Package gov.nih.mipav.view

Class ViewJPanelLUT

  • All Implemented Interfaces:
    HistoLUTParent, java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener
    public class ViewJPanelLUT
extends javax.swing.JPanel
implements java.awt.event.ItemListener, java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.awt.event.KeyListener, HistoLUTParent
    Deprecated.
    Panel which contains the LUT / HistoLUT components and related GUI components.
    Version:
    1.0
    Author:
    Evan McCreedy
    See Also:
    JFrameHistogram, Serialized Form

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JPanel

        javax.swing.JPanel.AccessibleJPanel

      • Nested classes/interfaces inherited from class javax.swing.JComponent

        javax.swing.JComponent.AccessibleJComponent

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Field Summary

      Fields 
      Modifier and Type Field Description
      private JDialogCT ctDialogA
      Deprecated.
      DOCUMENT ME!
      private JDialogCT ctDialogB
      Deprecated.
      DOCUMENT ME!
      private int cursorIndex
      Deprecated.
      Active mouse cursor index of the imageA, B and GM image A, B.
      private int cursorIndexB
      Deprecated.
      Active mouse cursor index of the imageA, B and GM image A, B.
      static java.lang.String customLUTsLocation
      Deprecated. 
      private boolean entireFlag
      Deprecated.
      DOCUMENT ME!
      private ModelHistogram histogramA
      Deprecated.
      DOCUMENT ME!
      private ModelHistogram histogramB
      Deprecated.
      DOCUMENT ME!
      private ViewJPanelHistoLUT histoPanelA
      Deprecated.
      DOCUMENT ME!
      private ViewJPanelHistoLUT histoPanelB
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField indexColorATextF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField indexColorBTextF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JCheckBox interpCheckBoxA
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JCheckBox interpCheckBoxB
      Deprecated.
      DOCUMENT ME!
      private java.util.Hashtable<java.lang.Integer,​javax.swing.JLabel> labelsTable
      Deprecated.
      Histogram dialog slider labels of the imageA, B and GM imageA, B.
      private java.util.Hashtable<java.lang.Integer,​javax.swing.JLabel> labelsTableB
      Deprecated.
      Histogram dialog slider labels of the imageA, B and GM imageA, B.
      private javax.swing.JCheckBox logCheckBoxA
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JCheckBox logCheckBoxB
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JLabel mouseLabel
      Deprecated.
      The opacity slider label.
      private javax.swing.JLabel mouseLabelB
      Deprecated.
      The opacity slider label.
      private javax.swing.JSlider mouseSlider
      Deprecated.
      Opacity X scale sliders.
      private javax.swing.JSlider mouseSliderB
      Deprecated.
      Opacity X scale sliders.
      private javax.swing.JLabel[] mouseSliderLabels
      Deprecated.
      The labels below the opacity slider.
      private javax.swing.JLabel[] mouseSliderLabelsB
      Deprecated.
      The labels below the opacity slider.
      private javax.swing.JTextField nColorsATextF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField nColorsBTextF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JCheckBox oneBasedLUTCheckBoxImageB
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JComboBox outputBox
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JComboBox outputBoxB
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JPanel panelA
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JPanel panelB
      Deprecated.
      DOCUMENT ME!
      private ViewJFrameHistoLUT panelParent
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField rangeText
      Deprecated.
      X range text field in the imageA, B histogram dialog.
      private javax.swing.JTextField rangeTextB
      Deprecated.
      X range text field in the imageA, B histogram dialog.
      private float rangeX
      Deprecated.
      X range value of the imageA, B and GM imageA, B.
      private float rangeXB
      Deprecated.
      X range value of the imageA, B and GM imageA, B.
      private int scaleRangeA
      Deprecated.
      Scale range value according to the image min and max.
      private int scaleRangeB
      Deprecated.
      Scale range value according to the image min and max.
      private static long serialVersionUID
      Deprecated.
      Use serialVersionUID for interoperability.
      private javax.swing.JTabbedPane tabbedPane
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField threshFillBF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField threshFillF
      Deprecated.
      threshold related.
      private javax.swing.JTextField threshLowerBF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField threshLowerF
      Deprecated.
      threshold related.
      private javax.swing.JTextField threshUpperBF
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JTextField threshUpperF
      Deprecated.
      threshold related.
      private javax.swing.JToolBar toolBarBottom
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JToolBar toolBarCenter
      Deprecated.
      center toolbar
      private ViewToolBarBuilder toolBarObj
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JToolBar toolBarThreshold
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JToolBar toolBarTop
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JCheckBox updateCheckBoxA
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JCheckBox updateCheckBoxB
      Deprecated.
      DOCUMENT ME!
      private javax.swing.JLabel voxelVolumeLabel
      Deprecated.
      Used to display the volume or area of the voxels/pixels between the upper and lower bounds.
      private javax.swing.JTextField xRangeTextA
      Deprecated.
      X range text field in the imageA, B and GM image A, B histogram dialog.
      private javax.swing.JTextField xRangeTextB
      Deprecated.
      X range text field in the imageA, B and GM image A, B histogram dialog.
      private javax.swing.JTextField yRangeTextA
      Deprecated.
      Y range text field in the imageA, B and GM image A, B histogram dialog.
      private javax.swing.JTextField yRangeTextB
      Deprecated.
      Y range text field in the imageA, B and GM image A, B histogram dialog.

