java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - gov.nih.mipav.view.renderer.JPanelRendererBase
        
        gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D
        
        gov.nih.mipav.view.renderer.J3D.JPanelClip

All Implemented Interfaces:

com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener
```
public class JPanelClip
extends JPanelRendererJ3D
implements javax.swing.event.ChangeListener, java.awt.event.MouseListener, com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback, java.awt.event.MouseMotionListener
```
Title: JPanelClip

Description: Clip panel control of the surface renderer. The clipping control includes x, y, z clipping sliders; the arbitrary and static eye clipping sliders.

Author:

Ruida Cheng

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`(package private) class`	`JPanelClip.CancelListener`	Does nothing.
`(package private) class`	`JPanelClip.DrawingPanel`	Wrapper in order to hold the control panel layout in the JScrollPane.
`(package private) class`	`JPanelClip.OkColorListener`	Pick up the selected color and call method to change the VOI color.

Nested classes/interfaces inherited from class javax.swing.JPanel
javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent
javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.vecmath.Vector4f[]`	`AclipPlanePts`	Arbitrary clipping plane four corners points.
`private com.sun.j3d.utils.behaviors.mouse.MouseRotate`	`arbiMouseRotateBehavior`	Mouse Rotate behavior of the arbitrary clipping plane.
`private javax.media.j3d.TransformGroup`	`arbiTG`	Tranform group for arbitrary clipping plane.
`private javax.media.j3d.Transform3D`	`arbiTrans3d`	Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
`private javax.media.j3d.Switch`	`arbitrary_SG`	Arbitrary clipping plane switch group.
`private int`	`aSlice`	Which arbitray clipping slice is currently displayed.
`private float`	`axisAngle`	Value attribute for the roation axis.
`private float`	`axisX`	Value attribute for the roation axis.
`private float`	`axisY`	Value attribute for the roation axis.
`private float`	`axisZ`	Value attribute for the roation axis.
`private javax.media.j3d.BranchGroup`	`behaviorBG`	The BranchGroup to which the arbitrary behaviors are attached and rotate.
`private javax.swing.JCheckBox`	`boundingCheckA`	Arbitrary and static clipping plane check box.
`private javax.swing.JCheckBox`	`boundingCheckStatic`	Arbitrary and static clipping plane check box.
`private javax.swing.JCheckBox`	`boundingCheckStaticInv`	Arbitrary and static clipping plane check box.
`private javax.swing.JCheckBox`	`boundingCheckX`	Check box to turn the clipping plane frame on and off.
`private javax.swing.JCheckBox`	`boundingCheckXInv`	X,Y,Z inverse clipping plane check box.
`private javax.swing.JCheckBox`	`boundingCheckY`	Check box to turn the clipping plane frame on and off.
`private javax.swing.JCheckBox`	`boundingCheckYInv`	X,Y,Z inverse clipping plane check box.
`private javax.swing.JCheckBox`	`boundingCheckZ`	Check box to turn the clipping plane frame on and off.
`private javax.swing.JCheckBox`	`boundingCheckZInv`	X,Y,Z inverse clipping plane check box.
`private javax.swing.JCheckBox`	`boxA`	Static and static inverse, arbitrary clipping plane check box.
`private javax.swing.JCheckBox`	`boxStatic`	Static and static inverse, arbitrary clipping plane check box.
`private javax.swing.JCheckBox`	`boxStaticInv`	Static and static inverse, arbitrary clipping plane check box.
`private javax.swing.JCheckBox`	`boxX`	Check boxes that turn the image plane and the sliders on and off.
`private javax.swing.JCheckBox`	`boxXInv`	Check boxes that turn the image plane and the sliders on and off.
`private javax.swing.JCheckBox`	`boxY`	Check boxes that turn the image plane and the sliders on and off.
`private javax.swing.JCheckBox`	`boxYInv`	Check boxes that turn the image plane and the sliders on and off.
`private javax.swing.JCheckBox`	`boxZ`	Check boxes that turn the image plane and the sliders on and off.
`private javax.swing.JCheckBox`	`boxZInv`	Check boxes that turn the image plane and the sliders on and off.
`private int`	`clipCount`	Counters show the event number in the mouse recorder.
`private MouseEventVector`	`clipEvents`	Mouse event vector that record the clipping plane sliders changes.
`private ViewJComponentBoxSlice`	`clipSliceA`	Arbitrary clipping plane yellow boundary indicator box.
`private javax.media.j3d.BranchGroup`	`clipSliceA_BG`	Arbitrary clipping branch group.
`private ViewJComponentBoxSlice`	`clipSliceAIndicator`	Arbitrary clipping plane yellow boundary indicator box.
`private javax.media.j3d.BranchGroup`	`clipSliceAIndicator_BG`	Arbitrary clipping branch group.
`private ViewJComponentBoxSlice`	`clipSliceStatic`	Static clipping plane boundary box.
`private ViewJComponentBoxSlice`	`clipSliceStaticInv`	Static clipping plane boundary box.
`private ViewJComponentBoxSlice`	`clipSliceX`	The bounding box frame around the clipping planes.
`private ViewJComponentBoxSlice`	`clipSliceXInv`	X, Y, Z inverse clipping slice boundary box.
`private ViewJComponentBoxSlice`	`clipSliceY`	The bounding box frame around the clipping planes.
`private ViewJComponentBoxSlice`	`clipSliceYInv`	X, Y, Z inverse clipping slice boundary box.
`private ViewJComponentBoxSlice`	`clipSliceZ`	The bounding box frame around the clipping planes.
`private ViewJComponentBoxSlice`	`clipSliceZInv`	X, Y, Z inverse clipping slice boundary box.
`private javax.swing.JSlider`	`clipSliderStatic`	Static, static inverse and arbitrary clipping plane boundary box.
`private javax.swing.JSlider`	`clipSliderStaticInv`	Static, static inverse and arbitrary clipping plane boundary box.
`private javax.swing.JSlider`	`clipSliderX`	Sliders for the image planes.
`private javax.swing.JSlider`	`clipSliderY`	Sliders for the image planes.
`private javax.swing.JSlider`	`clipSliderZ`	Sliders for the image planes.
`private javax.swing.JButton`	`colorButtonA`	Color button for the arbitrary clipping plane frame.
`private javax.swing.JButton`	`colorButtonStatic`	Color button for the static clipping plane frame.
`private javax.swing.JButton`	`colorButtonStaticInv`	Color button for the static clipping plane frame.
`private javax.swing.JButton`	`colorButtonX`	Color button for X clipping plane frame.
`private javax.swing.JButton`	`colorButtonXInv`	Color button for X clipping plane frame.
`private javax.swing.JButton`	`colorButtonY`	Color button for Y clipping plane frame.
`private javax.swing.JButton`	`colorButtonYInv`	Color button for Y clipping plane frame.
`private javax.swing.JButton`	`colorButtonZ`	Color button for Z clipping plane frame.
`private javax.swing.JButton`	`colorButtonZInv`	Color button for Z clipping plane frame.
`private ViewJColorChooser`	`colorChooser`	Color chooser dialog.
`(package private) boolean[]`	`enables`	Enable flags for the 6 ( X, Y, Z and inverse ) clipping planes.
`(package private) boolean[]`	`enablesArbi`	Enable flags for the arbitrary clipping planes.
`(package private) boolean[]`	`enablesStatic`	Enable flags for the static clipping planes.
`private javax.vecmath.Vector4d`	`eqnA`	Vector4D clipping equation of each clipping plane.
`private javax.vecmath.Vector4d[]`	`eqnPlanes`	Vetor holding the clipping plane equations.
`private javax.vecmath.Vector4d[]`	`eqnPlanesArbi`	Vetor holding the clipping plane equations.
`private javax.vecmath.Vector4d[]`	`eqnPlanesStatic`	Vetor holding the clipping plane equations.
`private javax.vecmath.Vector4d`	`eqnX`	Vector4D clipping equation of each clipping plane.
`private javax.vecmath.Vector4d`	`eqnXInv`	Vector4D clipping equation of each clipping plane.
`private javax.vecmath.Vector4d`	`eqnY`	Vector4D clipping equation of each clipping plane.
`private javax.vecmath.Vector4d`	`eqnYInv`	Vector4D clipping equation of each clipping plane.
`private javax.vecmath.Vector4d`	`eqnZ`	Vector4D clipping equation of each clipping plane.
`private javax.vecmath.Vector4d`	`eqnZInv`	Vector4D clipping equation of each clipping plane.
`private javax.swing.JButton`	`extractButtonA`	Extract arbitrary cliping plane button.
`private javax.swing.JButton`	`extractButtonS`	Extract static eye cliping plane button.
`private javax.vecmath.Point3f[]`	`intersectionPts`	intersectioin points coordinate.
`private int`	`iNumLights`	12 possible intersection points.
`private boolean`	`is6PlaneClipping`	Flag to indicate 6 plane clipping is active.
`private boolean`	`isClipArbiPicked`	Arbitrary clipping plane frame being picked or not.
`private boolean`	`isFirstTimeBuildTree`	First time to build the clipping plane tree.
`private boolean`	`isStateChangedEvent`	Flag to indicate StateChangeEvent invoked.
`private boolean`	`isTransformChanged`	Flag to indicate tranformChanged event invoked.
`private javax.swing.JLabel`	`labelA`	Static cliiping slider labels.
