Package gov.nih.mipav.view.dialogs

Class JDialogMarkovSmooth

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogMarkovSmooth
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogMarkovSmooth extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
Dialog to get user input, then call the algorithm. The user has the option to generate a new image or replace the source image. The program does slice by slice Markov smoothing with Iterated Conditional Modes on black and white images. Algorithms are executed in their own thread.
See Also:

  • Field Details

    • covariance

      private double covariance
      The known covariance of the Gaussian noise

    • max_diff

      private double max_diff
      The maximum contribution to the potential of the difference between two neighboring pixel values.

    • weight_diff

      private double weight_diff
      The weighting attached to the component of the potential due to the difference between two neighboring pixel values.

    • iterations

      private int iterations
      The number of iterations to perform

    • destinationGroup

      private ButtonGroup destinationGroup
      DOCUMENT ME!

    • destinationPanel

      private JPanel destinationPanel
      DOCUMENT ME!

    • displayLoc

      private int displayLoc
      DOCUMENT ME!

    • image

      private ModelImage image
      DOCUMENT ME!

    • labelMaxDiff

      private JLabel labelMaxDiff
      DOCUMENT ME!

    • labelWeightDiff

      private JLabel labelWeightDiff

    • labelIterations

      private JLabel labelIterations

    • labelCovariance

      private JLabel labelCovariance
      DOCUMENT ME!

    • newImage

      private JRadioButton newImage
      DOCUMENT ME!

    • msAlgo

      private AlgorithmMarkovSmooth msAlgo
      DOCUMENT ME!

    • optionsPanel

      private JPanel optionsPanel
      DOCUMENT ME!

    • replaceImage

      private JRadioButton replaceImage
      DOCUMENT ME!

    • resultImage

      private ModelImage resultImage
      DOCUMENT ME!

    • textMaxDiff

      private JTextField textMaxDiff

    • textWeightDiff

      private JTextField textWeightDiff

    • textIterations

      private JTextField textIterations

    • textCovariance

      private JTextField textCovariance
      DOCUMENT ME!

    • titles

      private String[] titles
      DOCUMENT ME!

    • userInterface

      private ViewUserInterface userInterface
      DOCUMENT ME!

  • Constructor Details

    • JDialogMarkovSmooth

      public JDialogMarkovSmooth()
      Empty constructor needed for dynamic instantiation (used during scripting).

    • JDialogMarkovSmooth

      public JDialogMarkovSmooth(Frame theParentFrame, ModelImage im)
      Creates a new JDialogMarkovSmooth object.
      Parameters:
      theParentFrame - Parent frame.
      im - Source image.

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Closes dialog box when the OK button is pressed, sets variables and calls algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - Event that triggers function.

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • getResultImage

      public ModelImage getResultImage()
      Accessor that returns the image.
      Returns:
      The result image.

    • setCovariance

      public void setCovariance(double covariance)
      Accessor that sets the Gaussian noise covariance.
      Parameters:
      covariance -

    • setDisplayLocNew

      public void setDisplayLocNew()
      Accessor that sets the display loc variable to new, so that a new image is created once the algorithm completes.

    • setDisplayLocReplace

      public void setDisplayLocReplace()
      Accessor that sets the display loc variable to replace, so the current image is replaced once the algorithm completes.

    • setMaxDiff

      public void setMaxDiff(double max_diff)
      Accessor that sets the maximum contribution to the potential of the difference between two neighboring pixel values.
      Parameters:
      max_diff -

    • setWeightDiff

      public void setWeightDiff(double weight_diff)
      Accessor that sets the weighting attached to the component of the potential due to the difference between two neighboring pixel values.
      Parameters:
      weight_diff -

    • setIterations

      public void setIterations(int iterations)
      Parameters:
      iterations -

    • callAlgorithm

      protected void callAlgorithm()
      Once all the necessary variables are set, call the Markov Smooth algorithm based on whether or not there is a separate destination image.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • doPostAlgorithmActions

      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      Overrides:
      doPostAlgorithmActions in class JDialogScriptableBase

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • init

      private void init()
      Initializes the GUI by creating the components, placing them in the dialog, and displaying them.

    • setDefaults

      private void setDefaults()
      Set the default values for the parameters.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.

    • getActionMetadata

      public ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      Specified by:
      getActionMetadata in interface ActionDiscovery
      Returns:
      Metadata for this action.

    • createInputParameters

      public ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      Specified by:
      createInputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the inputs of this algorithm.

    • createOutputParameters

      public ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      Specified by:
      createOutputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the outputs of this algorithm.

    • getOutputImageName

      public String getOutputImageName(String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      Specified by:
      getOutputImageName in interface ActionDiscovery
      Parameters:
      imageParamName - The output image parameter label for which to get the image name.
      Returns:
      The image name of the requested output image parameter label.

    • isActionComplete

      public boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      Specified by:
      isActionComplete in interface ActionDiscovery
      Returns:
      True, if the action is complete. False, if the action failed or is still running.