java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        gov.nih.mipav.view.ViewJFrameBase
        
        gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork.DTIColorDisplay

All Implemented Interfaces:

AlgorithmInterface, ViewImageUpdateInterface, java.awt.event.ActionListener, java.awt.event.ComponentListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class DTIColorDisplay
extends ViewJFrameBase
implements AlgorithmInterface, javax.swing.event.ChangeListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseWheelListener, java.awt.event.KeyListener, java.awt.event.FocusListener
```
Author:

pandyan This is the main dialog for the DTI Color Display References: Developed in concert with Sinisa Pajevic from the NIH/CIT/DCB/MSCL group, Lin-Ching Chang D.Sc., Carlo Pierpaoli MD Ph.D., and Lindsay Walker MS from the the NIH/NICHD/LIMB/STBB group and Olga Vogt from the NIH/CIT/DCB/ISL/BIRSS group: Mathematical and Statistical Computing Laboratory (MSCL) Biomedical Imaging Research Services Section (BIRSS) Imaging Sciences Laboratory (ISL) Division of Cumputational Bioscience (DCB) Center for Informational Technology (CIT) Section on Tissue Biophysics and Biomimetics (STBB) Laboratory of Integrative and Medical Biophysics (LIMB) National Institute of Child Health & Humann Development National Institutes of Health Publication Reference: S. Pajevic and C. Pierpaoli, "Color Schemes to Represent the Orientation of Anisotropic Tissues from Diffusion Tensor Data: Application to White Matter Fiber Tract Mapping in the Human Brain," Magnetic Resonance in Medicine, vol. 42, no. 3, pp. 526-540, 1999

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JFrame
  javax.swing.JFrame.AccessibleJFrame
- Nested classes/interfaces inherited from class java.awt.Frame
  java.awt.Frame.AccessibleAWTFrame
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private float`	`adjustExp`	adjust exp *
`private javax.swing.JPanel`	`adjustExpPanel`	panels *
`javax.swing.JSlider`	`adjustExpSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`adjustExpTextField`	textfields *
`private AlgorithmDTIColorDisplay`	`alg`	handle to the algorithm *
`private javax.swing.JButton`	`anisotropyBrowseButton`	buttons *
`private java.lang.String`	`anisotropyFilename`	names of eigenvector and anisotropy files*
`private ModelImage`	`anisotropyImage`	anisotropy src image *
`private javax.swing.JLabel`	`anisotropyLabel`	labels *
`private float`	`anisotropyMax`	anisotropy max *
`private javax.swing.JPanel`	`anisotropyMaxPanel`	panels *
`javax.swing.JSlider`	`anisotropyMaxSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`anisotropyMaxTextField`	textfields *
`private float`	`anisotropyMin`	anisotropy min *
`private javax.swing.JPanel`	`anisotropyMinPanel`	panels *
`javax.swing.JSlider`	`anisotropyMinSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`anisotropyMinTextField`	textfields *
`private javax.swing.JTextField`	`anisotropyPath`	textfields *
`private javax.swing.JPanel`	`bottomPanel`	panels *
`private javax.swing.JButton`	`captureImageButton`	buttons *
`private javax.swing.JPanel`	`colorPanel`	panels *
`private javax.swing.JPanel`	`colorRangePanel`	panels *
`javax.swing.JSlider`	`colorRangeSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`colorRangeTextField`	textfields *
`private ColorWheel`	`colorWheel`	Color Wheels *
`private javax.swing.JPanel`	`colorWheelChoicesPanel`	panels *
`private javax.swing.JComboBox`	`colorWheelComboBox`	color wheel choices combo box *
`private javax.swing.JPanel`	`colorWheelPanel`	panels *
`private ViewJComponentDTIImage`	`componentImage`	ViewJComponentDTIImage *
`private java.lang.String`	`currentColorWheelType`	String indicating current color wheel type *
`private java.awt.Rectangle`	`currentRectangle`	rectangle for screen capture*
`private javax.swing.JLabel`	`currentResultImageSlicesLabel`	labels *
`private javax.swing.JPanel`	`dimGreenPanel`	panels *
`javax.swing.JSlider`	`dimGreenSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`dimGreenTextField`	textfields *
`private javax.swing.JButton`	`eigenvectorBrowseButton`	buttons *
`private javax.swing.JLabel`	`eigenvectorLabel`	labels *
`private javax.swing.JTextField`	`eigenvectorPath`	textfields *
`private java.lang.String`	`eigvecFilename`	names of eigenvector and anisotropy files*
`private ModelImage`	`eigvecSrcImage`	eigenvector src image *
`private javax.swing.JPanel`	`filesPanel`	panels *
`private boolean`	`flag`	flag needed when performing restore defaults *
`private float`	`gamma`	gamma correction *
`private javax.swing.JPanel`	`gammaPanel`	panels *
`javax.swing.JSlider`	`gammaSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`gammaTextField`	textfields *
`private java.awt.GridBagConstraints`	`gbc`	GridbagConstraints *
`private java.awt.GridBagLayout`	`gbl`	GridBagLayout *
`protected float`	`heightResFactor`	Storage for correction parameters where datasets have non isotropic values.
