Package gov.nih.mipav.view

Class ViewJFrameGraph

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

gov.nih.mipav.view.ViewJFrameGraph

All Implemented Interfaces:

ActionListener, ComponentListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

public class ViewJFrameGraph
extends JFrame
implements ComponentListener, ActionListener, ChangeListener, WindowListener

This is a frame which holds a graph in one panel and a set of user buttons in the other. It uses swing components for all of the graphics and calls ViewJComponentGraph for the graph.

Version:

1.0 Aug 1, 1999

Author:

Neva Cherniavsky (primary), Harman Singh aev* @see ViewJComponentGraph

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	ViewJFrameGraph.bColorListener	This class is called by the color chooser when the user selects a a color from the background color chooser dialog box.
(package private) class	ViewJFrameGraph.CancelListener	This class is called by the color chooser when the user cancels.
(package private) class	ViewJFrameGraph.ColorListener	This class is called by the color chooser when the user selects a a color from the function line color chooser dialog.
static enum	ViewJFrameGraph.FitMode

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	autoShrinkDomain
private JCheckBox	autoShrinkDomainCheckbox
private boolean	autoShrinkRange	DOCUMENT ME!
private JCheckBox	autoShrinkRangeCheckbox	DOCUMENT ME!
private JPanel	axisPanel	DOCUMENT ME!
private JButton	backgroundButton	DOCUMENT ME!
private JLabel	backgroundLabel	DOCUMENT ME!
private JPanel	backgroundPanel	DOCUMENT ME!
private JTextField	binsField
private ViewJColorChooser	colorChooser	DOCUMENT ME!
private JDialog	colorDialog	DOCUMENT ME!
private JMenu	copyMenu	DOCUMENT ME!
private String	defaultDirectory	DOCUMENT ME!
private JMenu	deleteMenu	DOCUMENT ME!
private boolean	doLogX
private boolean	doLogY
private JPanel	domainPanel
private JMenu	editMenu	DOCUMENT ME!
private boolean	entireImage
private JMenu	fileMenu	DOCUMENT ME!
private JPanel	fitFunctPanel	DOCUMENT ME!
private JPanel	fitFunctTypePanel	DOCUMENT ME!
private JCheckBox[]	fitFunctVisibleCheckbox	DOCUMENT ME!
private JPanel	fitFunctVisiblePanel	DOCUMENT ME!
private ViewJFrameGraph.FitMode	fitMode	Current mode for fitting functions
private JComboBox	fitType	Combo box for selecting the fitting function type
private VOI	frameGraphVOI	DOCUMENT ME!
private int	functionIndex	DOCUMENT ME!
private JLabel[]	functionLabel	DOCUMENT ME!
private JPanel	functionPropPanel	DOCUMENT ME!
private JButton[]	functLineColorButton	DOCUMENT ME!
private JCheckBox[]	functVisibleCheckbox	the slope changes.
private ViewJComponentGraph	graph	DOCUMENT ME!
private JCheckBox	gridlinesCheckbox	DOCUMENT ME!
private JPanel	gridPanel	DOCUMENT ME!
private JPanel	histogramPanel
private ModelImage	image
private double	imageMax
private double	imageMin
private int	initialSummaryBins
private double	initialUserMax
private double	initialUserMin
private JMenuItem	itemClose	DOCUMENT ME!
private JMenuItem	itemModifyGraph	DOCUMENT ME!
private JMenuItem	itemNormalize	DOCUMENT ME!
private JMenuItem	itemOpenNewGraph
private JMenuItem	itemOpenSameGraph	DOCUMENT ME!
private JMenuItem	itemPasteFunct	DOCUMENT ME!
private JMenuItem	itemPrintGraph	DOCUMENT ME!
private JMenuItem	itemResetDomain
private JMenuItem	itemResetGraph	DOCUMENT ME!
private JMenuItem	itemResetRange	DOCUMENT ME!
private JMenuItem	itemSaveGraph	DOCUMENT ME!
private JMenuItem	itemTableOutput
private String	lastUnits	DOCUMENT ME!
private JCheckBox	legendCheckbox	DOCUMENT ME!
private JPanel	legendPanel	DOCUMENT ME!
private JRadioButton	linesOnlyButton	DOCUMENT ME!
private JCheckBox	logScaleCheckboxX
private JCheckBox	logScaleCheckboxY
private JPanel	mainPanel	DOCUMENT ME!
private int	maxBins
private JTextField	maxDomainField
private JLabel	maxDomainLabel
private JTextField	maxField
private JTextField	maxRangeField	DOCUMENT ME!
private JLabel	maxRangeLabel	DOCUMENT ME!
private JTextField	minDomainField
private JLabel	minDomainLabel
private JTextField	minField
private static final int	MINIMUM_HEIGHT	Minimum height of the graph panel
private static final int	MINIMUM_WIDTH	Minimum width of the graph panel
private JCheckBox	minorTickMarksCheckbox	DOCUMENT ME!
private JTextField	minRangeField	DOCUMENT ME!
private JLabel	minRangeLabel	DOCUMENT ME!
private JDialog	modifyDialog	DOCUMENT ME!
private JPanel	modifyGraphPanel	DOCUMENT ME!
private JTextField[]	nameField	DOCUMENT ME!
private int	numVariables
private JTextField	numVariablesField
private JLabel	numVariablesLabel
private JMenuBar	openingMenuBar	DOCUMENT ME!
private static final int	PANEL_OFFSET	Minimum distance between frame and subpanels
private JRadioButton	pointsAndLinesButton
private ButtonGroup	pointsAndLinesGroup
private JRadioButton	pointsOnlyButton
private JPanel	pointsVisiblePanel	DOCUMENT ME!
private JPanel	rangePanel	DOCUMENT ME!
private JButton	resetDomainButton
private JButton	resetRangeButton	DOCUMENT ME!
private int	RGBOffset
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private JPanel	showPanel	DOCUMENT ME!
private int	summaryBins
private JTabbedPane	tabbedPane	DOCUMENT ME!
private JTextField	titleField	DOCUMENT ME!
private JLabel	titleLabel	DOCUMENT ME!
private String	units	DOCUMENT ME!
private int	updateRGBIndex	DOCUMENT ME!
private double	userMax
private double	userMin
private Vector<JMenuItem>	vectorCopyFunct	DOCUMENT ME!
private Vector<JMenuItem>	vectorDeleteFunct	DOCUMENT ME!
private JMenu	viewMenu	DOCUMENT ME!
private VOI	voi	DOCUMENT ME!
private JLabel	xAxisLabel	DOCUMENT ME!
private JTextField	xAxisLabelField	DOCUMENT ME!
private ButtonGroup	xGridButtonGroup
private JCheckBox[]	xGridCheckBoxList
private JPanel	xGridCheckBoxPanel
private JRadioButton	xGridEvenSpacedButton
private JTextField	xGridLineField	DOCUMENT ME!
private JLabel	xGridLineLabel	DOCUMENT ME!
private JScrollPane	xGridScrollPane
private JRadioButton	xGridUserSpacedButton
private int[][]	xyCoords	this is a list of the x,y coords of the voi's boundary
private JLabel	yAxisLabel	DOCUMENT ME!
private JTextField	yAxisLabelField	DOCUMENT ME!
private ButtonGroup	yGridButtonGroup
private JCheckBox[]	yGridCheckBoxList
private JPanel	yGridCheckBoxPanel
private JRadioButton	yGridEvenSpacedButton
private JTextField	yGridLineField	DOCUMENT ME!
private JLabel	yGridLineLabel	DOCUMENT ME!
private JScrollPane	yGridScrollPane
private JRadioButton	yGridUserSpacedButton

Fields inherited from class javax.swing.JFrame

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
ViewJFrameGraph(float[][] xInit, float[][] yInit, String title)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[][] x, float[][] y, String title, VOI v)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[][] xInit, float[][] yInit, String title, VOI v, String units)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[][] xInit, float[][] yInit, String title, String labelX, String labelY)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[][] xInit, float[][] yInit, String title, String labelX, String labelY, Color[] colorArray)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[] xInit, float[] yInit, String title, int[][] xyCoords)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[] x, float[] y, String title, VOI v)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[] xInit, float[] yInit, String title, VOI v, String units, int[][] xyCoords)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[] xInit, float[] yInit, String title, String labelX, String labelY)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[] xInit, float[] yInit, String title, String labelX, String labelY, boolean visible)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(float[] xInit, float[] yInit, String title, String labelX, String labelY, Color color)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(ModelImage image, int RGBOffset, boolean entireImage, int initialSummaryBins, double initialUserMin, double initialUserMax, float[] xInit, float[] yInit, String title, String labelX, String labelY)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.
ViewJFrameGraph(String title, boolean openFileGUI)	Constructor Constructs the frame, with the graph component in one panel and the user options in the other.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Takes the action commands and paints if the apply button is pressed, closes if the close button is pressed.
private void	buildFitFunctPanel()	Creates a panel to edit various fitted function features.
private void	buildFunctionPanel()	Creates a panel where various features of the functions can be edited, such as showing the legend, and changing function names.
private void	buildMenu()	Function that builds the menu of various tools to be used in conjunction with the graph. ie: opening / saving files, changing gridlines, title / axis labels, etc.
private void	buildModifyGraphPanel()	Creats a panel where various featuers of the graph can be edited, such as visbility of gridlines and minor tick marks, number of gridlines, background color, range, and labels for the title, x and y axiis.
void	componentHidden(ComponentEvent event)	DOCUMENT ME!
void	componentMoved(ComponentEvent event)	DOCUMENT ME!
void	componentResized(ComponentEvent event)	Resets the bounds of component graph if the window is resized.
void	componentShown(ComponentEvent event)	DOCUMENT ME!
private void	createModifyDialog()	Creates a dialog box in which the user can modify various features of the graph.
void	deleteFunct(int index)	Deletes the indicated function from the graph.
private void	fitFunctions(ViewJFrameGraph.FitMode mode)
void	focusGained(FocusEvent event)	Unchanged.
void	focusLost(FocusEvent event)	Unchanged.
String	getDefaultDirectory()	Accessor that gets the default directory.
Graphics	getFrameGraphics()
ViewJComponentGraph	getGraph()
private float	getMedian(float[] toSort)	DOCUMENT ME!
void	itemStateChanged(ItemEvent event)	Unchanged.
void	makeRangeSymmetric()	DOCUMENT ME!
boolean	openNew()	Opens Excel data (tab-delimited fields) into a new graph.
boolean	openSame()	Opens Excel data (tab-delimited fields) into this graph.
private float[]	parseString(String s, int len)	DOCUMENT ME!
private void	print()	Prints the current graph being displayed to the printer.
void	removeComponentListener()
void	replaceFunction(float[] newX, float[] newY)	Replaces the function used with a line image.
void	replaceFunction(float[] newX, float[] newY, int[][] newXYCoords, VOI myVoi, int index)	Replaces the function used with a line image.
void	save()	Saves this graph as Excel data so that Excel can read in the data and graph it as an Excel file.
void	save(String fileName)	Saves this graph as Excel data so that Excel can read in the data and graph it as an Excel file.
void	saveNewFunction(float[][] newX, float[][] newY, int ptIndex)	Replaces the first three functions (used with RGB images).
void	saveNewFunction(float[] newX, float[] newY, int index)	Saves the current function and adds a blank new function.
void	setDefaultDirectory(String dir)	Accessor that sets the default directory.
void	setLabels(String labelX, String labelY)	Sets the axis labels.
void	setLabelY(String labelY)
void	setResetEnabled(boolean enabled)	Accessor that enables or disables the reset item.
void	setUnitsInLabel(String units)	Sets the units in the default axis labels.
void	setVisible(boolean status)	Makes the dialog visible in center of screen.
void	setVisibleNoLocChange(boolean status)	Makes the dialog visible without setting position.
void	setVOI(VOI v)	Accessor that sets the VOI ViewJFrameGraph was made from.
void	showXYZLegends()	DOCUMENT ME!
void	stateChanged(ChangeEvent e)	ChangeListener************************************************************************* /** Sets values based on knob along slider
private void	tableOutput()
private boolean	testMaxParameter(String str, float maxValue)	Tests that the entered parameter is above maxValue.
private boolean	testMinParameter(String str, float minValue)	Tests that the entered parameter is below minValue.
private boolean	testParameter(String str, int minValue, int maxValue)	Tests that the entered parameter is in range.
void	update(float[][] x, float[][] y, int ptIndex)	Updates the graph by changing the plot to the desired new 3 functions (RGB).
void	update(float[] x, float[] y, int j)	Updates the graph by changing the plot to the desired new function / intensity plot.
void	update(Graphics g)	Calls paint instead of erasing.
void	updateFittedFunctions()	Deprecated. If data were changed, this could be useful to refit data without pressing a new button, but this function is not currently utilized.
private void	updateModifyDialog()	Updates fields of the Modify Graph Dialog which may have changed due to things such as adding/deleting functions.
void	windowActivated(WindowEvent event)	Unchanged.
void	windowClosed(WindowEvent event)	Unchanged.
void	windowClosing(WindowEvent event)	Disposes of error dialog, then frame.
void	windowDeactivated(WindowEvent event)	Unchanged.
void	windowDeiconified(WindowEvent event)	Unchanged.
void	windowIconified(WindowEvent event)	Unchanged.
void	windowOpened(WindowEvent event)	Unchanged.

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

MINIMUM_WIDTH

private static final int MINIMUM_WIDTH

Minimum width of the graph panel

See Also:

• Constant Field Values

MINIMUM_HEIGHT

private static final int MINIMUM_HEIGHT

Minimum height of the graph panel

See Also:

• Constant Field Values

PANEL_OFFSET

private static final int PANEL_OFFSET

Minimum distance between frame and subpanels

See Also:

• Constant Field Values

autoShrinkDomain

private boolean autoShrinkDomain

autoShrinkDomainCheckbox

private JCheckBox autoShrinkDomainCheckbox

autoShrinkRange

private boolean autoShrinkRange

DOCUMENT ME!

autoShrinkRangeCheckbox

private JCheckBox autoShrinkRangeCheckbox

DOCUMENT ME!

axisPanel

private JPanel axisPanel

DOCUMENT ME!

backgroundButton

private JButton backgroundButton

DOCUMENT ME!

backgroundLabel

private JLabel backgroundLabel

DOCUMENT ME!

backgroundPanel

private JPanel backgroundPanel

DOCUMENT ME!

colorChooser

private ViewJColorChooser colorChooser

DOCUMENT ME!

colorDialog

private JDialog colorDialog

DOCUMENT ME!

copyMenu

private JMenu copyMenu

DOCUMENT ME!

defaultDirectory

private String defaultDirectory

DOCUMENT ME!

deleteMenu

private JMenu deleteMenu

DOCUMENT ME!

editMenu

private JMenu editMenu

DOCUMENT ME!

fileMenu

private JMenu fileMenu

DOCUMENT ME!

fitFunctPanel

private JPanel fitFunctPanel

DOCUMENT ME!

fitFunctTypePanel

private JPanel fitFunctTypePanel

DOCUMENT ME!

fitFunctVisibleCheckbox

private JCheckBox[] fitFunctVisibleCheckbox

DOCUMENT ME!

fitFunctVisiblePanel

private JPanel fitFunctVisiblePanel

DOCUMENT ME!

fitMode

private ViewJFrameGraph.FitMode fitMode

Current mode for fitting functions

frameGraphVOI

private VOI frameGraphVOI

DOCUMENT ME!

functionIndex

private int functionIndex

DOCUMENT ME!

functLineColorButton

private JButton[] functLineColorButton

DOCUMENT ME!

functVisibleCheckbox

private JCheckBox[] functVisibleCheckbox

the slope changes.

graph

private ViewJComponentGraph graph

DOCUMENT ME!

gridlinesCheckbox

private JCheckBox gridlinesCheckbox

DOCUMENT ME!

gridPanel

private JPanel gridPanel

DOCUMENT ME!

itemClose

private JMenuItem itemClose

DOCUMENT ME!

itemModifyGraph

private JMenuItem itemModifyGraph

DOCUMENT ME!

itemNormalize

private JMenuItem itemNormalize

DOCUMENT ME!

itemOpenNewGraph

private JMenuItem itemOpenNewGraph

itemOpenSameGraph

private JMenuItem itemOpenSameGraph

DOCUMENT ME!

itemPasteFunct

private JMenuItem itemPasteFunct

DOCUMENT ME!

itemPrintGraph

private JMenuItem itemPrintGraph

DOCUMENT ME!

itemResetGraph

private JMenuItem itemResetGraph

DOCUMENT ME!

itemResetDomain

private JMenuItem itemResetDomain

itemResetRange

private JMenuItem itemResetRange

DOCUMENT ME!

itemSaveGraph

private JMenuItem itemSaveGraph

DOCUMENT ME!

itemTableOutput

private JMenuItem itemTableOutput

lastUnits

private String lastUnits

DOCUMENT ME!

legendCheckbox

private JCheckBox legendCheckbox

DOCUMENT ME!

nameField

private JTextField[] nameField

DOCUMENT ME!

functionLabel

private JLabel[] functionLabel

DOCUMENT ME!

legendPanel

private JPanel legendPanel

DOCUMENT ME!

mainPanel

private JPanel mainPanel

DOCUMENT ME!

maxDomainField

private JTextField maxDomainField

maxDomainLabel

private JLabel maxDomainLabel

minDomainField

private JTextField minDomainField

minDomainLabel

private JLabel minDomainLabel

maxRangeField

private JTextField maxRangeField

DOCUMENT ME!

maxRangeLabel

private JLabel maxRangeLabel

DOCUMENT ME!

minorTickMarksCheckbox

private JCheckBox minorTickMarksCheckbox

DOCUMENT ME!

minRangeField

private JTextField minRangeField

DOCUMENT ME!

minRangeLabel

private JLabel minRangeLabel

DOCUMENT ME!

modifyDialog

private JDialog modifyDialog

DOCUMENT ME!

