java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogFRETEfficiency

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ListSelectionListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogFRETEfficiency
extends JDialogScriptableBase
implements AlgorithmInterface, javax.swing.event.ListSelectionListener
```
Dialog to get user input, then call the algorithm.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private ModelImage`	`acceptorImage`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`activeButton`	DOCUMENT ME!
`private int`	`activeIndex`	DOCUMENT ME!
`private float`	`AFPintoDFP`	DOCUMENT ME!
`private float`	`AFPintoFRET`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`backgroundButton`	DOCUMENT ME!
`private int`	`backgroundIndex`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`blueButton`	DOCUMENT ME!
`private javax.swing.JButton`	`chooserButton`	DOCUMENT ME!
`private javax.swing.JButton`	`chooserButton2`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`colorGroup`	DOCUMENT ME!
`private javax.swing.JPanel`	`colorPanel`	DOCUMENT ME!
`private ViewJComponentEditImage`	`componentImage`	DOCUMENT ME!
`private boolean`	`createEfficiencyImage`	DOCUMENT ME!
`private boolean`	`createFDivAImage`	DOCUMENT ME!
`private boolean`	`createFDivDImage`	DOCUMENT ME!
`private float`	`DFPintoAFP`	DOCUMENT ME!
`private float`	`DFPintoFRET`	DOCUMENT ME!
`private boolean`	`doColor`	DOCUMENT ME!
`private ModelImage`	`efficiencyImage`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`effImageCheckBox`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`fDivACheckBox`	DOCUMENT ME!
`private ModelImage`	`fDivAImage`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`fDivDCheckBox`	DOCUMENT ME!
`private ModelImage`	`fDivDImage`	DOCUMENT ME!
`private AlgorithmFRETEfficiency`	`feffAlgo`	DOCUMENT ME!
`private ModelImage`	`FRETImage`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`greenButton`	DOCUMENT ME!
`private javax.swing.JList`	`imageList`	DOCUMENT ME!
`private javax.swing.JList`	`imageList2`	DOCUMENT ME!
`private javax.swing.JPanel`	`imagePanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`imagePanel2`	DOCUMENT ME!
`private javax.swing.DefaultListModel`	`model`	DOCUMENT ME!
`private javax.swing.DefaultListModel`	`model2`	DOCUMENT ME!
`private int`	`nBoundingVOIs`	DOCUMENT ME!
`private javax.swing.JPanel`	`paramPanel`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`redButton`	DOCUMENT ME!
`private javax.swing.JButton`	`removeButton`	DOCUMENT ME!
`private javax.swing.JButton`	`removeButton2`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private ModelImage`	`srcImage`	The source image must be the image taken with the donor fluorescent peak filter.
`private javax.swing.JTextField`	`textAFPintoDFP`	DOCUMENT ME!
`private javax.swing.JTextField`	`textAFPintoFRET`	DOCUMENT ME!
`private javax.swing.JTextField`	`textDFPintoAFP`	DOCUMENT ME!
`private javax.swing.JTextField`	`textDFPintoFRET`	DOCUMENT ME!
`private boolean`	`useBlue`	DOCUMENT ME!
`private boolean`	`useGreen`	DOCUMENT ME!
`private boolean`	`useRed`	DOCUMENT ME!
`private ViewUserInterface`	`userInterface`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`VOIGroup`	DOCUMENT ME!
`private ViewVOIVector`	`VOIs`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogFRETEfficiency()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogFRETEfficiency(ModelImage im)`	Used primarily for the script to store variables and run the algorithm.
`JDialogFRETEfficiency(java.awt.Frame theParentFrame, ModelImage im)`	Creates a new JDialogFRETEfficiency object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	Once all the necessary variables are set, call AlgorithmFRETEfficiency.
`private boolean`	`checkImage(ModelImage testImage)`	Checks the color and dimensionality of the new image vs. the original source image.
`private void`	`init()`	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
`private ModelImage`	`open()`	Open an image based on the suffix of the file.
`void`	`setAFPintoDFP(float AFPintoDFP)`	DOCUMENT ME!
`void`	`setAFPintoFRET(float AFPintoFRET)`	DOCUMENT ME!
`void`	`setBlue(boolean useBlue)`	DOCUMENT ME!
`void`	`setCreateEfficiencyImage(boolean createEfficiencyImage)`	DOCUMENT ME!
`void`	`setCreateFDivAImage(boolean createFDivAImage)`	DOCUMENT ME!
`void`	`setCreateFDivDImage(boolean createFDivDImage)`	DOCUMENT ME!
`void`	`setDFPintoAFP(float DFPintoAFP)`	DOCUMENT ME!
`void`	`setDFPintoFRET(float DFPintoFRET)`	DOCUMENT ME!
`void`	`setGreen(boolean useGreen)`	DOCUMENT ME!
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setRed(boolean useRed)`	DOCUMENT ME!
`void`	`setSourceImage(ModelImage image)`	Accessor that sets the source image.
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.
