java.lang.Object

java.util.AbstractCollection<WildMagic.LibFoundation.Mathematics.Vector3f>

java.util.AbstractList<WildMagic.LibFoundation.Mathematics.Vector3f>

java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>

gov.nih.mipav.model.structures.VOIBase

gov.nih.mipav.model.structures.VOIPoint

All Implemented Interfaces:: Serializable, Cloneable, Iterable<WildMagic.LibFoundation.Mathematics.Vector3f>, Collection<WildMagic.LibFoundation.Mathematics.Vector3f>, List<WildMagic.LibFoundation.Mathematics.Vector3f>, RandomAccess, SequencedCollection<WildMagic.LibFoundation.Mathematics.Vector3f>

public class VOIPoint extends VOIBase

Class for a point VOI, a simple extension of CurveBase.

Version:

1.0 Feb. 10, 1999

Author:

Matthew J. McAuliffe

See Also:

Field Summary

Fields

Modifier and Type

Field

Description

private String

distanceString

Distance between segments shown only for active point in polyline_slices

private boolean

firstSlicePoint

True if this point is the 1st point in a slice/frame of Polyline_Slice

private boolean

isActivePoint

True only for the active point of a polyline_slice structure (display's coordinates)

private int

m_iID

ID if this VOIPoint is contained in a PolyLineSlice object.

private TransMatrix

m_kRotation

private TransMatrix

m_kRotationInverse

private static final long

serialVersionUID

Use serialVersionUID for interoperability.

private String

totalDistanceString

Distance is calculated and passed in by VOI for polyline_slices

Fields inherited from class gov.nih.mipav.model.structures.VOIBase
active, autoLabel, averagePt, cenMassPt, cenMassPtB, cenMassPtG, cenMassPtR, CIRCLE, closed, display, DOWN, fixed, gcPt, label, lastPoint, LEFT, LEFT_MIDDLE, LOWER_LEFT, LOWER_MIDDLE, LOWER_RIGHT, m_akImageMinMax, m_bQuickLUT, m_bReloadPoints, m_bSplit, m_bUpdateAverage, m_bUpdateBounds, m_bUpdateGeometricCenter, m_bUpdateMask, m_bUpdatePlane, m_iAnchorIndex, m_iPlane, m_iVOIType, m_kColor, m_kPositionSum, m_kVolumeVOI, nearBoundPoint, nearPoint, NOT_A_PLANE, NOT_A_POINT, numPixels, process, RIGHT, RIGHT_MIDDLE, SQUARE, UNKNOWN_SUBTYPE, UP, UPPER_LEFT, UPPER_MIDDLE, UPPER_RIGHT, voiGroup, volumeDisplayRange, XPLANE, YPLANE, ZPLANE

Fields inherited from class java.util.Vector
capacityIncrement, elementCount, elementData

Fields inherited from class java.util.AbstractList
modCount
Constructor Summary

Constructors

Constructor

Description

VOIPoint()

Default constructor

VOIPoint(int iType)

Sets the type.

VOIPoint(int iType, Vector<WildMagic.LibFoundation.Mathematics.Vector3f> kPosition)

Sets the type and position.

VOIPoint(int iType, WildMagic.LibFoundation.Mathematics.Vector3f kPosition)

Sets the type and position.

VOIPoint(VOIPoint kVOI)

Copy Constructor.
Method Summary

Modifier and Type

Method

Description

VOIPoint

clone()

boolean

contains(float iX, float iY)

Returns true if the input iX, iY is contained within this contour.

boolean

contains(float iX, float iY, float iZ)

Returns true if the input iX,iY,iZ is contained within this contour.

String

distanceString()

Returns the distance string.

WildMagic.LibFoundation.Mathematics.Vector3f

exportPoint()

Method to access point VOI coordinate

void

getCoordinates(float[] coord)

This method gets the coordinates of the point

WildMagic.LibFoundation.Mathematics.Vector3f

getGeometricCenter()

Gets the geometric center of the contour.

int

getID()

Returns ID in PolyLineSlice object.

WildMagic.LibFoundation.Mathematics.Vector3f

getPosition()

boolean

isActivePoint()

True if this is the active point in the PolyLineSlice object.

boolean

isFirstSlicePoint()

Returns true if this is the first point in the PolyLineSlice object.

void

locateVOIPoint(int xP, int yP, int zP, int xDim, int yDim, int zDim)

Sets the point at (xP,yP,zP).

void

moveVOIPoint(int xM, int yM, int zM, int xDim, int yDim, int zDim)

Moves the point to the new location.

boolean

nearPoint(int iX, int iY, int iZ)

Returns true if the input position is near one of the points on this contour.

void

setFirstPoint(boolean isFirst, boolean isActPt, String totalDistance, String dist)

Parameters for drawing each point in the PolyLineSlice object.

void

setFirstPoint(boolean isFirst, boolean isActPt, String totalDistance, String dist, int iID)

Parameters for drawing each point in the PolyLineSlice object.

void

setMatrix(TransMatrix kMat)

void

setPlane(int iPlane)

String

totalDistanceString()

Returns the totalDistance string.

