java.lang.Object
- java.awt.Component
- - java.awt.Canvas
  - - javax.media.j3d.Canvas3D
    - - gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
      - gov.nih.mipav.view.renderer.J3D.RenderViewBase
        
        gov.nih.mipav.view.renderer.J3D.surfaceview.plotterview.SurfacePlotter

All Implemented Interfaces:

com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback, ViewImageUpdateInterface, java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener
```
public class SurfacePlotter
extends RenderViewBase
implements java.awt.event.MouseListener
```
Frame that holds the surface plotter. The surface plotter takes a 2D image and renders it into a 3D object that is similar to a relief map. Higher intensities are peaks, lower intensities are valleys. The colors are the same as those used in the LUT, and when the LUT for the image is updated, so is the LUT for the plotted surface. The image itself is also a part of the scene, and it can be slid along so that the peaks of the intensity levels match the image.

See Also:

ViewJComponentSurface, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase
  RenderViewBase.Matrix
- Nested classes/interfaces inherited from class java.awt.Canvas
  java.awt.Canvas.AccessibleAWTCanvas
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private JPanelSurfaceBox`	`boxDialog`	Dialog for recording and playing back mouse events.
`private ViewJComponentSurface`	`componentImageXY`	Main component found in this frame.
`private javax.swing.JPanel`	`controlPanel`	the control panel that hold the z slider.
`private int`	`current`	Current event vector index.
`private int[]`	`extents`	Extents of image.
`private javax.media.j3d.BranchGroup`	`imageBranch`	Branch parent of the image in the scene, needed so image can be made invisible when another surface is loaded.
`private boolean`	`isVisible`	Flag indicating if the image is currently visible.
`private javax.swing.JCheckBoxMenuItem`	`itemLine`	Check box menu item indicating if surface should be in line mode or full mode.
`private javax.swing.JLabel`	`label1`	Label for slider, "1".
`private javax.swing.JLabel`	`label100`	Label for slider, "100".
`private javax.swing.JLabel`	`label50`	Label for slider, "50".
`private javax.swing.JLabel`	`labelZ`	Label that says "Z (1-100)".
`private ModelLUT`	`LUTa`	LUT that dictates how the vertices of the quad mesh are colored.
`private javax.swing.JPanel`	`mainPanel`	The main control panel.
`private JPanelMousePlotter`	`mouseDialog`	Mouse recorder dialog associated with surface plotter.
`private com.sun.j3d.utils.behaviors.mouse.MouseRotate`	`mouseRotateBehavior`	Mouse Rotate behavior.
`private com.sun.j3d.utils.behaviors.mouse.MouseTranslate`	`mouseTranslateBehavior`	Mouse Translate behavior.
`private com.sun.j3d.utils.behaviors.mouse.MouseZoom`	`mouseZoomBehavior`	Mouse Zoom behavior.
`private javax.vecmath.Point3d`	`myEyePoint`	Initial center viewing point of the image.
`private javax.media.j3d.TransformGroup`	`objTransXY`	Transform group guiding how image is displayed.
`private javax.swing.JMenuBar`	`openingMenuBar`	Menu bar.
`private javax.swing.JPanel`	`panelToolbar`	Panel that holds the toolbars.
`private javax.media.j3d.Transform3D`	`parallelScaleT3D`	Transformation matrix.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private boolean`	`setSliderFlag`	Flag to indicate the first time slider name changes.
`private int`	`slice`	Current slice of 3D image, used to figure out XY plane to plot.
`private MouseEventVectorPlotter`	`sliderEvents`	Slider events used by the mouse recorder.
`private javax.swing.JSlider`	`sliderFrame`	Slider for frame/slice of image.
`private javax.swing.JSlider`	`sliderZ`	3, 1-100%, dictating where the image in the surface should be displayed.
`private javax.media.j3d.Transform3D`	`t3d_XY_t`	Actual transform of the image.
`private javax.swing.JTextField`	`textZ`	Text field displaying the percentage of the slider.
`private javax.media.j3d.TextureUnitState[]`	`texUnitStateBXY`	Texture creating appearance for the "back" of the image.
`private javax.media.j3d.TextureUnitState[]`	`texUnitStateFXY`	Texture creating appearance for the "front" of the image.
`private javax.swing.JCheckBox`	`visibleBox`	Check box for whether or not the image should be visible.
`private float`	`xRes`	X and Y resolution.
`private float`	`yRes`	X and Y resolution.
`private int`	`zSlice`	Z slice, which image of 1-100 are we showing.