`void`	`valueChanged(javax.swing.event.ListSelectionEvent evt)`	Sets the remove index based on the selected index in the list.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - acceptorImage
```
private ModelImage acceptorImage
```
    DOCUMENT ME!
  - activeButton
```
private javax.swing.JRadioButton activeButton
```
    DOCUMENT ME!
  - activeIndex
```
private int activeIndex
```
    DOCUMENT ME!
  - AFPintoDFP
```
private float AFPintoDFP
```
    DOCUMENT ME!
  - AFPintoFRET
```
private float AFPintoFRET
```
    DOCUMENT ME!
  - backgroundButton
```
private javax.swing.JRadioButton backgroundButton
```
    DOCUMENT ME!
  - backgroundIndex
```
private int backgroundIndex
```
    DOCUMENT ME!
  - blueButton
```
private javax.swing.JRadioButton blueButton
```
    DOCUMENT ME!
  - chooserButton
```
private javax.swing.JButton chooserButton
```
    DOCUMENT ME!
  - chooserButton2
```
private javax.swing.JButton chooserButton2
```
    DOCUMENT ME!
  - colorGroup
```
private javax.swing.ButtonGroup colorGroup
```
    DOCUMENT ME!
  - colorPanel
```
private javax.swing.JPanel colorPanel
```
    DOCUMENT ME!
  - componentImage
```
private ViewJComponentEditImage componentImage
```
    DOCUMENT ME!
  - createEfficiencyImage
```
private boolean createEfficiencyImage
```
    DOCUMENT ME!
  - createFDivAImage
```
private boolean createFDivAImage
```
    DOCUMENT ME!
  - createFDivDImage
```
private boolean createFDivDImage
```
    DOCUMENT ME!
  - DFPintoAFP
```
private float DFPintoAFP
```
    DOCUMENT ME!
  - DFPintoFRET
```
private float DFPintoFRET
```
    DOCUMENT ME!
  - doColor
```
private boolean doColor
```
    DOCUMENT ME!
  - efficiencyImage
```
private ModelImage efficiencyImage
```
    DOCUMENT ME!
  - effImageCheckBox
```
private javax.swing.JCheckBox effImageCheckBox
```
    DOCUMENT ME!
  - fDivACheckBox
```
private javax.swing.JCheckBox fDivACheckBox
```
    DOCUMENT ME!
  - fDivAImage
```
private ModelImage fDivAImage
```
    DOCUMENT ME!
  - fDivDCheckBox
```
private javax.swing.JCheckBox fDivDCheckBox
```
    DOCUMENT ME!
  - fDivDImage
```
private ModelImage fDivDImage
```
    DOCUMENT ME!
  - feffAlgo
```
private AlgorithmFRETEfficiency feffAlgo
```
    DOCUMENT ME!
  - FRETImage
```
private ModelImage FRETImage
```
    DOCUMENT ME!
  - greenButton
```
private javax.swing.JRadioButton greenButton
```
    DOCUMENT ME!
  - imageList
```
private javax.swing.JList imageList
```
    DOCUMENT ME!
  - imageList2
```
private javax.swing.JList imageList2
```
    DOCUMENT ME!
  - imagePanel
```
private javax.swing.JPanel imagePanel
```
    DOCUMENT ME!
  - imagePanel2
```
private javax.swing.JPanel imagePanel2
```
    DOCUMENT ME!
  - model
```
private javax.swing.DefaultListModel model
```
    DOCUMENT ME!
  - model2
```
private javax.swing.DefaultListModel model2
```
    DOCUMENT ME!
  - nBoundingVOIs
```
private int nBoundingVOIs
```
    DOCUMENT ME!
  - paramPanel
```
private javax.swing.JPanel paramPanel
```
    DOCUMENT ME!
  - redButton
```
private javax.swing.JRadioButton redButton
```
    DOCUMENT ME!
  - removeButton
```
private javax.swing.JButton removeButton
```
    DOCUMENT ME!
  - removeButton2
```
private javax.swing.JButton removeButton2
```
    DOCUMENT ME!
  - srcImage
```
private ModelImage srcImage
```
    The source image must be the image taken with the donor fluorescent peak filter.
  - textAFPintoDFP
```
private javax.swing.JTextField textAFPintoDFP
```
    DOCUMENT ME!
  - textAFPintoFRET
```
private javax.swing.JTextField textAFPintoFRET
```
    DOCUMENT ME!
  - textDFPintoAFP
```
private javax.swing.JTextField textDFPintoAFP
```
    DOCUMENT ME!
  - textDFPintoFRET
```
private javax.swing.JTextField textDFPintoFRET
```
    DOCUMENT ME!
  - useBlue
```
private boolean useBlue
```
    DOCUMENT ME!
  - useGreen
```
private boolean useGreen
```
    DOCUMENT ME!
  - useRed
```
private boolean useRed
```
    DOCUMENT ME!
  - userInterface
```
private ViewUserInterface userInterface
```
    DOCUMENT ME!
  - VOIGroup
```
private javax.swing.ButtonGroup VOIGroup
```
    DOCUMENT ME!