Methods inherited from class gov.nih.mipav.model.structures.VOIBase
addElement, addElement, area, areaTwice, calcIntensity, calcIntensity, calcIntensityThreshold, calcRGBIntensity, calcRGBIntensity, calcRGBIntensityThreshold, contain, contains, createVolumeVOI, cycleActivePt, delete, deleteVolumeVOI, display, dispose, distanceToVOI, equals, exportArrays, exportArrays, fillVolume, findPositionAndCurvature, findPositionAndIntensity, findPositionAndIntensity, findVOIIndentations2D, getActivePt, getAllContourPoints, getAnchor, getAverage, getBounds, getBounds, getCenterOfMass, getCenterOfMass, getCenterOfMassB, getCenterOfMassG, getCenterOfMassR, getContourID, getDoGeometricCenterLabel, getGeometricCenterA, getGroup, getImageBoundingBox, getLabel, getLastNumPixels, getLengthPtToPt, getLengthPtToPt, getLengthString, getMaskPositions, getName, getNearBoundPoint, getNearPoint, getNumVoxels, getPlane, getProcess, getSelectedPoint, getSubtype, getTotalLengthString, getType, getVolumeDisplayRange, getVolumeVOI, importArrays, importArrays, importPoints, isActive, isClosed, isFixed, isM_bUpdateBounds, isM_bUpdateGeometricCenter, isQuickLUT, isSplit, nearLine, nearLine, planeFit, reloadPoints, setActive, setAnchor, setClosed, setDoGeometricCenterLabel, setFixed, setGroup, setLabel, setMask, setMaskSlice, setNearBoundPoint, setNearPoint, setProcess, setQuickLUT, setSelectedPoint, setSplit, setSubtype, setVOIIntensities, setVOIIntensities, setVolumeDisplayRange, slice, slice, transform, trimPoints, update, update, update

Methods inherited from class java.util.Vector
add, add, addAll, addAll, addElement, capacity, clear, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, forEach, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, iterator, lastElement, lastIndexOf, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, removeIf, removeRange, replaceAll, retainAll, set, setElementAt, setSize, size, sort, spliterator, subList, toArray, toArray, toString, trimToSize

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection
parallelStream, stream, toArray

Methods inherited from interface java.util.List
addFirst, addLast, getFirst, getLast, removeFirst, removeLast, reversed

Field Details
- serialVersionUID
  
  private static final long serialVersionUID
  
  Use serialVersionUID for interoperability.
  See Also:
  
  Constant Field Values
- firstSlicePoint
  
  private boolean firstSlicePoint
  
  True if this point is the 1st point in a slice/frame of Polyline_Slice
- totalDistanceString
  
  private String totalDistanceString
  
  Distance is calculated and passed in by VOI for polyline_slices
- distanceString
  
  private String distanceString
  
  Distance between segments shown only for active point in polyline_slices
- isActivePoint
  
  private boolean isActivePoint
  
  True only for the active point of a polyline_slice structure (display's coordinates)
- m_iID
  
  private int m_iID
  
  ID if this VOIPoint is contained in a PolyLineSlice object.
- m_kRotation
  
  private TransMatrix m_kRotation
- m_kRotationInverse
  
  private TransMatrix m_kRotationInverse
Constructor Details
- VOIPoint
  
  public VOIPoint()
  
  Default constructor
- VOIPoint
  
  public VOIPoint(int iType)
  
  Sets the type. If the input type is VOI.POLYPOINT, this VOIPoint is part of a PolyLineSlice object.
  
  Parameters:
  
  iType -
- VOIPoint
  
  public VOIPoint(int iType, Vector<WildMagic.LibFoundation.Mathematics.Vector3f> kPosition)
  
  Sets the type and position. If the input type is VOI.POLYPOINT, this VOIPoint is part of a PolyLineSlice object.
  
  Parameters:
  
  iType -
  
  kPosition -
- VOIPoint
  
  public VOIPoint(int iType, WildMagic.LibFoundation.Mathematics.Vector3f kPosition)
  
  Sets the type and position. If the input type is VOI.POLYPOINT, this VOIPoint is part of a PolyLineSlice object.
  
  Parameters:
  
  iType -
  
  kPosition -
- VOIPoint
  
  public VOIPoint(VOIPoint kVOI)
  
  Copy Constructor.
  
  Parameters:
  
  kVOI -
Method Details
- clone
  
  public VOIPoint clone()
  
  Specified by:
  
  clone in class VOIBase
- contains
  
  public boolean contains(float iX, float iY)
  
  Returns true if the input iX, iY is contained within this contour. The z-value of the contour is ignored.
  
  Overrides:
  
  contains in class VOIBase
  
  Parameters:
  
  iX -
  
  iY -
  
  Returns:
- contains
  
  public boolean contains(float iX, float iY, float iZ)
  
  Returns true if the input iX,iY,iZ is contained within this contour.
  
