Package gov.nih.mipav.view.dialogs

Class JDialogFRETEfficiency

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogFRETEfficiency
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ListSelectionListener, RootPaneContainer, WindowConstants
public class JDialogFRETEfficiency extends JDialogScriptableBase implements AlgorithmInterface, ListSelectionListener
Dialog to get user input, then call the algorithm.
See Also:

  • Field Details

    • serialVersionUID

      private static final long serialVersionUID
      Use serialVersionUID for interoperability.
      See Also:

    • acceptorImage

      private ModelImage acceptorImage
      DOCUMENT ME!

    • activeButton

      private JRadioButton activeButton
      DOCUMENT ME!

    • activeIndex

      private int activeIndex
      DOCUMENT ME!

    • AFPintoDFP

      private float AFPintoDFP
      DOCUMENT ME!

    • AFPintoFRET

      private float AFPintoFRET
      DOCUMENT ME!

    • backgroundButton

      private JRadioButton backgroundButton
      DOCUMENT ME!

    • backgroundIndex

      private int backgroundIndex
      DOCUMENT ME!

    • blueButton

      private JRadioButton blueButton
      DOCUMENT ME!

    • chooserButton

      private JButton chooserButton
      DOCUMENT ME!

    • chooserButton2

      private JButton chooserButton2
      DOCUMENT ME!

    • colorGroup

      private ButtonGroup colorGroup
      DOCUMENT ME!

    • colorPanel

      private JPanel colorPanel
      DOCUMENT ME!

    • componentImage

      private ViewJComponentEditImage componentImage
      DOCUMENT ME!

    • createEfficiencyImage

      private boolean createEfficiencyImage
      DOCUMENT ME!

    • createFDivAImage

      private boolean createFDivAImage
      DOCUMENT ME!

    • createFDivDImage

      private boolean createFDivDImage
      DOCUMENT ME!

    • DFPintoAFP

      private float DFPintoAFP
      DOCUMENT ME!

    • DFPintoFRET

      private float DFPintoFRET
      DOCUMENT ME!

    • doColor

      private boolean doColor
      DOCUMENT ME!

    • efficiencyImage

      private ModelImage efficiencyImage
      DOCUMENT ME!

    • effImageCheckBox

      private JCheckBox effImageCheckBox
      DOCUMENT ME!

    • fDivACheckBox

      private JCheckBox fDivACheckBox
      DOCUMENT ME!

    • fDivAImage

      private ModelImage fDivAImage
      DOCUMENT ME!

    • fDivDCheckBox

      private JCheckBox fDivDCheckBox
      DOCUMENT ME!

    • fDivDImage

      private ModelImage fDivDImage
      DOCUMENT ME!

    • feffAlgo

      private AlgorithmFRETEfficiency feffAlgo
      DOCUMENT ME!

    • FRETImage

      private ModelImage FRETImage
      DOCUMENT ME!

    • greenButton

      private JRadioButton greenButton
      DOCUMENT ME!

    • imageList

      private JList imageList
      DOCUMENT ME!

    • imageList2

      private JList imageList2
      DOCUMENT ME!

    • imagePanel

      private JPanel imagePanel
      DOCUMENT ME!

    • imagePanel2

      private JPanel imagePanel2
      DOCUMENT ME!

    • model

      private DefaultListModel model
      DOCUMENT ME!

    • model2

      private DefaultListModel model2
      DOCUMENT ME!

    • nBoundingVOIs

      private int nBoundingVOIs
      DOCUMENT ME!

    • paramPanel

      private JPanel paramPanel
      DOCUMENT ME!

    • redButton

      private JRadioButton redButton
      DOCUMENT ME!

    • removeButton

      private JButton removeButton
      DOCUMENT ME!

    • removeButton2

      private JButton removeButton2
      DOCUMENT ME!

    • srcImage

      private ModelImage srcImage
      The source image must be the image taken with the donor fluorescent peak filter.

    • textAFPintoDFP

      private JTextField textAFPintoDFP
      DOCUMENT ME!

    • textAFPintoFRET

      private JTextField textAFPintoFRET
      DOCUMENT ME!

