Package gov.nih.mipav.view.renderer.J3D

Class ViewJFrameVolumeView

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

gov.nih.mipav.view.ViewJFrameBase

gov.nih.mipav.view.renderer.J3D.ViewJFrameVolumeView

All Implemented Interfaces:

ViewImageUpdateInterface, ActionListener, ComponentListener, ItemListener, MouseListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

public class ViewJFrameVolumeView
extends ViewJFrameBase
implements MouseListener, ItemListener, ChangeListener

The volume view frame of the visualization. The frame includes the surface renderer, the raycast renderer, the shearwarp renderer and the flythru renderer.

Author:

Ruida Cheng

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	ViewJFrameVolumeView.TabbedItem	Item to hold tab name and corresponding panel.

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	axialOrientation	Indicates that image orientation is unknown type or not.
static final int	BRAINSURFACE_FLATTENER	DOCUMENT ME!
private MjCorticalAnalysis	brainsurfaceFlattenerRender	Rendering the brainsurfaceFlattener objects.
private JPanel	cameraPanel	DOCUMENT ME!
private JPanel	clipBox	DOCUMENT ME!
private JButton	clipButton	Button to invoke all the six clipping planes.
private JButton	clipDisableButton	Button to disable all the six clipping planes.
private JButton	clipMaskButton	Button to crop the clip volume.
private JButton	clipMaskUndoButton	Button to undo crop the clip volume.
private JPanel	clipPanel	DOCUMENT ME!
private JButton	clipPlaneButton	Button to invoke clipping planes.
private JButton	clipSaveButton	Button to save clipped region.
private Border	compound	Panel Border view.
protected GraphicsConfiguration	config	Configuration param, which will pass down to each render's constructor.
private JPanel	displayPanel	DOCUMENT ME!
private JSplitPane	dualImagePane	dual image pane that holds the left and right panel.
private JPanel	dualImagePanel	The image panel to hold two Canvas3D.
private JPanel	dualLeftPanel	Left panel of the dual panel view.
static final int	DUALPANEL	DOCUMENT ME!
private JPanel	dualRightPanel	Right panel of the dual panel view.
static final int	ENDOSCOPY	DOCUMENT ME!
private Border	etchedBorder	Panel Border view.
private boolean	firstTimeVolView	Keep track of whether we're switching to the volume renderer for the first time.
private JPanelVirtualEndoscopySetup	flythruControl	Fly through setup control panel.
private JPanelFlythruMove	flythruMoveControl	Fly through movement control panel.
private JPanel	flythruMovePanel	View panel contains the fly thru control panel.
private FlythruRender.SetupOptions	flythruOptions	Fly through options.
private JPanel	flythruPanel	Fly through panel.
private FlythruRender	flythruRender	Reference to fly through renderer.
private JButton	flythruSurfaceButton	Surface load button.
private Vector	flythruTabVector	DOCUMENT ME!
private JToolBar	flyThruToolbar	Flythru toolbar.
private JPanel	histoLUTPanel	Control panel for the surface renderer.
private ModelImage	imageAOriginal	Reference to the imageA original copy.
private int	imageOrientation	Image orientation: coronal, sagittal, axial, unknown.
private JPanel	imagePanel	The image panel to hold one Canvas3D.
private JDialogIntensityPaint	intensityDialog	DOCUMENT ME!
private boolean	isBrainsurfaceFlattenerEnable	Indicate if the brainsurface flattener render is enabled from the resample dialog or not.
private boolean	isEndoscopyEnable	Indicate if the fly through render is enabled from the resample dialog or not.
protected ModelImage	isoImageA	Isotropic version image A, B, used by the shear warp renderer.
protected ModelImage	isoImageB	Isotropic version image A, B, used by the shear warp renderer.
private boolean	isRayCastEnable	Indicate if the raycast render is enabled from the resample dialog or not.
private boolean	isShearWarpEnable	Indicate if the shear warp render is enabled from the resample dialog or not.
private boolean	isSurfaceRenderEnable	Indicate if the surface render is enabled from the resample dialog or not.
private boolean	isSurfaceViewEnable	Indicate if the surface view is enabled from the resample dialog or not.
private int	leftPanelRenderMode	The left panel renderer mode.
private JPanel	lightPanel	DOCUMENT ME!
private Border	loweredbevel	Panel Border view.
private PlaneRender[]	m_akPlaneRender	The three slice views displayed as texture-mapped polygons:.
private JPanel	m_kBrainsurfaceFlattenerPanel	Control panels for the Brainsurface Flattener:.
private JPanel	m_kGeodesicPanel	Control panel for drawing geodesic curves.
private JPanel	m_kSculptPanel	Control panel for volume sculpting.
private int	maxPanelWidth	The max width of the control panels.
private JMenuBar	menuBar	Menu bar.
protected ViewMenuBuilder	menuObj	Menu items storage.
protected JLabel	modelViewLabel	Labels for the current position in 3D ModelView coordinates:.
protected JLabel[]	modelViewLabelVals	DOCUMENT ME!
private JPanel	mousePanel	DOCUMENT ME!
static final int	NONE	Render mode values.
private JDialogOpacityControls	opacityDialog	DOCUMENT ME!
private JPanel	opacityPanel	DOCUMENT ME!
protected int[]	orient	Orientations of the three axes.
private ModelImage	paddingImageA	Padding imageA with blank images feeding.
private ModelImage	paddingImageB	Padding imageB with blank images feeding.
private JDialogPaintGrow	paintGrowDialog	Control panels of the triplanar view.
private JFrameHistogram	panelHistogram	LUT control panel of the gray scale image.
(package private) JPanel	panelLabels	Panel containing the position labels:.
protected JPanel	panelToolbar	Panel that holds the toolbars.
private JToggleButton	parallelButton	Rendering parallel rotation button.
protected JLabel	patientSliceLabel	Labels for the current position in PatientSlice coordinates:.
protected JLabel[]	patientSliceLabelVals	DOCUMENT ME!
private Border	pressedBorder	Panel Border view.
private JPanel	probePanel	DOCUMENT ME!
private JRadioButton	radioCOMPOSITE	Radio button of the COMPOSITE mode option.
private JRadioButton	radioCOMPOSITEShear	Radio button of the COMPOSITE mode option.
private JRadioButton	radioMIP	Radio button of the MIP mode option.
private JRadioButton	radioMIPShear	Radio button of the MIP mode option.
private JRadioButton	radioSURFACE	Radio button of the SURFACE mode option.
private JRadioButton	radioSURFACEFAST	Radio button of the SURFACE mode option.
private JRadioButton	radioSURFACEShear	Radio button of the SURFACE mode option.
private JRadioButton	radioSurrenderCOMPOSITE	Radio button of the surface render composite mode.
private JRadioButton	radioSurrenderLIGHT	Radio button of the surface render lighting mode.
private JRadioButton	radioXRAY	Radio button of the XRAY mode option.
private JRadioButton	radioXRAYShear	Radio button of the XRAY mode option.
private Border	raisedbevel	Panel Border view.
static final int	RAYCAST	DOCUMENT ME!
private JPanel	raycastCameraPanel	DOCUMENT ME!
private JPanel	raycastOptionsPanel	Control panels for the raycast render.
private VolumeRendererRayCast	raycastRender	DOCUMENT ME!
private Vector	raycastTabVector	DOCUMENT ME!
private JToolBar	rayCastToolBar	Raycast toolbar.
private Border	redBorder	Panel Border view.
protected static JProgressBar	rendererProgressBar	The small bar on the top right corner the volume view frame.
private JDialogVolViewResample	resampleDialog	Reference to resample dialog, use to null out the resample dialog in this frame.
private JButton	rfaButton	Button for RFA.
private JButton	rfaSeparator	RFA separator.
protected ModelRGB	RGBTA	Lookup table of the color imageA, B.
protected ModelRGB	RGBTB	Lookup table of the color imageA, B.
private JSplitPane	rightPane	The view pane that contains the image view and tri-planar view panels.
private int	rightPanelRenderMode	The right panel renderer mode.
private int	screenHeight	Screen width, screen height.
private int	screenWidth	Screen width, screen height.
private int	sculptHeight	Sculpt region height.
private int	sculptWidth	Sculpt region width.
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
protected Font	serif12	Fonts, same as MipavUtil.font12 and MipavUtil.font12B.
protected Font	serif12B	Fonts, same as MipavUtil.font12 and MipavUtil.font12B.
static final int	SHEARWARP	DOCUMENT ME!
private JPanel	shearwarpCameraPanel	DOCUMENT ME!
private JPanel	shearwarpOptionsPanel	Control panels for the shearwarp render.
private VolumeRendererShearWarp	shearwarpRender	DOCUMENT ME!
private Vector	shearwarpTabVector	DOCUMENT ME!
private JToolBar	shearWarpToolBar	Shearwarp toolbar.
private JPanel	slicePanel	DOCUMENT ME!
private int	storeTabbedPaneIndex	Previoius tab index recorder.
static final int	SURFACE	DOCUMENT ME!
private JPanel	surfacePanel	DOCUMENT ME!
static final int	SURFACEVIEW	DOCUMENT ME!
private SurfaceRender	surRender	Three types of renderer.
private Vector	surTabVector	For each render, use the vector to store the currently active tabs.
private SurfaceView	surView	Surface View reference
private ViewToolBarBuilder	toolbarBuilder	Toolbar builder reference.
private JPanel	triImagePanel	Tri image planar render panels.
private JToggleButton	unparallelButton	Rendering unparallel rotaion button.
private JPanel	viewPanel	DOCUMENT ME!
private JToolBar	viewToolBar	The top one render view switch toolbar.
private JToolBar	volToolBar	Surface Render toolbar.

