Package gov.nih.mipav.model.file

Class FileSurfaceGiftiXML

java.lang.Object

gov.nih.mipav.model.file.FileBase

gov.nih.mipav.model.file.FileXML

gov.nih.mipav.model.file.FileSurfaceGiftiXML

Direct Known Subclasses:

FileSurfaceGiftiXML_WM

public abstract class FileSurfaceGiftiXML
extends FileXML

Inherits from FileXML, reads SurfaceRef.XML files based on the "surfaceref.xsd" file. Defines specific variables for reading and writing surfaceref.xml files:

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

FileXML.XMLAttributes

Field Summary

Fields

Modifier and Type	Field	Description
protected static java.lang.String[]	ArrayIndexingOrderValues
protected static java.lang.String[]	CoordinateSystemTransformMatrixStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	DataArrayAttributes
protected static java.lang.String[]	DataArrayStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	DataSpaceValues
protected static java.lang.String[]	DataStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	DataTypeValues
protected static java.lang.String[]	EncodingTypes
protected static java.lang.String[]	EndianValues
protected static java.lang.String[]	GiftiAttributes
protected static java.lang.String[]	GiftiStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	IntentValues
protected static java.lang.String[]	LabelStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	LabelTableStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	MatrixDataStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	MDStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	MetaDataStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	NameStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	TransformedSpaceStr	array of strings representing the tags under in the Gifti xml schema.
protected static java.lang.String[]	ValueStr	array of strings representing the tags under in the Gifti xml schema.

Fields inherited from class gov.nih.mipav.model.file.FileXML

bw, fileDir, fileInfo, fileName, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, W3C_XML_SCHEMA, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase

BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors

Constructor	Description
FileSurfaceGiftiXML(java.lang.String fName, java.lang.String fDir)	Constructs new file object.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares class for cleanup.

Methods inherited from class gov.nih.mipav.model.file.FileXML

closedTag, closedTag, closedTag, openTag, readHeader, setPBar

Methods inherited from class gov.nih.mipav.model.file.FileBase

addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CoordinateSystemTransformMatrixStr

protected static final java.lang.String[] CoordinateSystemTransformMatrixStr

array of strings representing the tags under in the Gifti xml schema.

DataStr

protected static final java.lang.String[] DataStr

array of strings representing the tags under in the Gifti xml schema.

DataArrayStr

protected static final java.lang.String[] DataArrayStr

array of strings representing the tags under in the Gifti xml schema.

DataArrayAttributes

protected static final java.lang.String[] DataArrayAttributes

IntentValues

protected static final java.lang.String[] IntentValues

ArrayIndexingOrderValues

protected static final java.lang.String[] ArrayIndexingOrderValues

DataTypeValues

protected static final java.lang.String[] DataTypeValues

EndianValues

protected static final java.lang.String[] EndianValues

EncodingTypes

protected static final java.lang.String[] EncodingTypes

DataSpaceValues

protected static final java.lang.String[] DataSpaceValues

GiftiStr

protected static final java.lang.String[] GiftiStr

array of strings representing the tags under in the Gifti xml schema.

GiftiAttributes

protected static final java.lang.String[] GiftiAttributes

LabelStr

protected static final java.lang.String[] LabelStr

array of strings representing the tags under in the Gifti xml schema.

LabelTableStr

protected static final java.lang.String[] LabelTableStr

array of strings representing the tags under in the Gifti xml schema.

MatrixDataStr

protected static final java.lang.String[] MatrixDataStr

array of strings representing the tags under in the Gifti xml schema.

MDStr

protected static final java.lang.String[] MDStr

array of strings representing the tags under in the Gifti xml schema.

MetaDataStr

protected static final java.lang.String[] MetaDataStr

array of strings representing the tags under in the Gifti xml schema.

NameStr

protected static final java.lang.String[] NameStr

array of strings representing the tags under in the Gifti xml schema.

TransformedSpaceStr

protected static final java.lang.String[] TransformedSpaceStr

array of strings representing the tags under in the Gifti xml schema.

ValueStr

protected static final java.lang.String[] ValueStr

array of strings representing the tags under in the Gifti xml schema.

Constructor Detail

FileSurfaceGiftiXML

public FileSurfaceGiftiXML(java.lang.String fName,
                           java.lang.String fDir)

Constructs new file object.

Parameters:

fName - File name.

fDir - File directory.

Method Detail

finalize

public void finalize()

Prepares class for cleanup.

Overrides:

finalize in class FileXML