Package gov.nih.mipav.view.dialogs

Class JDialogDTICreateListFile

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogDTICreateListFile

All Implemented Interfaces:

AlgorithmInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class JDialogDTICreateListFile
extends JDialogBase
implements AlgorithmInterface

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private AlgorithmDTICreateListFile	alg	handle to the algorithm
private String	bmatrixPath	bmatrix path
private JButton	bmtxtFileBrowseButton	browse button
private JTextField	bmtxtFilePathTextField	path to bmatrix file
private JRadioButton	bmtxtFileRadio	b-matrix file option
private String	currDir	current directory
private JButton	dicomB0VolumeBrowseButton	browse button to locate the dicom b0 volume if doing registration
private JLabel	dicomB0VolumeLabel	label for dicom b0 volume if doing registration
private String	dicomB0VolumePath
private JTextField	dicomB0VolumeTextField	path to dicom b0 volume if doing registration
private JLabel	dwiLabel	dwi data label
private JButton	dwiPathBrowseButton	browse button for dwi file/folder
private JTextField	dwiPathTextField	path to dwi file/dir
private JRadioButton	gradFileRadio	gradient file option
private JButton	gradientFileBrowseButton	browse button
private JTextField	gradientFilePathTextField	path to gradient file
private String	gradientPath	gradient path
private boolean	isDICOM	boolean indicating if we are dealing with dicom or par/rec
private boolean	isInterleaved	boolean if interleaved
private ButtonGroup	optionsGroup	button group for radio buttons
protected JTextArea	outputTextArea	output text area
private JCheckBox	performRegistrationCheckbox	checkbox for performing registration
private String	prFileDir	par/rec file directory
private String	prFileName	par/rec file name
private JButton	registrationSettingsButton	button to launch the registration settings
private JDialogDTICreateListFileRegOAR35DOptions	regOptions	handle to JDialogDTICreateListFileRegOAR35DOptions
private JScrollPane	scrollPane	Scroll Pane for the Text Area
private String	studyName	study name string
private String	studyPath	study path

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogDTICreateListFile()

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent e)
void	algorithmPerformed(AlgorithmBase algorithm)	algorithm performed
protected void	callAlgorithm()	call algorithm
void	init()
void	setBmtxtPath(String bmatrixPath)
void	setGradientPath(String gradientPath)
void	setInterleaved(boolean isInterleaved)
void	setStudyPath(String studyPath)
boolean	validateFilePaths()	valdiates the file paths for the study path and gradient file path
void	windowClosing(WindowEvent event)	Disposes of error dialog, then frame.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

dwiPathTextField

private JTextField dwiPathTextField

path to dwi file/dir

dwiPathBrowseButton

private JButton dwiPathBrowseButton

browse button for dwi file/folder

optionsGroup

private ButtonGroup optionsGroup

button group for radio buttons

gradFileRadio

private JRadioButton gradFileRadio

gradient file option

bmtxtFileRadio

private JRadioButton bmtxtFileRadio

b-matrix file option

gradientFilePathTextField

private JTextField gradientFilePathTextField

path to gradient file

dwiLabel

private JLabel dwiLabel

dwi data label

gradientFileBrowseButton

private JButton gradientFileBrowseButton

browse button

bmtxtFilePathTextField

private JTextField bmtxtFilePathTextField

path to bmatrix file

bmtxtFileBrowseButton

private JButton bmtxtFileBrowseButton

browse button

outputTextArea

protected JTextArea outputTextArea

output text area

scrollPane

private JScrollPane scrollPane

Scroll Pane for the Text Area

currDir

private String currDir

current directory

studyName

private String studyName

study name string

prFileDir

private String prFileDir

par/rec file directory

prFileName

private String prFileName

par/rec file name

alg

private AlgorithmDTICreateListFile alg

handle to the algorithm

gradientPath

private String gradientPath

gradient path

bmatrixPath

private String bmatrixPath

bmatrix path

studyPath

private String studyPath

study path

isInterleaved

private boolean isInterleaved

boolean if interleaved

isDICOM

private boolean isDICOM

boolean indicating if we are dealing with dicom or par/rec

performRegistrationCheckbox

private JCheckBox performRegistrationCheckbox

checkbox for performing registration

registrationSettingsButton

private JButton registrationSettingsButton

button to launch the registration settings

regOptions

private JDialogDTICreateListFileRegOAR35DOptions regOptions

handle to JDialogDTICreateListFileRegOAR35DOptions

dicomB0VolumeLabel

private JLabel dicomB0VolumeLabel

label for dicom b0 volume if doing registration

dicomB0VolumeTextField

private JTextField dicomB0VolumeTextField

path to dicom b0 volume if doing registration

dicomB0VolumePath

private String dicomB0VolumePath

dicomB0VolumeBrowseButton

private JButton dicomB0VolumeBrowseButton

browse button to locate the dicom b0 volume if doing registration

Constructor Details

JDialogDTICreateListFile

public JDialogDTICreateListFile()

Method Details

init

public void init()

actionPerformed

public void actionPerformed(ActionEvent e)

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class JDialogBase

callAlgorithm

protected void callAlgorithm()

call algorithm

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

algorithm performed

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - the algorithm which has just completed

validateFilePaths

public boolean validateFilePaths()

valdiates the file paths for the study path and gradient file path

Returns:

boolean success

setBmtxtPath

public void setBmtxtPath(String bmatrixPath)

Parameters:

bmtxtPath -

setGradientPath

public void setGradientPath(String gradientPath)

Parameters:

gradientPath -

setStudyPath

public void setStudyPath(String studyPath)

Parameters:

studyPath -

setInterleaved

public void setInterleaved(boolean isInterleaved)

Parameters:

isInterleaved -

windowClosing

public void windowClosing(WindowEvent event)

Description copied from class: JDialogBase

Disposes of error dialog, then frame. Sets cancelled to true.

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class JDialogBase

Parameters:

event - WindowEvent