java.lang.Object
- gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterface

All Implemented Interfaces:

VOIListener, VOIVectorListener, VOIHandlerInterface, java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.util.EventListener, javax.swing.event.MouseInputListener

Direct Known Subclasses:

VOILatticeManagerInterface
```
public class VOIManagerInterface
extends java.lang.Object
implements java.awt.event.ActionListener, VOIHandlerInterface, VOIListener, VOIVectorListener
```
VOIManagerInterface manages all the VOI user-interaction for classes that display the ModelImage. ViewJFrameImage, ViewJFrameTriImage, ViewJFrameRegistration, ViewJFrameRegistrationTool, and the VolumeTriPlanarInterface class for the GPU-based volume renderer. This class further divides the VOI user-interaction into actions that occur within a single canvas and actions that are shared across canvases. All user-interaction that occurs within a single canvas, for example direct user-manipulation of a single VOI contour, adding points, moving points, etc. are managed by the VOIManager class. The ViewJFrameTriImage has three canvases when displaying a single ModelImage. Each canvas is tied to a separate VOIManager class, which handles all the direct user-manipulation of the VOIs it displays. The VOIManagerInterface class contains the three VOIManagers and handles the communication between the VOIManager and the VOI, the ModelImage containing the VOI, and the class displaying the ModelImage.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

(package private) class VOIManagerInterface.OkColorListener
Pick up the selected color and call method to change the color.

Field Summary

Fields
Modifier and Type	Field	Description
`protected ViewJColorChooser`	`colorChooser`	Reference to the color chooser.
`protected java.awt.Color`	`currentColor`	Restores the VOI color button after QuickLUT.
`protected JDialogVOIStatistics`	`imageStatList`	Statistics dialog VOI->Statistics generator...
`protected javax.swing.event.EventListenerList`	`listenerList`	created to handle VOI updates.
`private WildMagic.LibFoundation.Mathematics.Vector3f[]`	`m_akBounds`	Bounding box for a group of selected VOIs for group-move.
`private boolean`	`m_bDefaultImage`
`private boolean`	`m_bGPURenderer`	Set to true if this VOIManagerInterface is used for the GPU-based Volume Renderer
`private float`	`m_fOpacity`	Opacity for setting the JDialogOpacityControls, used for VOI opacity.
`private int`	`m_iActive`	The index of the current active VOIManager.
`private int`	`m_iMaxUndo`
`private java.util.Vector<VOIBase>`	`m_kActiveList`	List of active VOIBase for a moving several selected VOIs.
`protected VOI`	`m_kCurrentVOIGroup`	The current active VOI
`protected ModelImage`	`m_kImageA`	Reference to imageA
`private java.lang.Object`	`m_kImageARedo`	Single-level undo/redo for image masks, re-do-imageA:
`private java.lang.Object`	`m_kImageAUndo`	Single-level undo/redo for image masks, undo-imageA:
`protected ModelImage`	`m_kImageB`	Reference to imageB
`private java.lang.Object`	`m_kImageBRedo`	Single-level undo/redo for image masks, re-do-imageB:
`private java.lang.Object`	`m_kImageBUndo`	Single-level undo/redo for image masks, undo-imageB:
`protected VOIManagerInterfaceListener`	`m_kParent`	Reference to the parent frame.
`private javax.swing.JToggleButton`	`m_kPointerButton`	The Default pointer button is set from outside this class if the default pointer button is not part of the VOI toolbar, or if the VOI toolbar is not displayed.
`private java.util.Vector<java.lang.String>`	`m_kRedoCommands`	List of re-do commands
`protected java.util.Vector<VOISaveState>`	`m_kRedoList`	Saved VOI states for re-do.
`private ModelImage`	`m_kTempImage`
`private java.util.Vector<java.lang.String>`	`m_kUndoCommands`	List of undo commands
`protected java.util.Vector<VOISaveState>`	`m_kUndoList`	Saved VOI states for undo.
`protected JDialogVOIStats`	`m_kVOIDialog`	VOI Properties dialog -- from the popup menu or drop-down menu.
`private JDialogVOIHausdorffDistance`	`m_kVOIHausdorffDistanceDialog`
`private JDialogVOILogicalOperations`	`m_kVOILogicalOperationsDialog`
`protected java.util.Vector<VOIManager>`	`m_kVOIManagers`	List of VOIManagers, one per canvas displayed.
`private javax.swing.JToolBar`	`m_kVOIToolbar`	Reference to the VOI toolbar.
`protected ViewJPopupVOI`	`popup`	Popup Menu for VOIs (non-point).
`protected ViewJPopupPt`	`popupPt`	Popup Menu for VOIPoints.
`private float`	`presetHue`
`protected VolumeTriPlanarRenderBase`	`renderer`
`protected VOI`	`saveGroup`	Restores the current VOI after QuickLUT.
`private ViewToolBarBuilder`	`toolbarBuilder`	The toolbar builder that constructs the VOI toolbar -- it stores the VOI color button.
`protected javax.swing.JMenu`	`voiMenu`
`protected ViewMenuBuilder`	`voiMenuBuilder`
`private int`	`voiUID`	VOI ID used to set the VOI color button on a call to newVOI()