      • Fields inherited from class javax.swing.JComponent

        listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

      • Fields inherited from class java.awt.Component

        accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

      • Fields inherited from interface java.awt.image.ImageObserver

        ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods Deprecated Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Deprecated.
      Calls various methods depending on the action.
      static javax.swing.JToolBar buildLUTSelectionList​(java.awt.event.ActionListener listener)
      Deprecated. 
      private void buildPanelA​(ModelImage image, ModelLUT LUT, boolean entireFlag)
      Deprecated.
      Method that displays the histogram and LUT and other controls to manipulate the LUT.
      private void buildPanelB​(ModelImage image, ModelLUT LUT, boolean entireFlag)
      Deprecated.
      Method that displays the histogram and LUT and other controls to manipulate the LUT.
      private void calcHistogram​(int imageAorB, boolean entireFlag, boolean progressFlag)
      Deprecated.
      Calculates histogram for the image(s).
      private void calcThreshold()
      Deprecated.
      Calculates the thresholded image based on the parameters of the threshold transfer function.
      private void calculateThreshold()
      Deprecated.
      Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.
      private void calculateThreshold​(float lower, float upper)
      Deprecated.
      Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
      private void calculateThresholdArea​(float lower, float upper)
      Deprecated.
      Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
      private void calculateThresholdVolume​(float lower, float upper)
      Deprecated.
      Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
      void clearVoxelLabel()
      Deprecated.
      DOCUMENT ME!
      void dispose()
      Deprecated.
      Disposes of components and frame.
      void dragPoint​(java.awt.event.MouseEvent mouseEvent)
      Deprecated.
      Placeholder.
      private static java.util.Vector<java.lang.String> getCustomLUTList()
      Deprecated.
       