Fields inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase
background, bounds, boxFrame, canvas, captureFrame, captureImage, config, displayMode, IMAGE_A, IMAGE_B, imageA, imageB, LUTb, objBehaviorBG, objBoxFrameBG, objRootBG, rotationAngle, rotationAxis, rotationControlPanel, rotationTimes, rotationTotal, sceneRootTG, transRotation, transRotationMatrix, triPlanarViewBG, universe, viewPanel

Fields inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_iAccumulatedFrameCount, m_iFrameCount, m_iMaxTimer, m_iTimer

Fields inherited from class javax.media.j3d.Canvas3D
FIELD_ALL, FIELD_LEFT, FIELD_RIGHT

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback
ROTATE, TRANSLATE, ZOOM

Constructor Summary

Constructors
Constructor	Description
`SurfacePlotter(ModelImage _imageA, ModelLUT _LUTa, int slice, java.awt.GraphicsConfiguration _config)`	Makes a frame and puts the image and the plotted quad mesh into it.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Calls various methods depending on the action: Load in menu - calls a file chooser and loads the quad surface Save in menu - calls a file chooser and saves the quad surface Exit in menu - exits this frame View in menu - opens view dialog Mouse in menu - opens mouse recorder dialog Line checkbox in menu - toggles polygon mode between fill and line Visible checkbox on panel - toggles image on and off
`void`	`autoCapture()`	Override the parent autoCapture method to capture MIP image volume.
`private javax.swing.JPanel`	`buildControlPanel()`	Panel that has a slider for the image.
`private void`	`buildMenu()`	Builds menus for the frame.
`private void`	`buildToolBar()`	Builds the toolbar for the volume render frame.
`private void`	`configureFrame()`	Constructs main frame structures for the surface.
`private void`	`createImageSceneGraph()`	Creates the scene graph.
`void`	`disableCamera()`	Set the captureFrame to null.
`void`	`dispatchSavedEvent(java.util.EventObject event)`	Dispatches event to appropriate object.
`void`	`disposeLocal()`	Dispose memory.
`void`	`finalize()`	Finalize to free memory.
`JPanelCamera`	`getCameraPanel()`	Get the camera control panel.
`javax.swing.JPanel`	`getControlPanel()`	Get the main control panel.
`ModelImage`	`getImageA()`	Accessor that returns the reference to imageA.
`ModelImage`	`getImageB()`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`JPanelMousePlotter`	`getMouseControl()`	Return mouseDialog from parent frame.
`int`	`getMouseMode()`	Gets the mouse pointer mode - standard or fly - from the view dialog.
`JPanelMousePlotter`	`getMousePanel()`	Get the mouse recorder control panel.
`int`	`getSampleSize()`	Get the sample factor.
`java.lang.Object`	`getSceneState()`	Gets the current scene state, in terms of what number the slice is on and if it is visible.
`JPanelSurfaceBox`	`getSurfaceBoxPanel()`	Get the surface box control ???
`JPanelView`	`getViewPanel()`	Get the view control panel.
`void`	`hideBoxFrame()`	Makes the box frame invisible.
`private void`	`load()`	Calls a file chooser then loads the quad mesh from that file.
`private javax.swing.JButton`	`makeSeparator()`	Makes a separator for the use in the toolbars.
`void`	`mouseClicked(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseEntered(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseExited(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mousePressed(java.awt.event.MouseEvent event)`	Unchanged.
`void`	`mouseReleased(java.awt.event.MouseEvent event)`	Used in MouseRecorder to stop one series of slide moves.
`void`	`resample(java.lang.String selectedValue)`	Call by the plotter render frame to resample.
`void`	`resetMouseDialog()`	Reset mouseDialog box.
`void`	`rotateImage()`	Override the parent rotateImage method to rotate the MIP image volume.
`private void`	`save()`	Calls a file chooser then writes the quad mesh to that file.
`void`	`setAlphaBlend(int value)`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`void`	`setEnabled(boolean flag)`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`void`	`setGUI(java.lang.Object scene)`	Sets the GUI components to their proper state before the action is dispatched from the player.
`void`	`setLUTa(ModelLUT LUT)`	Accessor that sets the LUT.
`void`	`setMouseMode(int mode)`	Sets the mouse pointer mode - standard or fly - in the view dialog.
`void`	`setPolygonMode(boolean flag)`	Set the polygonal render mode.
`void`	`setRenderPerspective(boolean bEnable)`	Enable perspective projection rendering; otherwise use orthographic projection.
`void`	`setRGBTA(ModelRGB RGBT)`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`void`	`setRGBTB(ModelRGB RGBT)`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`void`	`setRotationAngle(int value)`	Set the rotation angel for the camera control.
`void`	`setRotationAxis(int axis)`	Set the rotation axis for the camera control.
`void`	`setSceneState(java.lang.Object scene)`	Sets the scene state appropriately.
`void`	`setSlice(int slice)`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`private void`	`setSliderEnabled(boolean flag)`	Sets the slider, the label "Z (1-100)" and the labels underneath the slider to enabled or disabled, depending on flag.
`void`	`setTimeSlice(int slice)`	Does nothing but must instantiate for this to be a subclass of RenderViewBase.
`private void`	`setupEye()`	Set up the center point of the red line boxframe.
`void`	`showBoxFrame()`	Makes the box frame visible.
`void`	`stateChanged(javax.swing.event.ChangeEvent e)`	Sets where image is in scene based on knob along slider.
`void`	`transformChanged(int type, javax.media.j3d.Transform3D transform)`	Does nothing but must instantiate for this to be a subclass of ViewJFrameSurface.
`private void`	`translateImage()`	DOCUMENT ME!
`boolean`	`updateImageExtents()`	This methods calls the componentImage's REPAINT method to redraw the screen.
`boolean`	`updateImages()`	This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
`boolean`	`updateImages(boolean forceShow)`	This methods calls the componentImage's update method to redraw the screen.
`boolean`	`updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)`	This methods calls the componentImage's update method to redraw the screen.
`private void`	`updateViewScreenScale(javax.media.j3d.Transform3D kTransform)`	This function calculates the scale factor for zooming in parallel projection.