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
ViewJFrameVolumeView(ModelImage _imageA, ModelLUT LUTa, ModelRGB _RGBTA, ModelImage _imageB, ModelLUT LUTb, ModelRGB _RGBTB, int _leftPanelRenderMode, int _rightPanelRenderMode, JDialogVolViewResample _resampleDialog)	Make a volume rendering frame, which contains the toolbars on the top, control panel on the left, the volume rendering panel on the right, and the three orthogonal view ( axial, sagittal, coronal, views) on the bottom right.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Calls various methods depending on the action.
void	addAttachedSurfaces()	Add any attached surfaces the current image has in its file info (if the file info is in the xml format).
void	addBranch(javax.media.j3d.BranchGroup kBranch, ModelTriangleMesh kMesh, javax.vecmath.Point3f kCenter)	Updates the surRender -- adds a BranchGroup to the main Display.
void	addFlightPath()	Updates the surRender to display the flythru flight path from the flythruRender.
void	addSurface(String dir, File file)	Adding surface to the 3D texuture volume.
private void	addToolbar()	Add surface volume renderer control buttons.
void	buildBrainsurfaceFlattener()	Build the Brainsurface Flattener panel:
void	buildCameraPanel()	Build the camera control panel for the surface render.
void	buildClipPanel()	Build the clipping control panel for the surface render.
void	buildDisplayPanel()	Build the display control panel for the surface render.
void	buildFlythruMovePanel()	Build the flythru move control panel.
void	buildFlythruPanel()	Build the flythru control panel.
private void	buildFlyThruToolbar()	Build the fly through toolbar.
void	buildGeodesic()	Build the Geodesic control panel.
void	buildHistoLUTPanel()	The histogram control panel of the lookup table.
void	buildLabelPanel()	The label panel of the x, y, z slider position.
void	buildLightPanel()	Build the light control panel for the surface render.
protected JMenuBar	buildMenu()	Builds menus for the tri-planar view.
void	buildMousePanel()	Build the mouse control panel for the raycast render.
void	buildOpacityPanel()	Build the volume opacity control panel for the surface render.
void	buildProbePanel()	Build the adding surface control panel for the surface render.
void	buildRayCastCameraPanel()	Build the camera control panel for the raycast render.
void	buildRayCastOptions()	Build the view control panel for the raycast render.
private void	buildRayCastToolbar()	Build the raycast toolbar.
void	buildSculpt()	Build the Sculpturing control panel.
void	buildShearWarpCameraPanel()	Build the camera control panel for the shearwarp render.
void	buildShearWarpOptions()	Build the view control panel for the shearwarp render.
private void	buildShearWarpToolbar()	Build the shearwarp toolbar.
void	buildSlicePanel()	Build the slices control panel for the surface render.
void	buildSurfacePanel()	Build the adding surface control panel for the surface render.
private void	buildSurfaceViewToolbar()	The the top one volume view toolbar.
private void	buildSurRenderToolbar()	Build the surface render toolbar.
protected void	buildToolbars()	Builds the toolbars for the tri-planar view.
void	buildViewPanel()	Build the view control panel for the surface render.
private void	buildViewToolbar()	The the top one volume view toolbar.
void	calcShearWarpImage(ModelImage _imageA, ModelImage _imageB)	Transform the image into shear warp image, which has the same resolution.
void	componentResized(ComponentEvent event)	Method called when a component resize event is generated.
protected void	configureFrame()	Constructs main frame structures for image canvas.
void	constructRenderers()	Construct the volume rendering methods based on the choices made from the resample dialog.
void	disableTargetPointPicking()	Disable target point for the RFA probe from within the plane renderer.
void	disposeLocal(boolean flag)	Dispose memory.
void	doPadding(int[] extents, int[] volExtents)	Insert the blank images to the end of image.
void	doResample(int[] volExtents, float[] newRes, boolean forceResample, int nDim, int iFilterType)	Resample the images to power of 2.
void	drawBrainSurfaceFlattenerPoint(javax.vecmath.Point3f kStart, int[] aiIndex, int iWhich)	Draws the point selected on the Mesh for the brainsurfaceFlattener.
void	drawRFAPoint(javax.vecmath.Point3f kPoint)	Called from the PlaneRender class when a new Probe Entry Point has been selected.
private void	enableDualPanelRender()	Enable dual panel renders.
private void	enableFlyThruRender()	Enable the fly through frame layout.
private void	enableShearWarpRender()	Enable the shear warp render.
private void	enableSurfaceRender()	Enable surface render.
void	enableTargetPointPicking()	Enable target point for the RFA probe from within the plane renderer.
private void	enableVolumeRender()	Enable volume render.
protected void	finalize()	Cleans up memory from gc.
int	getBlendValue()	Get the imageA and imageB blending value from the PlaneRender.
ViewControlsImage	getControls()	Required by the parent super class, do nothing.
JFrameHistogram	getHistogramDialog()
ModelImage	getHistoLUTActiveImage()	Returns which image is active in the HistoLUT -- either imageA or imageB.
ModelImage	getHistoRGBActiveImage()	Returns which image is active in the HistoRGB -- either imageA or imageB.
ModelImage	getImageA()	Get the image A reference.
ModelImage	getImageB()	Get the imageB reference.
ModelImage	getImageOriginal()	Get a reference to the original image we passed into the renderer from MIPAV (non-cloned).
JPanelHistoLUT	getLUTDialog()	Deprecated.
JPanelProbe	getProbeDialog()	Return the rfa probe panel.
static final JProgressBar	getRendererProgressBar()	Retrieve the progress bar used in the volume renderer (the one in the upper right hand corner).