modifyGraphPanel

private JPanel modifyGraphPanel

DOCUMENT ME!

functionPropPanel

private JPanel functionPropPanel

DOCUMENT ME!

openingMenuBar

private JMenuBar openingMenuBar

DOCUMENT ME!

linesOnlyButton

private JRadioButton linesOnlyButton

DOCUMENT ME!

pointsAndLinesButton

private JRadioButton pointsAndLinesButton

pointsOnlyButton

private JRadioButton pointsOnlyButton

pointsAndLinesGroup

private ButtonGroup pointsAndLinesGroup

pointsVisiblePanel

private JPanel pointsVisiblePanel

DOCUMENT ME!

fitType

private JComboBox fitType

Combo box for selecting the fitting function type

domainPanel

private JPanel domainPanel

resetDomainButton

private JButton resetDomainButton

logScaleCheckboxX

private JCheckBox logScaleCheckboxX

doLogX

private boolean doLogX

rangePanel

private JPanel rangePanel

DOCUMENT ME!

resetRangeButton

private JButton resetRangeButton

DOCUMENT ME!

logScaleCheckboxY

private JCheckBox logScaleCheckboxY

doLogY

private boolean doLogY

showPanel

private JPanel showPanel

DOCUMENT ME!

tabbedPane

private JTabbedPane tabbedPane

DOCUMENT ME!

titleField

private JTextField titleField

DOCUMENT ME!

titleLabel

private JLabel titleLabel

DOCUMENT ME!

units

private String units

DOCUMENT ME!

updateRGBIndex

private int updateRGBIndex

DOCUMENT ME!

vectorCopyFunct

private Vector<JMenuItem> vectorCopyFunct

DOCUMENT ME!

vectorDeleteFunct

private Vector<JMenuItem> vectorDeleteFunct

DOCUMENT ME!

viewMenu

private JMenu viewMenu

DOCUMENT ME!

voi

private VOI voi

DOCUMENT ME!

xAxisLabel

private JLabel xAxisLabel

DOCUMENT ME!

xAxisLabelField

private JTextField xAxisLabelField

DOCUMENT ME!

xGridEvenSpacedButton

private JRadioButton xGridEvenSpacedButton

xGridUserSpacedButton

private JRadioButton xGridUserSpacedButton

xGridButtonGroup

private ButtonGroup xGridButtonGroup

xGridCheckBoxPanel

private JPanel xGridCheckBoxPanel

xGridCheckBoxList

private JCheckBox[] xGridCheckBoxList

xGridScrollPane

private JScrollPane xGridScrollPane

xGridLineField

private JTextField xGridLineField

DOCUMENT ME!

xGridLineLabel

private JLabel xGridLineLabel

DOCUMENT ME!

yAxisLabel

private JLabel yAxisLabel

DOCUMENT ME!

yAxisLabelField

private JTextField yAxisLabelField

DOCUMENT ME!

yGridEvenSpacedButton

private JRadioButton yGridEvenSpacedButton

yGridUserSpacedButton

private JRadioButton yGridUserSpacedButton

yGridButtonGroup

private ButtonGroup yGridButtonGroup

yGridCheckBoxPanel

private JPanel yGridCheckBoxPanel

yGridCheckBoxList

private JCheckBox[] yGridCheckBoxList

yGridScrollPane

private JScrollPane yGridScrollPane

yGridLineField

private JTextField yGridLineField

DOCUMENT ME!

yGridLineLabel

private JLabel yGridLineLabel

DOCUMENT ME!

xyCoords

private int[][] xyCoords

this is a list of the x,y coords of the voi's boundary

numVariablesLabel

private JLabel numVariablesLabel

numVariablesField

private JTextField numVariablesField

numVariables

private int numVariables

image

private ModelImage image

RGBOffset

private int RGBOffset

entireImage

private boolean entireImage

initialSummaryBins

private int initialSummaryBins

summaryBins

private int summaryBins

initialUserMin

private double initialUserMin

userMin

private double userMin

initialUserMax

private double initialUserMax

userMax

private double userMax

minField

private JTextField minField

maxField

private JTextField maxField

binsField

private JTextField binsField

imageMin

private double imageMin

imageMax

private double imageMax

maxBins

private int maxBins

histogramPanel

private JPanel histogramPanel

Constructor Details

ViewJFrameGraph

public ViewJFrameGraph(String title,
 boolean openFileGUI)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. No function is loaded by default, but the user can open a new function to be displayed

Parameters:

title - DOCUMENT ME!

openFileGUI - DOCUMENT ME!

ViewJFrameGraph

public ViewJFrameGraph(float[] xInit,
 float[] yInit,
 String title,
 int[][] xyCoords)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

ViewJFrameGraph

public ViewJFrameGraph(float[][] xInit,
 float[][] yInit,
 String title)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

ViewJFrameGraph

public ViewJFrameGraph(float[] x,
 float[] y,
 String title,
 VOI v)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Graph is assumed to be made from a VOIPoint. Draws initial default graph of desired function / intensity plot.

Parameters:

x - the array of x coordinates to be plotted in the graph

y - the array of y coordinates to be plotted in the graph

title - the title of the frame

v - the VOI the graph is being made for

ViewJFrameGraph

public ViewJFrameGraph(float[][] x,
 float[][] y,
 String title,
 VOI v)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Graph is assumed to be made from a VOIPoint. Draws initial default graph of desired function / intensity plot.

Parameters:

x - the array of x coordinates to be plotted in the graph

y - the array of y coordinates to be plotted in the graph

title - the title of the frame

v - the VOI the graph is being made for

ViewJFrameGraph

public ViewJFrameGraph(ModelImage image,
 int RGBOffset,
 boolean entireImage,
 int initialSummaryBins,
 double initialUserMin,
 double initialUserMax,
 float[] xInit,
 float[] yInit,
 String title,
 String labelX,
 String labelY)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

labelX - x axis label

labelY - y aixs label

ViewJFrameGraph

public ViewJFrameGraph(float[] xInit,
 float[] yInit,
 String title,
 String labelX,
 String labelY)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

labelX - x axis label

labelY - y aixs label

ViewJFrameGraph

public ViewJFrameGraph(float[] xInit,
 float[] yInit,
 String title,
 String labelX,
 String labelY,
 boolean visible)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

labelX - x axis label

labelY - y aixs label

ViewJFrameGraph

public ViewJFrameGraph(float[][] xInit,
 float[][] yInit,
 String title,
 String labelX,
 String labelY)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

labelX - x axis label

labelY - y axis label

ViewJFrameGraph

public ViewJFrameGraph(float[] xInit,
 float[] yInit,
 String title,
 VOI v,
 String units,
 int[][] xyCoords)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Graph is assumed to be made from a VOIPoint. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

v - the VOI the graph is being made for

units - the string representing the units of the curve (x-axis)

xyCoords - actual x,y coords of the boundary go in here if not null

ViewJFrameGraph

public ViewJFrameGraph(float[][] xInit,
 float[][] yInit,
 String title,
 VOI v,
 String units)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Graph is assumed to be made from a VOIPoint. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

v - the VOI the graph is being made for

units - the string representing the units of the curve (x-axis)

ViewJFrameGraph

public ViewJFrameGraph(float[] xInit,
 float[] yInit,
 String title,
 String labelX,
 String labelY,
 Color color)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

labelX - x axis label

labelY - y aixs label

color - DOCUMENT ME!

ViewJFrameGraph

public ViewJFrameGraph(float[][] xInit,
 float[][] yInit,
 String title,
 String labelX,
 String labelY,
 Color[] colorArray)

Constructor Constructs the frame, with the graph component in one panel and the user options in the other. Draws initial default graph of desired function / intensity plot.

Parameters:

xInit - the array of x coordinates to be plotted in the graph

yInit - the array of y coordinates to be plotted in the graph

title - the title of the frame

labelX - x axis label

labelY - y axis label

colorArray - DOCUMENT ME!

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Takes the action commands and paints if the apply button is pressed, closes if the close button is pressed.

Specified by:

actionPerformed in interface ActionListener

Parameters:

event - event that triggers this function

fitFunctions

private void fitFunctions(ViewJFrameGraph.FitMode mode)

componentHidden

public void componentHidden(ComponentEvent event)

DOCUMENT ME!

Specified by:

componentHidden in interface ComponentListener

Parameters:

event - DOCUMENT ME!

componentMoved

public void componentMoved(ComponentEvent event)

DOCUMENT ME!

Specified by:

componentMoved in interface ComponentListener

Parameters:

event - DOCUMENT ME!

componentResized

public void componentResized(ComponentEvent event)

Resets the bounds of component graph if the window is resized.

Specified by:

componentResized in interface ComponentListener

Parameters:

event - event that triggered this function

componentShown

public void componentShown(ComponentEvent event)

DOCUMENT ME!

Specified by:

componentShown in interface ComponentListener

Parameters:

event - DOCUMENT ME!

deleteFunct

public void deleteFunct(int index)

Deletes the indicated function from the graph.

Parameters:

index - the index of the function to be deleted

focusGained

public void focusGained(FocusEvent event)

Unchanged.