Constructor Summary

Constructors
Constructor	Description
`VOIManagerInterface(VOIManagerInterfaceListener kParent, ModelImage kImageA, ModelImage kImageB, int iNViews, boolean bGPU, javax.swing.ButtonGroup kVOIGroup)`	Creates a VOIManagerInterface object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`
`void`	`addedCurve(VOIEvent added)`	handles an VOIEvent as a selection change.
`void`	`addedVOI(VOIVectorEvent newVOIselection)`	handles an VOIEvent as a selection change.
`private void`	`addVOI(ModelImage kImage, VOIBase kNew, boolean bQuickLUT, boolean bUpdate, boolean isFinished)`
`void`	`addVOI(VOIBase kNew, boolean bQuickLUT, boolean bUpdate, boolean isFinished)`	Add a new VOIBase.
`VOIManager`	`addVOIManager(ModelImage kImageA, ModelImage kImageB, java.awt.Component kComponent, ScreenCoordinateListener kContext, int iOrientation)`
`void`	`addVOIUpdateListener(UpdateVOISelectionListener listener)`	Adds a UpdateVOISelectionListener.
`private void`	`advanceVOIUID()`	Increments the VOI uid for internal tracking, used during both creation and loading of a new VOI
`void`	`algorithmPerformed()`
`private void`	`changeVOIOrder(boolean doContour, int direction)`
`private boolean`	`checkForActiveVOIs()`
`private void`	`clearList(java.util.Vector<VOISaveState> list, int limit)`
`void`	`clearUndoRedo()`
`void`	`colorChanged(java.awt.Color c)`
`private int`	`copy()`
`private void`	`createMask(ModelImage kActive, boolean bInside)`
`private void`	`createMask(java.lang.String command)`
`private int`	`cut()`
`private void`	`deleteActiveVOI()`
`private void`	`deleteAllVOI()`
`void`	`deleteSelectedVOI(boolean contoursOnly)`	Delete the selected VOI.
`void`	`deleteVOI(VOIBase kOld, boolean update)`	Deletes the input VOIBase from the VOI.
`private void`	`deleteVOIActivePt()`
`void`	`deleteVOIs()`	Delete all VOIs.
`void`	`disposeLocal(boolean flag)`	Dispose of the implementing class.
`void`	`doVOI(java.lang.String kCommand)`	Performs the VOI Action Command.
`private void`	`evolveBoundary2D(java.lang.String command)`
`private void`	`exportSelectedVOIs()`
`java.lang.String`	`extractNumber(java.lang.String str)`
`private void`	`findCompatibleType(ModelImage kImage, VOIBase kNew, boolean isFinished)`
`void`	`fireVOISelectionChange(VOI voi)`	Communicates a selection change to all UpdateVOISelectionListeners.
`void`	`fireVOISelectionChange(VOI voi, VOIBase curve)`	Communicates a selection change to all UpdateVOISelectionListeners.
`ModelImage`	`getActiveImage()`	Returns the current active image.
`private int`	`getActiveVOICount()`
`float`	`getBufferFloat(byte[] buffer, int index, boolean bigEndian)`	Converts byte data to float data.
`int`	`getBufferInt(byte[] buffer, int index, boolean bigEndian)`	Converts byte data to int data.
`short`	`getBufferShort(byte[] buffer, int index, boolean bigEndian)`	Converts byte data to short data.
`short`	`getByte(byte[] buffer, int index)`
`java.awt.Component`	`getComponentImage()`	Returns the Component displaying the current active image.
`private javax.swing.JFrame`	`getFrame()`
`javax.swing.JToggleButton`	`getPointerButton()`	Returns the pointer button, used by VOIManager to determine if the pointer button is active.
`private int`	`getSegment(float[] array, float[] seg, int index)`
`private int`	`getSlice()`
`javax.swing.JToolBar`	`getToolBar()`	Returns the VOIToolbar.
`int`	`getVOI_ID()`
`VOIManager`	`getVOIManager(int i)`	Returns the VOIManager at the given position.
`int`	`getVOIManagerNum()`	Returns the number of VOIManagers controlled by this VOIHandler.
`protected VOISaveState`	`getVOIState()`
`void`	`graph25VOI_CalcInten(boolean totalIntensity, boolean useThreshold, float threshold)`	Generates and displays a 1D graph of the average or total intensity of 2.5 VOI of 2.5D image (3D).
`private void`	`graphPointVOI(VOI v, VOIPoint voiPt, int j, boolean useFrameRefTime)`
`private void`	`graphVOI()`
`private void`	`graphVOICurvature(boolean smooth)`
`private void`	`importVOI()`
`private void`	`indentationVOIs2D()`
`protected void`	`initVOIManagers(int iNViews)`
`private void`	`interpolateVOIs()`
`private boolean`	`isDrawCommand(java.lang.String kCommand)`
`boolean`	`isNewVoiNeeded(int voiType)`
`private void`	`levelSet3D()`
`protected void`	`loadAllImageJVOIsFrom(java.lang.String voiDir, boolean quietMode, VOIVector resultVector, boolean registerVOIs)`	This method loads all ImageJ VOIs to the active image from a given directory.
`private void`	`loadAllVOIs(boolean quietMode)`	This method loads all VOIs to the active image from the default VOI directory for that image.
`private void`	`loadAllVOIsFrom(java.lang.String voiDir, boolean quietMode)`	This method loads all VOIs to the active image from a given directory.
`protected void`	`loadAllVOIsFrom(java.lang.String voiDir, boolean quietMode, VOIVector resultVector, boolean registerVOIs)`	This method loads all VOIs to the active image from a given directory.
`boolean`	`make3DVOI(boolean bIntersection, ModelImage kVolume)`	Creates a 3D Surface out of the VOIs.
`private boolean`	`make3DVOI(boolean bIntersection, ModelImage kSrc, ModelImage kVolume, java.util.BitSet kMask, VOIManager kManager, int iValue)`
`private void`	`makeShapeFromArray(float[] array, java.util.Vector<java.util.Vector<java.lang.Integer>> xVector, java.util.Vector<java.util.Vector<java.lang.Integer>> yVector)`
`private boolean`	`matches(int iType1, int iType2, boolean isFinished)`
`void`	`mouseClicked(java.awt.event.MouseEvent event)`
`void`	`mouseDragged(java.awt.event.MouseEvent arg0)`
`void`	`mouseEntered(java.awt.event.MouseEvent e)`
`void`	`mouseExited(java.awt.event.MouseEvent e)`
`void`	`mouseMoved(java.awt.event.MouseEvent arg0)`
`void`	`mousePressed(java.awt.event.MouseEvent e)`
`void`	`mouseReleased(java.awt.event.MouseEvent e)`
`void`	`moveVOI(VOIManager kActive, WildMagic.LibFoundation.Mathematics.Vector3f kDiff, int iPlane, boolean bFirstMove, boolean bUseMouse)`	Called from the VOIManager class when multiple contours are selected and moved as a group.
`void`	`moveVOI(java.lang.String kCommand, float fScale)`
`void`	`newVOI(boolean bPropagate, boolean bSplit)`	Initiate a new VOI.
`void`	`newVOI(float presetHue)`	Initiate a new VOI.
`private boolean`	`openOtherOrientationVOI(boolean quietMode)`
`private boolean`	`openPaint(boolean quietMode)`
`private boolean`	`openVOI(boolean quietMode, boolean doLabels)`	This method opens an existing VOI.
`private void`	`paintToVOI()`
`private void`	`paste()`
`private void`	`pasteAll()`
`private void`	`pasteFromViewUserInterface()`
`void`	`pasteVOI(VOIBase kNew)`	Paste the input VOIBase.
`private void`	`propagate(int dir)`
`boolean`	`propVOI(int direction, boolean active)`	Propagates the selected VOI in a given direction.
`boolean`	`propVOIAll()`	Propagates the selected VOI to all slices.
`void`	`quickLUT(VOIBase kLUT)`	Called from the VOIManager class when a user has drawn the QuickLUT rectangle.
`private void`	`quickLUT(WildMagic.LibFoundation.Mathematics.Vector3f[] akMinMax, ModelImage image, ModelLUT LUT)`	method that performs the quick LUT operation
`private void`	`quickRGB(WildMagic.LibFoundation.Mathematics.Vector3f[] akMinMax, ModelImage image, ModelRGB RGB)`	DOCUMENT ME!
`private void`	`readCSV(java.lang.String fileName, ModelImage image)`
`private void`	`readFreesurferBinaryPatch(java.lang.String fileName, ModelImage image)`
`private void`	`readImageJ(java.lang.String pathName, java.lang.String fileName, ModelImage image)`
`private void`	`redoImage()`
`private void`	`redoVOI()`
`protected void`	`redoVOIs()`
`void`	`removedCurve(VOIEvent removed)`	handles to the VOI being removed from the Vector.
`void`	`removedVOI(VOIVectorEvent removed)`	handles to the VOI being removed from the Vector.
`void`	`removeVOIManager(VOIManager kVOIManager)`
`void`	`removeVOIUpdateListener(UpdateVOISelectionListener listener)`	Removes the UpdateVOISelectionListener from the list.
`void`	`resetLivewire()`	Resets the current livewire VOI.
`private void`	`saveAllVOIs()`	This method saves all VOIs for the active image to the default VOI directory for that image.
`private void`	`saveAllVOIsTo(java.lang.String voiDir)`	This method saves all VOIs for the active image to a given directory.
