Package gov.nih.mipav.view.renderer.WildMagic.ProstateFramework

Class svm_train

java.lang.Object

gov.nih.mipav.view.renderer.WildMagic.ProstateFramework.svm_train

class svm_train
extends java.lang.Object

Copyright (c) 2000-2014 Chih-Chung Chang and Chih-Jen Lin All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither name of copyright holders nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Field Summary

Fields

Modifier and Type	Field	Description
private int	cross_validation
private java.lang.String	error_msg
private java.lang.String	input_file_name
private svm_model	model
private java.lang.String	model_file_name
private int	nr_fold
private svm_parameter	param
private svm_problem	prob
private static svm_print_interface	svm_print_null

Constructor Summary

Constructors

Constructor	Description
svm_train()

Method Summary

Modifier and Type	Method	Description
private static double	atof(java.lang.String s)
private static int	atoi(java.lang.String s)
private static svm_problem	constructProblem(java.util.List<java.lang.Double> vy, java.util.List<svm_node[]> vx, int _max_index)
private void	do_cross_validation()
private static void	exit_with_help()
svm_model	getModel()
static void	main(java.lang.String[] argv)
private void	parse_command_line(java.lang.String[] argv)
private void	read_problem()
private void	run(java.lang.String[] argv)
void	run(java.lang.String trainFileName, java.lang.String modelFileName)
void	run(java.util.List<java.lang.Double> classes, java.util.List<svm_node[]> feature, int numberFeatures)
private void	set_file_name(java.lang.String inputFileName, java.lang.String modelFileName)
private void	setParameters()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

param

private svm_parameter param

prob

private svm_problem prob

model

private svm_model model

input_file_name

private java.lang.String input_file_name

model_file_name

private java.lang.String model_file_name

error_msg

private java.lang.String error_msg

cross_validation

private int cross_validation

nr_fold

private int nr_fold

svm_print_null

private static svm_print_interface svm_print_null

Constructor Detail

svm_train

svm_train()

Method Detail

exit_with_help

private static void exit_with_help()

setParameters

private void setParameters()

constructProblem

private static svm_problem constructProblem(java.util.List<java.lang.Double> vy,
                                            java.util.List<svm_node[]> vx,
                                            int _max_index)

run

public void run(java.util.List<java.lang.Double> classes,
                java.util.List<svm_node[]> feature,
                int numberFeatures)

set_file_name

private void set_file_name(java.lang.String inputFileName,
                           java.lang.String modelFileName)

run

public void run(java.lang.String trainFileName,
                java.lang.String modelFileName)
         throws java.io.IOException

Throws:

java.io.IOException

getModel

public svm_model getModel()

do_cross_validation

private void do_cross_validation()

run

private void run(java.lang.String[] argv)
          throws java.io.IOException

Throws:

java.io.IOException

main

public static void main(java.lang.String[] argv)
                 throws java.io.IOException

Throws:

java.io.IOException

atof

private static double atof(java.lang.String s)

atoi

private static int atoi(java.lang.String s)

parse_command_line

private void parse_command_line(java.lang.String[] argv)

read_problem

private void read_problem()
                   throws java.io.IOException

Throws:

java.io.IOException