Methods inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase
calcImageNormals, createBoxFrame, getBehaviorGroup, getBound, getBranchGroup, getCanvas, getNormals, getRGBTA, getRGBTB, getSceneRootTG, getSliderEvents, getTriPlanarViewBG, getUniverse, recordMouse, resetAxisX, resetAxisY, resetImage, setBackgroundColor, setBoxColor, writeImage, writeImageAuto

Methods inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D
GetTestFrameRate, MeasureTime, paint, postSwap, ResetTime, SetTestFrameRate, supportsTexture3D, update, UpdateFrameCount

Methods inherited from class javax.media.j3d.Canvas3D
addNotify, getBounds, getBounds, getCenterEyeInImagePlate, getDoubleBufferAvailable, getDoubleBufferEnable, getGraphics2D, getGraphicsContext3D, getHeight, getImagePlateToVworld, getInverseVworldProjection, getLeftEyeInImagePlate, getLeftManualEyeInImagePlate, getLocation, getLocation, getLocationOnScreen, getMonoscopicViewPolicy, getOffScreenBuffer, getOffScreenLocation, getOffScreenLocation, getPhysicalHeight, getPhysicalWidth, getPixelLocationFromImagePlate, getPixelLocationInImagePlate, getPixelLocationInImagePlate, getRightEyeInImagePlate, getRightManualEyeInImagePlate, getSceneAntialiasingAvailable, getScreen3D, getSize, getSize, getStereoAvailable, getStereoEnable, getView, getVworldProjection, getVworldToImagePlate, getWidth, getX, getY, isOffScreen, isRendererRunning, isShadingLanguageSupported, postRender, preRender, queryProperties, removeNotify, renderField, renderOffScreenBuffer, setDoubleBufferEnable, setLeftManualEyeInImagePlate, setMonoscopicViewPolicy, setOffScreenBuffer, setOffScreenLocation, setOffScreenLocation, setRightManualEyeInImagePlate, setStereoEnable, startRenderer, stopRenderer, swap, waitForOffScreenRendering

Methods inherited from class java.awt.Canvas
createBufferStrategy, createBufferStrategy, getAccessibleContext, getBufferStrategy