  Overrides:
  
  contains in class VOIBase
  
  Parameters:
  
  iX -
  
  iY -
  
  iZ -
  
  Returns:
- distanceString
  
  public String distanceString()
  
  Returns the distance string.
  
  Returns:
- exportPoint
  
  public WildMagic.LibFoundation.Mathematics.Vector3f exportPoint()
  
  Method to access point VOI coordinate
  
  Returns:
  
  3d point
- getCoordinates
  
  public void getCoordinates(float[] coord)
  
  This method gets the coordinates of the point
  
  Parameters:
  
  coord - a float array, in which the first element is the x coordinate and the second element is the y coordinate
- getGeometricCenter
  
  public WildMagic.LibFoundation.Mathematics.Vector3f getGeometricCenter()
  
  Gets the geometric center of the contour.
  
  Overrides:
  
  getGeometricCenter in class VOIBase
  
  Returns:
  
  returns the geometric center
- getID
  
  public int getID()
  
  Returns ID in PolyLineSlice object.
  
  Returns:
- getPosition
  
  public WildMagic.LibFoundation.Mathematics.Vector3f getPosition()
- isActivePoint
  
  public boolean isActivePoint()
  
  True if this is the active point in the PolyLineSlice object.
  
  Returns:
- isFirstSlicePoint
  
  public boolean isFirstSlicePoint()
  
  Returns true if this is the first point in the PolyLineSlice object.
  
  Returns:
- locateVOIPoint
  
  public void locateVOIPoint(int xP, int yP, int zP, int xDim, int yDim, int zDim)
  
  Sets the point at (xP,yP,zP). Bounds checking is performed
  
  Parameters:
  
  xP - x location
  
  yP - y location
  
  zP - z location
  
  xDim - x dimension maximum
  
  yDim - y dimension maximum
  
  zDim - z dimension maximum
- moveVOIPoint
  
  public void moveVOIPoint(int xM, int yM, int zM, int xDim, int yDim, int zDim)
  
  Moves the point to the new location. Bounds checking is performed
  
  Parameters:
  
  xM - amount in pixels to move the line in the x direction
  
  yM - amount in pixels to move the line in the y direction
  
  zM - amount in pixels to move the line in the z direction
  
  xDim - x dimension maximum
  
  yDim - y dimension maximum
  
  zDim - z dimension maximum
- nearPoint
  
  public boolean nearPoint(int iX, int iY, int iZ)
  
  Returns true if the input position is near one of the points on this contour.
  
  Parameters:
  
  iX - input x-position.
  
  iY - input y-position.
  
  iZ - input z-position
  
  Returns:
  
  true if the input position is near one of the contour points.
- setFirstPoint
  
  public void setFirstPoint(boolean isFirst, boolean isActPt, String totalDistance, String dist)
  
  Parameters for drawing each point in the PolyLineSlice object.
  
  Parameters:
  
  isFirst - boolean is this the very first point of the polyline slice structure
  
  isActPt - boolean is this the active point (for drawing as green and showing segment length)
  
  totalDistance - String the total distance of the polyline slice
  
  dist - String the segment (active point to next point) distance of the polyline slice
- setFirstPoint
  
  public void setFirstPoint(boolean isFirst, boolean isActPt, String totalDistance, String dist, int iID)
  
  Parameters for drawing each point in the PolyLineSlice object.
  
  Parameters:
  
  isFirst - boolean is this the very first point of the polyline slice structure
  
  isActPt - boolean is this the active point (for drawing as green and showing segment length)
  
  totalDistance - String the total distance of the polyline slice
  
  dist - String the segment (active point to next point) distance of the polyline slice
- setMatrix
  
  public void setMatrix(TransMatrix kMat)
- setPlane
  
  public void setPlane(int iPlane)
  
  Overrides:
  
  setPlane in class VOIBase
- totalDistanceString
  
  public String totalDistanceString()
  
  Returns the totalDistance string.
  
  Returns:

Class VOIPoint

Field Summary

Fields inherited from class gov.nih.mipav.model.structures.VOIBase

Fields inherited from class java.util.Vector

Fields inherited from class java.util.AbstractList

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.structures.VOIBase

Methods inherited from class java.util.Vector

Methods inherited from class java.lang.Object

Methods inherited from interface java.util.Collection

Methods inherited from interface java.util.List

Field Details

serialVersionUID

firstSlicePoint

totalDistanceString

distanceString

isActivePoint

m_iID

m_kRotation

m_kRotationInverse

Constructor Details

VOIPoint

VOIPoint

VOIPoint

VOIPoint

VOIPoint

Method Details

clone

contains

contains

distanceString

exportPoint

getCoordinates

getGeometricCenter

getID

getPosition

isActivePoint

isFirstSlicePoint

locateVOIPoint

moveVOIPoint

nearPoint

setFirstPoint

setFirstPoint

setMatrix

setPlane

totalDistanceString