Package gov.nih.mipav.model.algorithms

Class AlgorithmASM.FileMATLAB

java.lang.Object
gov.nih.mipav.model.file.FileBase
gov.nih.mipav.model.algorithms.AlgorithmASM.FileMATLAB
Enclosing class:
AlgorithmASM
public class AlgorithmASM.FileMATLAB extends FileBase

  • Field Details

  • Constructor Details

    • FileMATLAB

      public FileMATLAB(String fileName, String fileDir) throws IOException
      LIFF reader/writer constructor.
      Parameters:
      fileName - file name
      fileDir - file directory
      Throws:
      IOException - if there is an error making the file

  • Method Details

    • finalize

      public void finalize()
      Prepares this class for cleanup. Calls the finalize method for existing elements, closes any open files and sets other elements to null.
      Overrides:
      finalize in class FileBase

    • getFileInfo

      public FileInfoBase getFileInfo()
      Accessor that returns the file info.
      Returns:
      FileInfoBase containing the file info

    • getImageBuffer

      public float[] getImageBuffer()
      Accessor that returns the image buffer.
      Returns:
      buffer of image.

    • getModelLUT

      public ModelLUT getModelLUT()
      Rreturns LUT if defined.
      Returns:
      the LUT if defined else it is null

    • readImage

      public ModelImage readImage(boolean multiFile, boolean one) throws IOException
      Reads the MATLAB header.
      Parameters:
      multiFile - true if a set of files each containing a separate 2D image is present false if one file with either a 2D image or a stack of 2D images
      one - true if only want to read in one image of the 3D set
      Returns:
      returns the image
      Throws:
      IOException - if there is an error reading the file

    • readCString

      private String readCString() throws IOException
      Throws:
      IOException

    • setFileName

      public void setFileName(String fName)
      Accessor to set the file name (used for reading COR multiFile).
      Parameters:
      fName - file name of image to read.