java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogFRET

All Implemented Interfaces:

AlgorithmInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogFRET
extends JDialogBase
implements AlgorithmInterface, java.awt.event.ItemListener, java.awt.event.WindowListener
```
Dialog to get user input Fluorescence resonance energy transfer Algorithms are executed in their own thread.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.JRadioButton`	`backgroundButton`	DOCUMENT ME!
`private int`	`backgroundIndex`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`blueButton`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`colorGroup`	DOCUMENT ME!
`private int`	`colorsPresent`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxCostFunct`	DOCUMENT ME!
`private ViewJComponentEditImage`	`componentImage`	DOCUMENT ME!
`private ViewJComponentEditImage`	`componentPostImage`	DOCUMENT ME!
`private int`	`cost`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`createRegCheckBox`	DOCUMENT ME!
`private boolean`	`createRegImage`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`donorButton`	DOCUMENT ME!
`private int`	`donorIndex`	DOCUMENT ME!
`private AlgorithmFRETAcceptorPhotobleach`	`fretAlgo`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`greenButton`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private javax.swing.JComboBox`	`imageComboBox`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelCost`	DOCUMENT ME!
`private double`	`maxB`	DOCUMENT ME!
`private double`	`maxG`	DOCUMENT ME!
`private double`	`maxR`	DOCUMENT ME!
`private double`	`minB`	DOCUMENT ME!
`private double`	`minG`	DOCUMENT ME!
`private double`	`minR`	DOCUMENT ME!
`private int`	`nBoundingVOIs`	DOCUMENT ME!
`private ModelImage`	`postImage`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`redButton`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`regCheckBox`	DOCUMENT ME!
`private boolean`	`register`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.swing.JRadioButton`	`signalButton`	DOCUMENT ME!
`private int`	`signalIndex`	DOCUMENT ME!
`private ViewUserInterface`	`UI`	DOCUMENT ME!
`private boolean`	`useBlue`	DOCUMENT ME!
`private boolean`	`useGreen`	DOCUMENT ME!
`private boolean`	`useRed`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`VOIGroup`	DOCUMENT ME!
`private ViewVOIVector`	`VOIs`	DOCUMENT ME!
`private int`	`yPos`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogFRET(ModelImage image)`	Creates a new JDialogFRET object.
`JDialogFRET(java.awt.Frame theParentFrame, ModelImage im)`	Creates new dialog.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`private javax.swing.JComboBox`	`buildComboBox(ModelImage image)`	Builds a list of images.
`protected void`	`callAlgorithm()`	DOCUMENT ME!
`private void`	`init()`	Initializes GUI components and displays dialog.
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	itemStateChanged.
`void`	`setCost(int cost)`	DOCUMENT ME!
`void`	`setPostImage(ModelImage postImage)`	DOCUMENT ME!
`void`	`setRegister(boolean register)`	DOCUMENT ME!
`void`	`setUseBlue(boolean useBlue)`	DOCUMENT ME!
`void`	`setUseGreen(boolean useGreen)`	DOCUMENT ME!
`void`	`setUseRed(boolean useRed)`	DOCUMENT ME!
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Disposes of error dialog, then frame.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.WindowListener
windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - backgroundButton
```
private javax.swing.JRadioButton backgroundButton
```
    DOCUMENT ME!
  - backgroundIndex
```
private int backgroundIndex
```
    DOCUMENT ME!
  - blueButton
```
private javax.swing.JRadioButton blueButton
```
    DOCUMENT ME!
  - colorGroup
```
private javax.swing.ButtonGroup colorGroup
```
    DOCUMENT ME!
  - colorsPresent
```
private int colorsPresent
```
    DOCUMENT ME!
  - comboBoxCostFunct
```
private javax.swing.JComboBox comboBoxCostFunct
```
    DOCUMENT ME!
  - componentImage
```
private ViewJComponentEditImage componentImage
```
    DOCUMENT ME!
  - componentPostImage
```
private ViewJComponentEditImage componentPostImage
```
    DOCUMENT ME!
  - cost
```
private int cost
```
    DOCUMENT ME!
  - createRegCheckBox
```
private javax.swing.JCheckBox createRegCheckBox
```
    DOCUMENT ME!
  - createRegImage
```
private boolean createRegImage
```
    DOCUMENT ME!
  - donorButton
```
private javax.swing.JRadioButton donorButton
```
    DOCUMENT ME!
  - donorIndex
```
private int donorIndex
```
    DOCUMENT ME!
  - fretAlgo
```
private AlgorithmFRETAcceptorPhotobleach fretAlgo
```
    DOCUMENT ME!
  - greenButton
```
private javax.swing.JRadioButton greenButton
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - imageComboBox
```
private javax.swing.JComboBox imageComboBox
```
    DOCUMENT ME!
