrides:
        startElement in class org.xml.sax.helpers.DefaultHandler
        Parameters:
        namespaceURI - the namespace uri
        localName - the element name
        qName - the qualified name
        atts - the attached attributes
        Throws:
        org.xml.sax.SAXException - if a problem is encountered during parsing