  - VOIs
```
private ViewVOIVector VOIs
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogFRETEfficiency
```
public JDialogFRETEfficiency()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogFRETEfficiency
```
public JDialogFRETEfficiency(ModelImage im)
```
    Used primarily for the script to store variables and run the algorithm. No actual dialog will appear but the set up info and result image will be stored here.
    
    Parameters:
    
    im - Source image.
  - JDialogFRETEfficiency
```
public JDialogFRETEfficiency(java.awt.Frame theParentFrame,
                             ModelImage im)
```
    Creates a new JDialogFRETEfficiency object.
    
    Parameters:
    
    theParentFrame - parent frame
    
    im - source image
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - setAFPintoDFP
```
public void setAFPintoDFP(float AFPintoDFP)
```
    DOCUMENT ME!
    
    Parameters:
    
    AFPintoDFP - DOCUMENT ME!
  - setAFPintoFRET
```
public void setAFPintoFRET(float AFPintoFRET)
```
    DOCUMENT ME!
    
    Parameters:
    
    AFPintoFRET - DOCUMENT ME!
  - setBlue
```
public void setBlue(boolean useBlue)
```
    DOCUMENT ME!
    
    Parameters:
    
    useBlue - DOCUMENT ME!
  - setCreateEfficiencyImage
```
public void setCreateEfficiencyImage(boolean createEfficiencyImage)
```
    DOCUMENT ME!
    
    Parameters:
    
    createEfficiencyImage - DOCUMENT ME!
  - setCreateFDivAImage
```
public void setCreateFDivAImage(boolean createFDivAImage)
```
    DOCUMENT ME!
    
    Parameters:
    
    createFDivAImage - DOCUMENT ME!
  - setCreateFDivDImage
```
public void setCreateFDivDImage(boolean createFDivDImage)
```
    DOCUMENT ME!
    
    Parameters:
    
    createFDivDImage - DOCUMENT ME!
  - setDFPintoAFP
```
public void setDFPintoAFP(float DFPintoAFP)
```
    DOCUMENT ME!
    
    Parameters:
    
    DFPintoAFP - DOCUMENT ME!
  - setDFPintoFRET
```
public void setDFPintoFRET(float DFPintoFRET)
```
    DOCUMENT ME!
    
    Parameters:
    
    DFPintoFRET - DOCUMENT ME!
  - setGreen
```
public void setGreen(boolean useGreen)
```
    DOCUMENT ME!
    
    Parameters:
    
    useGreen - DOCUMENT ME!
  - setRed
```
public void setRed(boolean useRed)
```
    DOCUMENT ME!
    
    Parameters:
    
    useRed - DOCUMENT ME!
  - setSourceImage
```
public void setSourceImage(ModelImage image)
```
    Accessor that sets the source image.
    
    Parameters:
    
    image - new source image.
  - valueChanged
```
public void valueChanged(javax.swing.event.ListSelectionEvent evt)
```
    Sets the remove index based on the selected index in the list.
    
    Specified by:
    
    valueChanged in interface javax.swing.event.ListSelectionListener
    
    Parameters:
    
    evt - Event that caused this method to fire.
  - callAlgorithm
```
protected void callAlgorithm()
```
    Once all the necessary variables are set, call AlgorithmFRETEfficiency.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - checkImage
```
private boolean checkImage(ModelImage testImage)
```
    Checks the color and dimensionality of the new image vs. the original source image. The new image cannot be color unless the source image is color. However, then new image may be black and white when the source image is color. All new images should have the same dimensions as the source.
    
    Parameters:
    
    testImage - DOCUMENT ME!
    
    Returns:
    
    Flag indicating if the image checks out.
  - init
```
private void init()
```
    Sets up the GUI (panels, buttons, etc) and displays it on the screen.
  - open
```
private ModelImage open()
```
    Open an image based on the suffix of the file.
    
    Returns:
    
    The image.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.

Class JDialogFRETEfficiency

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

acceptorImage

activeButton

activeIndex

AFPintoDFP

AFPintoFRET

backgroundButton

backgroundIndex

blueButton

chooserButton

chooserButton2

colorGroup

colorPanel

componentImage

createEfficiencyImage

createFDivAImage

createFDivDImage

DFPintoAFP

DFPintoFRET

doColor

efficiencyImage

effImageCheckBox

fDivACheckBox

fDivAImage

fDivDCheckBox

fDivDImage

feffAlgo

FRETImage

greenButton

imageList

imageList2

imagePanel

imagePanel2

model

model2

nBoundingVOIs

paramPanel

redButton

removeButton

removeButton2

srcImage

textAFPintoDFP

textAFPintoFRET

textDFPintoAFP

textDFPintoFRET

useBlue

useGreen

useRed

userInterface

VOIGroup

VOIs

Constructor Detail

JDialogFRETEfficiency