Package gov.nih.mipav.model.file

Class FileInfoXML

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoXML

All Implemented Interfaces:

Serializable, Cloneable

Direct Known Subclasses:

FileInfoImageXML, FileInfoSurfaceRefXML, FileInfoSurfaceXML

public abstract class FileInfoXML
extends FileInfoBase

Abstract base clase contains the information that contains the shared information for XML images and XML surfaces.

Derived classes: FileInfoImageXML.java and FileInforSurfaceXML.java

Version:

0.1 Sept 19, 2002

Author:

Alexandra Bokinsky, Ph.D., Neva Cherniavsky, Matthew J. McAuliffe, Ph.D.

See Also:

• FileIO
• FileInfoXML
• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
protected String	imageDataFileName	Name (not path) of the (usually raw) image data file.
protected String	imageDescription	Brief description of the image - optional XML tag.
private static final long	serialVersionUID	Use serialVersionUID for interoperability.

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, dtiParams, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoXML(String name, String directory, int format)	Main constructor for FileInfoXML.

Method Summary

Modifier and Type	Method	Description
void	appendImageDescription(String appendDescription)	Appends a string to the image description.
abstract void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
void	finalize()	Prepares the class for cleanup.
String	getImageDataFileName()	Returns the name of the image data file (not the xml header).
String	getImageDescription()	Returns description of the image.
void	setImageDataFileName(String dataFileName)	Sets the name of the image data file (not the xml header).
void	setImageDescription(String newDescription)	Sets the image description.
abstract void	updateFileInfos(FileInfoXML fInfo)	Used to propogate all fileInfoXML private variables to other fileinfos.

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getDTIParameters, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setDTIParameters, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

imageDataFileName

protected String imageDataFileName

Name (not path) of the (usually raw) image data file. The name of the image xml header file is stored in FileInfoBase.getFileName().

See Also:

• FileInfoBase.getFileName()
• FileInfoBase.setFileName(String)

imageDescription

protected String imageDescription

Brief description of the image - optional XML tag.

Constructor Details

FileInfoXML

public FileInfoXML(String name,
 String directory,
 int format)

Main constructor for FileInfoXML.

Parameters:

name - String file name

directory - String file directory

format - int file format (data type)

Method Details

displayAboutInfo

public abstract void displayAboutInfo(JDialogBase dlog,
 TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - JDialogBase dialog box that is written to

matrix - transformation matrix

updateFileInfos

public abstract void updateFileInfos(FileInfoXML fInfo)

Used to propogate all fileInfoXML private variables to other fileinfos.

Parameters:

fInfo - FileInfoXML file info to be copied into

appendImageDescription

public void appendImageDescription(String appendDescription)

Appends a string to the image description.

Parameters:

appendDescription - a brief description of the image to be appended.

finalize

public void finalize()

Prepares the class for cleanup.

Overrides:

finalize in class FileInfoBase

getImageDataFileName

public String getImageDataFileName()

Returns the name of the image data file (not the xml header).

Returns:

name of the image data file

getImageDescription

public String getImageDescription()

Returns description of the image.

Returns:

a brief description of the image.

setImageDataFileName

public void setImageDataFileName(String dataFileName)

Sets the name of the image data file (not the xml header).

Parameters:

dataFileName - image data file name (not path)

setImageDescription

public void setImageDescription(String newDescription)

Sets the image description.

Parameters:

newDescription - a brief description of the image.