`private void`	`saveImage(java.lang.String kCommand)`	Save the dicom matrix header info.
`private void`	`saveLabels(boolean saveAll)`
`private void`	`savePaint()`
`private void`	`savePaintAs()`	This method allows the user to choose how to save the paint bitmap.
`private void`	`saveVOI(boolean saveAllContours)`	This method saves a selected VOI
`private void`	`saveVOIAs(boolean saveAllContours)`	This method allows the user to choose how to save the VOI.
`private void`	`saveVOIIntensities()`	Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex.
`private void`	`saveVOIIntensitiesTo(java.lang.String voiIntensitiesPath)`	Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex.
`void`	`saveVOIs(java.lang.String kCommand)`	Save the current VOIState to the undo/re-do list.
`void`	`selectAllVOIs(boolean bActive)`	Selects all VOIs.
`void`	`selectedVOI(VOIEvent selection)`	handles the VOI being selected. -- a state-change.
`void`	`setActive(VOIManager kManager, ModelImage kActiveImage)`	Called from the VOIManager.
`void`	`setButtonColor(javax.swing.JButton _button, java.awt.Color _color)`	Set the color of the button.
`void`	`setCenter(WildMagic.LibFoundation.Mathematics.Vector3f center)`	Sets the current displayed slice for 3D images.
`void`	`setCenter(WildMagic.LibFoundation.Mathematics.Vector3f center, boolean bParent)`	Sets the current displayed slice for 3D images.
`private void`	`setCurrentColor()`
`void`	`setCursor(java.awt.Cursor kCursor)`	Called from VOIManager to change the mouse cursor.
`void`	`setDefaultCursor()`	Called from VOIManager to set the default mouse cursor.
`void`	`setEnabled(boolean flag)`	Currently not used.
`private void`	`setGraphVisible()`
`void`	`setOpacity(float fVal)`	Called from JDialogOpacityControls.
`private void`	`setPAAIGraphVisible()`
`void`	`setPointerButton(javax.swing.JToggleButton button)`	Called when the Default Pointer Button is not part of the default VOI Toolbar.
`void`	`setPresetHue(float presetHue)`	Sets the hue that will be used to draw the new VOI.
`void`	`setRenderer(VolumeTriPlanarRenderBase renderer)`
`void`	`setSelectedVOI(VOI kSelected, boolean bSelectAll, boolean bUnSelectVOI)`	Called from the VOIManager when a new VOI is selected by the mouse.
`void`	`setVOI_IDs(int ID, int UID)`	This function is deprecated.
`protected void`	`setVOIState(VOISaveState kVOIState)`
`void`	`setVOITools(javax.swing.JMenu voiMenu, ViewMenuBuilder voiMenuBuilder)`
`void`	`showColorDialog()`	Opens the color dialog for changing the selected VOI color.
`void`	`showCurvatureInfo(VOIBase kVOI, int m_iPlane, boolean showGraph, boolean smoothCurvature)`	Called from the VOIManager.
`void`	`showIntensityInfo(VOIBase kVOI, int m_iPlane, boolean showGraph)`	Called from the VOIManager.
`protected void`	`showStatisticsCalculator()`	Opens a JDialogStatistics to allow computation ofROI statistics.
`protected void`	`showVOIProperties()`
`private void`	`undoImage()`
`private void`	`undoVOI()`
`protected void`	`undoVOIs()`
`void`	`updateDisplay()`	Called from VOIManager.
`void`	`updateGraph(VOIBase kVOI, int m_iPlane)`	Called from the VOIManager when the VOIBase that is currently being graphed has changed.
`void`	`vectorSelected(VOIVectorEvent selection)`	handles the VOI being selected.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - m_kParent
```
protected VOIManagerInterfaceListener m_kParent
```
    Reference to the parent frame.
  - m_kImageA
```
protected ModelImage m_kImageA
```
    Reference to imageA
  - m_kImageB
```
protected ModelImage m_kImageB
```
    Reference to imageB
  - toolbarBuilder
```
private ViewToolBarBuilder toolbarBuilder
```
    The toolbar builder that constructs the VOI toolbar -- it stores the VOI color button.
  - m_kVOIToolbar
```
private javax.swing.JToolBar m_kVOIToolbar
```
    Reference to the VOI toolbar.
  - colorChooser
```
protected ViewJColorChooser colorChooser
```
    Reference to the color chooser.
  - m_kVOIManagers
```
protected java.util.Vector<VOIManager> m_kVOIManagers
```
    List of VOIManagers, one per canvas displayed.
  - m_iActive
```
private int m_iActive
```
    The index of the current active VOIManager.
  - voiUID
```
private int voiUID
```
    VOI ID used to set the VOI color button on a call to newVOI()
  - m_kCurrentVOIGroup
```
protected VOI m_kCurrentVOIGroup
```
    The current active VOI
  - m_kUndoCommands
```
private java.util.Vector<java.lang.String> m_kUndoCommands
```
    List of undo commands
  - m_kRedoCommands
```
private java.util.Vector<java.lang.String> m_kRedoCommands
```
    List of re-do commands
  - m_fOpacity
```
private float m_fOpacity
```
    Opacity for setting the JDialogOpacityControls, used for VOI opacity.
  - m_bGPURenderer
```
private boolean m_bGPURenderer
```
    Set to true if this VOIManagerInterface is used for the GPU-based Volume Renderer
  - renderer
```
protected VolumeTriPlanarRenderBase renderer
```
  - m_kVOIDialog
```
protected JDialogVOIStats m_kVOIDialog
```
    VOI Properties dialog -- from the popup menu or drop-down menu.
  - m_kVOILogicalOperationsDialog
```
private JDialogVOILogicalOperations m_kVOILogicalOperationsDialog
```
  - m_kVOIHausdorffDistanceDialog
```
private JDialogVOIHausdorffDistance m_kVOIHausdorffDistanceDialog
```
  - m_iMaxUndo
```
private int m_iMaxUndo
```
  - m_kUndoList
```
protected java.util.Vector<VOISaveState> m_kUndoList
```
    Saved VOI states for undo.
  - m_kRedoList
```
protected java.util.Vector<VOISaveState> m_kRedoList
```
    Saved VOI states for re-do.
  - m_kImageAUndo
```
private java.lang.Object m_kImageAUndo
```
    Single-level undo/redo for image masks, undo-imageA:
  - m_kImageARedo
```
private java.lang.Object m_kImageARedo
```
    Single-level undo/redo for image masks, re-do-imageA:
  - m_kImageBUndo
```
private java.lang.Object m_kImageBUndo
```
    Single-level undo/redo for image masks, undo-imageB:
  - m_kImageBRedo
```
private java.lang.Object m_kImageBRedo
```
    Single-level undo/redo for image masks, re-do-imageB:
  - m_akBounds
```
private WildMagic.LibFoundation.Mathematics.Vector3f[] m_akBounds
```
    Bounding box for a group of selected VOIs for group-move.
  - listenerList
```
protected javax.swing.event.EventListenerList listenerList
```
    created to handle VOI updates. Must fireVOIUpdate(...) to get listeners to handle the update. Perhaps better location for the VOIupdate is in ViewJCompoenentEditImage, but this listenerlist will handle listeners of more than one type.
  - popup
```
protected ViewJPopupVOI popup
```
    Popup Menu for VOIs (non-point).
  - popupPt
```
protected ViewJPopupPt popupPt
```
    Popup Menu for VOIPoints.
  - currentColor
```
protected java.awt.Color currentColor
```
    Restores the VOI color button after QuickLUT.
  - saveGroup
```
protected VOI saveGroup
```
    Restores the current VOI after QuickLUT.
  - m_kActiveList
```
private java.util.Vector<VOIBase> m_kActiveList
```
    List of active VOIBase for a moving several selected VOIs.
  - m_kPointerButton
```
private javax.swing.JToggleButton m_kPointerButton
```
    The Default pointer button is set from outside this class if the default pointer button is not part of the VOI toolbar, or if the VOI toolbar is not displayed. The VOIManagers query the default pointer button to determine if VOI interaction is enabled.
  - imageStatList
```
protected JDialogVOIStatistics imageStatList
```
    Statistics dialog VOI->Statistics generator...
  - presetHue
```
private float presetHue
```
  - m_bDefaultImage
```
private boolean m_bDefaultImage
```
  - m_kTempImage
```
private ModelImage m_kTempImage
```
  - voiMenu
```
protected javax.swing.JMenu voiMenu
```
  - voiMenuBuilder
```
protected ViewMenuBuilder voiMenuBuilder
```
- Constructor Detail
  - VOIManagerInterface
```
public VOIManagerInterface(VOIManagerInterfaceListener kParent,
                           ModelImage kImageA,
                           ModelImage kImageB,
                           int iNViews,
                           boolean bGPU,
                           javax.swing.ButtonGroup kVOIGroup)
```
    Creates a VOIManagerInterface object.
    
