java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmCenterOfMassRGB

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmCenterOfMassRGB
extends AlgorithmBase
```
* This algorithm calculates the red, green, and blue center of mass for 2D and 3D color images.

Version:

1.0 February 26, 2008

Author:

William Gandler

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean`	`entireImage`	Flag, if true, indicates that the whole image should be processed.
`private float[]`	`thresholdB`	DOCUMENT ME!
`private float[]`	`thresholdG`	DOCUMENT ME!
`private float[]`	`thresholdR`	Three arrays (R,G,B) containing minimum and maximum threshold for each channel.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmCenterOfMassRGB(ModelImage srcImage, float[] thresholdR, float[] thresholdG, float[] thresholdB, boolean maskFlag)`	Default constructor for running algorithm to calculate red, green, and blue centers of mass.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`calcInPlace2D()`	Calculate red, green, and blue centers of mass for 2D color image.
`private void`	`calcInPlace3D()`	Calculates red, green, and blue centers of mass in 3D color image.
`void`	`finalize()`	Prepares this class for destruction.
`float[]`	`getThresholdB()`
`float[]`	`getThresholdG()`
`float[]`	`getThresholdR()`
`void`	`runAlgorithm()`	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - entireImage
```
private boolean entireImage
```
    Flag, if true, indicates that the whole image should be processed. If false on process the image over the mask areas.
  - thresholdB
```
private float[] thresholdB
```
    DOCUMENT ME!
  - thresholdG
```
private float[] thresholdG
```
    DOCUMENT ME!
  - thresholdR
```
private float[] thresholdR
```
    Three arrays (R,G,B) containing minimum and maximum threshold for each channel.
- Constructor Detail
  - AlgorithmCenterOfMassRGB
```
public AlgorithmCenterOfMassRGB(ModelImage srcImage,
                                float[] thresholdR,
                                float[] thresholdG,
                                float[] thresholdB,
                                boolean maskFlag)
```
    Default constructor for running algorithm to calculate red, green, and blue centers of mass.
    
    Parameters:
    
    srcImage - ModelImage source
    
    thresholdR - float[] red thresh
    
    thresholdG - float[] green thresh
    
    thresholdB - float[] blue thresh
    
    maskFlag - boolean whole image or voi
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - runAlgorithm
```
public void runAlgorithm()
```
    Starts the program.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase
  - calcInPlace2D
```
private void calcInPlace2D()
```
    Calculate red, green, and blue centers of mass for 2D color image.
  - calcInPlace3D
```
private void calcInPlace3D()
```
    Calculates red, green, and blue centers of mass in 3D color image.
  - getThresholdR
```
public float[] getThresholdR()
```
  - getThresholdG
```
public float[] getThresholdG()
```
  - getThresholdB
```
public float[] getThresholdB()
```

Class AlgorithmCenterOfMassRGB

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

entireImage

thresholdB

thresholdG

thresholdR

Constructor Detail

AlgorithmCenterOfMassRGB

Method Detail

finalize

runAlgorithm

calcInPlace2D

calcInPlace3D

getThresholdR

getThresholdG

getThresholdB