`private javax.swing.JLabel`	`labelAEnd`	Arbitrary clipping slider labels.
`private javax.swing.JLabel`	`labelAMid`	Arbitrary clipping slider labels.
`private javax.swing.JLabel`	`labelAStart`	Arbitrary clipping slider labels.
`private javax.swing.JLabel`	`labelStatic`	Static cliiping slider labels.
`private javax.swing.JLabel`	`labelStaticEnd`	Static clipping plane labels.
`private javax.swing.JLabel`	`labelStaticInv`	Static cliiping slider labels.
`private javax.swing.JLabel`	`labelStaticInvEnd`	Static inverse clipping plane labels.
`private javax.swing.JLabel`	`labelStaticInvMid`	Static inverse clipping plane labels.
`private javax.swing.JLabel`	`labelStaticInvStart`	Static inverse clipping plane labels.
`private javax.swing.JLabel`	`labelStaticMid`	Static clipping plane labels.
`private javax.swing.JLabel`	`labelStaticStart`	Static clipping plane labels.
`private javax.swing.JLabel`	`labelX`	Sliders labels.
`private javax.swing.JLabel`	`labelXEnd`	Slider tick labels.
`private javax.swing.JLabel`	`labelXEndInv`	X clipping slider labels.
`private javax.swing.JLabel`	`labelXInv`	Sliders labels.
`private javax.swing.JLabel`	`labelXMid`	Slider tick labels.
`private javax.swing.JLabel`	`labelXMidInv`	X clipping slider labels.
`private javax.swing.JLabel`	`labelXStart`	Slider tick labels.
`private javax.swing.JLabel`	`labelXStartInv`	X clipping slider labels.
`private javax.swing.JLabel`	`labelY`	Sliders labels.
`private javax.swing.JLabel`	`labelYEnd`	Y clipping slider labels.
`private javax.swing.JLabel`	`labelYEndInv`	Y inverse clipping slider labels.
`private javax.swing.JLabel`	`labelYInv`	Sliders labels.
`private javax.swing.JLabel`	`labelYMid`	Y clipping slider labels.
`private javax.swing.JLabel`	`labelYMidInv`	Y inverse clipping slider labels.
`private javax.swing.JLabel`	`labelYStart`	Y clipping slider labels.
`private javax.swing.JLabel`	`labelYStartInv`	Y inverse clipping slider labels.
`private javax.swing.JLabel`	`labelZ`	Sliders labels.
`private javax.swing.JLabel`	`labelZEnd`	Z clipping slider labels.
`private javax.swing.JLabel`	`labelZEndInv`	Z clipping slider labels.
`private javax.swing.JLabel`	`labelZInv`	Sliders labels.
`private javax.swing.JLabel`	`labelZMid`	Z clipping slider labels.
`private javax.swing.JLabel`	`labelZMidInv`	Z clipping slider labels.
`private javax.swing.JLabel`	`labelZStart`	Z clipping slider labels.
`private javax.swing.JLabel`	`labelZStartInv`	Z clipping slider labels.
`private int[]`	`m_aiImageA_backup`	Backup of the data for undo:.
`private int[]`	`m_aiImageB_backup`	ImageB backup buffer.
`private javax.media.j3d.BranchGroup[]`	`m_akLightBG`	Parent of each light bulb.
`private javax.media.j3d.Material[]`	`m_akLightMaterials`	Material properties for each light bulb.
`private com.sun.j3d.utils.geometry.Sphere[]`	`m_akLightSpheres`	Shapes representing light bulbs.
`private javax.media.j3d.TransformGroup[]`	`m_akLightTransformGroup`	Parent transform group.
`private javax.media.j3d.BranchGroup`	`m_kLightRoot`	Parent of all the light bulbs.
`private float`	`maxBox`	The largest of xBox,yBox,and zBox.
`private int`	`maxDim`	The largest dimension of xDim, yDim and zDim.
`private javax.media.j3d.ModelClip`	`mc`	Global model clip object.
`private javax.media.j3d.ModelClip`	`mcArbi`	Global model clip object.
`private javax.media.j3d.BranchGroup`	`mcArbiBG`	Branch group of the arbitrary clipping plane.
`private javax.media.j3d.BranchGroup`	`mcArbiExtendBG`	Branch group of the arbitrary clipping plane.
`private javax.media.j3d.TransformGroup`	`mcArbiTG`	ModelClip arbitrary TransformGroup.
`private javax.media.j3d.Transform3D`	`mcArbiTrans3D`	Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
`private javax.media.j3d.BranchGroup`	`mcBG`	Branch group of the 6 clipping planes.
`private javax.media.j3d.BranchGroup`	`mcExtendBG`	Branch group of the arbitrary clipping plane.
`private javax.media.j3d.ModelClip`	`mcStatic`	Global model clip object.
`private javax.media.j3d.BranchGroup`	`mcStaticBG`	Branch group of the static clipping plane.
`private javax.media.j3d.BranchGroup`	`objClipSliceA_BG`	Arbitrary clipping branch group.
`private javax.media.j3d.BranchGroup`	`objClipSlices_BG`	root of all the clipping slices branch group.
`private javax.media.j3d.BranchGroup`	`objClipSliceStatic_BG`	Static clipping branch group.
`private javax.media.j3d.BranchGroup`	`objClipSliceStaticInv_BG`	Static clipping branch group.
`private javax.media.j3d.BranchGroup`	`objClipSliceX_BG`	Parent for each individual clip slices branch group, childen of objClipSlices_BG.
`private javax.media.j3d.BranchGroup`	`objClipSliceXInv_BG`	Parent of the -x, -y, -z clip slices branchgroup.
`private javax.media.j3d.BranchGroup`	`objClipSliceY_BG`	Parent for each individual clip slices branch group, childen of objClipSlices_BG.
`private javax.media.j3d.BranchGroup`	`objClipSliceYInv_BG`	Parent of the -x, -y, -z clip slices branchgroup.
`private javax.media.j3d.BranchGroup`	`objClipSliceZ_BG`	Parent for each individual clip slices branch group, childen of objClipSlices_BG.
`private javax.media.j3d.BranchGroup`	`objClipSliceZInv_BG`	Parent of the -x, -y, -z clip slices branchgroup.
`private javax.swing.JPanel`	`panelA`	Arbitrary and static control panels.
`private javax.swing.JPanel`	`panelS`	Arbitrary and static control panels.
`private javax.swing.JPanel`	`panelSInv`	Arbitrary and static control panels.
`private javax.swing.JPanel`	`panelX`	Declare each clipping plane control panel.
`private javax.swing.JPanel`	`panelXInv`	Declare each clipping plane control panel.
`private javax.swing.JPanel`	`panelY`	Declare each clipping plane control panel.
`private javax.swing.JPanel`	`panelYInv`	Declare each clipping plane control panel.
`private javax.swing.JPanel`	`panelZ`	Declare each clipping plane control panel.
`private javax.swing.JPanel`	`panelZInv`	Declare each clipping plane control panel.
`private float`	`radicalRatio`	Arbitrary clipping plane expanding ratio.
`private boolean`	`recordEventName`	Flag indicates whether to record the clip event name.
`private javax.vecmath.AxisAngle4f`	`rotationAxis`	Rotation axis to sync up the action for both ModelClip arbitrary clipping plane and the clipSliceA frame box transformGroup.
`private int`	`rotationCount`	Counters show the event number in the mouse recorder.
`private MouseEventVector`	`rotationEvent`	mouse rotation event vector for the arbitrary clipping plane.
`private javax.swing.JScrollPane`	`scroller`	The scroll pane holding the panel content.
`private JPanelClip.DrawingPanel`	`scrollPanel`	Scroll panel that holding all the control components.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.swing.JSlider`	`sliderA`	Static, static inverse and arbitrary clipping plane boundary box.
`private javax.swing.JSlider`	`sliderXInv`	Sliders for the image planes.
`private javax.swing.JSlider`	`sliderYInv`	Sliders for the image planes.
`private javax.swing.JSlider`	`sliderZInv`	Sliders for the image planes.
`private int`	`sSlice`	Record the current static clipping slice number.
`private int`	`sSliceInv`	Record the current static clipping slice number.
`private javax.swing.JTabbedPane`	`tabbedPane`	Tabbed Panel that hold the each clipping planes control box.
`private javax.swing.JTextField`	`textA`	Static and arbitrary text field.
`private javax.swing.JTextField`	`textStatic`	Static and arbitrary text field.
`private javax.swing.JTextField`	`textStaticInv`	Static and arbitrary text field.
`private javax.swing.JTextField`	`textX`	Text fields that display the slice number when slider moves.
`private javax.swing.JTextField`	`textXInv`	X, Y, Z inverse text field.
`private javax.swing.JTextField`	`textY`	Text fields that display the slice number when slider moves.
`private javax.swing.JTextField`	`textYInv`	X, Y, Z inverse text field.
`private javax.swing.JTextField`	`textZ`	Text fields that display the slice number when slider moves.
`private javax.swing.JTextField`	`textZInv`	X, Y, Z inverse text field.
`private float`	`xBox`	xBox, yBox, zBox from the parent scene.
`private int`	`xDim`	Image X, Y, Z dimension.
`private int`	`xSlice`	Which slice is currently displayed in the ZY plane.
`private int`	`xSliceInv`	Which slice is currently displayed in the ZY plane.
`private float`	`yBox`	xBox, yBox, zBox from the parent scene.
`private int`	`yDim`	Image X, Y, Z dimension.
`private int`	`ySlice`	Which slice is currently displayed in the XZ plane.
`private int`	`ySliceInv`	Which slice is currently displayed in the XZ plane.
`private float`	`zBox`	xBox, yBox, zBox from the parent scene.
`private int`	`zDim`	Image X, Y, Z dimension.
`private int`	`zSlice`	Which slice is currently displayed in the XY plane.
`private int`	`zSliceInv`	Which slice is currently displayed in the XY plane.