    Parameters:
    
    kParent - the parent frame, must be a VOIManagerInterfaceListener
    
    kImageA - imageA
    
    kImageB - imageB
    
    iNViews - number of views displayed in the parent.
    
    bGPU - set to true if this VOIManagerInterface is part of the GPU-based Volume Renderer.
    
    kVOIGroup - for ViewJFrameImage and ViewJFrameTriImage, so the VOI Toolbar can be part of a larger button group.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
  - addedCurve
```
public void addedCurve(VOIEvent added)
```
    Description copied from interface: VOIListener
    
    handles an VOIEvent as a selection change.
    
    Specified by:
    
    addedCurve in interface VOIListener
    
    Parameters:
    
    added - DOCUMENT ME!
  - addedVOI
```
public void addedVOI(VOIVectorEvent newVOIselection)
```
    Description copied from interface: VOIVectorListener
    
    handles an VOIEvent as a selection change.
    
    Specified by:
    
    addedVOI in interface VOIVectorListener
    
    Parameters:
    
    newVOIselection - DOCUMENT ME!
  - addVOI
```
public void addVOI(VOIBase kNew,
                   boolean bQuickLUT,
                   boolean bUpdate,
                   boolean isFinished)
```
    Add a new VOIBase. This function should only be called from VOIManager when a new VOIBase is created with the mouse.
    
    Parameters:
    
    kNew - the new VOIBase to add.
    
    bQuickLUT - true if this is a QuickLUT VOI.
    
    bUpdate - when true call updateDisplay() after the VOIBase is added
    
    isFinished - true if this VOIBase is complete, used for open contours.
  - addVOIManager
```
public VOIManager addVOIManager(ModelImage kImageA,
                                ModelImage kImageB,
                                java.awt.Component kComponent,
                                ScreenCoordinateListener kContext,
                                int iOrientation)
```
  - addVOIUpdateListener
```
public void addVOIUpdateListener(UpdateVOISelectionListener listener)
```
    Adds a UpdateVOISelectionListener.
    
    Specified by:
    
    addVOIUpdateListener in interface VOIHandlerInterface
    
    Parameters:
    
    listener - will receive VOI selection events.
  - algorithmPerformed
```
public void algorithmPerformed()
```
  - colorChanged
```
public void colorChanged(java.awt.Color c)
```
    Specified by:
    
    colorChanged in interface VOIListener
  - deleteSelectedVOI
```
public void deleteSelectedVOI(boolean contoursOnly)
```
    Description copied from interface: VOIHandlerInterface
    
    Delete the selected VOI. This function is deprecated, replace with actionPerformed() using CustomUIBuilder.PARAM_VOI_DELETE
    
    Specified by:
    
    deleteSelectedVOI in interface VOIHandlerInterface
    
    Parameters:
    
    contoursOnly - when true only delete the selected contours in the VOI, do not delete the VOI.
  - deleteVOI
```
public void deleteVOI(VOIBase kOld,
                      boolean update)
```
    Deletes the input VOIBase from the VOI. If it is the only VOIBase in the VOI, that VOI is removed from the ModelImage. This function is called from VOIManager.
    
    Parameters:
    
    kOld - the VOIBase to remove.
  - deleteVOIs
```
public void deleteVOIs()
```
    Description copied from interface: VOIHandlerInterface
    
    Delete all VOIs.
    
