Package gov.nih.mipav.view.renderer.WildMagic.VOI

Class VOILatticeManagerInterface

java.lang.Object

gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

gov.nih.mipav.view.renderer.WildMagic.VOI.VOILatticeManagerInterface

All Implemented Interfaces:

VOIListener, VOIVectorListener, VOIHandlerInterface, java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.util.EventListener, javax.swing.event.MouseInputListener

public class VOILatticeManagerInterface
extends VOIManagerInterface

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

VOIManagerInterface.OkColorListener

Field Summary

Fields

Modifier and Type	Field	Description
private javax.swing.JTextField	defaultVoxelSize
private boolean	doAnnotations
private boolean	doAutomaticLabels
private boolean	isShiftSelected
private LatticeModel	latticeModel
private boolean	mouseSelection3D
private boolean	movingPickedPoint
private javax.swing.JDialog	updateVoxelSize
static float	VoxelSize

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

colorChooser, currentColor, imageStatList, listenerList, m_kCurrentVOIGroup, m_kImageA, m_kImageB, m_kParent, m_kRedoList, m_kUndoList, m_kVOIDialog, m_kVOIManagers, popup, popupPt, renderer, saveGroup, voiMenu, voiMenuBuilder

Constructor Summary

Constructors

Constructor	Description
VOILatticeManagerInterface(VOIManagerInterfaceListener kParent, ModelImage kImageA, ModelImage kImageB, int iNViews, boolean bGPU, javax.swing.ButtonGroup kVOIGroup)	Creates a VOIManagerInterface object.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(java.awt.event.ActionEvent event)
void	add3DMarker(VOI textVOI, boolean automaticLabel, boolean multiSelect)
void	add3DMarker(VOI textVOI, boolean automaticLabel, boolean multiSelect, boolean isShift)
void	addAnnotation(VOI textVOI)	Add an annotation to the latticeModel.
void	addAnnotation(VOI textVOI, boolean multiSelect)	Add an annotation to the latticeModel.
void	addAnnotationListener(AnnotationListener listener)	Adds an annotation listener to the latticeModel.
void	addAnnotations(VOIVector annotations)
void	addCurveListener(CurveListener listener)
void	addLatticeListener(LatticeListener listener)
private void	addLeftRightMarker(VOI textVOI, boolean isShift)
void	addSplineControlPts(java.util.Vector<VOIWormAnnotation> controlPts)
void	addVOI(VOIBase kNew, boolean bQuickLUT, boolean bUpdate, boolean isFinished)	Add a new VOIBase.
void	clear3DSelection()
void	colorAnnotations(boolean setColor)
void	deleteAnnotations()
void	deleteSelectedCurve()
void	deleteSelectedPoint()
boolean	doAutomaticLabels()	Returns the automatic labels flag.
void	editAnnotations(boolean automaticLabels)	Enable editing annotations in either 3D or 2D windows with the mouse.
void	editClip()
void	editLattice()
static VOIBase	findNearestAnnotation(VOI annotations, WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt)
void	flipLattice()
WildMagic.LibGraphics.SceneGraph.TriMesh	generateTriMesh(int stepsize)
java.lang.String	getAnnotationPrefix()
VOI	getAnnotations()	Returns list of annotations from lattice model.
VOI	getAnnotationsStraight()
int	getCurrentIndex()
VOIVector	getLattice()
int	getLatticeCurveLength()
WildMagic.LibFoundation.Mathematics.Vector3f	getLatticePickedPoint()
VOIVector	getLatticeStraight()
java.util.Vector<VOIWormAnnotation>	getPickedAnnotation()
java.util.Vector<java.lang.String>	getSplineCurves()
boolean	hasSelectedPoint()
protected void	initVOIManagers(int iNViews)
boolean	is3DSelectionEnabled()
boolean	isCurveSelected(java.lang.String name)
boolean	isEditAnnotations()
boolean	isModelDisplayed()
boolean	isPreview()
boolean	isShift()
void	keyPressed(java.awt.event.KeyEvent e)
void	keyReleased(java.awt.event.KeyEvent e)
boolean	modify3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt)
private boolean	modifyAnnotations(WildMagic.LibFoundation.Mathematics.Vector3f pt)
private boolean	modifyLattice(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt)
void	mouseReleased(java.awt.event.MouseEvent e)
void	moveSelectedPoint(WildMagic.LibFoundation.Mathematics.Vector3f direction)
void	openAnnotations(java.lang.String directory, java.lang.String fileName)
void	openLattice(java.lang.String directory, java.lang.String fileName)
void	openNeuriteCurves(java.lang.String dir)
protected void	redoVOIs()
void	removeListeners()
VOI	retwistAnnotations(VOIVector lattice)
VOIVector	retwistLattice(VOIVector lattice)
void	saveLattice(java.lang.String directory, java.lang.String fileName)
void	saveNeuriteCurves()
boolean	select3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt, boolean rightMouse, boolean multiSelect, boolean isShift)
private boolean	selectAnnotations(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt, boolean rightMouse, boolean multiSelect)
private boolean	selectLattice(WildMagic.LibFoundation.Mathematics.Vector3f startPt, WildMagic.LibFoundation.Mathematics.Vector3f endPt, WildMagic.LibFoundation.Mathematics.Vector3f pt, boolean isShift)
void	setAnnotationPrefix(java.lang.String s)
void	setAnnotations(VOI annotations)
void	setAnnotations(VOIVector annotations)
void	setCurveName(java.lang.String oldName, java.lang.String newName)
void	setCurveSelected(java.lang.String name, boolean selected)
void	setCurveVisible(java.lang.String name, boolean visible)
void	setImage(ModelImage imageA, ModelImage imageB)	Set the new imageA and imageB for creating VOIs.
void	setLattice(VOIVector lattice)
void	setLatticeClip(boolean clip, int position)
void	setPaddingFactor(int padding)
void	setPreviewMode(boolean preview, VOIVector lattice, VOI annotations)
void	setSharedDirectory(java.lang.String dir)
private void	setVoxelSize()
void	showLattice(boolean display)
void	showLatticeLabels(boolean display)
void	showModel(boolean display)
protected void	undoVOIs()
ModelImage	untwistAnnotations(java.lang.String dir, ModelImage image)
ModelImage[]	untwistTest(VolumeImage[] stack)	Untwists the worm image quickly for the preview mode - without saving any images or statistics
void	updateAnnotation(VOIText annotation)
void	updateCrossSection(boolean useSpline, boolean ellipse, float percent)
void	updateLattice(boolean isLeft, VOIWormAnnotation text, VOIWormAnnotation newText)
void	updateManager(int index, int orientation)
void	updateSelectedPoint(java.awt.Color color)