Fields inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D
rayBasedRender, renderBase

Fields inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase
applyButton, cancelButton, cancelFlag, closeButton, helpButton, isActiveImage, mainPanel, NEW, OKButton, REPLACE, runInSeparateThread, serif12, serif12B

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback
ROTATE, TRANSLATE, ZOOM

Constructor Summary

Constructors
Constructor	Description
`JPanelClip(SurfaceRender parent, float xBox, float yBox, float zBox)`	3D texture surface renderer clipping dialog control.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
`void`	`addClipSlice()`	Attach clipping plane branch group.
`void`	`addClipSliceA()`	Attach arbitrary clip slice bounding frame.
`void`	`addClipSliceStatic()`	Attach static clip slice bounding frame.
`void`	`addClipSliceStaticInv()`	Attach static inverse clip slice bounding frame.
`void`	`addClipSliceX()`	Attach X clip slice bounding frame.
`void`	`addClipSliceXInv()`	Attach X Invative clip slice bounding frame.
`void`	`addClipSliceY()`	Attach Y clip slice bounding frame.
`void`	`addClipSliceYInv()`	Attach Y Invative clip slice bounding frame.
`void`	`addClipSliceZ()`	Attach Z clip slice bounding frame.
`void`	`addClipSliceZInv()`	Attach Z Invative clip slice bounding frame.
`private void`	`addControlPanel(javax.swing.JPanel panel, java.awt.Component c, java.awt.GridBagConstraints gbc, int x, int y, int w, int h)`	Helper method that adds components to the control panel for the grid bag layout.
`void`	`addToModelClip(javax.media.j3d.BranchGroup root)`	Add a new branch group to model clip for clipping.
`protected void`	`backupImage(ModelImage kImageA, ModelImage kImageB)`	Called by the TextureSculptor or VolumeSculptor objects.
`void`	`buildClipPlanesTree()`	Build cliping planes tree structure.
`void`	`buildPanelA()`	Build the arbitrary clipping slider control panel.
`void`	`buildPanelS()`	Build static clipping slider control panel.
`void`	`buildPanelSInv()`	Build static inverse clipping slider control panel.
`void`	`buildPanelX()`	Build x slider control panel.
`void`	`buildPanelXInv()`	Build x negative clipping slider control panel.
`void`	`buildPanelY()`	Build the y clipping slider control panel.
`void`	`buildPanelYInv()`	Build the y negative clipping slider control panel.
`void`	`buildPanelZ()`	Build the z clipping slider control panel.
`void`	`buildPanelZInv()`	Build the z negative clipping slider control panel.
`void`	`cropVolume()`	Mask the clipped volume region with image min intensity value.
`void`	`disable6Planes()`	Disable the 6 clipping planes.
`void`	`disableClipA()`	Disable the arbitrary clipping.
`void`	`disableClipPlanes()`	Disable clipping planes when dialog window closed.
`void`	`disableClipPlanesArbi()`	Disable arbitrary clipping planes.
`void`	`disableStaticClipping()`	Disable the eye clipping plane.
`void`	`disableStaticInvClipping()`	Disable the eye inverse clipping plane.
`void`	`displayAClipPlanePts()`	Display the abitrary clipping plane corner points.
`void`	`displaySClipPlanePts()`	Display the static(eye) clipping plane corner points.
`void`	`dispose()`	Dispose memory.
`private void`	`drawSphere(int index, float x, float y, float z)`	Draw the red sphere with the given coordinate.
`void`	`enableClipArbiBehavior(boolean flag)`	Enable arbitrary clipping plane behavior.
`void`	`enableStaticClipping()`	Enable the eye clipping plane.
`void`	`enableStaticInvClipping()`	Enable the eye inverse clipping plane.
`void`	`EulerToQuat(javax.vecmath.Vector3d v, javax.vecmath.Quat4d q)`	Transform Euler angle to quaterion.
`WildMagic.LibFoundation.Mathematics.Vector3f[]`	`getAClipPlanePts()`	Get the arbitrary clipping plane four corners points.
`boolean`	`getAVisible()`	Return check box arbitrary selection value.
`float`	`getAxisAngle()`	Get rotation axis alpha value.
`float`	`getAxisX()`	Get rotation axis X value.
`float`	`getAxisY()`	Get rotation axis Y value.
`float`	`getAxisZ()`	Get rotation axis Z value.
`float`	`getBoundXInv()`	Get the location of the negative X slice bound.
`float`	`getBoundXPos()`	Get the location of the positive X slice bound.
`float`	`getBoundYInv()`	Get the location of the negative Y slice bound.
`float`	`getBoundYPos()`	Get the location of the positive Y slice bound.
`float`	`getBoundZInv()`	Get the location of the negative Z slice bound.
`float`	`getBoundZPos()`	Get the location of the positive Z slice bound.
`javax.swing.JPanel`	`getMainPanel()`	Get the main control panel.
`int`	`getSliceA()`	Get arbitray slider value.
`int`	`getSliceX()`	Get x slider value.
`int`	`getSliceXInv()`	Get x negative slider value.
`int`	`getSliceY()`	Get y slider value.
`int`	`getSliceYInv()`	Get y negative slider value.
`int`	`getSliceZ()`	Get z slider value.
`int`	`getSliceZInv()`	Get z negative slider value.
`javax.swing.JSlider`	`getSliderA()`	Get arbitrary slider.
`javax.swing.JSlider`	`getSliderX()`	Get x slider.
`javax.swing.JSlider`	`getSliderXInv()`	Get x negative slider.
`javax.swing.JSlider`	`getSliderY()`	Get y slider.
`javax.swing.JSlider`	`getSliderYInv()`	Get y negative slider.
`javax.swing.JSlider`	`getSliderZ()`	Get z slider.
`javax.swing.JSlider`	`getSliderZInv()`	Get z negative slider.
`boolean`	`getStaticInvVisible()`	Return check box static inverse selection value.
`boolean`	`getStaticVisible()`	Return check box static selection value.
`boolean`	`getXVisible()`	Return check box X selection value.
`boolean`	`getXVisibleInv()`	Return check box X negative selection value.
`boolean`	`getYVisible()`	Return check box Y selection value.
`boolean`	`getYVisibleInv()`	Return check box Y negative selection value.
`boolean`	`getZVisible()`	Return check box Z selection value.
`boolean`	`getZVisibleInv()`	Return check box Z negative selection value.
`void`	`hideClipSliceA()`	Hides the slice frame on arbitrary clipping plane slice.
`void`	`hideClipSliceStatic()`	Hides the static clipping plane box frame.
`void`	`hideClipSliceStaticInv()`	Hides the static inverset clipping plane box frame.
`void`	`hideClipSliceX()`	Hides the slice frame on clipping plane slice x.
`void`	`hideClipSliceXInv()`	Hides the slice frame on clipping plane slice -x.
`void`	`hideClipSliceY()`	Hides the slice frame on clipping plane slice y.
`void`	`hideClipSliceYInv()`	Hides the slice frame on clipping plane slice -y.
`void`	`hideClipSliceZ()`	Hides the slice frame on clipping plane slice z.
`void`	`hideClipSliceZInv()`	Hides the slice frame on clipping plane slice -z.
`void`	`init()`	Initializes GUI components.
`void`	`initClipSliceA()`	Move the arbitrary clipping bounding frame to initial position.
`void`	`initClipSliceStatic()`	Move the static clipping bounding frame to initial position.
`void`	`initClipSliceStaticInv()`	Move the static inverse clipping bounding frame to initial position.
`void`	`initClipSliceX()`	Move the X clipping bounding frame to initial position.
`void`	`initClipSliceXInv()`	Move the X Invative clipping bounding frame to initial position.
`void`	`initClipSliceY()`	Move the Y clipping bounding frame to initial position.
`void`	`initClipSliceYInv()`	Move the Y Nagative clipping bounding frame to initial position.
`void`	`initClipSliceZ()`	Move the Z clipping bounding frame to initial position.
`void`	`initClipSliceZInv()`	Move the Z Invative clipping bounding frame to initial position.
`private void`	`initSphereBranch()`	Initialize the red sphere image scene graph structure.
`void`	`invokeClippingPlanes()`	Invokes all the 6 clipping when 6 clipping checkbox is checked.
`boolean`	`is6PlaneClipping()`	Indicate whether the 6 clipping plane is active or not.
`boolean`	`isArbitraryClipping(javax.media.j3d.Shape3D pickeObject)`	Called by the JDialogSurface to find the current mouse event is from the arbitrary frame box moving or not.
`boolean`	`isClipArbiPicked()`	Return the flag for the arbitrary clipping plane frame being picked or not.
`boolean`	`isFirstTimeBuildTree()`	Return whether the clipping planes tree branch being built the first time.
`void`	`mouseClicked(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseDragged(java.awt.event.MouseEvent event)`	If recording, adds this mouse event to the mouseEvents vector found at location `current`.
`void`	`mouseEntered(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseExited(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseMoved(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mousePressed(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseReleased(java.awt.event.MouseEvent event)`	Used in MouseRecorder to stop one series of slide moves.
`void`	`QuatToEuler(javax.vecmath.Quat4d q1, javax.vecmath.Vector3d v)`	Transform a quaternion to euler.
`void`	`removeClipSlice()`	Removes the clip slices.
`void`	`removeClipSliceA()`	Detaches the slice frame on arbitrary clipping plane slice.
`void`	`removeClipSliceStatic()`	remove the static clipping plane box frame.
`void`	`removeClipSliceStaticInv()`	remove the static inverse clipping plane box frame.
`void`	`removeClipSliceX()`	Detaches the slice frame on clipping plane slice x.
`void`	`removeClipSliceXInv()`	Detaches the slice frame on clipping plane slice -x.
`void`	`removeClipSliceY()`	Detaches the slice frame on clipping plane slice y.
`void`	`removeClipSliceYInv()`	Detaches the slice frame on clipping plane slice -y.
`void`	`removeClipSliceZ()`	Detaches the slice frame on clipping plane slice z.
`void`	`removeClipSliceZInv()`	Detaches the slice frame on clipping plane slice -z.
`void`	`removeFromModelClip(javax.media.j3d.BranchGroup root)`	Remove the branch group passed in.
`void`	`resizePanel(int panelWidth, int frameHeight)`	Resizig the control panel with ViewJFrameVolumeView's frame width and height.
`void`	`saveCropImage()`	Save the cropped image.
`void`	`setArbiPlanePickable(boolean _picked)`	setGUI setup the flag of the arbitary clipping frame box.
`void`	`setASliderEnabled(boolean flag)`	Sets the arbitray clip slider and the labels. state given by `flag`.
`protected void`	`setBoxColor(javax.swing.JButton button, java.awt.Color color)`	Calls the appropriate method in the parent frame.
`void`	`setCheckBoxA(boolean isSelected)`	Set the slider arbitrary checkBox with the passed in value.
`void`	`setCheckBoxStatic(boolean isSelected)`	Set the slider Static checkBox with the passed in value.
`void`	`setCheckBoxStaticInv(boolean isSelected)`	Set the slider Static inverse checkBox with the passed in value.
`void`	`setCheckBoxX(boolean isSelected)`	Set the slider X checkBox with the passed in value.
`void`	`setCheckBoxXInv(boolean isSelected)`	Set the slider X inverse checkBox with the passed in value.
`void`	`setCheckBoxY(boolean isSelected)`	Set the slider Y checkBox with the passed in value.
`void`	`setCheckBoxYInv(boolean isSelected)`	Set the slider Y inverse checkBox with the passed in value.
`void`	`setCheckBoxZ(boolean isSelected)`	Set the slider Z checkBox with the passed in value.
`void`	`setCheckBoxZInv(boolean isSelected)`	Set the slider Z inverse checkBox with the passed in value.
`void`	`setClipSliceAColor(java.awt.Color color)`	Sets the color of the arbitrary clipping plane slice frame.
`void`	`setClipSliceAwithRotate(float _axisX, float _axisY, float _axisZ, float _axisAngle)`	During mouse recorder diaplay, setup the rotatino axis for both arbiTG and mcArbiTG.
`void`	`setClipSliceSColor(java.awt.Color color)`	Sets the color of the static clipping plane slice frame.
`void`	`setClipSliceSInvColor(java.awt.Color color)`	Sets the color of the static inverse clipping plane slice frame.
`void`	`setClipSliceXColor(java.awt.Color color)`	Sets the color of the x clipping plane slice frame.
`void`	`setClipSliceXInvColor(java.awt.Color color)`	Sets the color of the -x clipping plane slice frame.
`void`	`setClipSliceYColor(java.awt.Color color)`	Sets the color of the y cliping plane slice frame.
`void`	`setClipSliceYInvColor(java.awt.Color color)`	Sets the color of the -y cliping plane slice frame.
`void`	`setClipSliceZColor(java.awt.Color color)`	Sets the color of the z clipping plane slice frame.
`void`	`setClipSliceZInvColor(java.awt.Color color)`	Sets the color of the -z clipping plane slice frame.
`void`	`setStaticInvSliderEnabled(boolean flag)`	Sets the static inverse slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setStaticSliderEnabled(boolean flag)`	Sets the static slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setXSliderEnabled(boolean flag)`	Sets the x slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setXSliderInvEnabled(boolean flag)`	Sets the x slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setYSliderEnabled(boolean flag)`	Sets the y slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setYSliderInvEnabled(boolean flag)`	Sets the y slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setZSliderEnabled(boolean flag)`	Sets the z slider and the labels beside and beneath it to the state given by `flag`.
`void`	`setZSliderInvEnabled(boolean flag)`	Sets the z slider and the labels beside and beneath it to the state given by `flag`.
`void`	`stateChanged(javax.swing.event.ChangeEvent e)`	Sets how the image plane should be displayed depending on value of slider.
`void`	`swapModelClipBG(boolean flag)`	Swap ModelClip Branch group between the 6 clipping plane and the arbitray clipping plane.
`private void`	`transform(javax.vecmath.Vector4f vIn)`	Transform a point rotation inverse to the volume rotation.
`void`	`transformChanged(int type, javax.media.j3d.Transform3D transform)`	Needed for this to implement MouseBehaviorCallback.
`void`	`undoCrop()`	Undo the crop of the volume.
`void`	`updateClipPlanesEqn()`	Upadate six clipping planes' plane equation.
`void`	`updateClipSlice()`	Update clipping planes.
`void`	`updateClipSliceA()`	Sets new frame around arbitrary clip plane slice based on the new position.
`void`	`updateClipSliceAwithRotate(javax.media.j3d.Transform3D transform)`	Update arbitrary clip plane's transform.
`void`	`updateClipSliceStatic()`	Sets new frame around clip plane slice -z based on the new position.
`void`	`updateClipSliceStaticInv()`	Sets new frame around clip plane slice -z based on the new position.
`void`	`updateClipSliceX()`	Sets new frame around clip plane slice x based on the new position.
`void`	`updateClipSliceXInv()`	Sets new frame around clip plane slice -x based on the new position.
`void`	`updateClipSliceY()`	Sets new frame around clip plane slice y based on the new position.
`void`	`updateClipSliceYInv()`	Sets new frame around clip plane slice -y based on the new position.
`void`	`updateClipSliceZ()`	Sets new frame around clip plane slice z based on the new position.
`void`	`updateClipSliceZInv()`	Sets new frame around clip plane slice -z based on the new position.
`private void`	`updateVolumeRenderClipPlane()`	Update the volume render's clip plane with all new positions.
`void`	`windowClosing(java.awt.event.WindowEvent e)`	Accessor that closing the mouse recorder window frame.

