Class JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- java.awt.Window
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- java.awt.Dialog
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- javax.swing.JDialog
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- gov.nih.mipav.view.dialogs.JDialogBase
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- gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
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- All Implemented Interfaces:
AlgorithmInterface
,DialogDefaultsInterface
,java.awt.event.ActionListener
,java.awt.event.FocusListener
,java.awt.event.ItemListener
,java.awt.event.WindowListener
,java.awt.image.ImageObserver
,java.awt.MenuContainer
,java.io.Serializable
,java.util.EventListener
,javax.accessibility.Accessible
,javax.swing.RootPaneContainer
,javax.swing.WindowConstants
public class JDialogProstateSPIEcancerChallenge_HEDmap_image_alone extends JDialogBase implements AlgorithmInterface
This class generates the VOI contours from HED predicted energy maps. This is a try-and-error approach to use MRI image alone. For backup purpose only.- Author:
- Ruida Cheng
- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
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Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog
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Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
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Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
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Field Summary
Fields Modifier and Type Field Description private javax.swing.JButton
buttonKeyImage
private javax.swing.JButton
buttonSaveImage
(package private) java.util.Hashtable<java.lang.Integer,ModelImage>
imageHashtable
(package private) java.util.Hashtable<java.lang.String,java.util.Vector<java.lang.String>>
imageNameHashtable
private javax.swing.JPanel
imageSelectionPanel
(package private) java.util.Hashtable<java.lang.Integer,java.util.Vector<java.lang.String>>
imageTable
private java.util.Vector<java.lang.String>
keyImageVector5
private java.util.Vector<java.lang.String>
keyImageVOIVector5
private javax.swing.JLabel
labelKeyImage
key image directory.private javax.swing.JLabel
labelSaveImage
saved 2D slices atlas dir.(package private) java.util.Hashtable<java.lang.Integer,java.util.Vector<java.lang.String>>
maskImageTable
(package private) java.util.Hashtable<java.lang.Integer,java.util.Vector<ModelImage>>
maskTable
(package private) java.util.Hashtable<java.lang.Integer,java.util.Vector<java.lang.String>>
newImageTable
private javax.swing.JFileChooser
saveImageChooser
private java.lang.String
saveImageDirectory
private static long
serialVersionUID
private javax.swing.JTextField
textFieldKeyImage
private javax.swing.JTextField
textFieldSaveImage
private ViewUserInterface
UI
The main user interface.(package private) java.util.Hashtable<java.lang.String,VOI>
voiHashtable
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager
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Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled
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Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
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Constructor Summary
Constructors Constructor Description JDialogProstateSPIEcancerChallenge_HEDmap_image_alone(java.awt.Frame theParentFrame)
Constructor.
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
actionPerformed(java.awt.event.ActionEvent event)
Dialog local actionPerformed handler.void
algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented.void
buildKeyImagePanel()
Panel contains both the 3D image dir and saved 2D slices atlas dir.ModelImage
calculateTransform_resol_fix_2D(ModelImage image, float resolution)
ModelImage
calculateTransform_resol_fix_3D(ModelImage image, float resolution)
void
callAlgorithm()
Driver function to read image and VOIs, and convert each 3D image to 2D slices.void
disposeLocal()
dispose memoryprivate void
generateContours()
void
init()
Initial panelvoid
loadFiles()
load image files and voi filesstatic void
pause()
private void
processDir_folder_5(java.io.File dir, int index)
void
readFile()
private void
readKeyImageDir()
Read 3D images atlas directory.private void
recordSaveImageDir()
Let user specify the saved 2D slices atlas, record the save directory.void
smoothVOI30(ModelImage maskImage, ModelImage resultImage)
private void
sortImageTable()
void
sortKeyImage_5()
private void
traverse_DicomLayer(java.io.File lastLayer, java.lang.String hashID)
private void
traverse_firstLayer(java.io.File firstDir, java.lang.String child)
private void
traverse_folder_5(java.io.File dir)
private void
traverse_folder_5(java.io.File dir, int index)
private void
traverse_Layer(java.io.File dir)
private void
traverse_scanLayer(java.io.File secondLayer, java.lang.String hashID)
private void
traverse_secondLayer(java.io.File firstLayer, java.lang.String hashID)
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Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
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Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
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Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
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Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
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Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Field Detail
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serialVersionUID
private static final long serialVersionUID
- See Also:
- Constant Field Values
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UI
private ViewUserInterface UI
The main user interface.
