Package gov.nih.mipav.model.algorithms

Class AlgorithmCenterOfMassRGB

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmCenterOfMassRGB
extends AlgorithmBase

* This algorithm calculates the red, green, and blue center of mass for 2D and 3D color images.

Version:

1.0 February 26, 2008

Author:

William Gandler

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	entireImage	Flag, if true, indicates that the whole image should be processed.
private float[]	thresholdB	DOCUMENT ME!
private float[]	thresholdG	DOCUMENT ME!
private float[]	thresholdR	Three arrays (R,G,B) containing minimum and maximum threshold for each channel.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmCenterOfMassRGB(ModelImage srcImage, float[] thresholdR, float[] thresholdG, float[] thresholdB, boolean maskFlag)	Default constructor for running algorithm to calculate red, green, and blue centers of mass.

Method Summary

Modifier and Type	Method	Description
private void	calcInPlace2D()	Calculate red, green, and blue centers of mass for 2D color image.
private void	calcInPlace3D()	Calculates red, green, and blue centers of mass in 3D color image.
void	finalize()	Prepares this class for destruction.
float[]	getThresholdB()
float[]	getThresholdG()
float[]	getThresholdR()
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

entireImage

private boolean entireImage

Flag, if true, indicates that the whole image should be processed. If false on process the image over the mask areas.

thresholdB

private float[] thresholdB

DOCUMENT ME!

thresholdG

private float[] thresholdG

DOCUMENT ME!

thresholdR

private float[] thresholdR

Three arrays (R,G,B) containing minimum and maximum threshold for each channel.

Constructor Detail

AlgorithmCenterOfMassRGB

public AlgorithmCenterOfMassRGB(ModelImage srcImage,
                                float[] thresholdR,
                                float[] thresholdG,
                                float[] thresholdB,
                                boolean maskFlag)

Default constructor for running algorithm to calculate red, green, and blue centers of mass.

Parameters:

srcImage - ModelImage source

thresholdR - float[] red thresh

thresholdG - float[] green thresh

thresholdB - float[] blue thresh

maskFlag - boolean whole image or voi

Method Detail

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

calcInPlace2D

private void calcInPlace2D()

Calculate red, green, and blue centers of mass for 2D color image.

calcInPlace3D

private void calcInPlace3D()

Calculates red, green, and blue centers of mass in 3D color image.

getThresholdR

public float[] getThresholdR()

getThresholdG

public float[] getThresholdG()

getThresholdB

public float[] getThresholdB()