Methods inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D
disposeLocal, getSurfaceRender, setRayBasedRender, setSurfaceRender

Methods inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase
buildApplyButton, buildCancelButton, buildCloseButton, buildHelpButton, buildOKButton, buildTitledBorder, finalize, focusGained, focusLost, isCancelled, itemStateChanged, keyPressed, keyReleased, keyTyped, makeString, setLeftHandSystem, setVisible, setVisibleStandard, setWCSystem, testParameter

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.FocusListener
focusGained, focusLost

Methods inherited from interface java.awt.event.ItemListener
itemStateChanged

Methods inherited from interface java.awt.event.KeyListener
keyPressed, keyReleased, keyTyped

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - enables
```
boolean[] enables
```
    Enable flags for the 6 ( X, Y, Z and inverse ) clipping planes.
  - enablesArbi
```
boolean[] enablesArbi
```
    Enable flags for the arbitrary clipping planes.
  - enablesStatic
```
boolean[] enablesStatic
```
    Enable flags for the static clipping planes.
  - AclipPlanePts
```
private javax.vecmath.Vector4f[] AclipPlanePts
```
    Arbitrary clipping plane four corners points.
  - arbiMouseRotateBehavior
```
private com.sun.j3d.utils.behaviors.mouse.MouseRotate arbiMouseRotateBehavior
```
    Mouse Rotate behavior of the arbitrary clipping plane.
  - arbiTG
```
private javax.media.j3d.TransformGroup arbiTG
```
    Tranform group for arbitrary clipping plane.
  - arbiTrans3d
```
private javax.media.j3d.Transform3D arbiTrans3d
```
    Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
  - mcArbiTrans3D
```
private javax.media.j3d.Transform3D mcArbiTrans3D
```
    Transform3D group for clipSliceA frame box and ModelClip arbitrary clipping plane.
  - arbitrary_SG
```
private javax.media.j3d.Switch arbitrary_SG
```
    Arbitrary clipping plane switch group.
  - aSlice
```
private int aSlice
```
    Which arbitray clipping slice is currently displayed.
  - axisX
```
private float axisX
```
    Value attribute for the roation axis.
  - axisY
```
private float axisY
```
    Value attribute for the roation axis.
  - axisZ
```
private float axisZ
```
    Value attribute for the roation axis.
  - axisAngle
```
private float axisAngle
```
    Value attribute for the roation axis.
  - behaviorBG
```
private javax.media.j3d.BranchGroup behaviorBG
```
    The BranchGroup to which the arbitrary behaviors are attached and rotate.
  - boundingCheckA
```
private javax.swing.JCheckBox boundingCheckA
```
    Arbitrary and static clipping plane check box.
  - boundingCheckStatic
```
private javax.swing.JCheckBox boundingCheckStatic
```
    Arbitrary and static clipping plane check box.
  - boundingCheckStaticInv
```
private javax.swing.JCheckBox boundingCheckStaticInv
```
    Arbitrary and static clipping plane check box.
  - boundingCheckX
```
private javax.swing.JCheckBox boundingCheckX
```
    Check box to turn the clipping plane frame on and off.
  - boundingCheckY
```
private javax.swing.JCheckBox boundingCheckY
```
    Check box to turn the clipping plane frame on and off.
  - boundingCheckZ
```
private javax.swing.JCheckBox boundingCheckZ
```
    Check box to turn the clipping plane frame on and off.
  - boundingCheckXInv
```
private javax.swing.JCheckBox boundingCheckXInv
```
    X,Y,Z inverse clipping plane check box.
  - boundingCheckYInv
```
private javax.swing.JCheckBox boundingCheckYInv
```
    X,Y,Z inverse clipping plane check box.
  - boundingCheckZInv
```
private javax.swing.JCheckBox boundingCheckZInv
```
    X,Y,Z inverse clipping plane check box.
  - boxStatic
```
private javax.swing.JCheckBox boxStatic
```
    Static and static inverse, arbitrary clipping plane check box.
  - boxStaticInv
```
private javax.swing.JCheckBox boxStaticInv
```
    Static and static inverse, arbitrary clipping plane check box.
  - boxA
```
private javax.swing.JCheckBox boxA
```
    Static and static inverse, arbitrary clipping plane check box.
  - boxX
```
private javax.swing.JCheckBox boxX
```
    Check boxes that turn the image plane and the sliders on and off.
  - boxY
```
private javax.swing.JCheckBox boxY
```
    Check boxes that turn the image plane and the sliders on and off.
  - boxZ
```
private javax.swing.JCheckBox boxZ
```
    Check boxes that turn the image plane and the sliders on and off.
  - boxXInv
```
private javax.swing.JCheckBox boxXInv
```
    Check boxes that turn the image plane and the sliders on and off.
  - boxYInv
```
private javax.swing.JCheckBox boxYInv
```
    Check boxes that turn the image plane and the sliders on and off.
  - boxZInv
```
private javax.swing.JCheckBox boxZInv
```
    Check boxes that turn the image plane and the sliders on and off.
  - clipCount
```
private int clipCount
```
    Counters show the event number in the mouse recorder.
  - rotationCount
```
private int rotationCount
```
    Counters show the event number in the mouse recorder.
  - clipEvents
```
private MouseEventVector clipEvents
```
    Mouse event vector that record the clipping plane sliders changes.
  - clipSliceAIndicator
```
private ViewJComponentBoxSlice clipSliceAIndicator
```
    Arbitrary clipping plane yellow boundary indicator box.
  - clipSliceA
```
private ViewJComponentBoxSlice clipSliceA
```
    Arbitrary clipping plane yellow boundary indicator box.
  - clipSliceStatic
```
private ViewJComponentBoxSlice clipSliceStatic
```
    Static clipping plane boundary box.
  - clipSliceStaticInv
```
private ViewJComponentBoxSlice clipSliceStaticInv
```
    Static clipping plane boundary box.
  - clipSliceX
```
private ViewJComponentBoxSlice clipSliceX
```
    The bounding box frame around the clipping planes.
  - clipSliceY
```
private ViewJComponentBoxSlice clipSliceY
```
    The bounding box frame around the clipping planes.
  - clipSliceZ
```
private ViewJComponentBoxSlice clipSliceZ
```
    The bounding box frame around the clipping planes.
  - clipSliceXInv
```
private ViewJComponentBoxSlice clipSliceXInv
```
    X, Y, Z inverse clipping slice boundary box.
  - clipSliceYInv
```
private ViewJComponentBoxSlice clipSliceYInv
```
    X, Y, Z inverse clipping slice boundary box.
  - clipSliceZInv
```
private ViewJComponentBoxSlice clipSliceZInv
```
    X, Y, Z inverse clipping slice boundary box.
  - clipSliderStatic
```
private javax.swing.JSlider clipSliderStatic
```
    Static, static inverse and arbitrary clipping plane boundary box.
  - clipSliderStaticInv
```
private javax.swing.JSlider clipSliderStaticInv
```
    Static, static inverse and arbitrary clipping plane boundary box.
  - sliderA
```
private javax.swing.JSlider sliderA
```
    Static, static inverse and arbitrary clipping plane boundary box.
  - clipSliderX
```
private javax.swing.JSlider clipSliderX
```
    Sliders for the image planes.
  - clipSliderY
```
private javax.swing.JSlider clipSliderY
```
    Sliders for the image planes.
  - clipSliderZ
```
private javax.swing.JSlider clipSliderZ
```
    Sliders for the image planes.
  - sliderXInv
```
private javax.swing.JSlider sliderXInv
```
    Sliders for the image planes.
  - sliderYInv
```
private javax.swing.JSlider sliderYInv
```
    Sliders for the image planes.
  - sliderZInv
```
private javax.swing.JSlider sliderZInv
```
    Sliders for the image planes.
  - colorButtonA
```
private javax.swing.JButton colorButtonA
```
    Color button for the arbitrary clipping plane frame.
  - colorButtonStatic
```
private javax.swing.JButton colorButtonStatic
```
    Color button for the static clipping plane frame.
  - colorButtonStaticInv
```
private javax.swing.JButton colorButtonStaticInv
```
    Color button for the static clipping plane frame.
  - colorButtonX
```
private javax.swing.JButton colorButtonX
```
    Color button for X clipping plane frame.
  - colorButtonXInv
```
private javax.swing.JButton colorButtonXInv
```
    Color button for X clipping plane frame.
  - colorButtonY
```
private javax.swing.JButton colorButtonY
```
    Color button for Y clipping plane frame.
  - colorButtonYInv
```
private javax.swing.JButton colorButtonYInv
```
    Color button for Y clipping plane frame.
  - colorButtonZ
```
private javax.swing.JButton colorButtonZ
```
    Color button for Z clipping plane frame.
  - colorButtonZInv
```
private javax.swing.JButton colorButtonZInv
```
    Color button for Z clipping plane frame.
  - colorChooser
```
private ViewJColorChooser colorChooser
```
    Color chooser dialog.
  - eqnPlanes
```
private javax.vecmath.Vector4d[] eqnPlanes
```
    Vetor holding the clipping plane equations.
  - eqnPlanesArbi
```
private javax.vecmath.Vector4d[] eqnPlanesArbi
```
    Vetor holding the clipping plane equations.
  - eqnPlanesStatic
```
private javax.vecmath.Vector4d[] eqnPlanesStatic
```
    Vetor holding the clipping plane equations.
  - eqnX
```
private javax.vecmath.Vector4d eqnX
```
    Vector4D clipping equation of each clipping plane.
  - eqnXInv
```
private javax.vecmath.Vector4d eqnXInv
```
    Vector4D clipping equation of each clipping plane.
  - eqnY
```
private javax.vecmath.Vector4d eqnY
```
    Vector4D clipping equation of each clipping plane.
  - eqnYInv
```
private javax.vecmath.Vector4d eqnYInv
```
    Vector4D clipping equation of each clipping plane.
  - eqnZ
```
private javax.vecmath.Vector4d eqnZ
```
    Vector4D clipping equation of each clipping plane.
  - eqnZInv
```
private javax.vecmath.Vector4d eqnZInv
```
    Vector4D clipping equation of each clipping plane.
  - eqnA
```
private javax.vecmath.Vector4d eqnA
```
    Vector4D clipping equation of each clipping plane.
  - extractButtonA
```
private javax.swing.JButton extractButtonA
```
    Extract arbitrary cliping plane button.
  - extractButtonS
```
private javax.swing.JButton extractButtonS
```
    Extract static eye cliping plane button.
  - intersectionPts
```
private javax.vecmath.Point3f[] intersectionPts
```
    intersectioin points coordinate.
  - iNumLights
```
private int iNumLights
```
    12 possible intersection points.
  - is6PlaneClipping
```
private boolean is6PlaneClipping
```
    Flag to indicate 6 plane clipping is active.
  - isClipArbiPicked
```
private boolean isClipArbiPicked
```
    Arbitrary clipping plane frame being picked or not.
  - isFirstTimeBuildTree
```
private boolean isFirstTimeBuildTree
```
    First time to build the clipping plane tree.
  - isStateChangedEvent
```
private boolean isStateChangedEvent
```
    Flag to indicate StateChangeEvent invoked.
  - isTransformChanged
```
private boolean isTransformChanged
```
    Flag to indicate tranformChanged event invoked.
  - labelAStart
```
private javax.swing.JLabel labelAStart
```
    Arbitrary clipping slider labels.
  - labelAMid
```
private javax.swing.JLabel labelAMid
```
    Arbitrary clipping slider labels.
  - labelAEnd
```
private javax.swing.JLabel labelAEnd
```