`private javax.swing.JPanel`	`heuristicParametersPanel`	panels *
`protected float[]`	`imageBufferA`	Buffer used to store image intensities the presently viewed slice of image A.
`private java.io.BufferedReader`	`in`	Buffered Reader for loading params *
`private boolean`	`isMultiply`	boolean for truncate/multiply *
`private javax.swing.JButton`	`loadButton`	buttons *
`private ModelLUT`	`LUTa`	LUT of input image *
`private javax.swing.JButton`	`magButton`	buttons *
`private javax.swing.JLabel`	`magLabel`	labels *
`private javax.swing.JPanel`	`mainPanel`	panels *
`private float`	`maxAdjustExp`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxAdjustExpLabel`	labels *
`private float`	`maxAnisotropyMax`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxAnisotropyMaxLabel`	labels *
`private float`	`maxAnisotropyMin`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxAnisotropyMinLabel`	labels *
`private float`	`maxColorRange`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxColorRangeLabel`	labels *
`private float`	`maxDimGreen`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxDimGreenLabel`	labels *
`private float`	`maxGamma`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxGammaLabel`	labels *
`private javax.swing.JLabel`	`maxResultImageSlicesLabel`	labels *
`private float`	`maxSatBlue`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxSatBlueLabel`	labels *
`private float`	`maxSatVsTheta`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxSatVsThetaLabel`	labels *
`private float`	`maxStevensBeta`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`maxStevensBetaLabel`	labels *
`private float`	`minAdjustExp`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minAdjustExpLabel`	labels *
`private float`	`minAnisotropyMax`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minAnisotropyMaxLabel`	labels *
`private float`	`minAnisotropyMin`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minAnisotropyMinLabel`	labels *
`private float`	`minColorRange`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minColorRangeLabel`	labels *
`private float`	`minDimGreen`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minDimGreenLabel`	labels *
`private float`	`minGamma`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minGammaLabel`	labels *
`private javax.swing.JLabel`	`minResultImageSlicesLabel`	labels *
`private float`	`minSatBlue`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minSatBlueLabel`	labels *
`private float`	`minSatVsTheta`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minSatVsThetaLabel`	labels *
`private float`	`minStevensBeta`	mins and maxes for heuristic parameters*
`private javax.swing.JLabel`	`minStevensBetaLabel`	labels *
`private javax.swing.JRadioButton`	`multRadio`	radio buttons for truncate/multiply *
`protected int`	`nImage`	Number of slices in a 3D dataset.
`protected int`	`nTImage`	Number of time sequences in a 4D dataset.
`private int`	`numSlices`	num slices for result image *
`private javax.swing.JButton`	`okButton`	buttons *
`private javax.swing.JPanel`	`okPanel`	panels *
`private javax.swing.JPanel`	`optionsPanel`	panels *
`private java.io.BufferedWriter`	`out`	Buffered Writer for saving params *
`private float`	`pB`	blue saturation *
`private float`	`pC`	color range *
`private float`	`pG`	green saturation *
`protected int[]`	`pixBuffer`	Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data.
