Package gov.nih.mipav.model.file

Class FileAvi

java.lang.Object

gov.nih.mipav.model.file.FileBase

gov.nih.mipav.model.file.FileAvi

public class FileAvi
extends FileBase

AVI file writer and reader.

Version:

1.1 March 5, 2011

Author:

William Gandler, Matthew J. McAuliffe, Ph.D. The Microsoft Video 1 decoding was mostly derived from Mike A good source of sample avi files is http://samples.mplayerhq.hu.

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	AVIF_HASINDEX
private boolean	AVIF_ISINTERLEAVED	DOCUMENT ME!
private boolean	AVIF_MUSTUSEINDEX	globals needed for read - set in readHeader, used in readImage.
private short	bitCount	DOCUMENT ME!
private int	blankFramesSent	DOCUMENT ME!
private byte[]	bufferWrite	DOCUMENT ME!
private float	captureTime
private int	compression	0 for RGB 24 bit per pixel uncompressed 1 for RLE 8 bit per pixel compressed 1296126531 for Microsoft video 1 compression.
private float	compressionQuality	DOCUMENT ME!
private int	dataFramesSent	DOCUMENT ME!
private byte[]	dataSignature	globals needed for write.
private int[]	dcLength	DOCUMENT ME!
private boolean	endianess	true for big-endian and false for little-endian.
private java.io.File	file	DOCUMENT ME!
private java.lang.String	fileDir	DOCUMENT ME!
private FileInfoAvi	fileInfo	DOCUMENT ME!
private java.lang.String	fileName	DOCUMENT ME!
private java.io.File	fileW
private int	framesToCapture
private int	framesToSkip
private int	height	DOCUMENT ME!
private long	idx1Position	DOCUMENT ME!
private ModelImage	imageA	DOCUMENT ME!
private ModelImage	imageB	DOCUMENT ME!
private float[]	imageBufferA	DOCUMENT ME!
private float[]	imageBufferB	DOCUMENT ME!
private float	imageMinA	DOCUMENT ME!
private long	indexPointer	DOCUMENT ME!
private int	indexSize	Size of the index block in bytes.
private boolean	isScript	for saving within scripts.
private int	LIST2Size	DOCUMENT ME!
private int	LIST2subchunkSize	DOCUMENT ME!
private ModelLUT	LUTa	DOCUMENT ME!
private byte[]	lutBuffer	DOCUMENT ME!
private int[]	lutBufferRemapped	DOCUMENT ME!
private int	microSecPerFrame	DOCUMENT ME!
private long	moviPosition	DOCUMENT ME!
private long	moviSubchunkPosition	DOCUMENT ME!
private int	newCompressionType	2 for .mov, 3 for mjpeg, 4 for mp4v2.
private java.lang.String	outputFileName
private ProgressBarInterface	progressBar	DOCUMENT ME!
private java.io.RandomAccessFile	raFileW
private int	rate
private boolean	readQT	DOCUMENT ME!
private float	remapConstA	DOCUMENT ME!
private long[]	savedbLength	DOCUMENT ME!
private long	saveFileSize	DOCUMENT ME!
private long	saveLIST2Size	DOCUMENT ME!
private long	savemovi	DOCUMENT ME!
private int	scale
private float	skipTime
private int	streams	DOCUMENT ME!
private int	tDim	DOCUMENT ME!
private int	totalBlankFrames	DOCUMENT ME!
private int	totalDataFrames	These are used for writing the AVI frame by frame from the surface renderer.
private ViewUserInterface	UI	DOCUMENT ME!
private boolean	useNewCompression	DOCUMENT ME!
private int	width	DOCUMENT ME!
private boolean	writeQT	DOCUMENT ME!
private int	xDim	DOCUMENT ME!
private int	xPad	DOCUMENT ME!
private int	yDim	DOCUMENT ME!
private int	zDim	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.file.FileBase

BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors

Constructor	Description
FileAvi(java.lang.String fileName, java.lang.String fileDir)	Avi reader/writer constructor.