    Arbitrary clipping slider labels.
  - labelStatic
```
private javax.swing.JLabel labelStatic
```
    Static cliiping slider labels.
  - labelStaticInv
```
private javax.swing.JLabel labelStaticInv
```
    Static cliiping slider labels.
  - labelA
```
private javax.swing.JLabel labelA
```
    Static cliiping slider labels.
  - labelStaticInvStart
```
private javax.swing.JLabel labelStaticInvStart
```
    Static inverse clipping plane labels.
  - labelStaticInvMid
```
private javax.swing.JLabel labelStaticInvMid
```
    Static inverse clipping plane labels.
  - labelStaticInvEnd
```
private javax.swing.JLabel labelStaticInvEnd
```
    Static inverse clipping plane labels.
  - labelStaticStart
```
private javax.swing.JLabel labelStaticStart
```
    Static clipping plane labels.
  - labelStaticMid
```
private javax.swing.JLabel labelStaticMid
```
    Static clipping plane labels.
  - labelStaticEnd
```
private javax.swing.JLabel labelStaticEnd
```
    Static clipping plane labels.
  - labelX
```
private javax.swing.JLabel labelX
```
    Sliders labels.
  - labelY
```
private javax.swing.JLabel labelY
```
    Sliders labels.
  - labelZ
```
private javax.swing.JLabel labelZ
```
    Sliders labels.
  - labelXInv
```
private javax.swing.JLabel labelXInv
```
    Sliders labels.
  - labelYInv
```
private javax.swing.JLabel labelYInv
```
    Sliders labels.
  - labelZInv
```
private javax.swing.JLabel labelZInv
```
    Sliders labels.
  - labelXStart
```
private javax.swing.JLabel labelXStart
```
    Slider tick labels.
  - labelXMid
```
private javax.swing.JLabel labelXMid
```
    Slider tick labels.
  - labelXEnd
```
private javax.swing.JLabel labelXEnd
```
    Slider tick labels.
  - labelXStartInv
```
private javax.swing.JLabel labelXStartInv
```
    X clipping slider labels.
  - labelXMidInv
```
private javax.swing.JLabel labelXMidInv
```
    X clipping slider labels.
  - labelXEndInv
```
private javax.swing.JLabel labelXEndInv
```
    X clipping slider labels.
  - labelYStart
```
private javax.swing.JLabel labelYStart
```
    Y clipping slider labels.
  - labelYMid
```
private javax.swing.JLabel labelYMid
```
    Y clipping slider labels.
  - labelYEnd
```
private javax.swing.JLabel labelYEnd
```
    Y clipping slider labels.
  - labelYStartInv
```
private javax.swing.JLabel labelYStartInv
```
    Y inverse clipping slider labels.
  - labelYMidInv
```
private javax.swing.JLabel labelYMidInv
```
    Y inverse clipping slider labels.
  - labelYEndInv
```
private javax.swing.JLabel labelYEndInv
```
    Y inverse clipping slider labels.
  - labelZStart
```
private javax.swing.JLabel labelZStart
```
    Z clipping slider labels.
  - labelZMid
```
private javax.swing.JLabel labelZMid
```
    Z clipping slider labels.
  - labelZEnd
```
private javax.swing.JLabel labelZEnd
```
    Z clipping slider labels.
  - labelZStartInv
```
private javax.swing.JLabel labelZStartInv
```
    Z clipping slider labels.
  - labelZMidInv
```
private javax.swing.JLabel labelZMidInv
```
    Z clipping slider labels.
  - labelZEndInv
```
private javax.swing.JLabel labelZEndInv
```
    Z clipping slider labels.
  - m_aiImageA_backup
```
private int[] m_aiImageA_backup
```
    Backup of the data for undo:.
  - m_aiImageB_backup
```
private int[] m_aiImageB_backup
```
    ImageB backup buffer.
  - m_akLightBG
```
private javax.media.j3d.BranchGroup[] m_akLightBG
```
    Parent of each light bulb.
  - m_akLightMaterials
```
private javax.media.j3d.Material[] m_akLightMaterials
```
    Material properties for each light bulb.
  - m_akLightSpheres
```
private com.sun.j3d.utils.geometry.Sphere[] m_akLightSpheres
```
    Shapes representing light bulbs.
  - m_akLightTransformGroup
```
private javax.media.j3d.TransformGroup[] m_akLightTransformGroup
```
    Parent transform group.
  - m_kLightRoot
```
private javax.media.j3d.BranchGroup m_kLightRoot
```
    Parent of all the light bulbs.
  - maxBox
```
private float maxBox
```
    The largest of xBox,yBox,and zBox.
  - maxDim
```
private int maxDim
```
    The largest dimension of xDim, yDim and zDim.
  - mc
```
private javax.media.j3d.ModelClip mc
```
    Global model clip object.
  - mcArbi
```
private javax.media.j3d.ModelClip mcArbi
```
    Global model clip object.
  - mcStatic
```
private javax.media.j3d.ModelClip mcStatic
```
    Global model clip object.
  - mcArbiBG
```
private javax.media.j3d.BranchGroup mcArbiBG
```
    Branch group of the arbitrary clipping plane.
  - mcExtendBG
```
private javax.media.j3d.BranchGroup mcExtendBG
```
    Branch group of the arbitrary clipping plane.
  - mcArbiExtendBG
```
private javax.media.j3d.BranchGroup mcArbiExtendBG
```
    Branch group of the arbitrary clipping plane.
  - mcArbiTG
```
private javax.media.j3d.TransformGroup mcArbiTG
```
    ModelClip arbitrary TransformGroup.
  - mcBG
```
private javax.media.j3d.BranchGroup mcBG
```
    Branch group of the 6 clipping planes.
  - mcStaticBG
```
private javax.media.j3d.BranchGroup mcStaticBG
```
    Branch group of the static clipping plane.
  - objClipSliceA_BG
```
private javax.media.j3d.BranchGroup objClipSliceA_BG
```
    Arbitrary clipping branch group.
  - clipSliceA_BG
```
private javax.media.j3d.BranchGroup clipSliceA_BG
```
    Arbitrary clipping branch group.
  - clipSliceAIndicator_BG
```
private javax.media.j3d.BranchGroup clipSliceAIndicator_BG
```
    Arbitrary clipping branch group.
  - objClipSlices_BG
```
private javax.media.j3d.BranchGroup objClipSlices_BG
```
    root of all the clipping slices branch group.
  - objClipSliceStatic_BG
```
private javax.media.j3d.BranchGroup objClipSliceStatic_BG
```
    Static clipping branch group.
  - objClipSliceStaticInv_BG
```
private javax.media.j3d.BranchGroup objClipSliceStaticInv_BG
```
    Static clipping branch group.
  - objClipSliceX_BG
```
private javax.media.j3d.BranchGroup objClipSliceX_BG
```
    Parent for each individual clip slices branch group, childen of objClipSlices_BG.
  - objClipSliceY_BG
```
private javax.media.j3d.BranchGroup objClipSliceY_BG
```
    Parent for each individual clip slices branch group, childen of objClipSlices_BG.
  - objClipSliceZ_BG
```
private javax.media.j3d.BranchGroup objClipSliceZ_BG
```
    Parent for each individual clip slices branch group, childen of objClipSlices_BG.
  - objClipSliceXInv_BG
```
private javax.media.j3d.BranchGroup objClipSliceXInv_BG
```
    Parent of the -x, -y, -z clip slices branchgroup.
  - objClipSliceYInv_BG
```
private javax.media.j3d.BranchGroup objClipSliceYInv_BG
```
    Parent of the -x, -y, -z clip slices branchgroup.
  - objClipSliceZInv_BG
```
private javax.media.j3d.BranchGroup objClipSliceZInv_BG
```
    Parent of the -x, -y, -z clip slices branchgroup.
  - panelA
```
private javax.swing.JPanel panelA
```
    Arbitrary and static control panels.
  - panelS
```
private javax.swing.JPanel panelS
```
    Arbitrary and static control panels.
  - panelSInv
```
private javax.swing.JPanel panelSInv
```
    Arbitrary and static control panels.
  - panelX
```
private javax.swing.JPanel panelX
```
    Declare each clipping plane control panel.
  - panelXInv
```
private javax.swing.JPanel panelXInv
```
    Declare each clipping plane control panel.
  - panelY
```
private javax.swing.JPanel panelY
```
    Declare each clipping plane control panel.
  - panelYInv
```
private javax.swing.JPanel panelYInv
```
    Declare each clipping plane control panel.
  - panelZ
```
private javax.swing.JPanel panelZ
```
    Declare each clipping plane control panel.
  - panelZInv
```
private javax.swing.JPanel panelZInv
```
    Declare each clipping plane control panel.
  - radicalRatio
```
private float radicalRatio
```
    Arbitrary clipping plane expanding ratio.
  - recordEventName
```
private boolean recordEventName
```
    Flag indicates whether to record the clip event name.
  - rotationAxis
```
private javax.vecmath.AxisAngle4f rotationAxis
```
    Rotation axis to sync up the action for both ModelClip arbitrary clipping plane and the clipSliceA frame box transformGroup.
  - rotationEvent
```
private MouseEventVector rotationEvent
```
    mouse rotation event vector for the arbitrary clipping plane.
  - scroller
```
private javax.swing.JScrollPane scroller
```
    The scroll pane holding the panel content. Used when the screen is small.
  - scrollPanel
```
private JPanelClip.DrawingPanel scrollPanel
```
    Scroll panel that holding all the control components.
  - sSlice
```
private int sSlice
```
    Record the current static clipping slice number.
  - sSliceInv
```
private int sSliceInv
```
    Record the current static clipping slice number.
  - tabbedPane
```
private javax.swing.JTabbedPane tabbedPane
```
    Tabbed Panel that hold the each clipping planes control box.
  - textStatic
```
private javax.swing.JTextField textStatic
```
    Static and arbitrary text field.
  - textStaticInv
```
private javax.swing.JTextField textStaticInv
```
    Static and arbitrary text field.
  - textA
```
private javax.swing.JTextField textA
```
    Static and arbitrary text field.
  - textX
```
private javax.swing.JTextField textX
```
    Text fields that display the slice number when slider moves.
  - textY
```
private javax.swing.JTextField textY
```
    Text fields that display the slice number when slider moves.
  - textZ
```
private javax.swing.JTextField textZ
```
    Text fields that display the slice number when slider moves.
  - textXInv
```
private javax.swing.JTextField textXInv
```
    X, Y, Z inverse text field.
  - textYInv
```
private javax.swing.JTextField textYInv
```
    X, Y, Z inverse text field.
  - textZInv
```
private javax.swing.JTextField textZInv
```
    X, Y, Z inverse text field.
  - xBox
```
private float xBox
```
    xBox, yBox, zBox from the parent scene.
  - yBox
```
private float yBox
```
    xBox, yBox, zBox from the parent scene.
  - zBox
```
private float zBox
```
    xBox, yBox, zBox from the parent scene.
  - xDim
```
private int xDim
```
    Image X, Y, Z dimension.
  - yDim
```
private int yDim
```
    Image X, Y, Z dimension.
  - zDim
```
private int zDim
```
    Image X, Y, Z dimension.
  - xSlice
```
private int xSlice
```
    Which slice is currently displayed in the ZY plane.
  - xSliceInv
```
private int xSliceInv
```
    Which slice is currently displayed in the ZY plane.
  - ySlice
```
private int ySlice
```
    Which slice is currently displayed in the XZ plane.
  - ySliceInv
```
private int ySliceInv
```
    Which slice is currently displayed in the XZ plane.
  - zSlice
```
private int zSlice
```
    Which slice is currently displayed in the XY plane.
  - zSliceInv
```
private int zSliceInv
```
    Which slice is currently displayed in the XY plane.
- Constructor Detail
  - JPanelClip
```
public JPanelClip(SurfaceRender parent,
                  float xBox,
                  float yBox,
                  float zBox)
```
    3D texture surface renderer clipping dialog control.
    