    Specified by:
    
    deleteVOIs in interface VOIHandlerInterface
  - disposeLocal
```
public void disposeLocal(boolean flag)
```
    Description copied from interface: VOIHandlerInterface
    
    Dispose of the implementing class.
    
    Specified by:
    
    disposeLocal in interface VOIHandlerInterface
    
    Parameters:
    
    flag - not used.
  - doVOI
```
public void doVOI(java.lang.String kCommand)
```
    Performs the VOI Action Command. See CustomUIBuilder. This function should be replaced withe actionPerformed(ActionEvent).
    
    Parameters:
    
    kCommand - VOI action command.
  - fireVOISelectionChange
```
public void fireVOISelectionChange(VOI voi)
```
    Description copied from interface: VOIHandlerInterface
    
    Communicates a selection change to all UpdateVOISelectionListeners.
    
    Specified by:
    
    fireVOISelectionChange in interface VOIHandlerInterface
    
    Parameters:
    
    voi - the modified VOI.
  - fireVOISelectionChange
```
public void fireVOISelectionChange(VOI voi,
                                   VOIBase curve)
```
    Description copied from interface: VOIHandlerInterface
    
    Communicates a selection change to all UpdateVOISelectionListeners.
    
    Specified by:
    
    fireVOISelectionChange in interface VOIHandlerInterface
    
    Parameters:
    
    voi - modified VOI.
    
    curve - modified VOIBase.
  - getActiveImage
```
public ModelImage getActiveImage()
```
    Description copied from interface: VOIHandlerInterface
    
    Returns the current active image.
    
    Specified by:
    
    getActiveImage in interface VOIHandlerInterface
    
    Returns:
    
    current active image.
  - getComponentImage
```
public java.awt.Component getComponentImage()
```
    Description copied from interface: VOIHandlerInterface
    
    Returns the Component displaying the current active image.
    
    Specified by:
    
    getComponentImage in interface VOIHandlerInterface
    
    Returns:
    
    the Component displaying the current active image.
  - getPointerButton
```
public javax.swing.JToggleButton getPointerButton()
```
    Returns the pointer button, used by VOIManager to determine if the pointer button is active.
    
    Returns:
    
    current pointer button.
  - getToolBar
```
public javax.swing.JToolBar getToolBar()
```
    Returns the VOIToolbar.
    
    Returns:
    
    VOIToolbar.
  - getVOI_ID
```
public int getVOI_ID()
```
    Specified by:
    
    getVOI_ID in interface VOIHandlerInterface
    
    Returns:
    
    0.
  - getVOIManager
```
public VOIManager getVOIManager(int i)
```
    Returns the VOIManager at the given position.
    
    Parameters:
    
    i - the index of the VOIManager to return.
    
    Returns:
    
    VOIManager.
  - getVOIManagerNum
```
public int getVOIManagerNum()
```
    Returns the number of VOIManagers controlled by this VOIHandler.
  - graph25VOI_CalcInten
```
public void graph25VOI_CalcInten(boolean totalIntensity,
                                 boolean useThreshold,
                                 float threshold)
```
    Description copied from interface: VOIHandlerInterface
    
    Generates and displays a 1D graph of the average or total intensity of 2.5 VOI of 2.5D image (3D).
    
    Specified by:
    
    graph25VOI_CalcInten in interface VOIHandlerInterface
    
    Parameters:
    
    totalIntensity - if true calculates total sum of the intensity else calculates the average pixel intensity
    
    useThreshold - whether or not to threshold this intensity plot
    
    threshold - the threshold value to use, if thresholding.
  - isNewVoiNeeded
```
public boolean isNewVoiNeeded(int voiType)
```
    Specified by:
    
    isNewVoiNeeded in interface VOIHandlerInterface
    
    Returns:
    
    false
  - make3DVOI
```
public boolean make3DVOI(boolean bIntersection,
                         ModelImage kVolume)
```
    Creates a 3D Surface out of the VOIs.
    
    Parameters:
    
    bIntersection - when true the intersection of the VOIs is used to create the surface, when false a union of the VOIs is used to create the surface.
    
    kVolume - ModelImage, the union or intersection is written into the input ModelImage.
    
    Returns:
    