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, deliverEvent, disable, disableEvents, dispatchEvent, doLayout, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAlignmentX, getAlignmentY, getBackground, getBaseline, getBaselineResizeBehavior, getColorModel, getComponentAt, getComponentAt, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeys, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getListeners, getLocale, getMaximumSize, getMinimumSize, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, invalidate, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusCycleRoot, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, layout, list, list, list, list, list, locate, location, lostFocus, minimumSize, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, paramString, postEvent, preferredSize, prepareImage, prepareImage, print, printAll, processComponentEvent, processEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeys, setFocusTraversalKeysEnabled, setFont, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setMixingCutoutShape, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle, validate

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - boxDialog
```
private JPanelSurfaceBox boxDialog
```
    Dialog for recording and playing back mouse events.
  - componentImageXY
```
private ViewJComponentSurface componentImageXY
```
    Main component found in this frame.
  - controlPanel
```
private javax.swing.JPanel controlPanel
```
    the control panel that hold the z slider.
  - current
```
private int current
```
    Current event vector index.
  - extents
```
private int[] extents
```
    Extents of image.
  - imageBranch
```
private javax.media.j3d.BranchGroup imageBranch
```
    Branch parent of the image in the scene, needed so image can be made invisible when another surface is loaded.
  - isVisible
```
private boolean isVisible
```
    Flag indicating if the image is currently visible.
  - itemLine
```
private javax.swing.JCheckBoxMenuItem itemLine
```
    Check box menu item indicating if surface should be in line mode or full mode.
  - label1
```
private javax.swing.JLabel label1
```
    Label for slider, "1".
  - label100
```
private javax.swing.JLabel label100
```
    Label for slider, "100".
  - label50
```
private javax.swing.JLabel label50
```
    Label for slider, "50".
  - labelZ
```
private javax.swing.JLabel labelZ
```
    Label that says "Z (1-100)".
  - LUTa
```
private ModelLUT LUTa
```
    LUT that dictates how the vertices of the quad mesh are colored.
  - mainPanel
```
private javax.swing.JPanel mainPanel
```
    The main control panel.
  - mouseDialog
```
private JPanelMousePlotter mouseDialog
```
    Mouse recorder dialog associated with surface plotter.
  - mouseRotateBehavior
```
private com.sun.j3d.utils.behaviors.mouse.MouseRotate mouseRotateBehavior
```
    Mouse Rotate behavior.
  - mouseTranslateBehavior
```
private com.sun.j3d.utils.behaviors.mouse.MouseTranslate mouseTranslateBehavior
```
    Mouse Translate behavior.
  - mouseZoomBehavior
```
private com.sun.j3d.utils.behaviors.mouse.MouseZoom mouseZoomBehavior
```
    Mouse Zoom behavior.
  - myEyePoint
```
private javax.vecmath.Point3d myEyePoint
```
    Initial center viewing point of the image.
  - objTransXY
```
private javax.media.j3d.TransformGroup objTransXY
```
    Transform group guiding how image is displayed.
  - openingMenuBar
```
private javax.swing.JMenuBar openingMenuBar
```
    Menu bar.
  - panelToolbar
```
private javax.swing.JPanel panelToolbar
```
    Panel that holds the toolbars.
  - parallelScaleT3D
```
private javax.media.j3d.Transform3D parallelScaleT3D
```
    Transformation matrix.
  - setSliderFlag
```
private boolean setSliderFlag
```
    Flag to indicate the first time slider name changes.
  - slice
```
private int slice
```
    Current slice of 3D image, used to figure out XY plane to plot.
  - sliderEvents
```
private MouseEventVectorPlotter sliderEvents
```
    Slider events used by the mouse recorder.
  - sliderFrame
```
private javax.swing.JSlider sliderFrame
```
    Slider for frame/slice of image.
  - sliderZ
```
private javax.swing.JSlider sliderZ
```
    3, 1-100%, dictating where the image in the surface should be displayed.
  - t3d_XY_t
```
private javax.media.j3d.Transform3D t3d_XY_t
```
    Actual transform of the image.
  - textZ
```
private javax.swing.JTextField textZ
```
    Text field displaying the percentage of the slider.
  - texUnitStateBXY
```
private javax.media.j3d.TextureUnitState[] texUnitStateBXY
```
    Texture creating appearance for the "back" of the image. Needs to be array even though there will be only 1 item.
  - texUnitStateFXY
```
private javax.media.j3d.TextureUnitState[] texUnitStateFXY
```
    Texture creating appearance for the "front" of the image. Needs to be array even though there will be only 1 item.
  - visibleBox
```
private javax.swing.JCheckBox visibleBox
```
    Check box for whether or not the image should be visible.
  - xRes
```
private float xRes
```
    X and Y resolution.
  - yRes
```
private float yRes
```
    X and Y resolution.
  - zSlice
```
private int zSlice
```
    Z slice, which image of 1-100 are we showing.
- Constructor Detail
  - SurfacePlotter
```
public SurfacePlotter(ModelImage _imageA,
                      ModelLUT _LUTa,
                      int slice,
                      java.awt.GraphicsConfiguration _config)
```
    Makes a frame and puts the image and the plotted quad mesh into it.
    