    Parameters:
    
    parent - SurfaceRender Surface renderer reference
    
    xBox - float unit box x length
    
    yBox - float unit box y length
    
    zBox - float unit box z length
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Changes color of slices box frame and button if color button was pressed; turns bounding box on and off if checkbox was pressed.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Specified by:
    
    actionPerformed in class JPanelRendererBase
    
    Parameters:
    
    event - Event that triggered function.
  - addClipSlice
```
public void addClipSlice()
```
    Attach clipping plane branch group.
  - addClipSliceA
```
public void addClipSliceA()
```
    Attach arbitrary clip slice bounding frame.
  - addClipSliceStatic
```
public void addClipSliceStatic()
```
    Attach static clip slice bounding frame.
  - addClipSliceStaticInv
```
public void addClipSliceStaticInv()
```
    Attach static inverse clip slice bounding frame.
  - addClipSliceX
```
public void addClipSliceX()
```
    Attach X clip slice bounding frame.
  - addClipSliceXInv
```
public void addClipSliceXInv()
```
    Attach X Invative clip slice bounding frame.
  - addClipSliceY
```
public void addClipSliceY()
```
    Attach Y clip slice bounding frame.
  - addClipSliceYInv
```
public void addClipSliceYInv()
```
    Attach Y Invative clip slice bounding frame.
  - addClipSliceZ
```
public void addClipSliceZ()
```
    Attach Z clip slice bounding frame.
  - addClipSliceZInv
```
public void addClipSliceZInv()
```
    Attach Z Invative clip slice bounding frame.
  - addToModelClip
```
public void addToModelClip(javax.media.j3d.BranchGroup root)
```
    Add a new branch group to model clip for clipping.
    
    Parameters:
    
    root - BranchGroup Node.
  - buildClipPlanesTree
```
public void buildClipPlanesTree()
```
    Build cliping planes tree structure. This method being called when clipping plane menu selected in the surface render.
  - buildPanelA
```
public void buildPanelA()
```
    Build the arbitrary clipping slider control panel.
  - buildPanelS
```
public void buildPanelS()
```
    Build static clipping slider control panel.
  - buildPanelSInv
```
public void buildPanelSInv()
```
    Build static inverse clipping slider control panel.
  - buildPanelX
```
public void buildPanelX()
```
    Build x slider control panel.
  - buildPanelXInv
```
public void buildPanelXInv()
```
    Build x negative clipping slider control panel.
  - buildPanelY
```
public void buildPanelY()
```
    Build the y clipping slider control panel.
  - buildPanelYInv
```
public void buildPanelYInv()
```
    Build the y negative clipping slider control panel.
  - buildPanelZ
```
public void buildPanelZ()
```
    Build the z clipping slider control panel.
  - buildPanelZInv
```
public void buildPanelZInv()
```
    Build the z negative clipping slider control panel.
  - cropVolume
```
public void cropVolume()
```
    Mask the clipped volume region with image min intensity value.
  - disable6Planes
```
public void disable6Planes()
```
    Disable the 6 clipping planes.
  - disableClipA
```
public void disableClipA()
```
    Disable the arbitrary clipping.
  - disableClipPlanes
```
public void disableClipPlanes()
```
    Disable clipping planes when dialog window closed.
  - disableClipPlanesArbi
```
public void disableClipPlanesArbi()
```
    Disable arbitrary clipping planes.
  - disableStaticClipping
```
public void disableStaticClipping()
```
    Disable the eye clipping plane.
  - disableStaticInvClipping
```
public void disableStaticInvClipping()
```
    Disable the eye inverse clipping plane.
  - displayAClipPlanePts
```
public void displayAClipPlanePts()
```
    Display the abitrary clipping plane corner points.
  - displaySClipPlanePts
```
public void displaySClipPlanePts()
```
    Display the static(eye) clipping plane corner points.
  - dispose
```
public void dispose()
```
    Dispose memory.
  - enableClipArbiBehavior
```
public void enableClipArbiBehavior(boolean flag)
```
    Enable arbitrary clipping plane behavior.
    
    Parameters:
    
    flag - true enable arbitrary clipping mouse behavior, disable the scene graph mouse behavior; false disable arbitrary clipping mouse behavior, enable the scene graph mouse behavior.
  - enableStaticClipping
```
public void enableStaticClipping()
```
    Enable the eye clipping plane.
  - enableStaticInvClipping
```
public void enableStaticInvClipping()
```
    Enable the eye inverse clipping plane.
  - EulerToQuat
```
public final void EulerToQuat(javax.vecmath.Vector3d v,
                              javax.vecmath.Quat4d q)
```
    Transform Euler angle to quaterion. Not used for now.
    
    Parameters:
    
    v - Vector3d Euler angles
    
    q - Quat4d quaternion
  - getAClipPlanePts
```
public WildMagic.LibFoundation.Mathematics.Vector3f[] getAClipPlanePts()
```
    Get the arbitrary clipping plane four corners points.
    