Method Summary

Modifier and Type	Method	Description
void	close()	DOCUMENT ME!
private byte[]	createLUT()	Creates a LUT to write.
void	finalize()	Prepares this class for cleanup.
java.lang.String	getFileDir()	Returns fileDir.
FileInfoAvi	getFileInfo()
java.lang.String	getFileName()	Returns fileName.
boolean	getHasIndex()
int	getMicroSecPerFrame()
ModelLUT	getModelLUT()	Returns LUT if defined.
boolean	getMustUseIndex()
int	getRate()
int	getScale()
int	readHeader()	Reads the image header.
ModelImage	readImage(boolean one)	Reads the AVI file header and data.
boolean	readWriteImage()
void	setAVIWrite(ModelImage _imageA, int microSecPerFrame, int _totalDataFrames, int _totalBlankFrames)	This method sets up for an AVI image write.
void	setCaptureTime(float captureTime)
void	setCompressionQuality(float quality)	DOCUMENT ME!
void	setIsScript(boolean isScript)	DOCUMENT ME!
void	setMicroSecPerFrame(int microSec)	DOCUMENT ME!
void	setOutputFileName(java.lang.String outputFileName)
void	setProgressBar(ProgressBarInterface pBar)	DOCUMENT ME!
void	setReadQT(boolean readQT)	DOCUMENT ME!
void	setSkipTime(float skipTime)
void	setWriteQT(boolean writeQuickTime)	DOCUMENT ME!
private void	writeAVITriplet(int timeSlice, int slice, ModelLUT LUTb, int red, int green, int blue, float opacityPrime, float alphaBlend, java.util.BitSet paintBitmap)	Writes the AVI BGR triplet.
private void	writeAVITripletC(int timeSlice, int slice, ModelRGB RGBTA, ModelRGB RGBTB, int red, int green, int blue, float opacityPrime, float alphaBlend, java.util.BitSet paintBitmap)	Write BGR AVI triplet for color image.
private void	writeAVITripletCFrames()	Write BGR AVI triplet for color image.
void	writeBlankFrame()	DOCUMENT ME!
void	writeDataFrame(ModelImage _imageA)	DOCUMENT ME!
private void	writeidx1CHUNK()	DOCUMENT ME!
boolean	writeImage(ModelImage _imageA, ModelImage _imageB, ModelLUT _LUTa, ModelLUT LUTb, ModelRGB RGBTA, ModelRGB RGBTB, int red, int green, int blue, float OPACITY, float alphaBlend, java.util.BitSet paintBitmap, int compression)	This method writes an AVI image file.
void	writeIntW(int data, boolean bigEndian)	Writes an int as four bytes to a file.
private void	writeRLE8(int timeSlice, int slice, byte[] pixStore, byte[] lastStore, byte[] encodeStore)	Writes the RLE8 encoded LUT index.
void	writeShortW(short data, boolean bigEndian)	Writes a short as two bytes to a file.

Methods inherited from class gov.nih.mipav.model.file.FileBase

addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AVIF_ISINTERLEAVED

private boolean AVIF_ISINTERLEAVED

DOCUMENT ME!

AVIF_MUSTUSEINDEX

private boolean AVIF_MUSTUSEINDEX

globals needed for read - set in readHeader, used in readImage.

AVIF_HASINDEX

private boolean AVIF_HASINDEX

bitCount

private short bitCount

DOCUMENT ME!

blankFramesSent

private int blankFramesSent

DOCUMENT ME!

bufferWrite

private byte[] bufferWrite

DOCUMENT ME!

compression

private int compression

0 for RGB 24 bit per pixel uncompressed 1 for RLE 8 bit per pixel compressed 1296126531 for Microsoft video 1 compression.

compressionQuality

private float compressionQuality

DOCUMENT ME!

dataFramesSent

private int dataFramesSent

DOCUMENT ME!

dataSignature

private byte[] dataSignature

globals needed for write.

dcLength

private int[] dcLength

DOCUMENT ME!

endianess

private boolean endianess

true for big-endian and false for little-endian.

file

private java.io.File file

DOCUMENT ME!

fileDir

private java.lang.String fileDir

DOCUMENT ME!

fileInfo

private FileInfoAvi fileInfo

DOCUMENT ME!

fileName

private java.lang.String fileName

DOCUMENT ME!

height

private int height

DOCUMENT ME!

idx1Position

private long idx1Position

DOCUMENT ME!

imageA

private ModelImage imageA

DOCUMENT ME!

imageB

private ModelImage imageB

DOCUMENT ME!

imageBufferA

private float[] imageBufferA

DOCUMENT ME!

imageBufferB

private float[] imageBufferB

DOCUMENT ME!

imageMinA

private float imageMinA

DOCUMENT ME!

indexPointer

private long indexPointer

DOCUMENT ME!

indexSize

private int indexSize

Size of the index block in bytes.

isScript

private boolean isScript

for saving within scripts.

LIST2Size

private int LIST2Size

DOCUMENT ME!

LIST2subchunkSize

private int LIST2subchunkSize

DOCUMENT ME!