Parameters:

event - DOCUMENT ME!

focusLost

public void focusLost(FocusEvent event)

Unchanged.

Parameters:

event - DOCUMENT ME!

getDefaultDirectory

public String getDefaultDirectory()

Accessor that gets the default directory.

Returns:

the default directory

itemStateChanged

public void itemStateChanged(ItemEvent event)

Unchanged.

Parameters:

event - DOCUMENT ME!

makeRangeSymmetric

public void makeRangeSymmetric()

DOCUMENT ME!

openNew

public boolean openNew()
                throws IOException

Opens Excel data (tab-delimited fields) into a new graph. The graphs could also have been saved using MIPAV

Returns:

DOCUMENT ME!

Throws:

IOException - DOCUMENT ME!

openSame

public boolean openSame()
                 throws IOException

Opens Excel data (tab-delimited fields) into this graph. The graphs could also have been saved using MIPAV

Returns:

DOCUMENT ME!

Throws:

IOException - DOCUMENT ME!

replaceFunction

public void replaceFunction(float[] newX,
 float[] newY)

Replaces the function used with a line image.

Parameters:

newX - a 1-d array of which contains the x-coordinates for the function

newY - a 1-d array of which contains the y-coordinates for the function

replaceFunction

public void replaceFunction(float[] newX,
 float[] newY,
 int[][] newXYCoords,
 VOI myVoi,
 int index)

Replaces the function used with a line image.

Parameters:

newX - a 1-d array of which contains the x-coordinates for the function

newY - a 1-d array of which contains the y-coordinates for the function

myVoi - the new VOI for this function

index - DOCUMENT ME!

saveNewFunction

public void saveNewFunction(float[] newX,
 float[] newY,
 int index)

Saves the current function and adds a blank new function.

Parameters:

newX - array of which contains the x-coordinates for the new function

newY - an array of which contains the y-coordinates for the new functions

index - the index of the point to be updated

saveNewFunction

public void saveNewFunction(float[][] newX,
 float[][] newY,
 int ptIndex)

Replaces the first three functions (used with RGB images).

Parameters:

newX - a 2-d array of which contains the x-coordinates for the three functions (RGB)

newY - a 2-d array of which contains the y-coordinates for the three functions (RGB)

ptIndex - the index of the point to be updated

setDefaultDirectory

public void setDefaultDirectory(String dir)

Accessor that sets the default directory.

Parameters:

dir - string to set the default directory to

setLabels

public void setLabels(String labelX,
 String labelY)

Sets the axis labels.

Parameters:

labelX - DOCUMENT ME!

labelY - DOCUMENT ME!

setLabelY

public void setLabelY(String labelY)

setResetEnabled

public void setResetEnabled(boolean enabled)

Accessor that enables or disables the reset item.

Parameters:

enabled - boolean that enables if true, disables if false

setUnitsInLabel

public void setUnitsInLabel(String units)

Sets the units in the default axis labels.

Parameters:

units - the String representing the units to be displayed

setVisible

public void setVisible(boolean status)

Makes the dialog visible in center of screen.

Overrides:

setVisible in class Window

Parameters:

status - - flag to indicating if the dialog should be visible

setVisibleNoLocChange

public void setVisibleNoLocChange(boolean status)

Makes the dialog visible without setting position.

Parameters:

status - - flag to indicating if the dialog should be visible

setVOI

public void setVOI(VOI v)

Accessor that sets the VOI ViewJFrameGraph was made from.

Parameters:

v - DOCUMENT ME!

showXYZLegends

public void showXYZLegends()

DOCUMENT ME!

stateChanged

public void stateChanged(ChangeEvent e)

ChangeListener************************************************************************* /** Sets values based on knob along slider

Specified by:

stateChanged in interface ChangeListener

Parameters:

e - event that triggered this function

update

public void update(Graphics g)

Calls paint instead of erasing.

Overrides:

update in class JFrame

Parameters:

g - graphics to paint in

update

public void update(float[] x,
 float[] y,
 int j)

Updates the graph by changing the plot to the desired new function / intensity plot.

Parameters:

x - the array of x coordinates to be plotted in the graph

y - the array of y coordinates to be plotted in the graph

j - The function index of which point to be updated

update

public void update(float[][] x,
 float[][] y,
 int ptIndex)

Updates the graph by changing the plot to the desired new 3 functions (RGB).

Parameters:

x - the 2-d array of x coordinates to be plotted in the graph for each function

y - the 2-d array of y coordinates to be plotted in the graph for each function

ptIndex - the index of the point to be updated (will not do anything if trying to update of an index different than updateRGBIndex)

updateFittedFunctions

public void updateFittedFunctions()

Deprecated.