JPanelHistoRGB	getRGBDialog()	Deprecated.
ModelImage	getSegmentationImage()	Return the segmentation region map image which contains info on where the vascualture, etc are located.
JSplitPane	getViewPanel()	Return the image panel.
void	insertFlythruTab(String _name, JPanel _panel)	Insert tab into the flythru tab list ( flythru render ) for backup.
void	insertRaycastTab(String _name, JPanel _panel)	Insert tab into the raycast tab list ( raycast render ) for backup.
void	insertShearwarpTab(String _name, JPanel _panel)	Insert tab into the shear warp tab list ( shear warp render ) for backup.
void	insertSurfaceTab(String _name, JPanel _panel)	Insert tab into the surface tab list ( SurfaceRender ) for backup.
void	insertTab(String _name, JPanel _panel)	Insert the new tab into the current visible tab list.
boolean	isBrainSurfaceFlattenerPickEnabled()	Returns the pick enabled state of the brainsurfaceFlattener.
boolean	isGeodesicEnable()	Check whether the Geodesic drawing is enabled or not.
void	itemStateChanged(ItemEvent event)	Sets the flags for the getOptionses and resets labels.
void	mouseClicked(MouseEvent e)	Handle the double mouse click event when the use swith between the dual image panel view.
void	mouseEntered(MouseEvent e)	Methods do nothing, implemented mouseListener.
void	mouseExited(MouseEvent e)	Methods do nothing, implemented mouseListener.
void	mousePressed(MouseEvent e)	Methods do nothing, implemented mouseListener.
void	mouseReleased(MouseEvent e)	Methods do nothing, implemented mouseListener.
void	removeBranch(javax.media.j3d.BranchGroup kBranch, boolean bRemoveMesh)	Updates the surRender -- removes a BranchGroup to the main Display.
void	removeControls()	Required by the parent super class, do nothing.
void	removeProbeLine()	Remove the red line showing where the probe will pass through.
void	resetAxisX()	Reset image volume orieint along X axis.
void	resetAxisY()	Reset image volume orieint along Y axis.
void	resetImage()	Reset image volume orieint along Z axis.
private void	resetLUTMinMax(ModelImage image, ModelLUT lut)	Calculate the LUT from the resampled image.
private void	resizePanel()	Method that resizes the frame and adjusts the rows, columns as needed.
private void	set3DModelPosition(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)	Sets the 3DModel position label.
void	setActiveImage(int active)	Required by the parent super class, do nothing.
void	setAlphaBlend(int value)	Required by the parent super class, do nothing.
void	setControls()	Required by the parent super class, do nothing.
void	setEnabled(boolean flag)	Do nothing methods, just extend the ViewJframeBase.
void	setFlythruColor(Color _color)	Set the flythru surface color.
void	setImageB(ModelImage _imageB)	Required by the parent super class, do nothing.
void	setImageOriginal(ModelImage img)	Set the reference to the original image we passed into the renderer from MIPAV (non-cloned).
void	setLUTa(ModelLUT LUT)	Accessor that sets the LUT.
void	setLUTb(ModelLUT LUT)	Accessor that sets the LUT.
void	setMaterialShininess(float value)	Set material ( texture or voxels ) shininess value.
void	setPaintBitmapSwitch(boolean paintBitmapSwitch)	Required by the parent super class, do nothing.
void	setPathPosition(javax.vecmath.Point3f kPosition, javax.vecmath.Point3f kScaledPosition)	Called when the view position changes in the FlyThruRenderer, updates the position representation in the Slice views:
private void	setPatientSlicePosition(WildMagic.LibFoundation.Mathematics.Vector3f position)	Sets the PatientSlice position label.
void	setPositionLabels(WildMagic.LibFoundation.Mathematics.Vector3f position)	Sets the position labels.
void	setRenderPerspective(boolean bEnable)
private void	setRFAToolbarVisible(boolean flag)	Set the RFA button visible or not.
void	setRGBTA(ModelRGB RGBT)	Sets the RGB table for ARGB image A.
void	setRGBTB(ModelRGB RGBT)	Sets the RGB table for image B.
void	setRightPanelCanvas()	Update the right panel when finish loading Endoscopy images.
void	setSegmentationImage(ModelImage img)	Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).
void	setSlice(int slice)	Required by the parent super class, do nothing.
void	setSliceFromPlane(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)	Sets the position of the slices in the SurfaceRender and PlaneRender objects.
void	setSliceFromSurface(WildMagic.LibFoundation.Mathematics.Vector3f center)	Sets the position of the slices in the PlaneRender.
void	setSliceHairColor(int iView, Color color)	Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.
void	setTimeSlice(int slice)	Required by the parent super class, do nothing.
void	setTitle()	Set the title of the frame with the image name of slice location.
void	stateChanged(ChangeEvent event)	Switch between slices control button and surface render button of the surface toolbar.
void	switchTabList(String command)	Update the tabbed pane when switch view buttons in the View toolbar.
boolean	updateImageExtents()	Update image extends from the ModelImage.
boolean	updateImages()	Update images in surface render, raycast render and shearwarp render.
boolean	updateImages(boolean forceShow)	This methods calls corresponding render to update images without LUT changes.
boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)	This methods calls corresponding render to update images with LUT changes.
void	updateProbePos()	The navigation mode update the probe position in 3D texture volume.
void	updateSliceData()	Causes the PlaneRender objects to update the texture maps when the underlying ModelImage changes.
void	updateSurRenderWinlevel(boolean flag)	Hack.
void	volumeRepaint()	Repaint the volume.
void	windowClosing(WindowEvent event)	Closes window and disposes of frame and component.

