Package gov.nih.mipav.view.dialogs

Class JDialogPrincipalComponents

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogPrincipalComponents
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogPrincipalComponents extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery
Dialog to create a filtered image using only selected principal components in the reconstruction and also to create an averaged image slice by simple averaging of the reconstructed image. The source image must be a 3D black and white image or a 2D or 3D color image
See Also:

  • Field Details

    • serialVersionUID

      private static final long serialVersionUID
      Use serialVersionUID for interoperability.
      See Also:

    • averagedImageCheckbox

      private JCheckBox averagedImageCheckbox
      DOCUMENT ME!

    • displayAndAsk

      private boolean displayAndAsk
      DOCUMENT ME!

    • displayPCheckbox

      private JCheckBox displayPCheckbox
      DOCUMENT ME!

    • doAveraging

      private boolean doAveraging
      DOCUMENT ME!

    • doFilter

      private boolean doFilter
      DOCUMENT ME!

    • filteredImageCheckbox

      private JCheckBox filteredImageCheckbox
      DOCUMENT ME!

    • imageFrame

      private ViewJFrameImage[] imageFrame
      DOCUMENT ME!

    • imageNumber

      private int imageNumber
      DOCUMENT ME!

    • imageType

      private int imageType
      DOCUMENT ME!

    • iNumber

      private int iNumber
      DOCUMENT ME!

    • labelNumber

      private JLabel labelNumber
      DOCUMENT ME!

    • nPlanes

      private int nPlanes
      DOCUMENT ME!

    • pComponentAlgo

      private AlgorithmPrincipalComponents pComponentAlgo
      DOCUMENT ME!

    • pNumber

      private int pNumber
      DOCUMENT ME!

    • resultImage

      private ModelImage[] resultImage
      DOCUMENT ME!

    • srcImage

      private ModelImage srcImage
      DOCUMENT ME!

    • textNumber

      private JTextField textNumber
      DOCUMENT ME!

    • matchImage

      private ModelImage matchImage

    • buttonMatchFile

      private JButton buttonMatchFile

    • textMatchFile

      private JTextField textMatchFile

    • directoryMatch

      private String directoryMatch

    • fileNameMatch

      private String fileNameMatch

    • UI

      private ViewUserInterface UI

    • doMahalanobisDistance

      private boolean doMahalanobisDistance

    • distanceGroup

      private ButtonGroup distanceGroup

    • EuclideanButton

      private JRadioButton EuclideanButton

    • MahalanobisButton

      private JRadioButton MahalanobisButton

  • Constructor Details

    • JDialogPrincipalComponents

      public JDialogPrincipalComponents()
      Empty constructor needed for dynamic instantiation (used during scripting).

    • JDialogPrincipalComponents

      public JDialogPrincipalComponents(Frame theParentFrame, ModelImage image)
      Creates new dialog to get info to run principal components algorithm.
      Parameters:
      theParentFrame - Parent frame
      image - Source image

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      actionPerformed - Closes dialog box when the OK button is pressed and calls the algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - event that triggers function

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • getResultImage

      public ModelImage[] getResultImage()
      Accessor that returns the result image.
      Returns:
      DOCUMENT ME!

    • setDisplayAndAsk

      public void setDisplayAndAsk(boolean displayAndAsk)
      DOCUMENT ME!
      Parameters:
      displayAndAsk - DOCUMENT ME!

    • setDoAveraging

      public void setDoAveraging(boolean doAveraging)
      DOCUMENT ME!
      Parameters:
      doAveraging - DOCUMENT ME!

    • setDoFilter

      public void setDoFilter(boolean doFilter)
      DOCUMENT ME!
      Parameters:
      doFilter - DOCUMENT ME!

    • setPNumber

      public void setPNumber(int pNumber)
      DOCUMENT ME!
      Parameters:
      pNumber - DOCUMENT ME!

    • callAlgorithm

      protected void callAlgorithm()
      run.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • doPostAlgorithmActions

      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      Overrides:
      doPostAlgorithmActions in class JDialogScriptableBase

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • init

      private void init()
      Initializes GUI components and adds them to the dialog.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.

    • getActionMetadata

      public ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      Specified by:
      getActionMetadata in interface ActionDiscovery
      Returns:
      Metadata for this action.

    • createInputParameters

      public ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      Specified by:
      createInputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the inputs of this algorithm.

    • createOutputParameters

      public ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      Specified by:
      createOutputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the outputs of this algorithm.

    • getOutputImageName

      public String getOutputImageName(String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      Specified by:
      getOutputImageName in interface ActionDiscovery
      Parameters:
      imageParamName - The output image parameter label for which to get the image name.
      Returns:
      The image name of the requested output image parameter label.

    • isActionComplete

      public boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      Specified by:
      isActionComplete in interface ActionDiscovery
      Returns:
      True, if the action is complete. False, if the action failed or is still running.