Package gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Class JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.JDialogProstateSPIEcancerChallenge_HEDmap_image_alone
All Implemented Interfaces:
AlgorithmInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogProstateSPIEcancerChallenge_HEDmap_image_alone extends JDialogBase implements AlgorithmInterface
This class generates the VOI contours from HED predicted energy maps. This is a try-and-error approach to use MRI image alone. For backup purpose only.
Author:
Ruida Cheng
See Also:

  • Field Details

  • Constructor Details

    • JDialogProstateSPIEcancerChallenge_HEDmap_image_alone

      public JDialogProstateSPIEcancerChallenge_HEDmap_image_alone(Frame theParentFrame)
      Constructor.
      Parameters:
      theParentFrame -

  • Method Details

    • disposeLocal

      public void disposeLocal()
      dispose memory

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Dialog local actionPerformed handler.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase

    • sortImageTable

      private void sortImageTable()

    • pause

      public static void pause()

    • recordSaveImageDir

      private void recordSaveImageDir()
      Let user specify the saved 2D slices atlas, record the save directory.

    • readKeyImageDir

      private void readKeyImageDir()
      Read 3D images atlas directory.

    • traverse_Layer

      private void traverse_Layer(File dir)

    • traverse_firstLayer

      private void traverse_firstLayer(File firstDir, String child)

    • traverse_secondLayer

      private void traverse_secondLayer(File firstLayer, String hashID)

    • traverse_scanLayer

      private void traverse_scanLayer(File secondLayer, String hashID)

    • traverse_DicomLayer

      private void traverse_DicomLayer(File lastLayer, String hashID)

    • traverse_folder_5

      private void traverse_folder_5(File dir)

    • traverse_folder_5

      private void traverse_folder_5(File dir, int index)

    • processDir_folder_5

      private void processDir_folder_5(File dir, int index)

    • sortKeyImage_5

      public void sortKeyImage_5()

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • callAlgorithm

      public void callAlgorithm()
      Driver function to read image and VOIs, and convert each 3D image to 2D slices.

    • generateContours

      private void generateContours()

    • calculateTransform_resol_fix_3D

      public ModelImage calculateTransform_resol_fix_3D(ModelImage image, float resolution)

    • calculateTransform_resol_fix_2D

      public ModelImage calculateTransform_resol_fix_2D(ModelImage image, float resolution)

    • smoothVOI30

      public void smoothVOI30(ModelImage maskImage, ModelImage resultImage)

    • loadFiles

      public void loadFiles()
      load image files and voi files

    • readFile

      public void readFile()

    • init

      public void init()
      Initial panel

    • buildKeyImagePanel

      public void buildKeyImagePanel()
      Panel contains both the 3D image dir and saved 2D slices atlas dir.