Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmFlip

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmFlip

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class AlgorithmFlip
extends AlgorithmBase

Flips 2D, 3D or 4D grays scale or color dataset about X, Y, or Z axis (when applicable) when AlgorithmFlip.IMAGE is passed to the constructor. An option is given to flip all VOIs at this time. When AlgorithmFlip.VOI is passed, only the selected VOI is flipped about the specified axis.

Version:

1.0 July 14, 2000

Author:

Matthew J. McAuliffe, Ph.D.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
private class	AlgorithmFlip.ShapeHolder	DOCUMENT ME!

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	changeOrientationOrigin	Whether orientation and origin should change with flipping.
private int	flipAxis	Axis to flip along.
private int	flipObject	Type of object to flip.
static int	IMAGE	Denotes image should be flipped without VOI.
static int	IMAGE_AND_VOI	Image and all VOIs should be flipped.
static int	VOI_TYPE	Denotes selected VOI should be flipped.
static int	X_AXIS	Flip along X axis.
static int	Y_AXIS	Flip along Y axis.
static int	Z_AXIS	Flip along Z axis.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmFlip(ModelImage srcImg, int flipMode, int flipObject, boolean changeOrientationOrigin)	Flips 2D, 3D or 4D grays scale or color dataset about X or Y axis.

Method Summary

Modifier and Type	Method	Description
private void	calcInPlace(int nImages)	Generates the flipped image and replaces the source image with the flippeded image.
void	finalize()	Prepares this class for destruction.
void	runAlgorithm()	Runs the flip algorithm.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

Y_AXIS

public static final int Y_AXIS

Flip along Y axis.

See Also:

Constant Field Values

X_AXIS

public static final int X_AXIS

Flip along X axis.

See Also:

Constant Field Values

Z_AXIS

public static final int Z_AXIS

Flip along Z axis.

See Also:

Constant Field Values

IMAGE_AND_VOI

public static final int IMAGE_AND_VOI

Image and all VOIs should be flipped.

See Also:

Constant Field Values

IMAGE

public static final int IMAGE

Denotes image should be flipped without VOI.

See Also:

Constant Field Values

VOI_TYPE

public static final int VOI_TYPE

Denotes selected VOI should be flipped.

See Also:

Constant Field Values

flipAxis

private int flipAxis

Axis to flip along.

flipObject

private int flipObject

Type of object to flip.

changeOrientationOrigin

private boolean changeOrientationOrigin

Whether orientation and origin should change with flipping.

Constructor Detail

AlgorithmFlip

public AlgorithmFlip(ModelImage srcImg,
                     int flipMode,
                     int flipObject,
                     boolean changeOrientationOrigin)

Flips 2D, 3D or 4D grays scale or color dataset about X or Y axis.

Parameters:

srcImg - source image model

flipMode - flip about which axis

flipObject - DOCUMENT ME!

changeOrientationOrigin -

Method Detail

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

runAlgorithm

public void runAlgorithm()

Runs the flip algorithm.

Specified by:

runAlgorithm in class AlgorithmBase

calcInPlace

private void calcInPlace(int nImages)

Generates the flipped image and replaces the source image with the flippeded image.

Parameters:

nImages - Number of images to be flipped. If 2D image then nImage = 1, if 3D or 4D image where each image is to processed independently then nImages equals the number of images in the volume.