`private float`	`pS`	saturation vs theta *
`private javax.swing.JLabel`	`refLabel1`	labels *
`private javax.swing.JLabel`	`refLabel2`	labels *
`private javax.swing.JLabel`	`refLabel3`	labels *
`private javax.swing.JPanel`	`refPanel`	panels *
`protected float[]`	`resols`	Storage of the image voxel resolutions.
`private javax.swing.JButton`	`restoreDefaultsButton`	buttons *
`private javax.swing.JPanel`	`restoreDefaultsPanel`	panels *
`private ModelImage`	`resultImage`	result image *
`private javax.swing.JPanel`	`resultImagePanel`	panels *
`javax.swing.JSlider`	`resultImageSlider`	various sliders in dialog *
`private javax.swing.JPanel`	`resultImageSliderPanel`	panels *
`private javax.swing.JPanel`	`resultPanel`	panels *
`private javax.swing.JScrollPane`	`resultScrollPanel`	scroll pane for result image *
`private javax.swing.JPanel`	`satBluePanel`	panels *
`javax.swing.JSlider`	`satBlueSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`satBlueTextField`	textfields *
`private javax.swing.JPanel`	`satVsThetaPanel`	panels *
`javax.swing.JSlider`	`satVsThetaSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`satVsThetaTextField`	textfields *
`private javax.swing.JButton`	`saveButton`	buttons *
`private javax.swing.JPanel`	`saveLoadPanel`	panels *
`private float`	`stevensBeta`	steven's beta *
`private javax.swing.JPanel`	`stevensBetaPanel`	panels *
`javax.swing.JSlider`	`stevensBetaSlider`	various sliders in dialog *
`private javax.swing.JTextField`	`stevensBetaTextField`	textfields *
`private javax.swing.JPanel`	`tempPanel`	panels *
`private java.lang.String`	`title`	dialog title and version *
`private javax.swing.border.TitledBorder`	`titledBorder`	titled border for certain components *
`private ViewToolBarBuilder`	`toolbarBuilder`	ViewToolBarBuilder *
`private javax.swing.JPanel`	`toolbarPanel`	panels *
`private javax.swing.JPanel`	`topPanel`	panels *
`private javax.swing.JPanel`	`truncMultPanel`	panels *
`private javax.swing.ButtonGroup`	`truncMultRadioGroup`	radio group for truncate/multiply *
`private javax.swing.JRadioButton`	`truncRadio`	radio buttons for truncate/multiply *
`protected int`	`tSlice`	Image time sequence number of image that is displayed.
`private java.lang.String`	`type`	type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *
`protected int[]`	`units`	Storage of the resolution units of measure.
`private javax.swing.JButton`	`unMagButton`	buttons *
`protected float`	`widthResFactor`	Storage for correction parameters where datasets have non isotropic values.
`private float`	`zoom`	current zoom for result image *
`private javax.swing.JButton`	`zoomOneButton`	buttons *
`private int`	`zSlice`	current z slice *

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase
absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

DTIColorDisplay(boolean modal)
Constructor

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent e)`	action performed
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	algorithm performed
`protected void`	`callAlgorithm()`	call algorithm
`private boolean`	`captureImage()`	Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
`ModelImage`	`createRGBImage()`	test code for creating rgb image based on eigvev and anisot
`void`	`finalize()`	finalize
`void`	`focusGained(java.awt.event.FocusEvent event)`	focus gained
`void`	`focusLost(java.awt.event.FocusEvent event)`	focus lost
`ViewControlsImage`	`getControls()`	get controls
`ModelImage`	`getImageA()`	get image a
`ModelImage`	`getImageB()`	get image b
`ModelRGB`	`getRGBTA()`	Gets the RGB LUT table for ARGB image A.
`void`	`init()`	init
`void`	`initExtentsVariables(ModelImage img)`	Initializes the variables based on the image extents.
