Package gov.nih.mipav.model.file

Class FileImageXML.MyXMLHandler

java.lang.Object

org.xml.sax.helpers.DefaultHandler

gov.nih.mipav.model.file.FileImageXML.MyXMLHandler

All Implemented Interfaces:

ContentHandler, DTDHandler, EntityResolver, ErrorHandler

Enclosing class:

FileImageXML

private class FileImageXML.MyXMLHandler
extends DefaultHandler

Used by the XML Parser to parse the xml header.

Field Summary

Fields

Modifier and Type	Field	Description
(package private) float[]	acpcMax	DOCUMENT ME!
(package private) int	acpcMaxCount	DOCUMENT ME!
(package private) float[]	acpcMin	DOCUMENT ME!
(package private) int	acpcMinCount	DOCUMENT ME!
(package private) float[]	acpcPC	DOCUMENT ME!
(package private) int	acpcPCCount	DOCUMENT ME!
(package private) Vector<VOI>	annotationVector	DOCUMENT ME!
(package private) VOI	annotationVOI	DOCUMENT ME!
(package private) int	axisCount	DOCUMENT ME!
(package private) String	currentKey	DOCUMENT ME!
(package private) String	elementBuffer	DOCUMENT ME!
(package private) int	extentsCount	DOCUMENT ME!
(package private) FileInfoImageXML	fileInfo	DOCUMENT ME!
(package private) float[]	firstResolutions	DOCUMENT ME!
(package private) int	gradCount
(package private) boolean	isColor	DOCUMENT ME!
(package private) TransMatrix	matrix	DOCUMENT ME!
(package private) int	matrixCol	DOCUMENT ME!
(package private) int	matrixRow	DOCUMENT ME!
(package private) Vector<TransMatrix>	matrixVector
(package private) int	nDimensions	DOCUMENT ME!
(package private) int	numInvestigators	DOCUMENT ME!
(package private) int	numParameters	DOCUMENT ME!
(package private) float[]	origAC	DOCUMENT ME!
(package private) int	origACCount	DOCUMENT ME!
(package private) int[]	origDim	DOCUMENT ME!
(package private) int	origDimCount	DOCUMENT ME!
(package private) float[]	origOrientation	DOCUMENT ME!
(package private) int	origOrientationCount	DOCUMENT ME!
(package private) float[]	origOrigin
(package private) int	origOriginCount
(package private) float[]	origPC	DOCUMENT ME!
(package private) int	origPCCount	DOCUMENT ME!
(package private) float[]	origRes	DOCUMENT ME!
(package private) int	origResCount	DOCUMENT ME!
(package private) int	resInfoCount	DOCUMENT ME!
(package private) float[][]	resolutions	DOCUMENT ME!
(package private) int	resolutionsCount	DOCUMENT ME!
(package private) int	startCount	DOCUMENT ME!
(package private) TalairachTransformInfo	talairach	DOCUMENT ME!
(package private) int[]	thumbnailBuffer	DOCUMENT ME!
(package private) int	thumbnailBufferIndex	DOCUMENT ME!
(package private) int	thumbnailXDim	DOCUMENT ME!
(package private) int	thumbnailYDim	DOCUMENT ME!
(package private) float[]	tlrcRes	DOCUMENT ME!
(package private) int	tlrcResCount	DOCUMENT ME!
(package private) int	unitsCount	DOCUMENT ME!

Constructor Summary

Constructors

Constructor	Description
MyXMLHandler(FileInfoImageXML fInfo, Vector<VOI> anVector, Vector<TransMatrix> mVector, TalairachTransformInfo tal)	Creates a new MyXMLHandler object.

Method Summary

Modifier and Type	Method	Description
void	characters(char[] ch, int start, int length)	Text data callback from parser.
void	endDocument()	Do nothing.
void	endElement(String namespaceURI, String localName, String qName)	Called by parser when the end of an element is reached in the document.
float[][]	getResolutions()	Accessor to return the resolutions per slice as parsed from the XML header.
void	skippedEntity(String name)	Do nothing but show the entity we skipped.
void	startElement(String namespaceURI, String localName, String qName, Attributes atts)	Parser calls this for the beginning of each element in the document.