    Parameters:
    
    _imageA - First image to display
    
    _LUTa - LUT of the imageA (if null grayscale LUT is constructed).
    
    slice - Slice of 3D image that we're going to plot; 0 if 2D.
    
    _config - Graphics configuration.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Calls various methods depending on the action:
    
    Load in menu - calls a file chooser and loads the quad surface
    
    Save in menu - calls a file chooser and saves the quad surface
    
    Exit in menu - exits this frame
    
    View in menu - opens view dialog
    
    Mouse in menu - opens mouse recorder dialog
    
    Line checkbox in menu - toggles polygon mode between fill and line
    
    Visible checkbox on panel - toggles image on and off
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Parameters:
    
    event - Event that triggered function.
  - autoCapture
```
public void autoCapture()
```
    Override the parent autoCapture method to capture MIP image volume.
    
    Overrides:
    
    autoCapture in class RenderViewBase
  - disableCamera
```
public void disableCamera()
```
    Set the captureFrame to null.
    
    Overrides:
    
    disableCamera in class RenderViewBase
  - dispatchSavedEvent
```
public void dispatchSavedEvent(java.util.EventObject event)
```
    Dispatches event to appropriate object.
    
    Parameters:
    
    event - Event to dispatch.
  - disposeLocal
```
public void disposeLocal()
```
    Dispose memory.
    
    Overrides:
    
    disposeLocal in class RenderViewBase
  - finalize
```
public void finalize()
              throws java.lang.Throwable
```
    Finalize to free memory.
    
    Overrides:
    
    finalize in class java.lang.Object
    
    Throws:
    
    java.lang.Throwable - DOCUMENT ME!
  - getCameraPanel
```
public JPanelCamera getCameraPanel()
```
    Get the camera control panel.
    
    Returns:
    
    JPanelCamera camera control panel
  - getControlPanel
```
public javax.swing.JPanel getControlPanel()
```
    Get the main control panel.
    
    Returns:
    
    JPanel the main control panel
  - getImageA
```
public ModelImage getImageA()
```
    Accessor that returns the reference to imageA.
    
    Overrides:
    
    getImageA in class RenderViewBase
    
    Returns:
    
    image
  - getImageB
```
public ModelImage getImageB()
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Overrides:
    
    getImageB in class RenderViewBase
    
    Returns:
    
    null
  - getMouseControl
```
public JPanelMousePlotter getMouseControl()
```
    Return mouseDialog from parent frame.
    
    Returns:
    
    mouseDialog Mouse Dialog box.
  - getMouseMode
```
public int getMouseMode()
```
    Gets the mouse pointer mode - standard or fly - from the view dialog.
    
    Returns:
    
    The mouse pointer mode.
  - getMousePanel
```
public JPanelMousePlotter getMousePanel()
```
    Get the mouse recorder control panel.
    
    Returns:
    
    JPanelMousePlotter mouse control panel
  - getSampleSize
```
public int getSampleSize()
```
    Get the sample factor.
    
    Returns:
    
    int return the sample factor
  - getSceneState
```
public java.lang.Object getSceneState()
```
    Gets the current scene state, in terms of what number the slice is on and if it is visible.
    
    Specified by:
    
    getSceneState in class RenderViewBase
    
    Returns:
    
    A SceneState object with the variables set appropriately.
  - getSurfaceBoxPanel
```
public JPanelSurfaceBox getSurfaceBoxPanel()
```
    Get the surface box control ???
    
    Returns:
    
    JPanelSurfaceBox
  - getViewPanel
```
public JPanelView getViewPanel()
```
    Get the view control panel.
    
    Returns:
    
    JPanelView the view control
  - hideBoxFrame
```
public void hideBoxFrame()
```
    Makes the box frame invisible.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent event)
```
    Unchanged.
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent event)
```
    Used in MouseRecorder to stop one series of slide moves.
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Parameters:
    
    event - Original mouse event.
  - resample
```
public void resample(java.lang.String selectedValue)
```
    Call by the plotter render frame to resample.
    
    Parameters:
    
    selectedValue - resample factor
  - resetMouseDialog
```
public void resetMouseDialog()
```
    Reset mouseDialog box.
  - rotateImage
```
public void rotateImage()
```
    Override the parent rotateImage method to rotate the MIP image volume. This method manully rotate the image volume during the camera snapshooting.
    
    Overrides:
    
    rotateImage in class RenderViewBase
  - setAlphaBlend
```
public void setAlphaBlend(int value)
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Specified by:
    
