Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmDICOMtoAVI

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmDICOMtoAVI

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmDICOMtoAVI
extends AlgorithmBase

Recursively traverses a directory and its subfolders, converting all 3D DICOM files to AVI with MP42 Compression.

Version:

1.0

Author:

Ben Link

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private int	compression	DOCUMENT ME!
private java.lang.String	dirPath	Directory to recursively operate in.
private FileIO	fileIO	DOCUMENT ME!
private java.lang.String	outputPath	Output path to build new tree.
private float	quality	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmDICOMtoAVI(java.lang.String dir, java.lang.String outputDir, int compression)	Default Constructor.

Method Summary

Modifier and Type	Method	Description
private void	addFilesToVector(java.lang.String name, java.util.Vector<java.lang.String> vec)	Recursively adds DICOM filenames and directory paths to a Vector.
void	runAlgorithm()	DOCUMENT ME!
private void	runConversion(java.lang.String fileName)	Opens a dicom image, checks to see if it is 3d, adds margins if the image dimensions are not multiples of 4, and saves the image as an AVI with MP42 compression**note - the directory structure is intact with the only difference being that the name of the top level directory now has "_AVI" appended.
void	setQuality(float q)	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

compression

private int compression

DOCUMENT ME!

dirPath

private java.lang.String dirPath

Directory to recursively operate in.

fileIO

private FileIO fileIO

DOCUMENT ME!

outputPath

private java.lang.String outputPath

Output path to build new tree.

quality

private float quality

DOCUMENT ME!

Constructor Detail

AlgorithmDICOMtoAVI

public AlgorithmDICOMtoAVI(java.lang.String dir,
                           java.lang.String outputDir,
                           int compression)

Default Constructor.

Parameters:

dir - full pathname of directory to traverse

outputDir - DOCUMENT ME!

compression - DOCUMENT ME!

Method Detail

runAlgorithm

public void runAlgorithm()

DOCUMENT ME!

Specified by:

runAlgorithm in class AlgorithmBase

setQuality

public void setQuality(float q)

DOCUMENT ME!

Parameters:

q - DOCUMENT ME!

addFilesToVector

private void addFilesToVector(java.lang.String name,
                              java.util.Vector<java.lang.String> vec)

Recursively adds DICOM filenames and directory paths to a Vector.

Parameters:

name - The name of either file or directory

vec - Vector that holds all files to be processed

runConversion

private void runConversion(java.lang.String fileName)

Opens a dicom image, checks to see if it is 3d, adds margins if the image dimensions are not multiples of 4, and saves the image as an AVI with MP42 compression**note - the directory structure is intact with the only difference being that the name of the top level directory now has "_AVI" appended.

Parameters:

fileName - name of file to convert