      ViewJComponentHLUTBase getHistoLUTComponentA()
      Deprecated.
      Get the histogram component for imageA.
      ViewJComponentHLUTBase getHistoLUTComponentB()
      Deprecated.
      Get the histogram component for imageB.
      float getLowerThreshold()
      Deprecated.
      Returns the lower threshold value.
      ModelLUT getLUTa()
      Deprecated.
      Get the imageA histo component lut.
      ModelLUT getLUTb()
      Deprecated.
      Get the imageB histo component lut.
      ViewJComponentLUT getLUTComponentA()
      Deprecated.
      Get the imageA LUT.
      ViewJComponentLUT getLUTComponentB()
      Deprecated.
      Get the imageB LUT.
      JDialogRecordLUT getLUTRecorder()
      Deprecated.
      Get the LUT recorder reference.
      float getUpperThreshold()
      Deprecated.
      Returns the upper threshold value.
      void initGUI()
      Deprecated.
      Set up the panel components.
      boolean isImageASelected()
      Deprecated.
      Returns whether the imageA LUT panel is the one being worked on.
      boolean isImageBSelected()
      Deprecated.
      Returns whether the imageB LUT panel is the one being worked on.
      boolean isImageUpdate()
      Deprecated.
      Indicates if real-time update of the image should take place.
      private boolean isLUT1Based​(ModelLUT LUT)
      Deprecated.
      end HistoLUTParent.
      void itemStateChanged​(java.awt.event.ItemEvent event)
      Deprecated.
      Sets the flags for the checkboxes.
      void keyPressed​(java.awt.event.KeyEvent e)
      Deprecated.
      Unchanged.
      void keyReleased​(java.awt.event.KeyEvent e)
      Deprecated.
      Unchanged.
      void keyTyped​(java.awt.event.KeyEvent e)
      Deprecated.
      If the ENTER key is hit while in threshold boxes, update the LUT's threshold (for dual threshold).
      static java.io.BufferedReader openLUTFile​(java.lang.String lutName)
      Deprecated. 
      void removeHistoLUTb()
      Deprecated.
      Removes the tabbed pane for the histogram of image B.
      void setAllOff()
      Deprecated.
      Placeholder.
      void setLUT​(ModelLUT newLUT)
      Deprecated.
      Replaces the LUT and builds a new LUT component.
      void setLUTa​(ModelLUT lut)
      Deprecated.
      Change the histogram component LUT.
      void setLUTb​(ModelLUT lut)
      Deprecated.
      Change the histogram component LUT.
      void setNColors​(int value)
      Deprecated.
      Change the text field showing the number of colors.
      void setRangeText​(float x, float y, int _index)
      Deprecated.
      Set the range value of the text field.
      void stateChanged​(javax.swing.event.ChangeEvent e)
      Deprecated.
      Sets values based on knob along slider.
      void updateComponentLUT()
      Deprecated.
      Placeholder.
      void updateFrames​(boolean flag)
      Deprecated.
      Update all of the image frames that display the image this histo lut is for.
      void updateHistoLUT​(ModelImage _imageA, ModelLUT _LUTa, ModelImage _imageB, ModelLUT _LUTb, boolean progressFlag)
      Deprecated.
      This method is called to update the histogram(s) displayed in each tabbed pane of the frame.
      void updateLUTPositionString​(java.lang.String str)
      Deprecated.
      Placeholder.
      void updateThresholdFields​(float lower, float upper)
      Deprecated.
      Method to update the threshold text fields when the lower or upper threshold changes.

      • Methods inherited from class javax.swing.JPanel

        getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

      • Methods inherited from class javax.swing.JComponent

        addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • serialVersionUID

        private static final long serialVersionUID
        Deprecated.
        Use serialVersionUID for interoperability.
        See Also:
        Constant Field Values

      • ctDialogA

        private JDialogCT ctDialogA
        Deprecated.
        DOCUMENT ME!

      • ctDialogB

        private JDialogCT ctDialogB
        Deprecated.
        DOCUMENT ME!

      • cursorIndex

        private int cursorIndex
        Deprecated.
        Active mouse cursor index of the imageA, B and GM image A, B.

      • cursorIndexB

        private int cursorIndexB
        Deprecated.
        Active mouse cursor index of the imageA, B and GM image A, B.

      • entireFlag

        private boolean entireFlag
        Deprecated.
        DOCUMENT ME!

      • histogramA

        private ModelHistogram histogramA
        Deprecated.
        DOCUMENT ME!

      • histogramB

        private ModelHistogram histogramB
        Deprecated.
        DOCUMENT ME!

      • indexColorATextF

        private javax.swing.JTextField indexColorATextF
        Deprecated.
        DOCUMENT ME!

      • indexColorBTextF

        private javax.swing.JTextField indexColorBTextF
        Deprecated.
        DOCUMENT ME!

      • interpCheckBoxA

        private javax.swing.JCheckBox interpCheckBoxA
        Deprecated.
        DOCUMENT ME!

      • interpCheckBoxB

        private javax.swing.JCheckBox interpCheckBoxB
        Deprecated.
        DOCUMENT ME!

      • labelsTable

        private java.util.Hashtable<java.lang.Integer,​javax.swing.JLabel> labelsTable
        Deprecated.
        Histogram dialog slider labels of the imageA, B and GM imageA, B.