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labelKeyImage
private javax.swing.JLabel labelKeyImage
key image directory.
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textFieldKeyImage
private javax.swing.JTextField textFieldKeyImage
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buttonKeyImage
private javax.swing.JButton buttonKeyImage
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imageSelectionPanel
private javax.swing.JPanel imageSelectionPanel
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keyImageVector5
private java.util.Vector<java.lang.String> keyImageVector5
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keyImageVOIVector5
private java.util.Vector<java.lang.String> keyImageVOIVector5
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labelSaveImage
private javax.swing.JLabel labelSaveImage
saved 2D slices atlas dir.
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textFieldSaveImage
private javax.swing.JTextField textFieldSaveImage
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buttonSaveImage
private javax.swing.JButton buttonSaveImage
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saveImageChooser
private javax.swing.JFileChooser saveImageChooser
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saveImageDirectory
private java.lang.String saveImageDirectory
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imageTable
java.util.Hashtable<java.lang.Integer,java.util.Vector<java.lang.String>> imageTable
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newImageTable
java.util.Hashtable<java.lang.Integer,java.util.Vector<java.lang.String>> newImageTable
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maskTable
java.util.Hashtable<java.lang.Integer,java.util.Vector<ModelImage>> maskTable
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maskImageTable
java.util.Hashtable<java.lang.Integer,java.util.Vector<java.lang.String>> maskImageTable
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imageHashtable
java.util.Hashtable<java.lang.Integer,ModelImage> imageHashtable
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voiHashtable
java.util.Hashtable<java.lang.String,VOI> voiHashtable
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imageNameHashtable
java.util.Hashtable<java.lang.String,java.util.Vector<java.lang.String>> imageNameHashtable
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Method Detail
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disposeLocal
public void disposeLocal()
dispose memory
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actionPerformed
public void actionPerformed(java.awt.event.ActionEvent event)
Dialog local actionPerformed handler.- Specified by:
actionPerformed
in interfacejava.awt.event.ActionListener
- Overrides:
actionPerformed
in classJDialogBase
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sortImageTable
private void sortImageTable()
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pause
public static void pause()
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recordSaveImageDir
private void recordSaveImageDir()
Let user specify the saved 2D slices atlas, record the save directory.
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readKeyImageDir
private void readKeyImageDir()
Read 3D images atlas directory.
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traverse_Layer
private void traverse_Layer(java.io.File dir)
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traverse_firstLayer
private void traverse_firstLayer(java.io.File firstDir, java.lang.String child)
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traverse_secondLayer
private void traverse_secondLayer(java.io.File firstLayer, java.lang.String hashID)
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traverse_scanLayer
private void traverse_scanLayer(java.io.File secondLayer, java.lang.String hashID)
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traverse_DicomLayer
private void traverse_DicomLayer(java.io.File lastLayer, java.lang.String hashID)
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traverse_folder_5
private void traverse_folder_5(java.io.File dir)
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traverse_folder_5
private void traverse_folder_5(java.io.File dir, int index)
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processDir_folder_5
private void processDir_folder_5(java.io.File dir, int index)
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sortKeyImage_5
public void sortKeyImage_5()
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algorithmPerformed
public void algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.- Specified by:
algorithmPerformed
in interfaceAlgorithmInterface
- Parameters:
algorithm
- Algorithm that caused the event.
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callAlgorithm
public void callAlgorithm()
Driver function to read image and VOIs, and convert each 3D image to 2D slices.
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generateContours
private void generateContours()
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calculateTransform_resol_fix_3D
public ModelImage calculateTransform_resol_fix_3D(ModelImage image, float resolution)
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calculateTransform_resol_fix_2D
public ModelImage calculateTransform_resol_fix_2D(ModelImage image, float resolution)
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smoothVOI30
public void smoothVOI30(ModelImage maskImage, ModelImage resultImage)
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loadFiles
public void loadFiles()
load image files and voi files
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readFile
public void readFile()
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init
public void init()
Initial panel
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buildKeyImagePanel
public void buildKeyImagePanel()
Panel contains both the 3D image dir and saved 2D slices atlas dir.
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