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

about, canCloseImageBAfterLoad, close, close, closeImageB, componentHidden, componentMoved, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTA, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

NONE

public static final int NONE

Render mode values.

See Also:

• Constant Field Values

RAYCAST

public static final int RAYCAST

DOCUMENT ME!

See Also:

• Constant Field Values

SHEARWARP

public static final int SHEARWARP

DOCUMENT ME!

See Also:

• Constant Field Values

SURFACE

public static final int SURFACE

DOCUMENT ME!

See Also:

• Constant Field Values

DUALPANEL

public static final int DUALPANEL

DOCUMENT ME!

See Also:

• Constant Field Values

ENDOSCOPY

public static final int ENDOSCOPY

DOCUMENT ME!

See Also:

• Constant Field Values

BRAINSURFACE_FLATTENER

public static final int BRAINSURFACE_FLATTENER

DOCUMENT ME!

See Also:

• Constant Field Values

SURFACEVIEW

public static final int SURFACEVIEW

DOCUMENT ME!

See Also:

• Constant Field Values

rendererProgressBar

protected static JProgressBar rendererProgressBar

The small bar on the top right corner the volume view frame.

config

protected GraphicsConfiguration config

Configuration param, which will pass down to each render's constructor.

isoImageA

protected ModelImage isoImageA

Isotropic version image A, B, used by the shear warp renderer.

isoImageB

protected ModelImage isoImageB

Isotropic version image A, B, used by the shear warp renderer.

menuObj

protected ViewMenuBuilder menuObj

Menu items storage.

modelViewLabel

protected JLabel modelViewLabel

Labels for the current position in 3D ModelView coordinates:.

modelViewLabelVals

protected JLabel[] modelViewLabelVals

DOCUMENT ME!

orient

protected int[] orient

Orientations of the three axes.

panelToolbar

protected JPanel panelToolbar

Panel that holds the toolbars.

patientSliceLabel

protected JLabel patientSliceLabel

Labels for the current position in PatientSlice coordinates:.

patientSliceLabelVals

protected JLabel[] patientSliceLabelVals

DOCUMENT ME!

RGBTA

protected ModelRGB RGBTA

Lookup table of the color imageA, B.

RGBTB

protected ModelRGB RGBTB

Lookup table of the color imageA, B.

serif12

protected Font serif12

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

serif12B

protected Font serif12B

Fonts, same as MipavUtil.font12 and MipavUtil.font12B.

panelLabels

JPanel panelLabels

Panel containing the position labels:.

axialOrientation

private boolean axialOrientation

Indicates that image orientation is unknown type or not.

brainsurfaceFlattenerRender

private MjCorticalAnalysis brainsurfaceFlattenerRender

Rendering the brainsurfaceFlattener objects.

cameraPanel

private JPanel cameraPanel

DOCUMENT ME!

clipBox

private JPanel clipBox

DOCUMENT ME!

clipButton

private JButton clipButton

Button to invoke all the six clipping planes.

clipDisableButton

private JButton clipDisableButton

Button to disable all the six clipping planes.

clipMaskButton

private JButton clipMaskButton

Button to crop the clip volume.

clipMaskUndoButton

private JButton clipMaskUndoButton

Button to undo crop the clip volume.

clipPanel

private JPanel clipPanel

DOCUMENT ME!

clipPlaneButton

private JButton clipPlaneButton

Button to invoke clipping planes.

clipSaveButton

private JButton clipSaveButton

Button to save clipped region.

displayPanel

private JPanel displayPanel

DOCUMENT ME!

dualImagePane

private JSplitPane dualImagePane

dual image pane that holds the left and right panel.

dualImagePanel

private JPanel dualImagePanel

The image panel to hold two Canvas3D.

dualLeftPanel

private JPanel dualLeftPanel

Left panel of the dual panel view.

dualRightPanel

private JPanel dualRightPanel

Right panel of the dual panel view.

firstTimeVolView

private boolean firstTimeVolView

Keep track of whether we're switching to the volume renderer for the first time.

flythruControl

private JPanelVirtualEndoscopySetup flythruControl

Fly through setup control panel.

flythruMoveControl

private JPanelFlythruMove flythruMoveControl

Fly through movement control panel.

flythruMovePanel

private JPanel flythruMovePanel

View panel contains the fly thru control panel.

flythruOptions

private FlythruRender.SetupOptions flythruOptions

Fly through options.

flythruPanel

private JPanel flythruPanel

Fly through panel.

flythruRender

private FlythruRender flythruRender

Reference to fly through renderer.

flythruSurfaceButton

private JButton flythruSurfaceButton

Surface load button.

flythruTabVector

private Vector flythruTabVector

DOCUMENT ME!

flyThruToolbar

private JToolBar flyThruToolbar

Flythru toolbar.

histoLUTPanel

private JPanel histoLUTPanel

Control panel for the surface renderer.

imageAOriginal

private ModelImage imageAOriginal

Reference to the imageA original copy.

imageOrientation

private int imageOrientation

Image orientation: coronal, sagittal, axial, unknown.

imagePanel

private JPanel imagePanel

The image panel to hold one Canvas3D.

intensityDialog

private JDialogIntensityPaint intensityDialog

DOCUMENT ME!

isBrainsurfaceFlattenerEnable

private boolean isBrainsurfaceFlattenerEnable

Indicate if the brainsurface flattener render is enabled from the resample dialog or not.

isEndoscopyEnable

private boolean isEndoscopyEnable

Indicate if the fly through render is enabled from the resample dialog or not.

isRayCastEnable

private boolean isRayCastEnable

Indicate if the raycast render is enabled from the resample dialog or not.

isShearWarpEnable

private boolean isShearWarpEnable

Indicate if the shear warp render is enabled from the resample dialog or not.

isSurfaceRenderEnable

private boolean isSurfaceRenderEnable

Indicate if the surface render is enabled from the resample dialog or not.

isSurfaceViewEnable

private boolean isSurfaceViewEnable

Indicate if the surface view is enabled from the resample dialog or not.

leftPanelRenderMode

private int leftPanelRenderMode

The left panel renderer mode.

lightPanel

private JPanel lightPanel

DOCUMENT ME!

m_akPlaneRender

private PlaneRender[] m_akPlaneRender

The three slice views displayed as texture-mapped polygons:.

m_kBrainsurfaceFlattenerPanel

private JPanel m_kBrainsurfaceFlattenerPanel

Control panels for the Brainsurface Flattener:.

m_kGeodesicPanel

private JPanel m_kGeodesicPanel

Control panel for drawing geodesic curves.

m_kSculptPanel

private JPanel m_kSculptPanel

Control panel for volume sculpting.

maxPanelWidth

private int maxPanelWidth

The max width of the control panels.

menuBar

private JMenuBar menuBar

Menu bar.

mousePanel

private JPanel mousePanel

DOCUMENT ME!

opacityDialog

private JDialogOpacityControls opacityDialog

DOCUMENT ME!

opacityPanel

private JPanel opacityPanel

DOCUMENT ME!

paddingImageA

private ModelImage paddingImageA

Padding imageA with blank images feeding.

paddingImageB

private ModelImage paddingImageB

Padding imageB with blank images feeding.

paintGrowDialog

private JDialogPaintGrow paintGrowDialog

Control panels of the triplanar view.

panelHistogram

private JFrameHistogram panelHistogram

LUT control panel of the gray scale image.

parallelButton

private JToggleButton parallelButton

Rendering parallel rotation button.

probePanel

private JPanel probePanel

DOCUMENT ME!

radioCOMPOSITE

private JRadioButton radioCOMPOSITE

Radio button of the COMPOSITE mode option.

radioCOMPOSITEShear

private JRadioButton radioCOMPOSITEShear

Radio button of the COMPOSITE mode option.

radioMIP

private JRadioButton radioMIP

Radio button of the MIP mode option.

radioMIPShear

private JRadioButton radioMIPShear

Radio button of the MIP mode option.

radioSURFACE

private JRadioButton radioSURFACE

Radio button of the SURFACE mode option.

radioSURFACEFAST

private JRadioButton radioSURFACEFAST

Radio button of the SURFACE mode option.

radioSURFACEShear

private JRadioButton radioSURFACEShear

Radio button of the SURFACE mode option.

radioSurrenderCOMPOSITE

private JRadioButton radioSurrenderCOMPOSITE

Radio button of the surface render composite mode.

radioSurrenderLIGHT

private JRadioButton radioSurrenderLIGHT

Radio button of the surface render lighting mode.

radioXRAY

private JRadioButton radioXRAY

Radio button of the XRAY mode option.

radioXRAYShear

private JRadioButton radioXRAYShear

Radio button of the XRAY mode option.

raisedbevel

private Border raisedbevel

Panel Border view.

loweredbevel

private Border loweredbevel

Panel Border view.

compound

private Border compound

Panel Border view.

redBorder

private Border redBorder

Panel Border view.

etchedBorder

private Border etchedBorder

Panel Border view.

pressedBorder

private Border pressedBorder

Panel Border view.

raycastCameraPanel

private JPanel raycastCameraPanel

DOCUMENT ME!

raycastOptionsPanel

private JPanel raycastOptionsPanel

Control panels for the raycast render.

raycastRender

private VolumeRendererRayCast raycastRender

DOCUMENT ME!

raycastTabVector

private Vector raycastTabVector

DOCUMENT ME!

rayCastToolBar

private JToolBar rayCastToolBar

Raycast toolbar.

resampleDialog

private JDialogVolViewResample resampleDialog

Reference to resample dialog, use to null out the resample dialog in this frame.

rfaButton

private JButton rfaButton

Button for RFA.

rfaSeparator

private JButton rfaSeparator

RFA separator.

rightPane

private JSplitPane rightPane

The view pane that contains the image view and tri-planar view panels.

rightPanelRenderMode

private int rightPanelRenderMode

The right panel renderer mode.

screenWidth

private int screenWidth

Screen width, screen height.

screenHeight

private int screenHeight

Screen width, screen height.

sculptHeight

private int sculptHeight

Sculpt region height.

sculptWidth

private int sculptWidth

Sculpt region width.

shearwarpCameraPanel

private JPanel shearwarpCameraPanel

DOCUMENT ME!

shearwarpOptionsPanel

private JPanel shearwarpOptionsPanel

Control panels for the shearwarp render.

shearwarpRender

private VolumeRendererShearWarp shearwarpRender

DOCUMENT ME!

shearwarpTabVector

private Vector shearwarpTabVector

DOCUMENT ME!

shearWarpToolBar

private JToolBar shearWarpToolBar

Shearwarp toolbar.

slicePanel

private JPanel slicePanel

DOCUMENT ME!

storeTabbedPaneIndex

private int storeTabbedPaneIndex

Previoius tab index recorder.

surfacePanel

private JPanel surfacePanel

DOCUMENT ME!

surRender

private SurfaceRender surRender

Three types of renderer.

surView

private SurfaceView surView

Surface View reference

surTabVector

private Vector surTabVector

For each render, use the vector to store the currently active tabs.

toolbarBuilder

private ViewToolBarBuilder toolbarBuilder

Toolbar builder reference.

triImagePanel

private JPanel triImagePanel

Tri image planar render panels.

unparallelButton

private JToggleButton unparallelButton

Rendering unparallel rotaion button.

viewPanel

private JPanel viewPanel

DOCUMENT ME!

viewToolBar

private JToolBar viewToolBar

The top one render view switch toolbar.

volToolBar

private JToolBar volToolBar

Surface Render toolbar.

Constructor Details

ViewJFrameVolumeView

public ViewJFrameVolumeView(ModelImage _imageA,
 ModelLUT LUTa,
 ModelRGB _RGBTA,
 ModelImage _imageB,
 ModelLUT LUTb,
 ModelRGB _RGBTB,
 int _leftPanelRenderMode,
 int _rightPanelRenderMode,
 JDialogVolViewResample _resampleDialog)

Make a volume rendering frame, which contains the toolbars on the top, control panel on the left, the volume rendering panel on the right, and the three orthogonal view ( axial, sagittal, coronal, views) on the bottom right.

Parameters:

_imageA - First image to display

LUTa - LUT of the imageA (if null grayscale LUT is constructed)

_RGBTA - RGB table of imageA

_imageB - Second loaded image

LUTb - LUT of the imageB

_RGBTB - RGB table of imageB

_leftPanelRenderMode - shear warp render mode enabled or not

_rightPanelRenderMode - volume rendering panel render mode ( Raycast, shearwarp, etc).

_resampleDialog - resample dialog reference.

Method Details

getRendererProgressBar

public static final JProgressBar getRendererProgressBar()

Retrieve the progress bar used in the volume renderer (the one in the upper right hand corner).