`protected static float[]`	`initImageBuffer(int[] extents, boolean isColor)`	Create the intensity buffer for an image.
`protected static int[]`	`initNumSlices(ModelImage img)`	Get the total number of time slices and volume slices.
`protected static int[]`	`initPixelBuffer(int[] extents)`	Create the pixel buffer for an image.
`protected static float[]`	`initResFactor(float[] imgResols, int[] imgUnits)`	Get the resolution correction needed for non-isotropic images.
`protected static float[]`	`initResolutions(ModelImage img)`	init resolutions
`static ModelRGB`	`initRGB(ModelImage img)`	Creates and initializes the ModelRGB for an image.
`protected static int[]`	`initSlicePositions(ModelImage img)`	Get the initial time and volume slice positions.
`protected static int[]`	`initUnits(ModelImage img)`	init units
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	item state changed
`void`	`keyPressed(java.awt.event.KeyEvent event)`	key pressed
`void`	`keyReleased(java.awt.event.KeyEvent event)`	key released
`void`	`keyTyped(java.awt.event.KeyEvent event)`	key typed
`void`	`loadAnisotropyFile()`	browses and loads anisotropy file
`void`	`loadEigenVectorFile()`	browses and loads eigen vector file
`void`	`loadParams()`	loads heuristic parameter values
`void`	`magImage()`	magnifies image
`void`	`mouseClicked(java.awt.event.MouseEvent event)`	mouse clicked
`void`	`mouseEntered(java.awt.event.MouseEvent event)`	mouse entered
`void`	`mouseExited(java.awt.event.MouseEvent event)`	mouse exited
`void`	`mousePressed(java.awt.event.MouseEvent event)`	mouse pressed
`void`	`mouseReleased(java.awt.event.MouseEvent e)`	mouse released
`void`	`mouseWheelMoved(java.awt.event.MouseWheelEvent event)`	mouse wheel moved
`void`	`removeControls()`	remove controls
`void`	`restoreDefaults()`	restore default parameters
`void`	`saveParams()`	save heuristic parameters
`void`	`setActiveImage(int active)`	set active image
`void`	`setAlphaBlend(int value)`	set alpha blend
`void`	`setControls()`	set controls
`void`	`setEnabled(boolean flag)`	set enabled
`void`	`setImageB(ModelImage imageB)`	set image b
`void`	`setPaintBitmapSwitch(boolean flag)`	set paint bitmap switch
`void`	`setRGBTA(ModelRGB RGBT)`	Sets the RGB LUT table for ARGB image A.
`void`	`setRGBTB(ModelRGB RGBT)`	set rgbtb
`void`	`setSlice(int slice)`	set slice
`void`	`setTimeSlice(int tSlice)`	set time slice
`void`	`setTitle()`	set title
`void`	`stateChanged(javax.swing.event.ChangeEvent e)`	state changed
`void`	`unMagImage()`	un-magnifies image
`void`	`updateCurrentColorWheel()`	update current color wheel
`boolean`	`updateImageExtents()`	update image extents
`boolean`	`updateImages()`	update images
`boolean`	`updateImages(boolean flag)`	update images
`boolean`	`updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean flag, int interpMode)`	update images
`float`	`validateCurrentNum(java.lang.String numString, float min, float max)`	validate current number
`void`	`windowClosing(java.awt.event.WindowEvent event)`	window closing
`void`	`zoomOne()`	sets image zoom to 1

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase
about, buildLabelPanel, canCloseImageBAfterLoad, close, close, closeImageB, componentHidden, componentMoved, componentResized, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTa, setLUTb, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JFrame
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

- Field Detail
  - title
```
private java.lang.String title
```
    dialog title and version *
  - mainPanel
```
private javax.swing.JPanel mainPanel
```
    panels *
  - topPanel
```
