Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmMosaicToSlices

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmMosaicToSlices

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmMosaicToSlices
extends AlgorithmBase

Algorithm requires input of 2D or 3D mosaics. Based on the dimension of the mosaic image, the algorithm converts 2D mosaics to 3D slices and 3D mosaics to 4D slices (note: slice numbers are specified by the user).

Version:

0.2 July 25, 2011, 0.1 September 2, 2010

Author:

Beth Tyrie, William Gandler

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private DTIParameters	newImDTIparams
private DTIParameters	orgImDTIparams
private FileInfoDicom	srcDicomInfo
private ModelImage	srcImage	Source image

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmMosaicToSlices(ModelImage srcIm, ModelImage dest)	Creates a new AlgorithmMosaicToSlices object.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares this class for destruction.
ModelImage	getResultImage()	Accessor that returns the result image.
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

srcImage

private ModelImage srcImage

Source image

orgImDTIparams

private DTIParameters orgImDTIparams

newImDTIparams

private DTIParameters newImDTIparams

srcDicomInfo

private FileInfoDicom srcDicomInfo

Constructor Details

AlgorithmMosaicToSlices

public AlgorithmMosaicToSlices(ModelImage srcIm,
 ModelImage dest)

Creates a new AlgorithmMosaicToSlices object.

Parameters:

srcIm - source image model

dest - destination image

Method Details

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

getResultImage

public ModelImage getResultImage()

Accessor that returns the result image.

Returns:

Result image.

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase