Package gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview

Class JPanelBrainSurfaceFlattener

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

gov.nih.mipav.view.renderer.JPanelRendererBase

gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

gov.nih.mipav.view.renderer.J3D.surfaceview.brainflattenerview.JPanelBrainSurfaceFlattener

All Implemented Interfaces:

ViewImageUpdateInterface, ActionListener, FocusListener, ItemListener, KeyListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible

public class JPanelBrainSurfaceFlattener
extends JPanelRendererJ3D
implements ViewImageUpdateInterface

DOCUMENT ME!

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	m_bFileLoaded	DOCUMENT ME!
private boolean	m_bFirstSurface	DOCUMENT ME!
private int	m_iGridY	DOCUMENT ME!
private JButton	m_kButtonLoadImage	DOCUMENT ME!
private JButton	m_kButtonLoadSurface	DOCUMENT ME!
private javax.vecmath.Point3f	m_kCenter	DOCUMENT ME!
private JRadioButton	m_kDisablePick	DOCUMENT ME!
private ButtonGroup	m_kDisplayButtonGroup	DOCUMENT ME!
private JRadioButton	m_kDisplayPlane	DOCUMENT ME!
private JRadioButton	m_kDisplaySphere	DOCUMENT ME!
private File	m_kFile	DOCUMENT ME!
private ModelImage	m_kImage	DOCUMENT ME!
private String	m_kImageDir	DOCUMENT ME!
private String	m_kImageFile	DOCUMENT ME!
private JLabel	m_kLabelFileName	DOCUMENT ME!
private JLabel	m_kLabelFileNameImage	DOCUMENT ME!
private JCheckBox	m_kLatLonLines	DOCUMENT ME!
private ModelLUT	m_kLUTa	DOCUMENT ME!
private ModelImage	m_kLUTImageA	DOCUMENT ME!
private JTextField	m_kNumLatText	DOCUMENT ME!
private JTextField	m_kNumLonText	DOCUMENT ME!
private JFrameHistogram	m_kPanelBrainsurfaceFlattenerLUT	DOCUMENT ME!
private ViewJFrameVolumeView	m_kParentFrame	DOCUMENT ME!
private ButtonGroup	m_kPickButtonGroup	DOCUMENT ME!
private JRadioButton	m_kPickCorrespondence	DOCUMENT ME!
private JRadioButton	m_kPickPuncture	DOCUMENT ME!
private String	m_kSurfaceDir	DOCUMENT ME!
private ModelTriangleMesh	m_kTriangleMesh	DOCUMENT ME!
private MjCorticalAnalysis	m_kView	DOCUMENT ME!
private static final long	serialVersionUID	Use serialVersionUID for interoperability.

Fields inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

rayBasedRender, renderBase

Fields inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

applyButton, cancelButton, cancelFlag, closeButton, helpButton, isActiveImage, mainPanel, NEW, OKButton, REPLACE, runInSeparateThread, serif12, serif12B

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
JPanelBrainSurfaceFlattener(MjCorticalAnalysis kView, ModelImage kImage, ViewJFrameVolumeView kParentFrame)	Create the control-panel for the brainsurfaceFlattener interface:

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.
private void	createLUTFromSurface()	Creates a LUT for the surface, where the curvature values are used in the look-up table instead of the ModelImage values:
private void	displayCorticalAnalysis()	Resets the Mesh Display, when the file is reloaded:
void	disposeLocal()	DOCUMENT ME!
protected void	finalize()	Delete all local member variables:
ModelImage	getImageA()	DOCUMENT ME!
ModelImage	getImageB()	DOCUMENT ME!
JPanel	getMainPanel()	Return the main control panel.
private void	init()	Initialize the user-interface, buttons and ActionCommands.
private void	loadingImage()	Load a new ModelImage for the brainsurface flattener scene:
private void	loadingSurface()	Load a new surface file for the brainsurface flattener scene:
void	setSlice(int slice)	setSlice.
void	setTimeSlice(int tSlice)	setTimeSlice.
boolean	updateImageExtents()	updateImageExtents.
boolean	updateImages()	updateImages.
boolean	updateImages(boolean flag)	updateImages.
boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean flag, int interpMode)	updateImages.

Methods inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

getSurfaceRender, setRayBasedRender, setSurfaceRender

Methods inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

buildApplyButton, buildCancelButton, buildCloseButton, buildHelpButton, buildOKButton, buildTitledBorder, focusGained, focusLost, isCancelled, itemStateChanged, keyPressed, keyReleased, keyTyped, makeString, resizePanel, setLeftHandSystem, setVisible, setVisibleStandard, setWCSystem, testParameter

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.FocusListener

focusGained, focusLost

Methods inherited from interface java.awt.event.ItemListener

itemStateChanged

Methods inherited from interface java.awt.event.KeyListener

keyPressed, keyReleased, keyTyped

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

m_bFileLoaded

private boolean m_bFileLoaded

DOCUMENT ME!

m_bFirstSurface

private boolean m_bFirstSurface

DOCUMENT ME!

m_iGridY

private int m_iGridY

DOCUMENT ME!

m_kButtonLoadImage

private JButton m_kButtonLoadImage

DOCUMENT ME!

m_kButtonLoadSurface

private JButton m_kButtonLoadSurface

DOCUMENT ME!

m_kCenter

private javax.vecmath.Point3f m_kCenter

DOCUMENT ME!

m_kDisablePick

private JRadioButton m_kDisablePick

DOCUMENT ME!

m_kDisplayButtonGroup

private ButtonGroup m_kDisplayButtonGroup

DOCUMENT ME!

m_kDisplayPlane

private JRadioButton m_kDisplayPlane

DOCUMENT ME!

m_kDisplaySphere

private JRadioButton m_kDisplaySphere

DOCUMENT ME!

m_kFile

private File m_kFile

DOCUMENT ME!

m_kImage

private ModelImage m_kImage

DOCUMENT ME!

m_kImageDir

private String m_kImageDir

DOCUMENT ME!

m_kImageFile

private String m_kImageFile

DOCUMENT ME!

m_kLabelFileName

private JLabel m_kLabelFileName

DOCUMENT ME!

m_kLabelFileNameImage

private JLabel m_kLabelFileNameImage

DOCUMENT ME!

m_kLatLonLines

private JCheckBox m_kLatLonLines

DOCUMENT ME!

m_kLUTa

private ModelLUT m_kLUTa

DOCUMENT ME!

m_kLUTImageA

private ModelImage m_kLUTImageA

DOCUMENT ME!

m_kNumLatText

private JTextField m_kNumLatText

DOCUMENT ME!

m_kNumLonText

private JTextField m_kNumLonText

DOCUMENT ME!

m_kPanelBrainsurfaceFlattenerLUT

private JFrameHistogram m_kPanelBrainsurfaceFlattenerLUT

DOCUMENT ME!

m_kParentFrame

private ViewJFrameVolumeView m_kParentFrame

DOCUMENT ME!

m_kPickButtonGroup

private ButtonGroup m_kPickButtonGroup

DOCUMENT ME!

m_kPickCorrespondence

private JRadioButton m_kPickCorrespondence

DOCUMENT ME!

m_kPickPuncture

private JRadioButton m_kPickPuncture

DOCUMENT ME!

m_kSurfaceDir

private String m_kSurfaceDir

DOCUMENT ME!

m_kTriangleMesh

private ModelTriangleMesh m_kTriangleMesh

DOCUMENT ME!

m_kView

private MjCorticalAnalysis m_kView

DOCUMENT ME!

Constructor Details

JPanelBrainSurfaceFlattener

public JPanelBrainSurfaceFlattener(MjCorticalAnalysis kView,
 ModelImage kImage,
 ViewJFrameVolumeView kParentFrame)

Create the control-panel for the brainsurfaceFlattener interface:

Parameters:

kView - the engine behind the brainsurfaceFlattener and one of the parent frames affected by the interface

kImage - the ModelImage data

kParentFrame - the parent frame for the panel, contains the surfaceRenderer, where the brain model is displayed

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Closes dialog box when the OK button is pressed, sets up the variables needed for running the algorithm, and calls the algorithm.

Specified by:

actionPerformed in interface ActionListener

Specified by:

actionPerformed in class JPanelRendererBase

Parameters:

event - Event that triggers function

disposeLocal

public void disposeLocal()

DOCUMENT ME!

Overrides:

disposeLocal in class JPanelRendererJ3D

getImageA

public ModelImage getImageA()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getImageB

public ModelImage getImageB()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getMainPanel

public JPanel getMainPanel()

Return the main control panel.

Specified by:

getMainPanel in class JPanelRendererBase

Returns:

JPanel the main control panel

setSlice

public void setSlice(int slice)

setSlice.

Specified by:

setSlice in interface ViewImageUpdateInterface

Parameters:

slice - int

setTimeSlice

public void setTimeSlice(int tSlice)

setTimeSlice.

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Parameters:

tSlice - int

updateImageExtents

public boolean updateImageExtents()

updateImageExtents.

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Returns:

boolean

updateImages

public boolean updateImages()

updateImages.

Specified by:

updateImages in interface ViewImageUpdateInterface

Returns:

boolean

updateImages

public boolean updateImages(boolean flag)

updateImages.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

flag - boolean

Returns:

boolean

updateImages

public boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean flag,
 int interpMode)

updateImages.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

LUTa - ModelLUT

LUTb - ModelLUT

flag - boolean

interpMode - int

Returns:

boolean

finalize

protected void finalize()
                 throws Throwable

Delete all local member variables:

Overrides:

finalize in class JPanelRendererBase

Throws:

Throwable - DOCUMENT ME!

createLUTFromSurface

private void createLUTFromSurface()

Creates a LUT for the surface, where the curvature values are used in the look-up table instead of the ModelImage values:

displayCorticalAnalysis

private void displayCorticalAnalysis()

Resets the Mesh Display, when the file is reloaded:

init

private void init()

Initialize the user-interface, buttons and ActionCommands.

loadingImage

private void loadingImage()

Load a new ModelImage for the brainsurface flattener scene:

loadingSurface

private void loadingSurface()

Load a new surface file for the brainsurface flattener scene: