Package gov.nih.mipav.model.algorithms.registration.vabra

Class VabraSolver

java.lang.Object

gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

public class VabraSolver
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
private int	currentLevelIdx
private int	currentResolutionIdx
private java.util.ArrayList<java.lang.Integer>	downSampleFactor
(package private) double[][]	gradients
(package private) float[]	gradMag
(package private) int[][]	grid
(package private) int	gridPoints
private java.util.ArrayList<java.lang.Integer>	gridSpacingX
private java.util.ArrayList<java.lang.Integer>	gridSpacingY
private java.util.ArrayList<java.lang.Integer>	gridSpacingZ
(package private) byte[][][]	gridVisited
(package private) VabraSubjectTargetPairs	imgSubTarPairs
(package private) int[]	index
(package private) float	interval_x
(package private) float	interval_y
(package private) float	interval_z
(package private) java.io.File	outputDir
private java.util.ArrayList<java.lang.Integer>	resolutionSwitchPoints
(package private) int[][]	reverseIdxGrid
(package private) boolean	saveIntermResults
(package private) int	xPts
(package private) int	yPts
(package private) int	zPts

Constructor Summary

Constructors

Constructor	Description
VabraSolver(VabraSubjectTargetPairs imgSubTarPairs, java.io.File configFile, java.io.File outputDir, boolean saveIntermResults)

Method Summary

Modifier and Type	Method	Description
(package private) boolean	beenVisited(int gridIdx)
void	dispose()
(package private) void	generateFinePoints(int[] point, int[][] newPoints)
(package private) void	generateGrid(int[] box)
(package private) void	generateGrid(int[] boundingBox, int xPoints, int yPoints, int zPoints)
ModelImage	getDeformationField()
ModelImage	getDeformedSubject()
(package private) void	identifyRegions()
(package private) void	markVisited(int gridIdx)
(package private) void	optimizeAtGridPoints()
(package private) void	readConfigFile(java.io.File f)
(package private) void	registerAtCurrentLevel(int[] boundingBox)
void	registerImages()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

downSampleFactor

private java.util.ArrayList<java.lang.Integer> downSampleFactor

resolutionSwitchPoints

private java.util.ArrayList<java.lang.Integer> resolutionSwitchPoints

currentLevelIdx

private int currentLevelIdx

currentResolutionIdx

private int currentResolutionIdx

gridSpacingX

private java.util.ArrayList<java.lang.Integer> gridSpacingX

gridSpacingY

private java.util.ArrayList<java.lang.Integer> gridSpacingY

gridSpacingZ

private java.util.ArrayList<java.lang.Integer> gridSpacingZ

interval_x

float interval_x

interval_y

float interval_y

interval_z

float interval_z

gridPoints

int gridPoints

grid

int[][] grid

xPts

int xPts

yPts

int yPts

zPts

int zPts

reverseIdxGrid

int[][] reverseIdxGrid

gridVisited

byte[][][] gridVisited

saveIntermResults

boolean saveIntermResults

imgSubTarPairs

VabraSubjectTargetPairs imgSubTarPairs

outputDir

java.io.File outputDir

gradients

double[][] gradients

gradMag

float[] gradMag

index

int[] index

Constructor Detail

VabraSolver

public VabraSolver(VabraSubjectTargetPairs imgSubTarPairs,
                   java.io.File configFile,
                   java.io.File outputDir,
                   boolean saveIntermResults)

Method Detail

dispose

public void dispose()

readConfigFile

void readConfigFile(java.io.File f)

registerImages

public void registerImages()

registerAtCurrentLevel

void registerAtCurrentLevel(int[] boundingBox)

identifyRegions

void identifyRegions()

optimizeAtGridPoints

void optimizeAtGridPoints()

generateGrid

void generateGrid(int[] boundingBox,
                  int xPoints,
                  int yPoints,
                  int zPoints)

generateGrid

void generateGrid(int[] box)

generateFinePoints

void generateFinePoints(int[] point,
                        int[][] newPoints)

beenVisited

boolean beenVisited(int gridIdx)

markVisited

void markVisited(int gridIdx)

getDeformedSubject

public ModelImage getDeformedSubject()

getDeformationField

public ModelImage getDeformationField()