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

addedCurve, addedVOI, addVOIManager, addVOIUpdateListener, algorithmPerformed, clearUndoRedo, colorChanged, deleteSelectedVOI, deleteVOI, deleteVOIs, disposeLocal, doVOI, extractNumber, fireVOISelectionChange, fireVOISelectionChange, getActiveImage, getBufferFloat, getBufferInt, getBufferShort, getByte, getComponentImage, getPointerButton, getToolBar, getVOI_ID, getVOIManager, getVOIManagerNum, getVOIState, graph25VOI_CalcInten, isNewVoiNeeded, loadAllImageJVOIsFrom, loadAllVOIsFrom, make3DVOI, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, moveVOI, moveVOI, newVOI, newVOI, pasteVOI, propVOI, propVOIAll, quickLUT, removedCurve, removedVOI, removeVOIManager, removeVOIUpdateListener, resetLivewire, saveVOIs, selectAllVOIs, selectedVOI, setActive, setButtonColor, setCenter, setCenter, setCursor, setDefaultCursor, setEnabled, setOpacity, setPointerButton, setPresetHue, setRenderer, setSelectedVOI, setVOI_IDs, setVOIState, setVOITools, showColorDialog, showCurvatureInfo, showIntensityInfo, showStatisticsCalculator, showVOIProperties, updateDisplay, updateGraph, vectorSelected

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

doAnnotations

private boolean doAnnotations

doAutomaticLabels

private boolean doAutomaticLabels

mouseSelection3D

private boolean mouseSelection3D

VoxelSize

public static float VoxelSize

latticeModel

private LatticeModel latticeModel

defaultVoxelSize

private javax.swing.JTextField defaultVoxelSize

updateVoxelSize

private javax.swing.JDialog updateVoxelSize

movingPickedPoint

private boolean movingPickedPoint

isShiftSelected

private boolean isShiftSelected

Constructor Detail

VOILatticeManagerInterface

public VOILatticeManagerInterface(VOIManagerInterfaceListener kParent,
                                  ModelImage kImageA,
                                  ModelImage kImageB,
                                  int iNViews,
                                  boolean bGPU,
                                  javax.swing.ButtonGroup kVOIGroup)

Creates a VOIManagerInterface object.

Parameters:

kParent - the parent frame, must be a VOIManagerInterfaceListener

kImageA - imageA

kImageB - imageB

iNViews - number of views displayed in the parent.

bGPU - set to true if this VOIManagerInterface is part of the GPU-based Volume Renderer.

kVOIGroup - for ViewJFrameImage and ViewJFrameTriImage, so the VOI Toolbar can be part of a larger button group.

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class VOIManagerInterface

getAnnotationPrefix

public java.lang.String getAnnotationPrefix()

setAnnotationPrefix

public void setAnnotationPrefix(java.lang.String s)

getCurrentIndex

public int getCurrentIndex()

colorAnnotations

public void colorAnnotations(boolean setColor)

removeListeners

public void removeListeners()

addAnnotationListener

public void addAnnotationListener(AnnotationListener listener)

Adds an annotation listener to the latticeModel.

Parameters:

listener -

addCurveListener

public void addCurveListener(CurveListener listener)

addLatticeListener

public void addLatticeListener(LatticeListener listener)

editAnnotations

public void editAnnotations(boolean automaticLabels)

Enable editing annotations in either 3D or 2D windows with the mouse.

Parameters:

automaticLabels - if true the labels are created with numbers only (no leading 'A' for annotation).

isEditAnnotations

public boolean isEditAnnotations()

doAutomaticLabels

public boolean doAutomaticLabels()

Returns the automatic labels flag.

Returns:

editLattice

public void editLattice()

editClip

public void editClip()

openLattice

public void openLattice(java.lang.String directory,
                        java.lang.String fileName)

saveLattice

public void saveLattice(java.lang.String directory,
                        java.lang.String fileName)

openNeuriteCurves

public void openNeuriteCurves(java.lang.String dir)

saveNeuriteCurves

public void saveNeuriteCurves()

setLattice

public void setLattice(VOIVector lattice)

untwistTest

public ModelImage[] untwistTest(VolumeImage[] stack)

Untwists the worm image quickly for the preview mode - without saving any images or statistics

Returns:

untwisted image.

untwistAnnotations

public ModelImage untwistAnnotations(java.lang.String dir,
                                     ModelImage image)

openAnnotations

public void openAnnotations(java.lang.String directory,
                            java.lang.String fileName)

addAnnotations

public void addAnnotations(VOIVector annotations)

setAnnotations

public void setAnnotations(VOIVector annotations)

setAnnotations

public void setAnnotations(VOI annotations)

add3DMarker

public void add3DMarker(VOI textVOI,
                        boolean automaticLabel,
                        boolean multiSelect)

isShift

public boolean isShift()

add3DMarker

public void add3DMarker(VOI textVOI,
                        boolean automaticLabel,
                        boolean multiSelect,
                        boolean isShift)

clear3DSelection

public void clear3DSelection()

flipLattice

public void flipLattice()

is3DSelectionEnabled

public boolean is3DSelectionEnabled()

select3DMarker

public boolean select3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt,
                              boolean rightMouse,
                              boolean multiSelect,
                              boolean isShift)

modify3DMarker

public boolean modify3DMarker(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt)

deleteSelectedPoint

public void deleteSelectedPoint()

hasSelectedPoint

public boolean hasSelectedPoint()

getPickedAnnotation

public java.util.Vector<VOIWormAnnotation> getPickedAnnotation()

moveSelectedPoint

public void moveSelectedPoint(WildMagic.LibFoundation.Mathematics.Vector3f direction)

updateSelectedPoint

public void updateSelectedPoint(java.awt.Color color)

setImage

public void setImage(ModelImage imageA,
                     ModelImage imageB)

Set the new imageA and imageB for creating VOIs.

Parameters:

imageA -

imageB -

setSharedDirectory

public void setSharedDirectory(java.lang.String dir)

updateManager

public void updateManager(int index,
                          int orientation)

initVOIManagers

protected void initVOIManagers(int iNViews)

Overrides:

initVOIManagers in class VOIManagerInterface

redoVOIs

protected void redoVOIs()

Overrides:

redoVOIs in class VOIManagerInterface

undoVOIs

protected void undoVOIs()

Overrides:

undoVOIs in class VOIManagerInterface

deleteAnnotations

public void deleteAnnotations()

showModel

public void showModel(boolean display)

isModelDisplayed

public boolean isModelDisplayed()

updateCrossSection

public void updateCrossSection(boolean useSpline,
                               boolean ellipse,
                               float percent)

showLattice

public void showLattice(boolean display)

showLatticeLabels

public void showLatticeLabels(boolean display)

setLatticeClip

public void setLatticeClip(boolean clip,
                           int position)

generateTriMesh

public WildMagic.LibGraphics.SceneGraph.TriMesh generateTriMesh(int stepsize)

setPaddingFactor

public void setPaddingFactor(int padding)

addSplineControlPts

public void addSplineControlPts(java.util.Vector<VOIWormAnnotation> controlPts)

addAnnotation

public void addAnnotation(VOI textVOI,
                          boolean multiSelect)

Add an annotation to the latticeModel.

Parameters:

textVOI - new annotation.

addAnnotation

public void addAnnotation(VOI textVOI)

Add an annotation to the latticeModel.

Parameters:

textVOI - new annotation.

getAnnotations

public VOI getAnnotations()

Returns list of annotations from lattice model.

Returns:

latticeModel annotations.

getAnnotationsStraight

public VOI getAnnotationsStraight()

getSplineCurves

public java.util.Vector<java.lang.String> getSplineCurves()

setCurveVisible

public void setCurveVisible(java.lang.String name,
                            boolean visible)

setCurveName

public void setCurveName(java.lang.String oldName,
                         java.lang.String newName)

setCurveSelected

public void setCurveSelected(java.lang.String name,
                             boolean selected)

isCurveSelected

public boolean isCurveSelected(java.lang.String name)

deleteSelectedCurve

public void deleteSelectedCurve()

getLatticePickedPoint

public WildMagic.LibFoundation.Mathematics.Vector3f getLatticePickedPoint()

getLattice

public VOIVector getLattice()

getLatticeCurveLength

public int getLatticeCurveLength()

getLatticeStraight

public VOIVector getLatticeStraight()

isPreview

public boolean isPreview()

setPreviewMode

public void setPreviewMode(boolean preview,
                           VOIVector lattice,
                           VOI annotations)

retwistAnnotations

public VOI retwistAnnotations(VOIVector lattice)

retwistLattice

public VOIVector retwistLattice(VOIVector lattice)

addLeftRightMarker

private void addLeftRightMarker(VOI textVOI,
                                boolean isShift)

addVOI

public void addVOI(VOIBase kNew,
                   boolean bQuickLUT,
                   boolean bUpdate,
                   boolean isFinished)

Description copied from class: VOIManagerInterface

Add a new VOIBase. This function should only be called from VOIManager when a new VOIBase is created with the mouse.

Overrides:

addVOI in class VOIManagerInterface

Parameters:

kNew - the new VOIBase to add.

bQuickLUT - true if this is a QuickLUT VOI.

bUpdate - when true call updateDisplay() after the VOIBase is added

isFinished - true if this VOIBase is complete, used for open contours.

modifyLattice

private boolean modifyLattice(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt)

selectLattice

private boolean selectLattice(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                              WildMagic.LibFoundation.Mathematics.Vector3f pt,
                              boolean isShift)

modifyAnnotations

private boolean modifyAnnotations(WildMagic.LibFoundation.Mathematics.Vector3f pt)

selectAnnotations

private boolean selectAnnotations(WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                                  WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                                  WildMagic.LibFoundation.Mathematics.Vector3f pt,
                                  boolean rightMouse,
                                  boolean multiSelect)

updateAnnotation

public void updateAnnotation(VOIText annotation)

updateLattice

public void updateLattice(boolean isLeft,
                          VOIWormAnnotation text,
                          VOIWormAnnotation newText)

setVoxelSize

private void setVoxelSize()

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Overrides:

mouseReleased in class VOIManagerInterface

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

findNearestAnnotation

public static VOIBase findNearestAnnotation(VOI annotations,
                                            WildMagic.LibFoundation.Mathematics.Vector3f startPt,
                                            WildMagic.LibFoundation.Mathematics.Vector3f endPt,
                                            WildMagic.LibFoundation.Mathematics.Vector3f pt)