private javax.swing.JPanel topPanel
```
    panels *
  - filesPanel
```
private javax.swing.JPanel filesPanel
```
    panels *
  - okPanel
```
private javax.swing.JPanel okPanel
```
    panels *
  - bottomPanel
```
private javax.swing.JPanel bottomPanel
```
    panels *
  - refPanel
```
private javax.swing.JPanel refPanel
```
    panels *
  - colorPanel
```
private javax.swing.JPanel colorPanel
```
    panels *
  - colorWheelPanel
```
private javax.swing.JPanel colorWheelPanel
```
    panels *
  - resultImagePanel
```
private javax.swing.JPanel resultImagePanel
```
    panels *
  - optionsPanel
```
private javax.swing.JPanel optionsPanel
```
    panels *
  - colorWheelChoicesPanel
```
private javax.swing.JPanel colorWheelChoicesPanel
```
    panels *
  - heuristicParametersPanel
```
private javax.swing.JPanel heuristicParametersPanel
```
    panels *
  - anisotropyMaxPanel
```
private javax.swing.JPanel anisotropyMaxPanel
```
    panels *
  - anisotropyMinPanel
```
private javax.swing.JPanel anisotropyMinPanel
```
    panels *
  - gammaPanel
```
private javax.swing.JPanel gammaPanel
```
    panels *
  - stevensBetaPanel
```
private javax.swing.JPanel stevensBetaPanel
```
    panels *
  - satBluePanel
```
private javax.swing.JPanel satBluePanel
```
    panels *
  - dimGreenPanel
```
private javax.swing.JPanel dimGreenPanel
```
    panels *
  - colorRangePanel
```
private javax.swing.JPanel colorRangePanel
```
    panels *
  - satVsThetaPanel
```
private javax.swing.JPanel satVsThetaPanel
```
    panels *
  - resultPanel
```
private javax.swing.JPanel resultPanel
```
    panels *
  - resultImageSliderPanel
```
private javax.swing.JPanel resultImageSliderPanel
```
    panels *
  - tempPanel
```
private javax.swing.JPanel tempPanel
```
    panels *
  - toolbarPanel
```
private javax.swing.JPanel toolbarPanel
```
    panels *
  - adjustExpPanel
```
private javax.swing.JPanel adjustExpPanel
```
    panels *
  - truncMultPanel
```
private javax.swing.JPanel truncMultPanel
```
    panels *
  - restoreDefaultsPanel
```
private javax.swing.JPanel restoreDefaultsPanel
```
    panels *
  - saveLoadPanel
```
private javax.swing.JPanel saveLoadPanel
```
    panels *
  - eigenvectorLabel
```
private javax.swing.JLabel eigenvectorLabel
```
    labels *
  - anisotropyLabel
```
private javax.swing.JLabel anisotropyLabel
```
    labels *
  - minAnisotropyMaxLabel
```
private javax.swing.JLabel minAnisotropyMaxLabel
```
    labels *
  - maxAnisotropyMaxLabel
```
private javax.swing.JLabel maxAnisotropyMaxLabel
```
    labels *
  - minAnisotropyMinLabel
```
private javax.swing.JLabel minAnisotropyMinLabel
```
    labels *
  - maxAnisotropyMinLabel
```
private javax.swing.JLabel maxAnisotropyMinLabel
```
    labels *
  - minGammaLabel
```
private javax.swing.JLabel minGammaLabel
```
    labels *
  - maxGammaLabel
```
private javax.swing.JLabel maxGammaLabel
```
    labels *
  - minStevensBetaLabel
```
private javax.swing.JLabel minStevensBetaLabel
```
    labels *
  - maxStevensBetaLabel
```
private javax.swing.JLabel maxStevensBetaLabel
```
    labels *
  - minSatBlueLabel
```
private javax.swing.JLabel minSatBlueLabel
```
    labels *
  - maxSatBlueLabel
```
private javax.swing.JLabel maxSatBlueLabel
```
    labels *
  - minDimGreenLabel
```
private javax.swing.JLabel minDimGreenLabel
```
    labels *
  - maxDimGreenLabel
```
private javax.swing.JLabel maxDimGreenLabel
```
    labels *
  - minColorRangeLabel
```
private javax.swing.JLabel minColorRangeLabel
```
    labels *
  - maxColorRangeLabel
```
private javax.swing.JLabel maxColorRangeLabel
```
    labels *
  - minSatVsThetaLabel