    true if success, false if no voxels are in the union or intersection.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent event)
```
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent arg0)
```
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
  - mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent arg0)
```
    Specified by:
    
    mouseMoved in interface java.awt.event.MouseMotionListener
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
  - moveVOI
```
public void moveVOI(java.lang.String kCommand,
                    float fScale)
```
  - moveVOI
```
public void moveVOI(VOIManager kActive,
                    WildMagic.LibFoundation.Mathematics.Vector3f kDiff,
                    int iPlane,
                    boolean bFirstMove,
                    boolean bUseMouse)
```
    Called from the VOIManager class when multiple contours are selected and moved as a group. This function calculates the group bounding box and tests the move to ensure the contours are not moved out of the image bounds.
    
    Parameters:
    
    kActive - VOIManager initiating the call.
    
    kDiff - the move distance
    
    iPlane - the plane of the VOIManager (equivalent to Axial, Coronal, Sagittal)
    
    bFirstMove - true if this is the first move for the selected group of contours.
  - newVOI
```
public void newVOI(boolean bPropagate,
                   boolean bSplit)
```
    Initiate a new VOI.
    
    Parameters:
    
    bPropagate - when true propagate the newVOI command to the VOIManagers.
    
    bSplit - true if this is a new SplitVOI.
  - newVOI
```
public void newVOI(float presetHue)
```
    Description copied from interface: VOIHandlerInterface
    
    Initiate a new VOI.
    
    Specified by:
    
    newVOI in interface VOIHandlerInterface
    
    Parameters:
    
    presetHue - new VOI color
  - pasteVOI
```
public void pasteVOI(VOIBase kNew)
```
    Paste the input VOIBase.
    
    Parameters:
    
    kNew - the enw VOIBase to paste.
  - propVOI
```
public boolean propVOI(int direction,
                       boolean active)
```
    Description copied from interface: VOIHandlerInterface
    
    Propagates the selected VOI in a given direction. This function is deprecated, replace with actionPerformed(ActionEvent) using CustomUIBuilder.PARAM_VOI_PROPAGATE_UP or CustomUIBuilder.PARAM_VOI_PROPAGATE_DOWN
    
    Specified by:
    
    propVOI in interface VOIHandlerInterface
    
    Parameters:
    
    direction - Up +1, or Down -1
    
    active - unused.
    
    Returns:
    
    true if success, false otherwise
  - propVOIAll
```
public boolean propVOIAll()
```
    Description copied from interface: VOIHandlerInterface
    
    Propagates the selected VOI to all slices. This function is deprecated, replace with actionPerformed(ActionEvent) using CustomUIBuilder.PARAM_VOI_PROPAGATE_ALL.
    
    Specified by:
    
    propVOIAll in interface VOIHandlerInterface
    
    Returns:
    
    true if success, false otherwise
  - quickLUT
```
public void quickLUT(VOIBase kLUT)
```
    Called from the VOIManager class when a user has drawn the QuickLUT rectangle. This function calculates the new LUT and updates the images.
    
    Parameters:
    
    kLUT - VOIBase defining the QuickLUT rectangle.
  - removedCurve
```
public void removedCurve(VOIEvent removed)
```
    Description copied from interface: VOIListener
    
    handles to the VOI being removed from the Vector.
    
    Specified by:
    
    removedCurve in interface VOIListener
    
    Parameters:
    
    removed - DOCUMENT ME!
  - removedVOI
```
public void removedVOI(VOIVectorEvent removed)
```
    Description copied from interface: VOIVectorListener
    
    handles to the VOI being removed from the Vector.
    
    Specified by:
    
    removedVOI in interface VOIVectorListener
    
    Parameters:
    
    removed - DOCUMENT ME!
  - removeVOIManager
```
public void removeVOIManager(VOIManager kVOIManager)
```
  - removeVOIUpdateListener
```
public void removeVOIUpdateListener(UpdateVOISelectionListener listener)
```
    Description copied from interface: VOIHandlerInterface
    
    Removes the UpdateVOISelectionListener from the list.
    
    Specified by:
    
    removeVOIUpdateListener in interface VOIHandlerInterface
    
    Parameters:
    
    listener - the UpdateVOIselectionListener to remove.
  - resetLivewire
```
public void resetLivewire()
```
    Description copied from interface: VOIHandlerInterface
    
    Resets the current livewire VOI.
    
    Specified by:
    
    resetLivewire in interface VOIHandlerInterface
  - saveVOIs
```
public void saveVOIs(java.lang.String kCommand)
```
    Save the current VOIState to the undo/re-do list.
    
    Parameters:
    
    kCommand - the VOI Action Command about to be issued.
  - clearUndoRedo
```
public void clearUndoRedo()
```
  - selectAllVOIs
```
public void selectAllVOIs(boolean bActive)
```
    Description copied from interface: VOIHandlerInterface
    
    Selects all VOIs. This function is deprecated, replace with actionPerformed(ActionEvent) using CustomUIBuilder.PARAM_VOI_SELECT_ALL and CustomUIBuilder.PARAM_VOI_SELECT_NONE
    
    Specified by:
    
    selectAllVOIs in interface VOIHandlerInterface
  - selectedVOI
```
public void selectedVOI(VOIEvent selection)
```
    Description copied from interface: VOIListener
    
    handles the VOI being selected. -- a state-change.
    
    Specified by:
    
    selectedVOI in interface VOIListener
    
    Parameters:
    
    selection - DOCUMENT ME!
  - setActive
```
public void setActive(VOIManager kManager,
                      ModelImage kActiveImage)
```
    Called from the VOIManager. Sets the current active VOIManager.
    
    Parameters:
    
    kManager - calling VOIManager.
  - setButtonColor
```
public void setButtonColor(javax.swing.JButton _button,
                           java.awt.Color _color)
```
    Set the color of the button. Derived classes may also perform other functions.
    
    Parameters:
    
    _button - button.
    
    _color - color.
  - setCenter
```
public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f center)
```
    Description copied from interface: VOIHandlerInterface
    
    Sets the current displayed slice for 3D images. The current center is the slice value of the three orthogonal planes displayed in the ViewJFrameTriImage. When this function is called from ViewJFrameImage the X,Y, parameters are ignored and current slice is the Z-value.
    
    Specified by:
    
    setCenter in interface VOIHandlerInterface
    
    Parameters:
    
    center - ModelImage file coordinates representation of the slice values of the three orthogonal image planes.
  - setCenter
```
public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f center,
                      boolean bParent)
```
    Description copied from interface: VOIHandlerInterface
    
    Sets the current displayed slice for 3D images. The current center is the slice value of the three orthogonal planes displayed in the ViewJFrameTriImage. When this function is called from ViewJFrameImage the X,Y, parameters are ignored and current slice is the Z-value.
    
    Specified by:
    
    setCenter in interface VOIHandlerInterface
    
    Parameters:
    
    center - ModelImage file coordinates representation of the slice values of the three orthogonal image planes.
    
    bParent - when true call parent.setCenter()
  - setCursor
```
public void setCursor(java.awt.Cursor kCursor)
```
    Called from VOIManager to change the mouse cursor.
    
    Parameters:
    
    kCursor - new Cursor.
  - setDefaultCursor
```
public void setDefaultCursor()
```
    Called from VOIManager to set the default mouse cursor. This function triggers events in the parent frame.
  - setEnabled
```
public void setEnabled(boolean flag)
```
    Currently not used.
    