  - labelCost
```
private javax.swing.JLabel labelCost
```
    DOCUMENT ME!
  - maxR
```
private double maxR
```
    DOCUMENT ME!
  - maxG
```
private double maxG
```
    DOCUMENT ME!
  - maxB
```
private double maxB
```
    DOCUMENT ME!
  - minR
```
private double minR
```
    DOCUMENT ME!
  - minG
```
private double minG
```
    DOCUMENT ME!
  - minB
```
private double minB
```
    DOCUMENT ME!
  - nBoundingVOIs
```
private int nBoundingVOIs
```
    DOCUMENT ME!
  - postImage
```
private ModelImage postImage
```
    DOCUMENT ME!
  - redButton
```
private javax.swing.JRadioButton redButton
```
    DOCUMENT ME!
  - regCheckBox
```
private javax.swing.JCheckBox regCheckBox
```
    DOCUMENT ME!
  - register
```
private boolean register
```
    DOCUMENT ME!
  - signalButton
```
private javax.swing.JRadioButton signalButton
```
    DOCUMENT ME!
  - signalIndex
```
private int signalIndex
```
    DOCUMENT ME!
  - UI
```
private ViewUserInterface UI
```
    DOCUMENT ME!
  - useBlue
```
private boolean useBlue
```
    DOCUMENT ME!
  - useGreen
```
private boolean useGreen
```
    DOCUMENT ME!
  - useRed
```
private boolean useRed
```
    DOCUMENT ME!
  - VOIGroup
```
private javax.swing.ButtonGroup VOIGroup
```
    DOCUMENT ME!
  - VOIs
```
private ViewVOIVector VOIs
```
    DOCUMENT ME!
  - yPos
```
private int yPos
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogFRET
```
public JDialogFRET(ModelImage image)
```
    Creates a new JDialogFRET object.
    
    Parameters:
    
    image - DOCUMENT ME!
  - JDialogFRET
```
public JDialogFRET(java.awt.Frame theParentFrame,
                   ModelImage im)
```
    Creates new dialog.
    
    Parameters:
    
    theParentFrame - Parent frame
    
    im - Source image
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    itemStateChanged.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    event - DOCUMENT ME!
  - setCost
```
public void setCost(int cost)
```
    DOCUMENT ME!
    
    Parameters:
    
    cost - DOCUMENT ME!
  - setPostImage
```
public void setPostImage(ModelImage postImage)
```
    DOCUMENT ME!
    
    Parameters:
    
    postImage - DOCUMENT ME!
  - setRegister
```
public void setRegister(boolean register)
```
    DOCUMENT ME!
    
    Parameters:
    
    register - DOCUMENT ME!
  - setUseBlue
```
public void setUseBlue(boolean useBlue)
```
    DOCUMENT ME!
    
    Parameters:
    
    useBlue - DOCUMENT ME!
  - setUseGreen
```
public void setUseGreen(boolean useGreen)
```
    DOCUMENT ME!
    
    Parameters:
    
    useGreen - DOCUMENT ME!
  - setUseRed
```
public void setUseRed(boolean useRed)
```
    DOCUMENT ME!
    
    Parameters:
    
    useRed - DOCUMENT ME!
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Disposes of error dialog, then frame. Sets cancelled to true.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class JDialogBase
    
    Parameters:
    
    event - DOCUMENT ME!
  - callAlgorithm
```
protected void callAlgorithm()
```
    DOCUMENT ME!
  - buildComboBox
```
private javax.swing.JComboBox buildComboBox(ModelImage image)
```
    Builds a list of images. Returns combobox. List must be all color or all black and white.
    
    Parameters:
    
    image - DOCUMENT ME!
    
    Returns:
    
    Newly created combo box.
  - init
```
private void init()
```
    Initializes GUI components and displays dialog.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.

Class JDialogFRET

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.WindowListener

Field Detail

serialVersionUID

backgroundButton

backgroundIndex

blueButton

colorGroup

colorsPresent

comboBoxCostFunct

componentImage

componentPostImage

cost

createRegCheckBox

createRegImage

donorButton

donorIndex

fretAlgo

greenButton

image

imageComboBox

labelCost

maxR

maxG

maxB

minR

minG

minB

nBoundingVOIs

postImage

redButton

regCheckBox

register

signalButton

signalIndex

UI

useBlue

useGreen

useRed

VOIGroup

VOIs

yPos

Constructor Detail

JDialogFRET

JDialogFRET

Method Detail

actionPerformed

algorithmPerformed

itemStateChanged

setCost

setPostImage

setRegister

setUseBlue

setUseGreen

setUseRed

windowClosing

callAlgorithm