```
private javax.swing.JLabel minSatVsThetaLabel
```
    labels *
  - maxSatVsThetaLabel
```
private javax.swing.JLabel maxSatVsThetaLabel
```
    labels *
  - minResultImageSlicesLabel
```
private javax.swing.JLabel minResultImageSlicesLabel
```
    labels *
  - maxResultImageSlicesLabel
```
private javax.swing.JLabel maxResultImageSlicesLabel
```
    labels *
  - currentResultImageSlicesLabel
```
private javax.swing.JLabel currentResultImageSlicesLabel
```
    labels *
  - magLabel
```
private javax.swing.JLabel magLabel
```
    labels *
  - refLabel1
```
private javax.swing.JLabel refLabel1
```
    labels *
  - refLabel2
```
private javax.swing.JLabel refLabel2
```
    labels *
  - refLabel3
```
private javax.swing.JLabel refLabel3
```
    labels *
  - minAdjustExpLabel
```
private javax.swing.JLabel minAdjustExpLabel
```
    labels *
  - maxAdjustExpLabel
```
private javax.swing.JLabel maxAdjustExpLabel
```
    labels *
  - minAnisotropyMax
```
private float minAnisotropyMax
```
    mins and maxes for heuristic parameters*
  - maxAnisotropyMax
```
private float maxAnisotropyMax
```
    mins and maxes for heuristic parameters*
  - minAnisotropyMin
```
private float minAnisotropyMin
```
    mins and maxes for heuristic parameters*
  - maxAnisotropyMin
```
private float maxAnisotropyMin
```
    mins and maxes for heuristic parameters*
  - minGamma
```
private float minGamma
```
    mins and maxes for heuristic parameters*
  - maxGamma
```
private float maxGamma
```
    mins and maxes for heuristic parameters*
  - minStevensBeta
```
private float minStevensBeta
```
    mins and maxes for heuristic parameters*
  - maxStevensBeta
```
private float maxStevensBeta
```
    mins and maxes for heuristic parameters*
  - minSatBlue
```
private float minSatBlue
```
    mins and maxes for heuristic parameters*
  - maxSatBlue
```
private float maxSatBlue
```
    mins and maxes for heuristic parameters*
  - minDimGreen
```
private float minDimGreen
```
    mins and maxes for heuristic parameters*
  - maxDimGreen
```
private float maxDimGreen
```
    mins and maxes for heuristic parameters*
  - minColorRange
```
private float minColorRange
```
    mins and maxes for heuristic parameters*
  - maxColorRange
```
private float maxColorRange
```
    mins and maxes for heuristic parameters*
  - minSatVsTheta
```
private float minSatVsTheta
```
    mins and maxes for heuristic parameters*
  - maxSatVsTheta
```
private float maxSatVsTheta
```
    mins and maxes for heuristic parameters*
  - minAdjustExp
```
private float minAdjustExp
```
    mins and maxes for heuristic parameters*
  - maxAdjustExp
```
private float maxAdjustExp
```
    mins and maxes for heuristic parameters*
  - resultScrollPanel
```
private javax.swing.JScrollPane resultScrollPanel
```
    scroll pane for result image *
  - eigenvectorPath
```
private javax.swing.JTextField eigenvectorPath
```
    textfields *
  - anisotropyPath
```
private javax.swing.JTextField anisotropyPath
```
    textfields *
  - anisotropyMaxTextField
```
private javax.swing.JTextField anisotropyMaxTextField
```
    textfields *
  - anisotropyMinTextField
```
private javax.swing.JTextField anisotropyMinTextField
```
    textfields *
  - gammaTextField
```
private javax.swing.JTextField gammaTextField
```
    textfields *
  - stevensBetaTextField
```
private javax.swing.JTextField stevensBetaTextField
```
    textfields *
  - satBlueTextField
```
private javax.swing.JTextField satBlueTextField
```
    textfields *
  - dimGreenTextField
```
private javax.swing.JTextField dimGreenTextField
```
    textfields *