    Parameters:
    
    flag -
  - setOpacity
```
public void setOpacity(float fVal)
```
    Called from JDialogOpacityControls. Sets the VOI opacity.
    
    Parameters:
    
    fVal - VOI opacity.
  - setPointerButton
```
public void setPointerButton(javax.swing.JToggleButton button)
```
    Called when the Default Pointer Button is not part of the default VOI Toolbar.
    
    Parameters:
    
    button - default pointer button.
  - setPresetHue
```
public void setPresetHue(float presetHue)
```
    Description copied from interface: VOIHandlerInterface
    
    Sets the hue that will be used to draw the new VOI.
    
    Specified by:
    
    setPresetHue in interface VOIHandlerInterface
    
    Parameters:
    
    presetHue - the hue to be used
  - setRenderer
```
public void setRenderer(VolumeTriPlanarRenderBase renderer)
```
  - setSelectedVOI
```
public void setSelectedVOI(VOI kSelected,
                           boolean bSelectAll,
                           boolean bUnSelectVOI)
```
    Called from the VOIManager when a new VOI is selected by the mouse.
    
    Parameters:
    
    kSelected - selected VOI.
    
    bSelectAll - when true select all contours in the VOI (usually shift-key is down).
    
    bUnSelectVOI - when true unselect the previously selected VOI (if the control-key is down multiple different VOIs can be selected).
  - setVOI_IDs
```
public void setVOI_IDs(int ID,
                       int UID)
```
    Description copied from interface: VOIHandlerInterface
    
    This function is deprecated.
    
    Specified by:
    
    setVOI_IDs in interface VOIHandlerInterface
    
    Parameters:
    
    ID - not used.
    
    UID - not used.
  - setVOITools
```
public void setVOITools(javax.swing.JMenu voiMenu,
                        ViewMenuBuilder voiMenuBuilder)
```
  - showColorDialog
```
public void showColorDialog()
```
    Description copied from interface: VOIHandlerInterface
    
    Opens the color dialog for changing the selected VOI color.
    
    Specified by:
    
    showColorDialog in interface VOIHandlerInterface
  - showCurvatureInfo
```
public void showCurvatureInfo(VOIBase kVOI,
                              int m_iPlane,
                              boolean showGraph,
                              boolean smoothCurvature)
```
    Called from the VOIManager. Displays the Curvature Graph for the input VOIBase.
    
    Parameters:
    
    kVOI - VOIBase to graph.
    
    m_iPlane - the plane on which to show intensity info
    
    showGraph -
    
    smooth -
  - showIntensityInfo
```
public void showIntensityInfo(VOIBase kVOI,
                              int m_iPlane,
                              boolean showGraph)
```
    Called from the VOIManager. Displays the Intensity Graph for the input VOIBase.
    
    Parameters:
    
    kVOI - VOIBase to graph.
    
    m_iPlane - the plane on which to show intensity info
  - updateDisplay
```
public void updateDisplay()
```
    Called from VOIManager. Causes the parent frame to redraw the ModelImage and VOIs.
  - updateGraph
```
public void updateGraph(VOIBase kVOI,
                        int m_iPlane)
```
    Called from the VOIManager when the VOIBase that is currently being graphed has changed.
    
    Parameters:
    
    kVOI - the modified VOIBase.
  - vectorSelected
```
public void vectorSelected(VOIVectorEvent selection)
```
    Description copied from interface: VOIVectorListener
    
    handles the VOI being selected.
    
    Specified by:
    
    vectorSelected in interface VOIVectorListener
    
    Parameters:
    
    selection - DOCUMENT ME!
  - addVOI
```
private void addVOI(ModelImage kImage,
                    VOIBase kNew,
                    boolean bQuickLUT,
                    boolean bUpdate,
                    boolean isFinished)
```
  - advanceVOIUID
```
private void advanceVOIUID()
```
    Increments the VOI uid for internal tracking, used during both creation and loading of a new VOI
  - changeVOIOrder
```
private void changeVOIOrder(boolean doContour,
                            int direction)
```
  - checkForActiveVOIs
```
private boolean checkForActiveVOIs()
```
  - clearList
```
private void clearList(java.util.Vector<VOISaveState> list,
                       int limit)
```
  - copy
```
private int copy()
```
  - createMask
```
private void createMask(ModelImage kActive,
                        boolean bInside)
```
  - createMask
```
private void createMask(java.lang.String command)
```
  - cut
```
private int cut()
```
  - deleteActiveVOI
```
private void deleteActiveVOI()
```
  - deleteAllVOI
```
private void deleteAllVOI()
```
  - deleteVOIActivePt
```
private void deleteVOIActivePt()
```
  - evolveBoundary2D
```
private void evolveBoundary2D(java.lang.String command)
```
  - findCompatibleType
```
private void findCompatibleType(ModelImage kImage,
                                VOIBase kNew,
                                boolean isFinished)
```
  - getActiveVOICount
```
private int getActiveVOICount()
```
  - getFrame
```
private javax.swing.JFrame getFrame()
```
  - getSlice
```
private int getSlice()
```
  - getVOIState
```
protected VOISaveState getVOIState()
```
  - graphPointVOI
```
private void graphPointVOI(VOI v,
                           VOIPoint voiPt,
                           int j,
                           boolean useFrameRefTime)
```
  - graphVOI
```
private void graphVOI()
```
  - graphVOICurvature
```
private void graphVOICurvature(boolean smooth)
```
  - indentationVOIs2D
```
private void indentationVOIs2D()
```
  - interpolateVOIs
```
private void interpolateVOIs()
```
  - isDrawCommand
```
private boolean isDrawCommand(java.lang.String kCommand)
```
  - loadAllVOIs
```
private void loadAllVOIs(boolean quietMode)
```
    This method loads all VOIs to the active image from the default VOI directory for that image.
    
    Parameters:
    
    quietMode - if true indicates that warnings should not be displayed.
  - loadAllVOIsFrom
```
private void loadAllVOIsFrom(java.lang.String voiDir,
                             boolean quietMode)
```
    This method loads all VOIs to the active image from a given directory.
    
    Parameters:
    
    voiDir - the directory to load voi's from
    
    quietMode - if true indicates that warnings should not be displayed.
  - loadAllVOIsFrom
```
protected void loadAllVOIsFrom(java.lang.String voiDir,
                               boolean quietMode,
                               VOIVector resultVector,
                               boolean registerVOIs)
```
    This method loads all VOIs to the active image from a given directory.
    
    Parameters:
    
    voiDir - the directory to load voi's from
    
    quietMode - if true indicates that warnings should not be displayed.
  - loadAllImageJVOIsFrom
```
protected void loadAllImageJVOIsFrom(java.lang.String voiDir,
                                     boolean quietMode,
                                     VOIVector resultVector,
                                     boolean registerVOIs)
```
    This method loads all ImageJ VOIs to the active image from a given directory.
    
    Parameters:
    
    voiDir - the directory to load voi's from
    
    quietMode - if true indicates that warnings should not be displayed.
  - make3DVOI
```
private boolean make3DVOI(boolean bIntersection,
                          ModelImage kSrc,
                          ModelImage kVolume,
                          java.util.BitSet kMask,
                          VOIManager kManager,
                          int iValue)
```
  - matches
```
private boolean matches(int iType1,
                        int iType2,
                        boolean isFinished)
```
  - openVOI
```
private boolean openVOI(boolean quietMode,
                        boolean doLabels)
```
    This method opens an existing VOI.
    