If data were changed, this could be useful to refit data without pressing a new button, but this function is not currently utilized. Will be removed in future version of MIPAV unless a use can be found Updates Fitted Functions to accurately estimate the functions in the graph (Function data may have chaned due to realtime updating, and therefore the fitted functions must be updated).

windowActivated

public void windowActivated(WindowEvent event)

Unchanged.

Specified by:

windowActivated in interface WindowListener

Parameters:

event - DOCUMENT ME!

windowClosed

public void windowClosed(WindowEvent event)

Unchanged.

Specified by:

windowClosed in interface WindowListener

Parameters:

event - DOCUMENT ME!

windowClosing

public void windowClosing(WindowEvent event)

Disposes of error dialog, then frame. Nullifies pointer to this in VOIPoint, if this graph was made from a VOIPoint.

Specified by:

windowClosing in interface WindowListener

Parameters:

event - DOCUMENT ME!

windowDeactivated

public void windowDeactivated(WindowEvent event)

Unchanged.

Specified by:

windowDeactivated in interface WindowListener

Parameters:

event - DOCUMENT ME!

windowDeiconified

public void windowDeiconified(WindowEvent event)

Unchanged.

Specified by:

windowDeiconified in interface WindowListener

Parameters:

event - DOCUMENT ME!

windowIconified

public void windowIconified(WindowEvent event)

Unchanged.

Specified by:

windowIconified in interface WindowListener

Parameters:

event - DOCUMENT ME!

windowOpened

public void windowOpened(WindowEvent event)

Unchanged.

Specified by:

windowOpened in interface WindowListener

Parameters:

event - DOCUMENT ME!

buildFitFunctPanel

private void buildFitFunctPanel()

Creates a panel to edit various fitted function features. (Panel is to be used in the tabbed pane of the Modify Graph Dialog box

buildFunctionPanel

private void buildFunctionPanel()

Creates a panel where various features of the functions can be edited, such as showing the legend, and changing function names. This panel is used by the tabbed pane in Modify Graph Dialog Box.

buildMenu

private void buildMenu()

Function that builds the menu of various tools to be used in conjunction with the graph. ie: opening / saving files, changing gridlines, title / axis labels, etc.

buildModifyGraphPanel

private void buildModifyGraphPanel()

Creats a panel where various featuers of the graph can be edited, such as visbility of gridlines and minor tick marks, number of gridlines, background color, range, and labels for the title, x and y axiis.

createModifyDialog

private void createModifyDialog()

Creates a dialog box in which the user can modify various features of the graph.

getMedian

private float getMedian(float[] toSort)

DOCUMENT ME!

Parameters:

toSort - DOCUMENT ME!

Returns:

DOCUMENT ME!

parseString

private float[] parseString(String s,
 int len)

DOCUMENT ME!

Parameters:

s - DOCUMENT ME!

len - DOCUMENT ME!

Returns:

DOCUMENT ME!

print

private void print()

Prints the current graph being displayed to the printer.

save

public void save()
          throws IOException

Saves this graph as Excel data so that Excel can read in the data and graph it as an Excel file. The file can also be saved to be viewed at a later time with MIPAV

Throws:

IOException - DOCUMENT ME!

save

public void save(String fileName)
          throws IOException

Saves this graph as Excel data so that Excel can read in the data and graph it as an Excel file. The file can also be saved to be viewed at a later time with MIPAV

Throws:

IOException - DOCUMENT ME!

tableOutput

private void tableOutput()

testMaxParameter

private boolean testMaxParameter(String str,
 float maxValue)

Tests that the entered parameter is above maxValue.

Parameters:

str - the value entered by the user

maxValue - the value that the entered paramater must be more than

Returns:

boolean result of test

testMinParameter

private boolean testMinParameter(String str,
 float minValue)

Tests that the entered parameter is below minValue.

Parameters:

str - the value entered by the user

minValue - the value that the variable should be less than

Returns:

boolean result of test

testParameter

private boolean testParameter(String str,
 int minValue,
 int maxValue)

Tests that the entered parameter is in range.

Parameters:

str - the value entered by the user

minValue - the minimum value this variable may be set to

maxValue - the maximum value this variable may be set to

Returns:

boolean result of test

updateModifyDialog

private void updateModifyDialog()

Updates fields of the Modify Graph Dialog which may have changed due to things such as adding/deleting functions.

getGraph

public ViewJComponentGraph getGraph()

getFrameGraphics

public Graphics getFrameGraphics()

removeComponentListener

public void removeComponentListener()