Returns:

the volume renderer progress bar

actionPerformed

public void actionPerformed(ActionEvent event)

Calls various methods depending on the action.

Specified by:

actionPerformed in interface ActionListener

Specified by:

actionPerformed in class ViewJFrameBase

Parameters:

event - Event that triggers function.

addAttachedSurfaces

public void addAttachedSurfaces()

Add any attached surfaces the current image has in its file info (if the file info is in the xml format).

addBranch

public void addBranch(javax.media.j3d.BranchGroup kBranch,
 ModelTriangleMesh kMesh,
 javax.vecmath.Point3f kCenter)

Updates the surRender -- adds a BranchGroup to the main Display.

Parameters:

kBranch - BranchGroup branch group

kMesh - ModelTriangleMesh surface mesh

kCenter - Point3f center of mass

addFlightPath

public void addFlightPath()

Updates the surRender to display the flythru flight path from the flythruRender.

addSurface

public void addSurface(String dir,
 File file)

Adding surface to the 3D texuture volume.

Parameters:

dir - surface file direcotry

file - surface file name

buildBrainsurfaceFlattener

public void buildBrainsurfaceFlattener()

Build the Brainsurface Flattener panel:

buildCameraPanel

public void buildCameraPanel()

Build the camera control panel for the surface render.

buildClipPanel

public void buildClipPanel()

Build the clipping control panel for the surface render.

buildDisplayPanel

public void buildDisplayPanel()

Build the display control panel for the surface render.

buildFlythruMovePanel

public void buildFlythruMovePanel()

Build the flythru move control panel.

buildFlythruPanel

public void buildFlythruPanel()

Build the flythru control panel.

buildGeodesic

public void buildGeodesic()

Build the Geodesic control panel.

buildHistoLUTPanel

public void buildHistoLUTPanel()

The histogram control panel of the lookup table.

buildLabelPanel

public void buildLabelPanel()

The label panel of the x, y, z slider position.

Overrides:

buildLabelPanel in class ViewJFrameBase

buildLightPanel

public void buildLightPanel()

Build the light control panel for the surface render.

buildMousePanel

public void buildMousePanel()

Build the mouse control panel for the raycast render.

buildOpacityPanel

public void buildOpacityPanel()

Build the volume opacity control panel for the surface render.

buildProbePanel

public void buildProbePanel()

Build the adding surface control panel for the surface render.

buildRayCastCameraPanel

public void buildRayCastCameraPanel()

Build the camera control panel for the raycast render.

buildRayCastOptions

public void buildRayCastOptions()

Build the view control panel for the raycast render.

buildSculpt

public void buildSculpt()

Build the Sculpturing control panel.

buildShearWarpCameraPanel

public void buildShearWarpCameraPanel()

Build the camera control panel for the shearwarp render.

buildShearWarpOptions

public void buildShearWarpOptions()

Build the view control panel for the shearwarp render.

buildSlicePanel

public void buildSlicePanel()

Build the slices control panel for the surface render.

buildSurfacePanel

public void buildSurfacePanel()

Build the adding surface control panel for the surface render.

buildViewPanel

public void buildViewPanel()

Build the view control panel for the surface render.

calcShearWarpImage

public void calcShearWarpImage(ModelImage _imageA,
 ModelImage _imageB)

Transform the image into shear warp image, which has the same resolution.

Parameters:

_imageA - the reference to image A.

_imageB - the reference to image B.

componentResized

public void componentResized(ComponentEvent event)

Method called when a component resize event is generated. This method snaps the size of the frame and pagePanel to the nearest row, column sizing (so the gridRow and gridColumn and page layout may change).

Specified by:

componentResized in interface ComponentListener

Overrides:

componentResized in class ViewJFrameBase

Parameters:

event - frame resize event

constructRenderers

public void constructRenderers()

Construct the volume rendering methods based on the choices made from the resample dialog. This method is called by the Resample dialog.

disableTargetPointPicking

public void disableTargetPointPicking()

Disable target point for the RFA probe from within the plane renderer.

disposeLocal

public void disposeLocal(boolean flag)

Dispose memory.

Parameters:

flag - call super dispose or not

doPadding

public void doPadding(int[] extents,
 int[] volExtents)

Insert the blank images to the end of image. Padding the image to power of 2.

Parameters:

extents - int[] original extents

volExtents - int[] padding to power of 2 extents.

doResample

public void doResample(int[] volExtents,
 float[] newRes,
 boolean forceResample,
 int nDim,
 int iFilterType)

Resample the images to power of 2.

Parameters:

volExtents - resampled volume extents

newRes - new resampled resolution

forceResample - resampled or not

nDim - number of dimensions

iFilterType - type of sample filter, may be one of 7 different filters: TriLinear Interpolation, NearestNeighbor, CubicBSpline, QuadraticBSpline, CubicLagragian, QuinticLagragian, HepticLagragian, or WindowedSinc (see AlgorithmTransform.java).

drawBrainSurfaceFlattenerPoint

public void drawBrainSurfaceFlattenerPoint(javax.vecmath.Point3f kStart,
 int[] aiIndex,
 int iWhich)

Draws the point selected on the Mesh for the brainsurfaceFlattener.

Parameters:

kStart - Ruida please add comment

aiIndex - Ruida please add comment

iWhich - Ruida please add comment

drawRFAPoint

public void drawRFAPoint(javax.vecmath.Point3f kPoint)

Called from the PlaneRender class when a new Probe Entry Point has been selected. The point is passed into each PlaneRender class for display, and to the SurfaceRender class for display

Parameters:

kPoint - target point position

enableTargetPointPicking

public void enableTargetPointPicking()

Enable target point for the RFA probe from within the plane renderer.

getBlendValue

public int getBlendValue()

Get the imageA and imageB blending value from the PlaneRender.

Returns:

blendValue blender slider value.

getControls

public ViewControlsImage getControls()

Required by the parent super class, do nothing.

Specified by:

getControls in class ViewJFrameBase

Returns:

null

getHistoLUTActiveImage

public ModelImage getHistoLUTActiveImage()

Returns which image is active in the HistoLUT -- either imageA or imageB. Called by the PlaneRenderer object to determine which LUT to update based on dragging the right-mouse in the PlaneRender window:

Returns:

ModelImage, either imageA or imageB, depending on which is selected in the HistoLUT

getHistoRGBActiveImage

public ModelImage getHistoRGBActiveImage()

Returns which image is active in the HistoRGB -- either imageA or imageB. Called by the PlaneRenderer object to determine which LUT to update based on dragging the right-mouse in the PlaneRender window:

Returns:

ModelImage, either imageA or imageB, depending on which is selected in the HistoLUT

getImageA

public ModelImage getImageA()

Get the image A reference.

Specified by:

getImageA in class ViewJFrameBase

Returns:

imageA model image A reference.

getImageB

public ModelImage getImageB()

Get the imageB reference.

