Package gov.nih.mipav.model.file

Class FileSurfaceGiftiXML

java.lang.Object

gov.nih.mipav.model.file.FileBase

gov.nih.mipav.model.file.FileXML

gov.nih.mipav.model.file.FileSurfaceGiftiXML

Direct Known Subclasses:

FileSurfaceGiftiXML_WM

public abstract class FileSurfaceGiftiXML
extends FileXML

Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file. Defines specific variables for reading and writing surfaceref.xml files:

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

FileXML.XMLAttributes

Field Summary

Fields

Modifier and Type	Field	Description
protected static final String[]	ArrayIndexingOrderValues
protected static final String[]	CoordinateSystemTransformMatrixStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	DataArrayAttributes
protected static final String[]	DataArrayStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	DataSpaceValues
protected static final String[]	DataStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	DataTypeValues
protected static final String[]	EncodingTypes
protected static final String[]	EndianValues
protected static final String[]	GiftiAttributes
protected static final String[]	GiftiStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	IntentValues
protected static final String[]	LabelStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	LabelTableStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	MatrixDataStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	MDStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	MetaDataStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	NameStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	TransformedSpaceStr	array of strings representing the tags under in the Gifti xml schema.
protected static final String[]	ValueStr	array of strings representing the tags under in the Gifti xml schema.

Fields inherited from class gov.nih.mipav.model.file.FileXML

bw, fileDir, fileInfo, fileName, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, W3C_XML_SCHEMA, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase

BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors

Constructor	Description
FileSurfaceGiftiXML(String fName, String fDir)	Constructs new file object.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares class for cleanup.

Methods inherited from class gov.nih.mipav.model.file.FileXML

closedTag, closedTag, closedTag, openTag, readHeader, setPBar

Methods inherited from class gov.nih.mipav.model.file.FileBase

addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

CoordinateSystemTransformMatrixStr

protected static final String[] CoordinateSystemTransformMatrixStr

array of strings representing the tags under in the Gifti xml schema.

DataStr

protected static final String[] DataStr

array of strings representing the tags under in the Gifti xml schema.

DataArrayStr

protected static final String[] DataArrayStr

array of strings representing the tags under in the Gifti xml schema.

DataArrayAttributes

protected static final String[] DataArrayAttributes

IntentValues

protected static final String[] IntentValues

ArrayIndexingOrderValues

protected static final String[] ArrayIndexingOrderValues

DataTypeValues

protected static final String[] DataTypeValues

EndianValues

protected static final String[] EndianValues

EncodingTypes

protected static final String[] EncodingTypes

DataSpaceValues

protected static final String[] DataSpaceValues

GiftiStr

protected static final String[] GiftiStr

array of strings representing the tags under in the Gifti xml schema.

GiftiAttributes

protected static final String[] GiftiAttributes

LabelStr

protected static final String[] LabelStr

array of strings representing the tags under in the Gifti xml schema.

LabelTableStr

protected static final String[] LabelTableStr

array of strings representing the tags under in the Gifti xml schema.

MatrixDataStr

protected static final String[] MatrixDataStr

array of strings representing the tags under in the Gifti xml schema.

MDStr

protected static final String[] MDStr

array of strings representing the tags under in the Gifti xml schema.

MetaDataStr

protected static final String[] MetaDataStr

array of strings representing the tags under in the Gifti xml schema.

NameStr

protected static final String[] NameStr

array of strings representing the tags under in the Gifti xml schema.

TransformedSpaceStr

protected static final String[] TransformedSpaceStr

array of strings representing the tags under in the Gifti xml schema.

ValueStr

protected static final String[] ValueStr

array of strings representing the tags under in the Gifti xml schema.

Constructor Details

FileSurfaceGiftiXML

public FileSurfaceGiftiXML(String fName,
 String fDir)

Constructs new file object.

Parameters:

fName - File name.

fDir - File directory.

Method Details

finalize

public void finalize()

Prepares class for cleanup.

Overrides:

finalize in class FileXML