Package gov.nih.mipav.view.dialogs
Class JDialogGaussianBlur
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- java.awt.Window
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- java.awt.Dialog
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- javax.swing.JDialog
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- gov.nih.mipav.view.dialogs.JDialogBase
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- gov.nih.mipav.view.dialogs.JDialogScriptableBase
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- gov.nih.mipav.view.dialogs.JDialogGaussianBlur
 
 
 
 
 
 
 
 
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- All Implemented Interfaces:
- AlgorithmInterface,- ScriptableActionInterface,- DialogDefaultsInterface,- ActionDiscovery,- java.awt.event.ActionListener,- java.awt.event.FocusListener,- java.awt.event.ItemListener,- java.awt.event.WindowListener,- java.awt.image.ImageObserver,- java.awt.MenuContainer,- java.io.Serializable,- java.util.EventListener,- javax.accessibility.Accessible,- javax.swing.RootPaneContainer,- javax.swing.WindowConstants
 
 public class JDialogGaussianBlur extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery Dialog to get user input, then call the algorithm. The user is able to control the degree of blurring in all dimensions and indicate if a correction factor be applied to the z-dimension to account for differing resolutions between the xy resolutions (intra-plane) and the z resolution (inter-plane). The user has the option to generate a new image or replace the source image. In addition the user can indicate if he/she wishes to have the algorithm applied to whole image or to the VOI regions. It should be noted that the algorithms are executed in their own thread.- Version:
- 0.1 Nov 17, 1998
- Author:
- Matthew J. McAuliffe, Ph.D.
- See Also:
- AlgorithmGaussianBlur, Serialized Form
 
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Nested Class Summary- 
Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBaseJDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
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Nested classes/interfaces inherited from class javax.swing.JDialogjavax.swing.JDialog.AccessibleJDialog
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Nested classes/interfaces inherited from class java.awt.Dialogjava.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
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Nested classes/interfaces inherited from class java.awt.Windowjava.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
 
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Field SummaryFields Modifier and Type Field Description private JPanelColorChannelscolorChannelPanelDOCUMENT ME!private AlgorithmGaussianBlurgaussianBlurAlgoDOCUMENT ME!private AlgorithmGaussianBlurSepgaussianBlurSepAlgoDOCUMENT ME!private ModelImageimageSource image.private booleanimage25DFlag indicating if slices should be blurred independently.private javax.swing.JCheckBoximage25DCheckboxDOCUMENT ME!private JPanelAlgorithmOutputOptionsoutputOptionsPanelDOCUMENT ME!private ModelImageresultImageResult image.private booleanseparableDOCUMENT ME!private javax.swing.JCheckBoxsepCheckboxDOCUMENT ME!private static longserialVersionUIDUse serialVersionUID for interoperability.private JPanelSigmassigmaPanelDOCUMENT ME!private java.lang.String[]titlesDOCUMENT ME!private booleanuseOCLFlag indicating whether to use OpenCL processing.private javax.swing.JCheckBoxuseOCLCheckboxIndicates whether user wants openCL for processing.private ViewUserInterfaceuserInterfaceDOCUMENT ME!- 
Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBasedisplayInNewFrame, isComplete, scriptParameters
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBaseapplyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager
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Fields inherited from class javax.swing.JDialogaccessibleContext, rootPane, rootPaneCheckingEnabled
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Fields inherited from class java.awt.ComponentBOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
 
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Constructor SummaryConstructors Constructor Description JDialogGaussianBlur()Empty constructor needed for dynamic instantiation.JDialogGaussianBlur(java.awt.Frame theParentFrame, ModelImage im)Construct the gaussian blur dialog.
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Method SummaryAll Methods Instance Methods Concrete Methods Modifier and Type Method Description voidactionPerformed(java.awt.event.ActionEvent event)Closes dialog box when the OK button is pressed and calls the algorithm.voidalgorithmPerformed(AlgorithmBase algorithm)This method is required if the AlgorithmPerformed interface is implemented.protected voidcallAlgorithm()Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.ParameterTablecreateInputParameters()Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()).ParameterTablecreateOutputParameters()Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).protected voiddoPostAlgorithmActions()Perform any actions required after the running of the algorithm is complete.ActionMetadatagetActionMetadata()Return meta-information about this discoverable action for categorization and labeling purposes.java.lang.StringgetOutputImageName(java.lang.String imageParamName)Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).ModelImagegetResultImage()Accessor that returns the image.private voidinit()Sets up the GUI (panels, buttons, etc) and displays it on the screen.booleanisActionComplete()Returns whether the action has successfully completed its execution.voiditemStateChanged(java.awt.event.ItemEvent event)Changes labels based on whether or not check box is checked.protected voidsetGUIFromParams()Set up the dialog GUI based on the parameters before running the algorithm as part of a script.voidsetImage25D(boolean flag)Accessor that sets the slicing flag.voidsetSeparable(boolean separable)Accessor that sets whether or not the separable convolution kernel is used.voidsetUseOCL(boolean useOCL)Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).private booleansetVariables()Use the GUI results to set up the variables needed to run the algorithm.protected voidstoreParamsFromGUI()Store the parameters from the dialog to record the execution of this algorithm.- 
Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBasegetDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete
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Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBasebuildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
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Methods inherited from class javax.swing.JDialogaddImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
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Methods inherited from class java.awt.DialogaddNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
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Methods inherited from class java.awt.WindowaddPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
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Methods inherited from class java.awt.Containeradd, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Componentaction, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Methods inherited from class java.lang.Objectclone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscoveryscriptRun
 
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Field Detail- 
serialVersionUIDprivate static final long serialVersionUID Use serialVersionUID for interoperability.- See Also:
- Constant Field Values
 