LUTa

private ModelLUT LUTa

DOCUMENT ME!

lutBuffer

private byte[] lutBuffer

DOCUMENT ME!

lutBufferRemapped

private int[] lutBufferRemapped

DOCUMENT ME!

microSecPerFrame

private int microSecPerFrame

DOCUMENT ME!

scale

private int scale

rate

private int rate

moviPosition

private long moviPosition

DOCUMENT ME!

moviSubchunkPosition

private long moviSubchunkPosition

DOCUMENT ME!

newCompressionType

private int newCompressionType

2 for .mov, 3 for mjpeg, 4 for mp4v2.

progressBar

private ProgressBarInterface progressBar

DOCUMENT ME!

readQT

private boolean readQT

DOCUMENT ME!

remapConstA

private float remapConstA

DOCUMENT ME!

savedbLength

private long[] savedbLength

DOCUMENT ME!

saveFileSize

private long saveFileSize

DOCUMENT ME!

saveLIST2Size

private long saveLIST2Size

DOCUMENT ME!

savemovi

private long savemovi

DOCUMENT ME!

streams

private int streams

DOCUMENT ME!

totalBlankFrames

private int totalBlankFrames

DOCUMENT ME!

totalDataFrames

private int totalDataFrames

These are used for writing the AVI frame by frame from the surface renderer.

UI

private ViewUserInterface UI

DOCUMENT ME!

useNewCompression

private boolean useNewCompression

DOCUMENT ME!

width

private int width

DOCUMENT ME!

writeQT

private boolean writeQT

DOCUMENT ME!

xDim

private int xDim

DOCUMENT ME!

yDim

private int yDim

DOCUMENT ME!

zDim

private int zDim

DOCUMENT ME!

tDim

private int tDim

DOCUMENT ME!

xPad

private int xPad

DOCUMENT ME!

outputFileName

private java.lang.String outputFileName

captureTime

private float captureTime

skipTime

private float skipTime

fileW

private java.io.File fileW

raFileW

private java.io.RandomAccessFile raFileW

framesToCapture

private int framesToCapture

framesToSkip

private int framesToSkip

Constructor Detail

FileAvi

public FileAvi(java.lang.String fileName,
               java.lang.String fileDir)
        throws java.io.IOException

Avi reader/writer constructor.

Parameters:

fileName - File name.

fileDir - File directory.

Throws:

java.io.IOException - if there is an error making the file

Method Detail

setCaptureTime

public void setCaptureTime(float captureTime)

setSkipTime

public void setSkipTime(float skipTime)

setOutputFileName

public void setOutputFileName(java.lang.String outputFileName)

getMicroSecPerFrame

public int getMicroSecPerFrame()

getScale

public int getScale()

getRate

public int getRate()

getHasIndex

public boolean getHasIndex()

getMustUseIndex

public boolean getMustUseIndex()

close

public void close()

DOCUMENT ME!

finalize

public void finalize()

Prepares this class for cleanup.

Overrides:

finalize in class FileBase

getFileDir

public java.lang.String getFileDir()

Returns fileDir.

Returns:

fileDir

getFileName

public java.lang.String getFileName()

Returns fileName.

Returns:

filename

getFileInfo

public FileInfoAvi getFileInfo()

getModelLUT

public ModelLUT getModelLUT()

Returns LUT if defined.

Returns:

The LUT if defined, otherwise null.

readImage

public ModelImage readImage(boolean one)
                     throws java.io.IOException

Reads the AVI file header and data.

Parameters:

one - if true only reads one slice per file

Returns:

An ARGB image

Throws:

java.io.IOException - if there is an error reading the file

setAVIWrite

public void setAVIWrite(ModelImage _imageA,
                        int microSecPerFrame,
                        int _totalDataFrames,
                        int _totalBlankFrames)
                 throws java.io.IOException

This method sets up for an AVI image write. This is only used for RGB images where only an imageA and no imageB will be present. The image will be written as a series of 2D images and a series of frames without data used for repeating existing frames. This method will use the first 2D image.

Parameters:

_imageA - First 2D image for AVI.

microSecPerFrame - Frame rate.

_totalDataFrames - Number of frames containing true data.

_totalBlankFrames - Number of frames that are "blank" and should be filled with previous frame's data.

Throws:

java.io.IOException - if there is an error writing the file.

setCompressionQuality

public void setCompressionQuality(float quality)

DOCUMENT ME!

Parameters:

quality - DOCUMENT ME!

setIsScript

public void setIsScript(boolean isScript)

DOCUMENT ME!

Parameters:

isScript - DOCUMENT ME!

setMicroSecPerFrame

public void setMicroSecPerFrame(int microSec)

DOCUMENT ME!

Parameters:

microSec - DOCUMENT ME!

setProgressBar

public void setProgressBar(ProgressBarInterface pBar)

DOCUMENT ME!

Parameters:

pBar - DOCUMENT ME!

setReadQT

public void setReadQT(boolean readQT)

DOCUMENT ME!

Parameters:

readQT - DOCUMENT ME!

setWriteQT

public void setWriteQT(boolean writeQuickTime)

DOCUMENT ME!