      • labelsTableB

        private java.util.Hashtable<java.lang.Integer,​javax.swing.JLabel> labelsTableB
        Deprecated.
        Histogram dialog slider labels of the imageA, B and GM imageA, B.

      • logCheckBoxA

        private javax.swing.JCheckBox logCheckBoxA
        Deprecated.
        DOCUMENT ME!

      • logCheckBoxB

        private javax.swing.JCheckBox logCheckBoxB
        Deprecated.
        DOCUMENT ME!

      • mouseLabel

        private javax.swing.JLabel mouseLabel
        Deprecated.
        The opacity slider label.

      • mouseLabelB

        private javax.swing.JLabel mouseLabelB
        Deprecated.
        The opacity slider label.

      • mouseSlider

        private javax.swing.JSlider mouseSlider
        Deprecated.
        Opacity X scale sliders.

      • mouseSliderB

        private javax.swing.JSlider mouseSliderB
        Deprecated.
        Opacity X scale sliders.

      • mouseSliderLabels

        private javax.swing.JLabel[] mouseSliderLabels
        Deprecated.
        The labels below the opacity slider.

      • mouseSliderLabelsB

        private javax.swing.JLabel[] mouseSliderLabelsB
        Deprecated.
        The labels below the opacity slider.

      • nColorsATextF

        private javax.swing.JTextField nColorsATextF
        Deprecated.
        DOCUMENT ME!

      • nColorsBTextF

        private javax.swing.JTextField nColorsBTextF
        Deprecated.
        DOCUMENT ME!

      • oneBasedLUTCheckBoxImageB

        private javax.swing.JCheckBox oneBasedLUTCheckBoxImageB
        Deprecated.
        DOCUMENT ME!

      • outputBox

        private javax.swing.JComboBox outputBox
        Deprecated.
        DOCUMENT ME!

      • outputBoxB

        private javax.swing.JComboBox outputBoxB
        Deprecated.
        DOCUMENT ME!

      • panelA

        private javax.swing.JPanel panelA
        Deprecated.
        DOCUMENT ME!

      • panelB

        private javax.swing.JPanel panelB
        Deprecated.
        DOCUMENT ME!

      • rangeText

        private javax.swing.JTextField rangeText
        Deprecated.
        X range text field in the imageA, B histogram dialog.

      • rangeTextB

        private javax.swing.JTextField rangeTextB
        Deprecated.
        X range text field in the imageA, B histogram dialog.

      • rangeX

        private float rangeX
        Deprecated.
        X range value of the imageA, B and GM imageA, B.

      • rangeXB

        private float rangeXB
        Deprecated.
        X range value of the imageA, B and GM imageA, B.

      • scaleRangeA

        private int scaleRangeA
        Deprecated.
        Scale range value according to the image min and max.

      • scaleRangeB

        private int scaleRangeB
        Deprecated.
        Scale range value according to the image min and max.

      • tabbedPane

        private javax.swing.JTabbedPane tabbedPane
        Deprecated.
        DOCUMENT ME!

      • threshLowerBF

        private javax.swing.JTextField threshLowerBF
        Deprecated.
        DOCUMENT ME!

      • threshUpperBF

        private javax.swing.JTextField threshUpperBF
        Deprecated.
        DOCUMENT ME!

      • threshFillBF

        private javax.swing.JTextField threshFillBF
        Deprecated.
        DOCUMENT ME!

      • threshLowerF

        private javax.swing.JTextField threshLowerF
        Deprecated.
        threshold related.

      • threshUpperF

        private javax.swing.JTextField threshUpperF
        Deprecated.
        threshold related.

      • threshFillF

        private javax.swing.JTextField threshFillF
        Deprecated.
        threshold related.

      • toolBarBottom

        private javax.swing.JToolBar toolBarBottom
        Deprecated.
        DOCUMENT ME!

      • toolBarCenter

        private javax.swing.JToolBar toolBarCenter
        Deprecated.
        center toolbar

      • toolBarThreshold

        private javax.swing.JToolBar toolBarThreshold
        Deprecated.
        DOCUMENT ME!