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colorChannelPanelprivate JPanelColorChannels colorChannelPanel DOCUMENT ME!
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gaussianBlurAlgoprivate AlgorithmGaussianBlur gaussianBlurAlgo DOCUMENT ME!
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gaussianBlurSepAlgoprivate AlgorithmGaussianBlurSep gaussianBlurSepAlgo DOCUMENT ME!
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imageprivate ModelImage image Source image.
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image25Dprivate boolean image25D Flag indicating if slices should be blurred independently.
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image25DCheckboxprivate javax.swing.JCheckBox image25DCheckbox DOCUMENT ME!
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useOCLprivate boolean useOCL Flag indicating whether to use OpenCL processing.
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useOCLCheckboxprivate javax.swing.JCheckBox useOCLCheckbox Indicates whether user wants openCL for processing.
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outputOptionsPanelprivate JPanelAlgorithmOutputOptions outputOptionsPanel DOCUMENT ME!
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resultImageprivate ModelImage resultImage Result image.
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separableprivate boolean separable DOCUMENT ME!
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sepCheckboxprivate javax.swing.JCheckBox sepCheckbox DOCUMENT ME!
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sigmaPanelprivate JPanelSigmas sigmaPanel DOCUMENT ME!
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titlesprivate java.lang.String[] titles DOCUMENT ME!
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userInterfaceprivate ViewUserInterface userInterface DOCUMENT ME!
 
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Constructor Detail- 
JDialogGaussianBlurpublic JDialogGaussianBlur() Empty constructor needed for dynamic instantiation.
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JDialogGaussianBlurpublic JDialogGaussianBlur(java.awt.Frame theParentFrame, ModelImage im)Construct the gaussian blur dialog.- Parameters:
- theParentFrame- Parent frame.
- im- Source image.
 
 
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Method Detail- 
actionPerformedpublic void actionPerformed(java.awt.event.ActionEvent event) Closes dialog box when the OK button is pressed and calls the algorithm.- Specified by:
- actionPerformedin interface- java.awt.event.ActionListener
- Overrides:
- actionPerformedin class- JDialogBase
- Parameters:
- event- Event that triggers function.
 
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algorithmPerformedpublic void algorithmPerformed(AlgorithmBase algorithm) This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.- Specified by:
- algorithmPerformedin interface- AlgorithmInterface
- Parameters:
- algorithm- Algorithm that caused the event.
 
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getResultImagepublic ModelImage getResultImage() Accessor that returns the image.- Returns:
- The result image.
 
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itemStateChangedpublic void itemStateChanged(java.awt.event.ItemEvent event) Changes labels based on whether or not check box is checked.- Specified by:
- itemStateChangedin interface- java.awt.event.ItemListener
- Overrides:
- itemStateChangedin class- JDialogBase
- Parameters:
- event- event that cause the method to fire
 
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setImage25Dpublic void setImage25D(boolean flag) Accessor that sets the slicing flag.- Parameters:
- flag-- trueindicates slices should be blurred independently.
 
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setUseOCLpublic void setUseOCL(boolean useOCL) Accessor that sets whether to use OpenCL processing (may still not be set if it is not supported on the system).- Parameters:
- useOCL- Whether to try to use OpenCL processing.
 
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setSeparablepublic void setSeparable(boolean separable) Accessor that sets whether or not the separable convolution kernel is used.- Parameters:
- separable- Whether or not the separable convolution kernel is used.
 
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callAlgorithmprotected void callAlgorithm() Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.- Specified by:
- callAlgorithmin class- JDialogScriptableBase
 
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doPostAlgorithmActionsprotected void doPostAlgorithmActions() Perform any actions required after the running of the algorithm is complete.- Overrides:
- doPostAlgorithmActionsin class- JDialogScriptableBase
 
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setGUIFromParamsprotected void setGUIFromParams() Set up the dialog GUI based on the parameters before running the algorithm as part of a script.- Specified by:
- setGUIFromParamsin class- JDialogScriptableBase
 
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storeParamsFromGUIprotected void storeParamsFromGUI() throws ParserExceptionStore the parameters from the dialog to record the execution of this algorithm.- Specified by:
- storeParamsFromGUIin class- JDialogScriptableBase
- Throws:
- ParserException- If there is a problem creating one of the new parameters.
 
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initprivate void init() Sets up the GUI (panels, buttons, etc) and displays it on the screen.
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setVariablesprivate boolean setVariables() Use the GUI results to set up the variables needed to run the algorithm.- Returns:
- trueif parameters set successfully,- falseotherwise.
 
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getActionMetadatapublic ActionMetadata getActionMetadata() Return meta-information about this discoverable action for categorization and labeling purposes.- Specified by:
- getActionMetadatain interface- ActionDiscovery
- Returns:
- Metadata for this action.
 
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createInputParameterspublic ParameterTable createInputParameters() Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()).- Specified by:
- createInputParametersin interface- ActionDiscovery
- Returns:
- A parameter table listing the inputs of this algorithm.
 
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createOutputParameterspublic ParameterTable createOutputParameters() Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).- Specified by:
- createOutputParametersin interface- ActionDiscovery
- Returns:
- A parameter table listing the outputs of this algorithm.
 
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getOutputImageNamepublic java.lang.String getOutputImageName(java.lang.String imageParamName) Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).- Specified by:
- getOutputImageNamein interface- ActionDiscovery
- Parameters:
- imageParamName- The output image parameter label for which to get the image name.
- Returns:
- The image name of the requested output image parameter label.
 
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isActionCompletepublic boolean isActionComplete() Returns whether the action has successfully completed its execution.- Specified by:
- isActionCompletein interface- ActionDiscovery
- Returns:
- True, if the action is complete. False, if the action failed or is still running.
 
 
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