    Returns:
    
    Vector3f[]
  - getAVisible
```
public boolean getAVisible()
```
    Return check box arbitrary selection value.
    
    Returns:
    
    boxA.isSelected() box arbitrary slection value.
  - getAxisAngle
```
public float getAxisAngle()
```
    Get rotation axis alpha value.
    
    Returns:
    
    aixsAngle alpha value.
  - getAxisX
```
public float getAxisX()
```
    Get rotation axis X value.
    
    Returns:
    
    aixsX x value.
  - getAxisY
```
public float getAxisY()
```
    Get rotation axis Y value.
    
    Returns:
    
    aixsY y value.
  - getAxisZ
```
public float getAxisZ()
```
    Get rotation axis Z value.
    
    Returns:
    
    aixsZ z value.
  - getBoundXInv
```
public float getBoundXInv()
```
    Get the location of the negative X slice bound.
    
    Returns:
    
    float Value in normalized range of [0,1].
  - getBoundXPos
```
public float getBoundXPos()
```
    Get the location of the positive X slice bound.
    
    Returns:
    
    float Value in normalized range of [0,1].
  - getBoundYInv
```
public float getBoundYInv()
```
    Get the location of the negative Y slice bound.
    
    Returns:
    
    float Value in normalized range of [0,1].
  - getBoundYPos
```
public float getBoundYPos()
```
    Get the location of the positive Y slice bound.
    
    Returns:
    
    float Value in normalized range of [0,1].
  - getBoundZInv
```
public float getBoundZInv()
```
    Get the location of the negative Z slice bound.
    
    Returns:
    
    float Value in normalized range of [0,1].
  - getBoundZPos
```
public float getBoundZPos()
```
    Get the location of the positive Z slice bound.
    
    Returns:
    
    float Value in normalized range of [0,1].
  - getMainPanel
```
public javax.swing.JPanel getMainPanel()
```
    Get the main control panel.
    
    Specified by:
    
    getMainPanel in class JPanelRendererBase
    
    Returns:
    
    mainPanel the whole control panel.
  - getSliceA
```
public int getSliceA()
```
    Get arbitray slider value.
    
    Returns:
    
    Arbitrary slider value.
  - getSliceX
```
public int getSliceX()
```
    Get x slider value.
    
    Returns:
    
    X clipping slider value.
  - getSliceXInv
```
public int getSliceXInv()
```
    Get x negative slider value.
    
    Returns:
    
    Get y clipping slider value
  - getSliceY
```
public int getSliceY()
```
    Get y slider value.
    
    Returns:
    
    Get y clipping slider value.
  - getSliceYInv
```
public int getSliceYInv()
```
    Get y negative slider value.
    
    Returns:
    
    Get y inverse clipping slider value.
  - getSliceZ
```
public int getSliceZ()
```
    Get z slider value.
    
    Returns:
    
    Get Z clippig slider value.
  - getSliceZInv
```
public int getSliceZInv()
```
    Get z negative slider value.
    
    Returns:
    
    get z inverse clipping slider value.
  - getSliderA
```
public javax.swing.JSlider getSliderA()
```
    Get arbitrary slider.
    
    Returns:
    
    get arbitrary clipping slider value.
  - getSliderX
```
public javax.swing.JSlider getSliderX()
```
    Get x slider.
    
    Returns:
    
    get x clipping slider value.
  - getSliderXInv
```
public javax.swing.JSlider getSliderXInv()
```
    Get x negative slider.
    
    Returns:
    
    get X inverse clipping slider value.
  - getSliderY
```
public javax.swing.JSlider getSliderY()
```
    Get y slider.
    
    Returns:
    
    get Y clipping slider value.
  - getSliderYInv
```
public javax.swing.JSlider getSliderYInv()
```
    Get y negative slider.
    
    Returns:
    
    get y inverse clipping slider value.
  - getSliderZ
```
public javax.swing.JSlider getSliderZ()
```
    Get z slider.
    
    Returns:
    
    get z clipping slider value.
  - getSliderZInv
```
public javax.swing.JSlider getSliderZInv()
```
    Get z negative slider.
    
    Returns:
    
    get z inverse clipping slider value.
  - getStaticInvVisible
```
public boolean getStaticInvVisible()
```
    Return check box static inverse selection value.
    
    Returns:
    
    boxZInv.isSelected() box z negative slection value.
  - getStaticVisible
```
public boolean getStaticVisible()
```
    Return check box static selection value.
    
    Returns:
    
    boxZInv.isSelected() box z negative slection value.
  - getXVisible
```
public boolean getXVisible()
```
    Return check box X selection value.
    
    Returns:
    
    boxX.isSelected() box X selection value.
  - getXVisibleInv
```
public boolean getXVisibleInv()
```
    Return check box X negative selection value.
    
    Returns:
    
    boxXInv.isSelected() box x negative slection value.
  - getYVisible
```
public boolean getYVisible()
```
    Return check box Y selection value.
    
    Returns:
    
    boxY.isSelected() box Y selection value.
  - getYVisibleInv
```
public boolean getYVisibleInv()
```
    Return check box Y negative selection value.
    
    Returns:
    
    boxYInv.isSelected() box y negative slection value.
  - getZVisible
```
public boolean getZVisible()
```
    Return check box Z selection value.
    
    Returns:
    
    boxZ.isSelected() box z selection value.
  - getZVisibleInv
```
public boolean getZVisibleInv()
```
    Return check box Z negative selection value.
    
    Returns:
    
    boxZInv.isSelected() box z negative slection value.
  - hideClipSliceA
```
public void hideClipSliceA()
```
    Hides the slice frame on arbitrary clipping plane slice.
  - hideClipSliceStatic
```
public void hideClipSliceStatic()
```
    Hides the static clipping plane box frame.
  - hideClipSliceStaticInv
```
public void hideClipSliceStaticInv()
```
    Hides the static inverset clipping plane box frame.
  - hideClipSliceX
```
public void hideClipSliceX()
```
    Hides the slice frame on clipping plane slice x.
  - hideClipSliceXInv
```
public void hideClipSliceXInv()
```
    Hides the slice frame on clipping plane slice -x.
  - hideClipSliceY
```
public void hideClipSliceY()
```
    Hides the slice frame on clipping plane slice y.
  - hideClipSliceYInv
```
public void hideClipSliceYInv()
```
    Hides the slice frame on clipping plane slice -y.
  - hideClipSliceZ
```
public void hideClipSliceZ()
```
    Hides the slice frame on clipping plane slice z.
  - hideClipSliceZInv
```
public void hideClipSliceZInv()
```
    Hides the slice frame on clipping plane slice -z.
  - init
```
public void init()
```
    Initializes GUI components.
  - initClipSliceA
```
public void initClipSliceA()
```
    Move the arbitrary clipping bounding frame to initial position.
  - initClipSliceStatic
```
public void initClipSliceStatic()
```
    Move the static clipping bounding frame to initial position.
  - initClipSliceStaticInv
```
public void initClipSliceStaticInv()
```
    Move the static inverse clipping bounding frame to initial position.
  - initClipSliceX
```
public void initClipSliceX()
```
    Move the X clipping bounding frame to initial position.
  - initClipSliceXInv
```
public void initClipSliceXInv()
```
    Move the X Invative clipping bounding frame to initial position.
  - initClipSliceY
```
public void initClipSliceY()
```
    Move the Y clipping bounding frame to initial position.
  - initClipSliceYInv
```
public void initClipSliceYInv()
```
    Move the Y Nagative clipping bounding frame to initial position.
  - initClipSliceZ
```
public void initClipSliceZ()
```
    Move the Z clipping bounding frame to initial position.
  - initClipSliceZInv
```
public void initClipSliceZInv()
```
    Move the Z Invative clipping bounding frame to initial position.
  - invokeClippingPlanes
```
public void invokeClippingPlanes()
```
    Invokes all the 6 clipping when 6 clipping checkbox is checked.
  - is6PlaneClipping
```
public boolean is6PlaneClipping()
```
    Indicate whether the 6 clipping plane is active or not.
    
    Returns:
    
    is6PlaneClipping true 6 clipping plane active, false arbitrary clippiing plane active.
  - isArbitraryClipping
```
public boolean isArbitraryClipping(javax.media.j3d.Shape3D pickeObject)
```
    Called by the JDialogSurface to find the current mouse event is from the arbitrary frame box moving or not.
    
    Parameters:
    
    pickeObject - Shape3D picked object from the JDialogSurface.
    
    Returns:
    
    true arbitrary frame box moves, false not moves
  - isClipArbiPicked
```
public boolean isClipArbiPicked()
```
    Return the flag for the arbitrary clipping plane frame being picked or not.
    
    Returns:
    
    isClipArbiPicked true picked, false not picked.
  - isFirstTimeBuildTree
```
public boolean isFirstTimeBuildTree()
```
    Return whether the clipping planes tree branch being built the first time.
    
    Returns:
    
    isFirstTimeBuildTree if true first time build the tree, false already built.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent event)
```
    If recording, adds this mouse event to the mouseEvents vector found at location current.
    
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseMoved in interface java.awt.event.MouseMotionListener
    
    Parameters:
    
    event - Original mouse event.
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent event)
```
    Used in MouseRecorder to stop one series of slide moves.
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - QuatToEuler
```
public void QuatToEuler(javax.vecmath.Quat4d q1,
                        javax.vecmath.Vector3d v)
```
    Transform a quaternion to euler. This method get the Euler angles from the volume rotation.
    
    Parameters:
    
    q1 - Quat4d quaternion.
    
    v - Vector3d euler
  - removeClipSlice
```
public void removeClipSlice()
```
    Removes the clip slices.
  - removeClipSliceA
```
public void removeClipSliceA()
```
    Detaches the slice frame on arbitrary clipping plane slice.
  - removeClipSliceStatic
```
public void removeClipSliceStatic()
```
    remove the static clipping plane box frame.
  - removeClipSliceStaticInv
```
public void removeClipSliceStaticInv()
```
    remove the static inverse clipping plane box frame.
  - removeClipSliceX
```
public void removeClipSliceX()
```
    Detaches the slice frame on clipping plane slice x.
  - removeClipSliceXInv
```
public void removeClipSliceXInv()
```
    Detaches the slice frame on clipping plane slice -x.
  - removeClipSliceY
```
public void removeClipSliceY()
```
    Detaches the slice frame on clipping plane slice y.
  - removeClipSliceYInv
```
public void removeClipSliceYInv()
```
    Detaches the slice frame on clipping plane slice -y.
  - removeClipSliceZ
```
public void removeClipSliceZ()
```
    Detaches the slice frame on clipping plane slice z.
  - removeClipSliceZInv
```
public void removeClipSliceZInv()
```
    Detaches the slice frame on clipping plane slice -z.
  - removeFromModelClip
```
public void removeFromModelClip(javax.media.j3d.BranchGroup root)
```
    Remove the branch group passed in.
    