      • toolBarTop

        private javax.swing.JToolBar toolBarTop
        Deprecated.
        DOCUMENT ME!

      • updateCheckBoxA

        private javax.swing.JCheckBox updateCheckBoxA
        Deprecated.
        DOCUMENT ME!

      • updateCheckBoxB

        private javax.swing.JCheckBox updateCheckBoxB
        Deprecated.
        DOCUMENT ME!

      • voxelVolumeLabel

        private javax.swing.JLabel voxelVolumeLabel
        Deprecated.
        Used to display the volume or area of the voxels/pixels between the upper and lower bounds.

      • xRangeTextA

        private javax.swing.JTextField xRangeTextA
        Deprecated.
        X range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

      • xRangeTextB

        private javax.swing.JTextField xRangeTextB
        Deprecated.
        X range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

      • yRangeTextA

        private javax.swing.JTextField yRangeTextA
        Deprecated.
        Y range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

      • yRangeTextB

        private javax.swing.JTextField yRangeTextB
        Deprecated.
        Y range text field in the imageA, B and GM image A, B histogram dialog. Following text fields are used by the tri-planar volume view.

      • customLUTsLocation

        public static final java.lang.String customLUTsLocation
        Deprecated.
        The location of custom LUT definitions, mostly used for volume rendering purposes. The original set were taken from the Osirix imaging application.
        See Also:
        ModelLUT, Constant Field Values

    • Constructor Detail

      • ViewJPanelLUT

        public ViewJPanelLUT​(ViewJFrameHistoLUT parent)
        Deprecated.
        Set up the LUT panel.
        Parameters:
        parent - DOCUMENT ME!

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Deprecated.
        Calls various methods depending on the action.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Parameters:
        event - event that triggered function

      • clearVoxelLabel

        public void clearVoxelLabel()
        Deprecated.
        DOCUMENT ME!

      • dispose

        public void dispose()
        Deprecated.
        Disposes of components and frame.

      • dragPoint

        public void dragPoint​(java.awt.event.MouseEvent mouseEvent)
        Deprecated.
        Placeholder.
        Specified by:
        dragPoint in interface HistoLUTParent
        Parameters:
        mouseEvent - drag event

      • getHistoLUTComponentA

        public final ViewJComponentHLUTBase getHistoLUTComponentA()
        Deprecated.
        Get the histogram component for imageA.
        Returns:
        the imageA histogram component

      • getHistoLUTComponentB

        public final ViewJComponentHLUTBase getHistoLUTComponentB()
        Deprecated.
        Get the histogram component for imageB.
        Returns:
        the imageB histogram component

      • getLowerThreshold

        public float getLowerThreshold()
        Deprecated.
        Returns the lower threshold value.
        Returns:
        float lower thresh

      • getLUTa

        public final ModelLUT getLUTa()
        Deprecated.
        Get the imageA histo component lut.
        Returns:
        ModelLUT

      • getLUTb

        public final ModelLUT getLUTb()
        Deprecated.
        Get the imageB histo component lut.
        Returns:
        ModelLUT

      • getLUTComponentA

        public final ViewJComponentLUT getLUTComponentA()
        Deprecated.
        Get the imageA LUT.
        Returns:
        the imageA LUT component

      • getLUTComponentB

        public final ViewJComponentLUT getLUTComponentB()
        Deprecated.
        Get the imageB LUT.
        Returns:
        the imageB LUT component

      • getLUTRecorder

        public JDialogRecordLUT getLUTRecorder()
        Deprecated.
        Get the LUT recorder reference.
        Returns:
        JDialogRecordLUT reference to LUT recorder.

      • getUpperThreshold

        public float getUpperThreshold()
        Deprecated.
        Returns the upper threshold value.
        Returns:
        float upper thresh

      • initGUI

        public void initGUI()
        Deprecated.
        Set up the panel components.

      • buildLUTSelectionList

        public static final javax.swing.JToolBar buildLUTSelectionList​(java.awt.event.ActionListener listener)
        Deprecated.
        Build the center part of the LUT toolbar.
        Parameters:
        listener - The listener to attach to the created LUT selection combo box.
        Returns:
        the top part of the LUT toolbar

      • getCustomLUTList

        private static final java.util.Vector<java.lang.String> getCustomLUTList()
        Deprecated.

      • isImageASelected

        public boolean isImageASelected()
        Deprecated.
        Returns whether the imageA LUT panel is the one being worked on.
        Returns:
        whether the imageA LUT panel is the one being worked on

      • isImageBSelected

        public boolean isImageBSelected()
        Deprecated.
        Returns whether the imageB LUT panel is the one being worked on.
        Returns:
        whether the imageB LUT panel is the one being worked on

      • isImageUpdate

        public boolean isImageUpdate()
        Deprecated.
        Indicates if real-time update of the image should take place.
        Specified by:
        isImageUpdate in interface HistoLUTParent
        Returns:
        true if real time update should take place

      • itemStateChanged

        public void itemStateChanged​(java.awt.event.ItemEvent event)
        Deprecated.
        Sets the flags for the checkboxes.
        Specified by:
        itemStateChanged in interface java.awt.event.ItemListener
        Parameters:
        event - event that triggered this function

      • keyPressed

        public void keyPressed​(java.awt.event.KeyEvent e)
        Deprecated.
        Unchanged.
        Specified by:
        keyPressed in interface java.awt.event.KeyListener
        Parameters:
        e - DOCUMENT ME!

      • keyReleased

        public void keyReleased​(java.awt.event.KeyEvent e)
        Deprecated.
        Unchanged.
        Specified by:
        keyReleased in interface java.awt.event.KeyListener
        Parameters:
        e - DOCUMENT ME!

      • keyTyped

        public void keyTyped​(java.awt.event.KeyEvent e)
        Deprecated.
        If the ENTER key is hit while in threshold boxes, update the LUT's threshold (for dual threshold).
        Specified by:
        keyTyped in interface java.awt.event.KeyListener
        Parameters:
        e - KeyEvent

      • removeHistoLUTb

        public void removeHistoLUTb()
        Deprecated.
        Removes the tabbed pane for the histogram of image B.

      • setAllOff

        public void setAllOff()
        Deprecated.
        Placeholder.
        Specified by:
        setAllOff in interface HistoLUTParent

      • setLUT

        public void setLUT​(ModelLUT newLUT)
        Deprecated.
        Replaces the LUT and builds a new LUT component.
        Specified by:
        setLUT in interface HistoLUTParent
        Parameters:
        newLUT - New LUT

      • setLUTa

        public final void setLUTa​(ModelLUT lut)
        Deprecated.
        Change the histogram component LUT.
        Parameters:
        lut - the new lut

      • setLUTb

        public final void setLUTb​(ModelLUT lut)
        Deprecated.
        Change the histogram component LUT.
        Parameters:
        lut - the new lut

      • setNColors

        public void setNColors​(int value)
        Deprecated.
        Change the text field showing the number of colors.
        Parameters:
        value - the number of colors

      • setRangeText

        public void setRangeText​(float x,
                         float y,
                         int _index)
        Deprecated.
        Set the range value of the text field.
        Specified by:
        setRangeText in interface HistoLUTParent
        Parameters:
        x - the x threshold range value
        y - the y threshold range value
        _index - the cursor index

      • stateChanged

        public void stateChanged​(javax.swing.event.ChangeEvent e)
        Deprecated.
        Sets values based on knob along slider.
        Specified by:
        stateChanged in interface javax.swing.event.ChangeListener
        Parameters:
        e - event that triggered this function

      • updateFrames

        public void updateFrames​(boolean flag)
        Deprecated.
        Update all of the image frames that display the image this histo lut is for.
        Specified by:
        updateFrames in interface HistoLUTParent
        Parameters:
        flag - this boolean indicates if the frame that displays the image should re-export the image and apply new LUT
        See Also:
        ModelImage.notifyImageDisplayListeners()