Specified by:

getImageB in class ViewJFrameBase

Returns:

imageB model image B reference.

getImageOriginal

public ModelImage getImageOriginal()

Get a reference to the original image we passed into the renderer from MIPAV (non-cloned).

Returns:

the original image

getLUTDialog

public JPanelHistoLUT getLUTDialog()

Deprecated.

Get the LUT panel (only should be used with grayscale images).

Returns:

the histo LUT panel

getHistogramDialog

public JFrameHistogram getHistogramDialog()

getProbeDialog

public JPanelProbe getProbeDialog()

Return the rfa probe panel.

Returns:

the rfa probe panel

getRGBDialog

public JPanelHistoRGB getRGBDialog()

Deprecated.

Get the RGB panel (only should be used with color images).

Returns:

the histo RGB panel

getSegmentationImage

public ModelImage getSegmentationImage()

Return the segmentation region map image which contains info on where the vascualture, etc are located.

Returns:

(vessel, etc) segmentation image

getViewPanel

public JSplitPane getViewPanel()

Return the image panel.

Returns:

JSplitPane

insertFlythruTab

public void insertFlythruTab(String _name,
 JPanel _panel)

Insert tab into the flythru tab list ( flythru render ) for backup.

Parameters:

_name - flythru render control panel name

_panel - flythru render control panel

insertRaycastTab

public void insertRaycastTab(String _name,
 JPanel _panel)

Insert tab into the raycast tab list ( raycast render ) for backup.

Parameters:

_name - raycast render control panel name

_panel - raycast render control panel

insertShearwarpTab

public void insertShearwarpTab(String _name,
 JPanel _panel)

Insert tab into the shear warp tab list ( shear warp render ) for backup.

Parameters:

_name - shear warp render control panel name

_panel - shear warp render control panel

insertSurfaceTab

public void insertSurfaceTab(String _name,
 JPanel _panel)

Insert tab into the surface tab list ( SurfaceRender ) for backup.

Parameters:

_name - surface render control panel name

_panel - surface render control panel

insertTab

public void insertTab(String _name,
 JPanel _panel)

Insert the new tab into the current visible tab list.

Parameters:

_name - control panel name

_panel - control panel

isBrainSurfaceFlattenerPickEnabled

public boolean isBrainSurfaceFlattenerPickEnabled()

Returns the pick enabled state of the brainsurfaceFlattener.

Returns:

flag brain surface pickable or not.

isGeodesicEnable

public boolean isGeodesicEnable()

Check whether the Geodesic drawing is enabled or not.

Returns:

boolean true Geodesic drawing enabled, false Geodesic disable.

itemStateChanged

public void itemStateChanged(ItemEvent event)

Sets the flags for the getOptionses and resets labels.

Specified by:

itemStateChanged in interface ItemListener

Parameters:

event - Event that triggered this function.

mouseClicked

public void mouseClicked(MouseEvent e)

Handle the double mouse click event when the use swith between the dual image panel view.

Specified by:

mouseClicked in interface MouseListener

Parameters:

e - MouseEvent

mouseEntered

public void mouseEntered(MouseEvent e)

Methods do nothing, implemented mouseListener.

Specified by:

mouseEntered in interface MouseListener

Parameters:

e - MouseEvent

mouseExited

public void mouseExited(MouseEvent e)

Methods do nothing, implemented mouseListener.

Specified by:

mouseExited in interface MouseListener

Parameters:

e - MouseEvent

mousePressed

public void mousePressed(MouseEvent e)

Methods do nothing, implemented mouseListener.

Specified by:

mousePressed in interface MouseListener

Parameters:

e - MouseEvent

mouseReleased

public void mouseReleased(MouseEvent e)

Methods do nothing, implemented mouseListener.

Specified by:

mouseReleased in interface MouseListener

Parameters:

e - MouseEvent

removeBranch

public void removeBranch(javax.media.j3d.BranchGroup kBranch,
 boolean bRemoveMesh)

Updates the surRender -- removes a BranchGroup to the main Display.

Parameters:

kBranch - BranchGroup surface branch group reference.

bRemoveMesh - boolean flag to remove the surface mesh or not

removeControls

public void removeControls()

Required by the parent super class, do nothing.

Specified by:

removeControls in class ViewJFrameBase

removeProbeLine

public void removeProbeLine()

Remove the red line showing where the probe will pass through. Used when changing the probe target point through the tri-images.

resetAxisX

public void resetAxisX()

Reset image volume orieint along X axis.

resetAxisY

public void resetAxisY()

Reset image volume orieint along Y axis.

resetImage

public void resetImage()

Reset image volume orieint along Z axis.

setActiveImage

public void setActiveImage(int active)

Required by the parent super class, do nothing.

Specified by:

setActiveImage in class ViewJFrameBase

Parameters:

active - int

setAlphaBlend

public void setAlphaBlend(int value)

Required by the parent super class, do nothing.

Specified by:

setAlphaBlend in class ViewJFrameBase

Parameters:

value - DOCUMENT ME!

setControls

public void setControls()

Required by the parent super class, do nothing.

Specified by:

setControls in class ViewJFrameBase

setEnabled

public void setEnabled(boolean flag)

Do nothing methods, just extend the ViewJframeBase.

Specified by:

setEnabled in class ViewJFrameBase

Parameters:

flag - DOCUMENT ME!

setFlythruColor

public void setFlythruColor(Color _color)

Set the flythru surface color.

Parameters:

_color - ModelLUT table

setImageB

public void setImageB(ModelImage _imageB)

Required by the parent super class, do nothing.

Specified by:

setImageB in class ViewJFrameBase

Parameters:

_imageB - image to set the frame to

setImageOriginal

public void setImageOriginal(ModelImage img)

Set the reference to the original image we passed into the renderer from MIPAV (non-cloned).

Parameters:

img - the original image

setLUTa

public void setLUTa(ModelLUT LUT)

Accessor that sets the LUT.

Overrides:

setLUTa in class ViewJFrameBase

Parameters:

LUT - the LUT

setLUTb

public void setLUTb(ModelLUT LUT)

Accessor that sets the LUT.

Overrides:

setLUTb in class ViewJFrameBase

Parameters:

LUT - the LUT

setMaterialShininess

public void setMaterialShininess(float value)

Set material ( texture or voxels ) shininess value.

Parameters:

value - float

setPaintBitmapSwitch

public void setPaintBitmapSwitch(boolean paintBitmapSwitch)

Required by the parent super class, do nothing.