    Parameters:
    
    root - BranchGroup node to be removed.
  - resizePanel
```
public void resizePanel(int panelWidth,
                        int frameHeight)
```
    Resizig the control panel with ViewJFrameVolumeView's frame width and height.
    
    Overrides:
    
    resizePanel in class JPanelRendererBase
    
    Parameters:
    
    panelWidth - panel width
    
    frameHeight - parent frame height.
  - saveCropImage
```
public void saveCropImage()
```
    Save the cropped image.
  - setArbiPlanePickable
```
public void setArbiPlanePickable(boolean _picked)
```
    setGUI setup the flag of the arbitary clipping frame box.
    
    Parameters:
    
    _picked - true picked, false not picked.
  - setASliderEnabled
```
public void setASliderEnabled(boolean flag)
```
    Sets the arbitray clip slider and the labels. state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setCheckBoxA
```
public void setCheckBoxA(boolean isSelected)
```
    Set the slider arbitrary checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxStatic
```
public void setCheckBoxStatic(boolean isSelected)
```
    Set the slider Static checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxStaticInv
```
public void setCheckBoxStaticInv(boolean isSelected)
```
    Set the slider Static inverse checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxX
```
public void setCheckBoxX(boolean isSelected)
```
    Set the slider X checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxXInv
```
public void setCheckBoxXInv(boolean isSelected)
```
    Set the slider X inverse checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxY
```
public void setCheckBoxY(boolean isSelected)
```
    Set the slider Y checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxYInv
```
public void setCheckBoxYInv(boolean isSelected)
```
    Set the slider Y inverse checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxZ
```
public void setCheckBoxZ(boolean isSelected)
```
    Set the slider Z checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setCheckBoxZInv
```
public void setCheckBoxZInv(boolean isSelected)
```
    Set the slider Z inverse checkBox with the passed in value.
    
    Parameters:
    
    isSelected - if true selected, otherwise not selected.
  - setClipSliceAColor
```
public void setClipSliceAColor(java.awt.Color color)
```
    Sets the color of the arbitrary clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceAwithRotate
```
public void setClipSliceAwithRotate(float _axisX,
                                    float _axisY,
                                    float _axisZ,
                                    float _axisAngle)
```
    During mouse recorder diaplay, setup the rotatino axis for both arbiTG and mcArbiTG.
    
    Parameters:
    
    _axisX - rotation axis x value.
    
    _axisY - rotation axis y value.
    
    _axisZ - rotation axis z value.
    
    _axisAngle - rotation axis alpha value.
  - setClipSliceSColor
```
public void setClipSliceSColor(java.awt.Color color)
```
    Sets the color of the static clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceSInvColor
```
public void setClipSliceSInvColor(java.awt.Color color)
```
    Sets the color of the static inverse clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceXColor
```
public void setClipSliceXColor(java.awt.Color color)
```
    Sets the color of the x clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceXInvColor
```
public void setClipSliceXInvColor(java.awt.Color color)
```
    Sets the color of the -x clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceYColor
```
public void setClipSliceYColor(java.awt.Color color)
```
    Sets the color of the y cliping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceYInvColor
```
public void setClipSliceYInvColor(java.awt.Color color)
```
    Sets the color of the -y cliping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceZColor
```
public void setClipSliceZColor(java.awt.Color color)
```
    Sets the color of the z clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setClipSliceZInvColor
```
public void setClipSliceZInvColor(java.awt.Color color)
```
    Sets the color of the -z clipping plane slice frame.
    
    Parameters:
    
    color - Color to set to.
  - setStaticInvSliderEnabled
```
public void setStaticInvSliderEnabled(boolean flag)
```
    Sets the static inverse slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setStaticSliderEnabled
```
public void setStaticSliderEnabled(boolean flag)
```
    Sets the static slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setXSliderEnabled
```
public void setXSliderEnabled(boolean flag)
```
    Sets the x slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setXSliderInvEnabled
```
public void setXSliderInvEnabled(boolean flag)
```
    Sets the x slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setYSliderEnabled
```
public void setYSliderEnabled(boolean flag)
```
    Sets the y slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setYSliderInvEnabled
```
public void setYSliderInvEnabled(boolean flag)
```
    Sets the y slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setZSliderEnabled
```
public void setZSliderEnabled(boolean flag)
```
    Sets the z slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - setZSliderInvEnabled
```
public void setZSliderInvEnabled(boolean flag)
```
    Sets the z slider and the labels beside and beneath it to the state given by flag.
    
    Parameters:
    
    flag - if true enable, otherwise disable.
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent e)
```
    Sets how the image plane should be displayed depending on value of slider.
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Parameters:
    
    e - Event that triggered this function.
  - swapModelClipBG
```
public void swapModelClipBG(boolean flag)
```
    Swap ModelClip Branch group between the 6 clipping plane and the arbitray clipping plane.
    
    Parameters:
    
    flag - true enable the 6 clipping planes, false enable the arbitrary clipping plane.
  - transformChanged
```
public void transformChanged(int type,
                             javax.media.j3d.Transform3D transform)
```
    Needed for this to implement MouseBehaviorCallback.
    
    Specified by:
    
    transformChanged in interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback
    
    Parameters:
    
    type - transformation type.
    
    transform - transformation matrix.
  - undoCrop
```
public void undoCrop()
```
    Undo the crop of the volume.
  - updateClipPlanesEqn
```
public void updateClipPlanesEqn()
```
    Upadate six clipping planes' plane equation.
  - updateClipSlice
```
public void updateClipSlice()
```
    Update clipping planes.
  - updateClipSliceA
```
public void updateClipSliceA()
```
    Sets new frame around arbitrary clip plane slice based on the new position.
  - updateClipSliceAwithRotate
```
public void updateClipSliceAwithRotate(javax.media.j3d.Transform3D transform)
```
    Update arbitrary clip plane's transform.
    
    Parameters:
    
    transform - The current transform with the mouse moves.
  - updateClipSliceStatic
```
public void updateClipSliceStatic()
```
    Sets new frame around clip plane slice -z based on the new position.
  - updateClipSliceStaticInv
```
public void updateClipSliceStaticInv()
```
    Sets new frame around clip plane slice -z based on the new position.
  - updateClipSliceX
```
public void updateClipSliceX()
```
    Sets new frame around clip plane slice x based on the new position.
  - updateClipSliceXInv
```
public void updateClipSliceXInv()
```
    Sets new frame around clip plane slice -x based on the new position.
  - updateClipSliceY
```
public void updateClipSliceY()
```
    Sets new frame around clip plane slice y based on the new position.
  - updateClipSliceYInv
```
public void updateClipSliceYInv()
```
    Sets new frame around clip plane slice -y based on the new position.
  - updateClipSliceZ
```
public void updateClipSliceZ()
```
    Sets new frame around clip plane slice z based on the new position.
  - updateClipSliceZInv
```
public void updateClipSliceZInv()
```
    Sets new frame around clip plane slice -z based on the new position.
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent e)
```
    Accessor that closing the mouse recorder window frame.
    
    Parameters:
    
    e - Window event.
  - backupImage
```
protected void backupImage(ModelImage kImageA,
                           ModelImage kImageB)
```
    Called by the TextureSculptor or VolumeSculptor objects. The function stores the original volume data back to the original values in the m_aiImage_backup data members.
    
    Parameters:
    
    kImageA - image A reference.
    
    kImageB - image B reference.
  - setBoxColor
```
protected void setBoxColor(javax.swing.JButton button,
                           java.awt.Color color)
```
    Calls the appropriate method in the parent frame.
    
    Parameters:
    
    button - color button.
    
    color - color reference.
  - addControlPanel
```
private void addControlPanel(javax.swing.JPanel panel,
                             java.awt.Component c,
                             java.awt.GridBagConstraints gbc,
                             int x,
                             int y,
                             int w,
                             int h)
```
    Helper method that adds components to the control panel for the grid bag layout.
    
    Parameters:
    
    panel - control panel.
    
    c - Component added to the control panel.
    
    gbc - GridBagConstraints of added component.
    
    x - Gridx location
    
    y - Gridy location
    
    w - Gridwidth
    
    h - Gridheight
  - drawSphere
```
private void drawSphere(int index,
                        float x,
                        float y,
                        float z)
```
    Draw the red sphere with the given coordinate.
    
    Parameters:
    
    index - sphere index
    
    x - float x position
    
    y - float y position
    
    z - float z position
  - initSphereBranch
```
private void initSphereBranch()
```
    Initialize the red sphere image scene graph structure.
  - transform
```
private void transform(javax.vecmath.Vector4f vIn)
```
    Transform a point rotation inverse to the volume rotation.
    
    Parameters:
    
    vIn - point position in vector
  - updateVolumeRenderClipPlane
```
private void updateVolumeRenderClipPlane()
```
    Update the volume render's clip plane with all new positions.

Class JPanelClip

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

Fields inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

Methods inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.FocusListener

Methods inherited from interface java.awt.event.ItemListener

Methods inherited from interface java.awt.event.KeyListener

Field Detail

serialVersionUID

enables

enablesArbi

enablesStatic

AclipPlanePts

arbiMouseRotateBehavior

arbiTG

arbiTrans3d

mcArbiTrans3D

arbitrary_SG

aSlice

axisX

axisY

axisZ

axisAngle

behaviorBG

boundingCheckA

boundingCheckStatic

boundingCheckStaticInv

boundingCheckX

boundingCheckY

boundingCheckZ

boundingCheckXInv

boundingCheckYInv

boundingCheckZInv

boxStatic

boxStaticInv

boxA

boxX

boxY

boxZ

boxXInv

boxYInv

boxZInv

clipCount

rotationCount

clipEvents

clipSliceAIndicator

clipSliceA

clipSliceStatic

clipSliceStaticInv

clipSliceX

clipSliceY

clipSliceZ

clipSliceXInv

clipSliceYInv

clipSliceZInv

clipSliderStatic

clipSliderStaticInv

sliderA

clipSliderX

clipSliderY

clipSliderZ

sliderXInv