    Parameters:
    
    quietMode - if true indicates that warnings should not be displayed.
    
    doLabels - DOCUMENT ME!
    
    Returns:
    
    whether a VOI was successfully opened (ie - the dialog wasn't cancelled)
  - openOtherOrientationVOI
```
private boolean openOtherOrientationVOI(boolean quietMode)
```
  - openPaint
```
private boolean openPaint(boolean quietMode)
```
  - paintToVOI
```
private void paintToVOI()
```
  - paste
```
private void paste()
```
  - levelSet3D
```
private void levelSet3D()
```
  - pasteAll
```
private void pasteAll()
```
  - pasteFromViewUserInterface
```
private void pasteFromViewUserInterface()
```
  - propagate
```
private void propagate(int dir)
```
  - quickLUT
```
private void quickLUT(WildMagic.LibFoundation.Mathematics.Vector3f[] akMinMax,
                      ModelImage image,
                      ModelLUT LUT)
```
    method that performs the quick LUT operation
    
    Parameters:
    
    akMinMax -
    
    image -
    
    LUT -
  - quickRGB
```
private void quickRGB(WildMagic.LibFoundation.Mathematics.Vector3f[] akMinMax,
                      ModelImage image,
                      ModelRGB RGB)
```
    DOCUMENT ME!
    
    Parameters:
    
    xS - DOCUMENT ME!
    
    wS - DOCUMENT ME!
    
    yS - DOCUMENT ME!
    
    hS - DOCUMENT ME!
    
    imageBuffer - DOCUMENT ME!
    
    image - DOCUMENT ME!
    
    RGB - DOCUMENT ME!
  - redoImage
```
private void redoImage()
```
  - redoVOI
```
private void redoVOI()
```
  - redoVOIs
```
protected void redoVOIs()
```
  - saveAllVOIs
```
private void saveAllVOIs()
```
    This method saves all VOIs for the active image to the default VOI directory for that image.
  - saveAllVOIsTo
```
private void saveAllVOIsTo(java.lang.String voiDir)
```
    This method saves all VOIs for the active image to a given directory.
    
    Parameters:
    
    voiDir - directory that contains VOIs for this image.
  - saveImage
```
private void saveImage(java.lang.String kCommand)
```
    Save the dicom matrix header info. The .ply file format can't save the dicom info. We decide to save the dicom info when save the VOI file. So, the dicom info will be read when load the .ply surface into the volume render. This ensures the correct scale of surface. The dicom matrix info is saved in the current image directory with the .dicomMatrix suffix.
  - saveLabels
```
private void saveLabels(boolean saveAll)
```
  - saveVOI
```
private void saveVOI(boolean saveAllContours)
```
    This method saves a selected VOI
    
    Parameters:
    
    saveAllContours - if true all contours are saved
  - saveVOIAs
```
private void saveVOIAs(boolean saveAllContours)
```
    This method allows the user to choose how to save the VOI.
    
    Parameters:
    
    saveAllContours - if true all contours are saved
  - exportSelectedVOIs
```
private void exportSelectedVOIs()
```
  - importVOI
```
private void importVOI()
```
  - savePaint
```
private void savePaint()
```
  - savePaintAs
```
private void savePaintAs()
```
    This method allows the user to choose how to save the paint bitmap.
  - saveVOIIntensities
```
private void saveVOIIntensities()
```
    Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex. If color use format x,y,z,a,r,g,b on each line and if complex use format x,y,z,real,imaginary on each line.
  - saveVOIIntensitiesTo
```
private void saveVOIIntensitiesTo(java.lang.String voiIntensitiesPath)
```
    Save intensities in VOI to a text file of format x,y,z,intensity on each line if not color or complex. If color use format x,y,z,a,r,g,b on each line and if complex use format x,y,z,real,imaginary on each line.
  - setCurrentColor
```
private void setCurrentColor()
```
  - setGraphVisible
```
private void setGraphVisible()
```
  - setPAAIGraphVisible
```
private void setPAAIGraphVisible()
```
  - setVOIState
```
protected void setVOIState(VOISaveState kVOIState)
```
  - undoImage
```
private void undoImage()
```
  - undoVOI
```
private void undoVOI()
```
  - undoVOIs
```
protected void undoVOIs()
```
  - showStatisticsCalculator
```
protected void showStatisticsCalculator()
```
    Opens a JDialogStatistics to allow computation ofROI statistics.
  - showVOIProperties
```
protected void showVOIProperties()
```
  - initVOIManagers
```
protected void initVOIManagers(int iNViews)
```
  - readImageJ
```
private void readImageJ(java.lang.String pathName,
                        java.lang.String fileName,
                        ModelImage image)
```
  - makeShapeFromArray
```
private void makeShapeFromArray(float[] array,
                                java.util.Vector<java.util.Vector<java.lang.Integer>> xVector,
                                java.util.Vector<java.util.Vector<java.lang.Integer>> yVector)
```
  - getSegment
```
private int getSegment(float[] array,
                       float[] seg,
                       int index)
```
  - extractNumber
```
public java.lang.String extractNumber(java.lang.String str)
```
  - getBufferShort
```
public final short getBufferShort(byte[] buffer,
                                  int index,
                                  boolean bigEndian)
```
    Converts byte data to short data.
    
    Parameters:
    
    buffer - Array of byte data.
    
    index - Index into array data.
    
    bigEndian - true indicates big endian byte order, false indicates little endian.
    
    Returns:
    
    Short value extracted from byte array.
  - getByte
```
public final short getByte(byte[] buffer,
                           int index)
```
  - getBufferInt
```
public final int getBufferInt(byte[] buffer,
                              int index,
                              boolean bigEndian)
```
    Converts byte data to int data.
    
    Parameters:
    
    buffer - Array of byte data.
    
    index - Index into array data.
    
    bigEndian - true indicates big endian byte order, false indicates little endian.
    
    Returns:
    
    Integer value extracted from byte array.
  - getBufferFloat
```
public final float getBufferFloat(byte[] buffer,
                                  int index,
                                  boolean bigEndian)
```
    Converts byte data to float data.
    
    Parameters:
    
    buffer - Array of byte data.
    
    index - Index into array data.
    
    bigEndian - true indicates big endian byte order, false indicates little endian.
    
    Returns:
    
    Float value extracted from byte array.
  - readCSV
```
private void readCSV(java.lang.String fileName,
                     ModelImage image)
```
  - readFreesurferBinaryPatch
```
private void readFreesurferBinaryPatch(java.lang.String fileName,
                                       ModelImage image)
```

Class VOIManagerInterface

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

m_kParent

m_kImageA

m_kImageB

toolbarBuilder

m_kVOIToolbar

colorChooser

m_kVOIManagers

m_iActive

voiUID

m_kCurrentVOIGroup

m_kUndoCommands

m_kRedoCommands

m_fOpacity

m_bGPURenderer

renderer

m_kVOIDialog

m_kVOILogicalOperationsDialog

m_kVOIHausdorffDistanceDialog

m_iMaxUndo

m_kUndoList

m_kRedoList

m_kImageAUndo

m_kImageARedo

m_kImageBUndo

m_kImageBRedo

m_akBounds

listenerList

popup

popupPt

currentColor

saveGroup

m_kActiveList

m_kPointerButton

imageStatList

presetHue

m_bDefaultImage

m_kTempImage

voiMenu

voiMenuBuilder

Constructor Detail

VOIManagerInterface

Method Detail

actionPerformed

addedCurve

addedVOI

addVOI

addVOIManager

addVOIUpdateListener

algorithmPerformed

colorChanged

deleteSelectedVOI

deleteVOI

deleteVOIs

disposeLocal

doVOI

fireVOISelectionChange

fireVOISelectionChange

getActiveImage

getComponentImage

getPointerButton

getToolBar

getVOI_ID

getVOIManager

getVOIManagerNum

graph25VOI_CalcInten

isNewVoiNeeded

make3DVOI

mouseClicked

mouseDragged

mouseEntered

mouseExited

mouseMoved

mousePressed