      • updateHistoLUT

        public void updateHistoLUT​(ModelImage _imageA,
                           ModelLUT _LUTa,
                           ModelImage _imageB,
                           ModelLUT _LUTb,
                           boolean progressFlag)
        Deprecated.
        This method is called to update the histogram(s) displayed in each tabbed pane of the frame.
        Parameters:
        _imageA - image A
        _LUTa - lookup table for image A
        _imageB - image B
        _LUTb - lookup table for image B
        progressFlag - passed to calculateHistogram algorithm. If false progress bar is not displayed

      • updateLUTPositionString

        public void updateLUTPositionString​(java.lang.String str)
        Deprecated.
        Placeholder.
        Specified by:
        updateLUTPositionString in interface HistoLUTParent
        Parameters:
        str - string

      • updateThresholdFields

        public void updateThresholdFields​(float lower,
                                  float upper)
        Deprecated.
        Method to update the threshold text fields when the lower or upper threshold changes.
        Specified by:
        updateThresholdFields in interface HistoLUTParent
        Parameters:
        lower - the lower threshold value
        upper - the upper threshold value

      • buildPanelA

        private void buildPanelA​(ModelImage image,
                         ModelLUT LUT,
                         boolean entireFlag)
        Deprecated.
        Method that displays the histogram and LUT and other controls to manipulate the LUT. Panel for image A.
        Parameters:
        image - Model of image
        LUT - Model of LUT
        entireFlag - Flag indicating if histogram should be made of entire image.

      • buildPanelB

        private void buildPanelB​(ModelImage image,
                         ModelLUT LUT,
                         boolean entireFlag)
        Deprecated.
        Method that displays the histogram and LUT and other controls to manipulate the LUT. Panel for image B.
        Parameters:
        image - Model of image
        LUT - Model of LUT
        entireFlag - Flag indicating if histogram should be made of entire image.

      • calcHistogram

        private void calcHistogram​(int imageAorB,
                           boolean entireFlag,
                           boolean progressFlag)
        Deprecated.
        Calculates histogram for the image(s).
        Parameters:
        imageAorB - flag to indicate if histogram is to be calculated for imageA or imageB.
        entireFlag - if true calculate histogram for the entire image. if false uses areas defined by VOI regions.
        progressFlag - passed to calculateHistogram algorithm. If false progress bar is not displayed

      • calcThreshold

        private void calcThreshold()
        Deprecated.
        Calculates the thresholded image based on the parameters of the threshold transfer function. Image A is thresholded if the selected panel is for imageA and likewise for image B.

      • calculateThreshold

        private void calculateThreshold()
        Deprecated.
        Calculates the volume (for 3D images) or area (for 2D images) of the image between the two values from the upper and lower bounds text areas.

      • calculateThreshold

        private void calculateThreshold​(float lower,
                                float upper)
        Deprecated.
        Calculates the volume or area of the image between the two values from the upper and lower bounds (inclusive).
        Parameters:
        lower - Lower bound of the threshold (inclusive).
        upper - Upper bound of the threshold (inclusive).

      • calculateThresholdArea

        private void calculateThresholdArea​(float lower,
                                    float upper)
        Deprecated.
        Calculates the area of the image between the two values from the upper and lower bounds (inclusive).
        Parameters:
        lower - Lower bound of the threshold (inclusive).
        upper - Upper bound of the threshold (inclusive).

      • calculateThresholdVolume

        private void calculateThresholdVolume​(float lower,
                                      float upper)
        Deprecated.
        Calculates the volume of the image between the two values from the upper and lower bounds (inclusive).
        Parameters:
        lower - Lower bound of the threshold (inclusive).
        upper - Upper bound of the threshold (inclusive).

      • isLUT1Based

        private boolean isLUT1Based​(ModelLUT LUT)
        Deprecated.
        end HistoLUTParent.
        Parameters:
        LUT - DOCUMENT ME!
        Returns:
        DOCUMENT ME!

      • openLUTFile

        public static final java.io.BufferedReader openLUTFile​(java.lang.String lutName)
                                                throws java.io.IOException
        Deprecated.
        Opens and returns a buffered reader for a given custom LUT name.
        Parameters:
        lutName - The name of the LUT file (without the extension).
        Returns:
        A LUT file buffered reader.
        Throws:
        java.io.IOException
        See Also:
        ModelLUT