Parameters:

writeQuickTime - DOCUMENT ME!

writeBlankFrame

public void writeBlankFrame()
                     throws java.io.IOException

DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

writeDataFrame

public void writeDataFrame(ModelImage _imageA)
                    throws java.io.IOException

DOCUMENT ME!

Parameters:

_imageA - DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

writeImage

public boolean writeImage(ModelImage _imageA,
                          ModelImage _imageB,
                          ModelLUT _LUTa,
                          ModelLUT LUTb,
                          ModelRGB RGBTA,
                          ModelRGB RGBTB,
                          int red,
                          int green,
                          int blue,
                          float OPACITY,
                          float alphaBlend,
                          java.util.BitSet paintBitmap,
                          int compression)
                   throws java.io.IOException

This method writes an AVI image file.

Parameters:

_imageA - DOCUMENT ME!

_imageB - DOCUMENT ME!

_LUTa - DOCUMENT ME!

LUTb - DOCUMENT ME!

RGBTA - DOCUMENT ME!

RGBTB - DOCUMENT ME!

red - DOCUMENT ME!

green - DOCUMENT ME!

blue - DOCUMENT ME!

OPACITY - DOCUMENT ME!

alphaBlend - DOCUMENT ME!

paintBitmap - DOCUMENT ME!

compression - -1 = unchosen, 0 = 24 bit uncompressed RGB, 1 = 8 bit per pixel compressed RLE

Returns:

DOCUMENT ME!

Throws:

java.io.IOException - if there is an error writing the file.

createLUT

private byte[] createLUT()

Creates a LUT to write.

Returns:

DOCUMENT ME!

readHeader

public int readHeader()
               throws java.io.IOException

Reads the image header.

Returns:

DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

writeAVITriplet

private void writeAVITriplet(int timeSlice,
                             int slice,
                             ModelLUT LUTb,
                             int red,
                             int green,
                             int blue,
                             float opacityPrime,
                             float alphaBlend,
                             java.util.BitSet paintBitmap)
                      throws java.io.IOException

Writes the AVI BGR triplet.

Parameters:

timeSlice - t (time) slice to show

slice - z slice to show

LUTb - DOCUMENT ME!

red - DOCUMENT ME!

green - DOCUMENT ME!

blue - DOCUMENT ME!

opacityPrime - DOCUMENT ME!

alphaBlend - DOCUMENT ME!

paintBitmap - DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

writeAVITripletC

private void writeAVITripletC(int timeSlice,
                              int slice,
                              ModelRGB RGBTA,
                              ModelRGB RGBTB,
                              int red,
                              int green,
                              int blue,
                              float opacityPrime,
                              float alphaBlend,
                              java.util.BitSet paintBitmap)
                       throws java.io.IOException

Write BGR AVI triplet for color image.

Parameters:

timeSlice - t (time) slice to show

slice - z slice to show

RGBTA - DOCUMENT ME!

RGBTB - DOCUMENT ME!

red - DOCUMENT ME!

green - DOCUMENT ME!

blue - DOCUMENT ME!

opacityPrime - DOCUMENT ME!

alphaBlend - DOCUMENT ME!

paintBitmap - DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

writeAVITripletCFrames

private void writeAVITripletCFrames()
                             throws java.io.IOException

Write BGR AVI triplet for color image. Since this is a frame captured on screen, this method is much simpler.

Throws:

java.io.IOException - DOCUMENT ME!

writeidx1CHUNK

private void writeidx1CHUNK()
                     throws java.io.IOException

DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

writeRLE8

private void writeRLE8(int timeSlice,
                       int slice,
                       byte[] pixStore,
                       byte[] lastStore,
                       byte[] encodeStore)
                throws java.io.IOException

Writes the RLE8 encoded LUT index.

Parameters:

timeSlice - t (time) slice to show

slice - z slice to show

pixStore - DOCUMENT ME!

lastStore - DOCUMENT ME!

encodeStore - DOCUMENT ME!

Throws:

java.io.IOException - DOCUMENT ME!

readWriteImage

public boolean readWriteImage()
                       throws java.io.IOException

Throws:

java.io.IOException

writeIntW

public final void writeIntW(int data,
                            boolean bigEndian)
                     throws java.io.IOException

Writes an int as four bytes to a file.

Parameters:

data - Data to be written to file.

bigEndian - true indicates big endian byte order, false indicates little endian.

Throws:

java.io.IOException - if there is an error writing the file

writeShortW

public final void writeShortW(short data,
                              boolean bigEndian)
                       throws java.io.IOException

Writes a short as two bytes to a file.

Parameters:

data - Data to be written to file.

bigEndian - true indicates big endian byte order, false indicates little endian.

Throws:

java.io.IOException - if there is an error writing the file