Class JDialogCreateHEDpngFiles

  • All Implemented Interfaces:
    AlgorithmInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

    public class JDialogCreateHEDpngFiles
    extends JDialogBase
    implements AlgorithmInterface
    See Also:
    Serialized Form
    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog
      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer
      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy
    • Constructor Summary

      Constructors 
      Constructor Description
      JDialogCreateHEDpngFiles​(java.awt.Frame theParentFrame)
      Constructor.
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Dialog local actionPerformed handler.
      void algorithmPerformed​(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented.
      void buildKeyImagePanel()
      Panel contains both the 3D image dir and saved 2D slices atlas dir.
      void callAlgorithm()
      Driver function to read image and VOIs, and convert each 3D image to 2D slices.
      void disposeLocal()
      dispose memory
      void init()
      Initial panel
      void loadFiles()
      load image files and voi files
      private void read_image_name​(java.io.File dir)  
      void readFile()  
      private void readKeyImageDir()
      Read 3D images directory.
      private void recordSaveImageDir()
      Let user specify the saved 2D slices, record the save directory.
      void saveHED2DsliceCED()  
      void saveImage​(ModelImage image, ModelImage imageMask, java.lang.String orientation)  
      private void savePNGfile​(java.lang.String dirName, java.lang.String fileName, ModelImage srcImage, float minIntensity, float maxIntensity, int xDim, int yDim, boolean isMask)  
      ModelImage scaleIntensity​(ModelImage image)
      Scale the image intensity between 0 and 1000
      private void traverse_folder​(java.io.File dir, java.lang.String hashID)  
      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    • Field Detail

      • labelKeyImage

        private javax.swing.JLabel labelKeyImage
        key image directory.
      • textFieldKeyImage

        private javax.swing.JTextField textFieldKeyImage
      • buttonKeyImage

        private javax.swing.JButton buttonKeyImage
      • imageSelectionPanel

        private javax.swing.JPanel imageSelectionPanel
      • labelSaveImage

        private javax.swing.JLabel labelSaveImage
        saved 2D slices atlas dir.
      • textFieldSaveImage

        private javax.swing.JTextField textFieldSaveImage
      • buttonSaveImage

        private javax.swing.JButton buttonSaveImage
      • saveImageChooser

        private javax.swing.JFileChooser saveImageChooser
      • saveImageDirectory

        private java.lang.String saveImageDirectory
      • nameTableImages

        java.util.Hashtable<java.lang.String,​java.lang.String> nameTableImages
      • nameTableImagesCED

        java.util.Hashtable<java.lang.String,​java.lang.String> nameTableImagesCED
      • nameTableImagesMask

        java.util.Hashtable<java.lang.String,​java.lang.String> nameTableImagesMask
      • keyImagesOrientation

        private java.util.Hashtable<java.lang.String,​ModelImage> keyImagesOrientation
      • keyImagesOrientationCED

        private java.util.Hashtable<java.lang.String,​ModelImage> keyImagesOrientationCED
      • keyImagesOrientationMask

        private java.util.Hashtable<java.lang.String,​ModelImage> keyImagesOrientationMask
      • axial_index

        private int axial_index
      • sagittal_index

        private int sagittal_index
      • coronal_index

        private int coronal_index
      • startIndex

        int startIndex
      • endIndex

        int endIndex
    • Constructor Detail

      • JDialogCreateHEDpngFiles

        public JDialogCreateHEDpngFiles​(java.awt.Frame theParentFrame)
        Constructor.
        Parameters:
        theParentFrame -
    • Method Detail

      • disposeLocal

        public void disposeLocal()
        dispose memory
      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Dialog local actionPerformed handler.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
      • recordSaveImageDir

        private void recordSaveImageDir()
        Let user specify the saved 2D slices, record the save directory.
      • readKeyImageDir

        private void readKeyImageDir()
        Read 3D images directory.
      • traverse_folder

        private void traverse_folder​(java.io.File dir,
                                     java.lang.String hashID)
      • read_image_name

        private void read_image_name​(java.io.File dir)
      • algorithmPerformed

        public void algorithmPerformed​(AlgorithmBase algorithm)
        This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
        Specified by:
        algorithmPerformed in interface AlgorithmInterface
        Parameters:
        algorithm - Algorithm that caused the event.
      • callAlgorithm

        public void callAlgorithm()
        Driver function to read image and VOIs, and convert each 3D image to 2D slices.
      • saveHED2DsliceCED

        public void saveHED2DsliceCED()
      • saveImage

        public void saveImage​(ModelImage image,
                              ModelImage imageMask,
                              java.lang.String orientation)
      • scaleIntensity

        public ModelImage scaleIntensity​(ModelImage image)
        Scale the image intensity between 0 and 1000
        Parameters:
        image -
        Returns:
      • savePNGfile

        private void savePNGfile​(java.lang.String dirName,
                                 java.lang.String fileName,
                                 ModelImage srcImage,
                                 float minIntensity,
                                 float maxIntensity,
                                 int xDim,
                                 int yDim,
                                 boolean isMask)
      • loadFiles

        public void loadFiles()
        load image files and voi files
      • readFile

        public void readFile()
      • init

        public void init()
        Initial panel
      • buildKeyImagePanel

        public void buildKeyImagePanel()
        Panel contains both the 3D image dir and saved 2D slices atlas dir.