Specified by:

setPaintBitmapSwitch in class ViewJFrameBase

Parameters:

paintBitmapSwitch - boolean

setPathPosition

public void setPathPosition(javax.vecmath.Point3f kPosition,
 javax.vecmath.Point3f kScaledPosition)

Called when the view position changes in the FlyThruRenderer, updates the position representation in the Slice views:

Parameters:

kPosition - center position.

kScaledPosition - position of the flythru view point along the flythru path.

setPositionLabels

public void setPositionLabels(WildMagic.LibFoundation.Mathematics.Vector3f position)

Sets the position labels.

Parameters:

position - the slice positions in FileCoordinates.

setRGBTA

public void setRGBTA(ModelRGB RGBT)

Sets the RGB table for ARGB image A.

Specified by:

setRGBTA in class ViewJFrameBase

Parameters:

RGBT - RGB table

setRGBTB

public void setRGBTB(ModelRGB RGBT)

Sets the RGB table for image B.

Specified by:

setRGBTB in class ViewJFrameBase

Parameters:

RGBT - RGB table

setRightPanelCanvas

public void setRightPanelCanvas()

Update the right panel when finish loading Endoscopy images.

setSegmentationImage

public void setSegmentationImage(ModelImage img)

Set the image which we can check to see if the probe is hitting anything important (such as vessels, etc).

Parameters:

img - segmentation image

setSlice

public void setSlice(int slice)

Required by the parent super class, do nothing.

Specified by:

setSlice in interface ViewImageUpdateInterface

Parameters:

slice - int

setSliceFromPlane

public void setSliceFromPlane(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)

Sets the position of the slices in the SurfaceRender and PlaneRender objects. Called from the PlaneRender class.

Parameters:

center - the new slice positions in FileCoordinates

setSliceFromSurface

public void setSliceFromSurface(WildMagic.LibFoundation.Mathematics.Vector3f center)

Sets the position of the slices in the PlaneRender. Called from the SurfaceRender class.

Parameters:

center - the new slice positions in FileCoordinates

setSliceHairColor

public void setSliceHairColor(int iView,
 Color color)

Sets the color for the PlaneRender iView (AXIAL, SAGITTAL, CORONAL) slice.

Parameters:

iView - (AXIAL, SAGITTAL, CORONAL)

color - the new axis color attribute.

setTimeSlice

public void setTimeSlice(int slice)

Required by the parent super class, do nothing.

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Parameters:

slice - int

setTitle

public void setTitle()

Set the title of the frame with the image name of slice location.

Specified by:

setTitle in class ViewJFrameBase

stateChanged

public void stateChanged(ChangeEvent event)

Switch between slices control button and surface render button of the surface toolbar.

Specified by:

stateChanged in interface ChangeListener

Overrides:

stateChanged in class ViewJFrameBase

Parameters:

event - ChangeEvent

switchTabList

public void switchTabList(String command)

Update the tabbed pane when switch view buttons in the View toolbar.

Parameters:

command - command of the renderer's view toolbar button click.

updateImageExtents

public boolean updateImageExtents()

Update image extends from the ModelImage. Now, disabled.

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Specified by:

updateImageExtents in class ViewJFrameBase

Returns:

DOCUMENT ME!

See Also:

• ViewImageUpdateInterface

updateImages

public boolean updateImages()

Update images in surface render, raycast render and shearwarp render.

Specified by:

updateImages in interface ViewImageUpdateInterface

Returns:

boolean boolean confirming successful update

updateImages

public boolean updateImages(boolean forceShow)

This methods calls corresponding render to update images without LUT changes.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

forceShow - forces show to reimport image and calc. java image

Returns:

boolean confirming successful update

updateImages

public boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean forceShow,
 int interpMode)

This methods calls corresponding render to update images with LUT changes.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

forceShow - forces show to reimport image and calc. java image

interpMode - image interpolation method (Nearest or Smooth)

Returns:

boolean confirming successful update

updateProbePos

public void updateProbePos()

The navigation mode update the probe position in 3D texture volume. Not used now. Might be used later on.

updateSliceData

public void updateSliceData()

Causes the PlaneRender objects to update the texture maps when the underlying ModelImage changes.

updateSurRenderWinlevel

public void updateSurRenderWinlevel(boolean flag)

Hack. Update the the surface render win-level from the plane renderer.

Parameters:

flag - true update win-level, false not update.

volumeRepaint

public void volumeRepaint()

Repaint the volume.

windowClosing

public void windowClosing(WindowEvent event)

Closes window and disposes of frame and component.

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class ViewJFrameBase

Parameters:

event - Event that triggered function

buildMenu

protected JMenuBar buildMenu()

Builds menus for the tri-planar view.

Returns:

DOCUMENT ME!

buildToolbars

protected void buildToolbars()

Builds the toolbars for the tri-planar view.

configureFrame

protected void configureFrame()

Constructs main frame structures for image canvas.

finalize

protected void finalize()
                 throws Throwable

Cleans up memory from gc.

Overrides:

finalize in class ViewJFrameBase

Throws:

Throwable - DOCUMENT ME!

addToolbar

private void addToolbar()

Add surface volume renderer control buttons.

buildFlyThruToolbar

private void buildFlyThruToolbar()

Build the fly through toolbar.

buildRayCastToolbar

private void buildRayCastToolbar()

Build the raycast toolbar.

buildShearWarpToolbar

private void buildShearWarpToolbar()

Build the shearwarp toolbar.

buildSurRenderToolbar

private void buildSurRenderToolbar()

Build the surface render toolbar.

buildSurfaceViewToolbar

private void buildSurfaceViewToolbar()

The the top one volume view toolbar.

buildViewToolbar

private void buildViewToolbar()

The the top one volume view toolbar.

enableDualPanelRender

private void enableDualPanelRender()

Enable dual panel renders.

enableFlyThruRender

private void enableFlyThruRender()

Enable the fly through frame layout.

enableShearWarpRender

private void enableShearWarpRender()

Enable the shear warp render.

enableSurfaceRender

private void enableSurfaceRender()

Enable surface render.

enableVolumeRender

private void enableVolumeRender()

Enable volume render.

resetLUTMinMax

private void resetLUTMinMax(ModelImage image,
 ModelLUT lut)

Calculate the LUT from the resampled image.

Parameters:

image - ModelImage reference

lut - ModelLUT reference

resizePanel

private void resizePanel()

Method that resizes the frame and adjusts the rows, columns as needed.

set3DModelPosition

private void set3DModelPosition(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)

Sets the 3DModel position label.

Parameters:

position - DOCUMENT ME!

setPatientSlicePosition

private void setPatientSlicePosition(WildMagic.LibFoundation.Mathematics.Vector3f position)

Sets the PatientSlice position label.

Parameters:

position - DOCUMENT ME!

setRFAToolbarVisible

private void setRFAToolbarVisible(boolean flag)

Set the RFA button visible or not.

Parameters:

flag - Set the RFA button visible or not

setRenderPerspective

public void setRenderPerspective(boolean bEnable)