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, startDocument, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.xml.sax.ContentHandler

declaration

Field Details

acpcMax

float[] acpcMax

DOCUMENT ME!

acpcMaxCount

int acpcMaxCount

DOCUMENT ME!

gradCount

int gradCount

acpcMin

float[] acpcMin

DOCUMENT ME!

acpcMinCount

int acpcMinCount

DOCUMENT ME!

acpcPC

float[] acpcPC

DOCUMENT ME!

acpcPCCount

int acpcPCCount

DOCUMENT ME!

annotationVector

Vector<VOI> annotationVector

DOCUMENT ME!

annotationVOI

VOI annotationVOI

DOCUMENT ME!

axisCount

int axisCount

DOCUMENT ME!

currentKey

String currentKey

DOCUMENT ME!

elementBuffer

String elementBuffer

DOCUMENT ME!

extentsCount

int extentsCount

DOCUMENT ME!

fileInfo

FileInfoImageXML fileInfo

DOCUMENT ME!

firstResolutions

float[] firstResolutions

DOCUMENT ME!

isColor

boolean isColor

DOCUMENT ME!

matrixVector

Vector<TransMatrix> matrixVector

matrix

TransMatrix matrix

DOCUMENT ME!

matrixCol

int matrixCol

DOCUMENT ME!

matrixRow

int matrixRow

DOCUMENT ME!

nDimensions

int nDimensions

DOCUMENT ME!

numInvestigators

int numInvestigators

DOCUMENT ME!

numParameters

int numParameters

DOCUMENT ME!

origAC

float[] origAC

DOCUMENT ME!

origACCount

int origACCount

DOCUMENT ME!

origDim

int[] origDim

DOCUMENT ME!

origDimCount

int origDimCount

DOCUMENT ME!

origOrigin

float[] origOrigin

origOriginCount

int origOriginCount

origOrientation

float[] origOrientation

DOCUMENT ME!

origOrientationCount

int origOrientationCount

DOCUMENT ME!

origPC

float[] origPC

DOCUMENT ME!

origPCCount

int origPCCount

DOCUMENT ME!

origRes

float[] origRes

DOCUMENT ME!

origResCount

int origResCount

DOCUMENT ME!

resInfoCount

int resInfoCount

DOCUMENT ME!

resolutions

float[][] resolutions

DOCUMENT ME!

resolutionsCount

int resolutionsCount

DOCUMENT ME!

startCount

int startCount

DOCUMENT ME!

talairach

TalairachTransformInfo talairach

DOCUMENT ME!

thumbnailBuffer

int[] thumbnailBuffer

DOCUMENT ME!

thumbnailBufferIndex

int thumbnailBufferIndex

DOCUMENT ME!

thumbnailXDim

int thumbnailXDim

DOCUMENT ME!

thumbnailYDim

int thumbnailYDim

DOCUMENT ME!

tlrcRes

float[] tlrcRes

DOCUMENT ME!

tlrcResCount

int tlrcResCount

DOCUMENT ME!

unitsCount

int unitsCount

DOCUMENT ME!

Constructor Details

MyXMLHandler

public MyXMLHandler(FileInfoImageXML fInfo,
 Vector<VOI> anVector,
 Vector<TransMatrix> mVector,
 TalairachTransformInfo tal)

Creates a new MyXMLHandler object.

Parameters:

fInfo - DOCUMENT ME!

anVector - DOCUMENT ME!

tal - DOCUMENT ME!

hisVector - DOCUMENT ME!

Method Details

characters

public void characters(char[] ch,
 int start,
 int length)

Text data callback from parser. If the parser is not validating, this method can report whitespace. We ignore strings that are entirely whitespace.

Specified by:

characters in interface ContentHandler

Overrides:

characters in class DefaultHandler

Parameters:

ch - Character array

start - Start of data in array.

length - Length of data in array.

endDocument

public void endDocument()
                 throws SAXException

Do nothing.

Specified by:

endDocument in interface ContentHandler

Overrides:

endDocument in class DefaultHandler

Throws:

SAXException - never happens

endElement

public void endElement(String namespaceURI,
 String localName,
 String qName)
                throws SAXException

Called by parser when the end of an element is reached in the document.

Specified by:

endElement in interface ContentHandler

Overrides:

endElement in class DefaultHandler

Parameters:

namespaceURI - the namespace uri

localName - the element name

qName - the qualified name

Throws:

SAXException - if a problem is encountered during parsing

getResolutions

public float[][] getResolutions()

Accessor to return the resolutions per slice as parsed from the XML header.

Returns:

double array containing resolutions of each slice

skippedEntity

public void skippedEntity(String name)

Do nothing but show the entity we skipped.

Specified by:

skippedEntity in interface ContentHandler

Overrides:

skippedEntity in class DefaultHandler

Parameters:

name - the skipped entity name

startElement

public void startElement(String namespaceURI,
 String localName,
 String qName,
 Attributes atts)
                  throws SAXException

Parser calls this for the beginning of each element in the document.

Specified by:

startElement in interface ContentHandler

Overrides:

startElement in class DefaultHandler

Parameters:

namespaceURI - the namespace uri

localName - the element name

qName - the qualified name

atts - the attached attributes

Throws:

SAXException - if a problem is encountered during parsing