    setAlphaBlend in class RenderViewBase
    
    Parameters:
    
    value - DOCUMENT ME!
  - setEnabled
```
public void setEnabled(boolean flag)
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Overrides:
    
    setEnabled in class java.awt.Component
    
    Parameters:
    
    flag - DOCUMENT ME!
  - setGUI
```
public void setGUI(java.lang.Object scene)
```
    Sets the GUI components to their proper state before the action is dispatched from the player.
    
    Specified by:
    
    setGUI in class RenderViewBase
    
    Parameters:
    
    scene - The state of the scene.
  - setLUTa
```
public void setLUTa(ModelLUT LUT)
```
    Accessor that sets the LUT.
    
    Parameters:
    
    LUT - the LUT
  - setMouseMode
```
public void setMouseMode(int mode)
```
    Sets the mouse pointer mode - standard or fly - in the view dialog.
    
    Parameters:
    
    mode - Mode to set to.
  - setPolygonMode
```
public void setPolygonMode(boolean flag)
```
    Set the polygonal render mode.
    
    Parameters:
    
    flag - mode is on or not
  - setRenderPerspective
```
public void setRenderPerspective(boolean bEnable)
```
    Enable perspective projection rendering; otherwise use orthographic projection.
    
    Parameters:
    
    bEnable - true to enable perspective projection
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Specified by:
    
    setRGBTA in class RenderViewBase
    
    Parameters:
    
    RGBT - DOCUMENT ME!
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Specified by:
    
    setRGBTB in class RenderViewBase
    
    Parameters:
    
    RGBT - DOCUMENT ME!
  - setRotationAngle
```
public void setRotationAngle(int value)
```
    Set the rotation angel for the camera control.
    
    Overrides:
    
    setRotationAngle in class RenderViewBase
    
    Parameters:
    
    value - int
  - setRotationAxis
```
public void setRotationAxis(int axis)
```
    Set the rotation axis for the camera control.
    
    Overrides:
    
    setRotationAxis in class RenderViewBase
    
    Parameters:
    
    axis - rotation axis x, y, z
  - setSceneState
```
public void setSceneState(java.lang.Object scene)
```
    Sets the scene state appropriately.
    
    Parameters:
    
    scene - The state of the scene.
  - setSlice
```
public void setSlice(int slice)
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Specified by:
    
    setSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - DOCUMENT ME!
  - setTimeSlice
```
public void setTimeSlice(int slice)
```
    Does nothing but must instantiate for this to be a subclass of RenderViewBase.
    
    Specified by:
    
    setTimeSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - DOCUMENT ME!
  - showBoxFrame
```
public void showBoxFrame()
```
    Makes the box frame visible.
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent e)
```
    Sets where image is in scene based on knob along slider.
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Parameters:
    
    e - Event that triggered this function
  - transformChanged
```
public void transformChanged(int type,
                             javax.media.j3d.Transform3D transform)
```
    Does nothing but must instantiate for this to be a subclass of ViewJFrameSurface.
    
    Specified by:
    
    transformChanged in interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback
    
    Parameters:
    
    type - DOCUMENT ME!
    
    transform - DOCUMENT ME!
  - updateImageExtents
```
public boolean updateImageExtents()
```
    This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.
    
    Specified by:
    
    updateImageExtents in interface ViewImageUpdateInterface
    
    Returns:
    
    DOCUMENT ME!
  - updateImages
```
public final boolean updateImages()
```
    This methods calls the componentImage's update method to redraw the screen - fastest of the three update methods.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public final boolean updateImages(boolean forceShow)
```
    This methods calls the componentImage's update method to redraw the screen. Without LUT changes.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    forceShow - forces show to re import image and calc. java image
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public final boolean updateImages(ModelLUT LUTa,
                                  ModelLUT LUTb,
                                  boolean forceShow,
                                  int interpMode)
```
    This methods calls the componentImage's update method to redraw the screen.
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    LUTa - LUT used to update imageA
    
    LUTb - LUT used to update imageB (not used in the plotter)
    
    forceShow - forces show to re import image and calc. java image
    
    interpMode - image interpolation method (Nearest or Smooth)
    
    Returns:
    
    boolean confirming successful update
  - buildControlPanel
```
private javax.swing.JPanel buildControlPanel()
```
    Panel that has a slider for the image.
    
    Returns:
    
    DOCUMENT ME!
  - buildMenu
```
private void buildMenu()
```
    Builds menus for the frame.
  - buildToolBar
```
private void buildToolBar()
```
    Builds the toolbar for the volume render frame.
  - configureFrame
```
private void configureFrame()
```
    Constructs main frame structures for the surface.
  - createImageSceneGraph
```
private void createImageSceneGraph()
```
    Creates the scene graph.
  - load
```
private void load()
```
    Calls a file chooser then loads the quad mesh from that file. Removes the image and disables the visible check box, so the user may not see the image associated with the original quad mesh once a new one has been loaded.
  - makeSeparator
```
private javax.swing.JButton makeSeparator()
```
    Makes a separator for the use in the toolbars.
    
    Returns:
    
    Separator for the toolbar.
  - save
```
private void save()
```
    Calls a file chooser then writes the quad mesh to that file.
  - setSliderEnabled
```
private void setSliderEnabled(boolean flag)
```
    Sets the slider, the label "Z (1-100)" and the labels underneath the slider to enabled or disabled, depending on flag.
    
    Parameters:
    
    flag - true means enable, false means disable.
  - setupEye
```
private void setupEye()
```
    Set up the center point of the red line boxframe.
  - translateImage
```
private void translateImage()
```
    DOCUMENT ME!
  - updateViewScreenScale
```
private void updateViewScreenScale(javax.media.j3d.Transform3D kTransform)
```
    This function calculates the scale factor for zooming in parallel projection. The scenario is to calculate the distance between the origin boxframe center and tranformed boxframe center. This distance is used to compute the screen scale factor.
    
    Parameters:
    
    kTransform - The tranformation matrix from tranformChanged().

Class SurfacePlotter

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Nested classes/interfaces inherited from class java.awt.Canvas

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Fields inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Fields inherited from class javax.media.j3d.Canvas3D

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface com.sun.j3d.utils.behaviors.mouse.MouseBehaviorCallback

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.J3D.RenderViewBase

Methods inherited from class gov.nih.mipav.view.renderer.J3D.VolumeCanvas3D

Methods inherited from class javax.media.j3d.Canvas3D

Methods inherited from class java.awt.Canvas

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

boxDialog

componentImageXY

controlPanel

current

extents

imageBranch

isVisible

itemLine

label1

label100

label50

labelZ

LUTa

mainPanel

mouseDialog

mouseRotateBehavior

mouseTranslateBehavior

mouseZoomBehavior

myEyePoint

objTransXY

openingMenuBar

panelToolbar

parallelScaleT3D

setSliderFlag

slice

sliderEvents

sliderFrame

sliderZ

t3d_XY_t

textZ

texUnitStateBXY

texUnitStateFXY

visibleBox

xRes

yRes

zSlice

Constructor Detail

SurfacePlotter

Method Detail

actionPerformed

autoCapture

disableCamera

dispatchSavedEvent

disposeLocal

finalize

getCameraPanel

getControlPanel

getImageA

getImageB

getMouseControl

getMouseMode

getMousePanel

getSampleSize

getSceneState

getSurfaceBoxPanel

getViewPanel

hideBoxFrame

mouseClicked