    • textDFPintoAFP

      private JTextField textDFPintoAFP
      DOCUMENT ME!

    • textDFPintoFRET

      private JTextField textDFPintoFRET
      DOCUMENT ME!

    • useBlue

      private boolean useBlue
      DOCUMENT ME!

    • useGreen

      private boolean useGreen
      DOCUMENT ME!

    • useRed

      private boolean useRed
      DOCUMENT ME!

    • userInterface

      private ViewUserInterface userInterface
      DOCUMENT ME!

    • VOIGroup

      private ButtonGroup VOIGroup
      DOCUMENT ME!

    • VOIs

      private ViewVOIVector VOIs
      DOCUMENT ME!

  • Constructor Details

    • JDialogFRETEfficiency

      public JDialogFRETEfficiency()
      Empty constructor needed for dynamic instantiation (used during scripting).

    • JDialogFRETEfficiency

      public JDialogFRETEfficiency(ModelImage im)
      Used primarily for the script to store variables and run the algorithm. No actual dialog will appear but the set up info and result image will be stored here.
      Parameters:
      im - Source image.

    • JDialogFRETEfficiency

      public JDialogFRETEfficiency(Frame theParentFrame, ModelImage im)
      Creates a new JDialogFRETEfficiency object.
      Parameters:
      theParentFrame - parent frame
      im - source image

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - Event that triggers function.

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • setAFPintoDFP

      public void setAFPintoDFP(float AFPintoDFP)
      DOCUMENT ME!
      Parameters:
      AFPintoDFP - DOCUMENT ME!

    • setAFPintoFRET

      public void setAFPintoFRET(float AFPintoFRET)
      DOCUMENT ME!
      Parameters:
      AFPintoFRET - DOCUMENT ME!

    • setBlue

      public void setBlue(boolean useBlue)
      DOCUMENT ME!
      Parameters:
      useBlue - DOCUMENT ME!

    • setCreateEfficiencyImage

      public void setCreateEfficiencyImage(boolean createEfficiencyImage)
      DOCUMENT ME!
      Parameters:
      createEfficiencyImage - DOCUMENT ME!

    • setCreateFDivAImage

      public void setCreateFDivAImage(boolean createFDivAImage)
      DOCUMENT ME!
      Parameters:
      createFDivAImage - DOCUMENT ME!

    • setCreateFDivDImage

      public void setCreateFDivDImage(boolean createFDivDImage)
      DOCUMENT ME!
      Parameters:
      createFDivDImage - DOCUMENT ME!

    • setDFPintoAFP

      public void setDFPintoAFP(float DFPintoAFP)
      DOCUMENT ME!
      Parameters:
      DFPintoAFP - DOCUMENT ME!

    • setDFPintoFRET

      public void setDFPintoFRET(float DFPintoFRET)
      DOCUMENT ME!
      Parameters:
      DFPintoFRET - DOCUMENT ME!

    • setGreen

      public void setGreen(boolean useGreen)
      DOCUMENT ME!
      Parameters:
      useGreen - DOCUMENT ME!

    • setRed

      public void setRed(boolean useRed)
      DOCUMENT ME!
      Parameters:
      useRed - DOCUMENT ME!

    • setSourceImage

      public void setSourceImage(ModelImage image)
      Accessor that sets the source image.
      Parameters:
      image - new source image.

    • valueChanged

      public void valueChanged(ListSelectionEvent evt)
      Sets the remove index based on the selected index in the list.
      Specified by:
      valueChanged in interface ListSelectionListener
      Parameters:
      evt - Event that caused this method to fire.

    • callAlgorithm

      protected void callAlgorithm()
      Once all the necessary variables are set, call AlgorithmFRETEfficiency.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • checkImage

      private boolean checkImage(ModelImage testImage)
      Checks the color and dimensionality of the new image vs. the original source image. The new image cannot be color unless the source image is color. However, then new image may be black and white when the source image is color. All new images should have the same dimensions as the source.
      Parameters:
      testImage - DOCUMENT ME!
      Returns:
      Flag indicating if the image checks out.

    • init

      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.

    • open

      private ModelImage open()
      Open an image based on the suffix of the file.
      Returns:
      The image.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.