  - colorRangeTextField
```
private javax.swing.JTextField colorRangeTextField
```
    textfields *
  - satVsThetaTextField
```
private javax.swing.JTextField satVsThetaTextField
```
    textfields *
  - adjustExpTextField
```
private javax.swing.JTextField adjustExpTextField
```
    textfields *
  - eigenvectorBrowseButton
```
private javax.swing.JButton eigenvectorBrowseButton
```
    buttons *
  - anisotropyBrowseButton
```
private javax.swing.JButton anisotropyBrowseButton
```
    buttons *
  - okButton
```
private javax.swing.JButton okButton
```
    buttons *
  - magButton
```
private javax.swing.JButton magButton
```
    buttons *
  - unMagButton
```
private javax.swing.JButton unMagButton
```
    buttons *
  - zoomOneButton
```
private javax.swing.JButton zoomOneButton
```
    buttons *
  - captureImageButton
```
private javax.swing.JButton captureImageButton
```
    buttons *
  - restoreDefaultsButton
```
private javax.swing.JButton restoreDefaultsButton
```
    buttons *
  - saveButton
```
private javax.swing.JButton saveButton
```
    buttons *
  - loadButton
```
private javax.swing.JButton loadButton
```
    buttons *
  - eigvecSrcImage
```
private ModelImage eigvecSrcImage
```
    eigenvector src image *
  - anisotropyImage
```
private ModelImage anisotropyImage
```
    anisotropy src image *
  - eigvecFilename
```
private java.lang.String eigvecFilename
```
    names of eigenvector and anisotropy files*
  - anisotropyFilename
```
private java.lang.String anisotropyFilename
```
    names of eigenvector and anisotropy files*
  - resultImage
```
private ModelImage resultImage
```
    result image *
  - LUTa
```
private ModelLUT LUTa
```
    LUT of input image *
  - colorWheel
```
private ColorWheel colorWheel
```
    Color Wheels *
  - alg
```
private AlgorithmDTIColorDisplay alg
```
    handle to the algorithm *
  - gbl
```
private java.awt.GridBagLayout gbl
```
    GridBagLayout *
  - gbc
```
private java.awt.GridBagConstraints gbc
```
    GridbagConstraints *
  - anisotropyMaxSlider
```
public javax.swing.JSlider anisotropyMaxSlider
```
    various sliders in dialog *
  - anisotropyMinSlider
```
public javax.swing.JSlider anisotropyMinSlider
```
    various sliders in dialog *
  - gammaSlider
```
public javax.swing.JSlider gammaSlider
```
    various sliders in dialog *
  - stevensBetaSlider
```
public javax.swing.JSlider stevensBetaSlider
```
    various sliders in dialog *
  - satBlueSlider
```
public javax.swing.JSlider satBlueSlider
```
    various sliders in dialog *
  - dimGreenSlider
```
public javax.swing.JSlider dimGreenSlider
```
    various sliders in dialog *
  - colorRangeSlider
```
public javax.swing.JSlider colorRangeSlider
```
    various sliders in dialog *
  - satVsThetaSlider
```
public javax.swing.JSlider satVsThetaSlider
```
    various sliders in dialog *
  - resultImageSlider
```
public javax.swing.JSlider resultImageSlider
```
    various sliders in dialog *
  - adjustExpSlider
```
public javax.swing.JSlider adjustExpSlider
```
    various sliders in dialog *
  - titledBorder
```
private javax.swing.border.TitledBorder titledBorder
```
    titled border for certain components *
  - colorWheelComboBox
```
private javax.swing.JComboBox colorWheelComboBox
```
    color wheel choices combo box *
  - anisotropyMax
```
private float anisotropyMax
```
    anisotropy max *
  - anisotropyMin
```
private float anisotropyMin
```
    anisotropy min *
  - adjustExp
```
private float adjustExp
```
    adjust exp *
  - gamma
```
private float gamma
```
    gamma correction *
  - stevensBeta
```
private float stevensBeta
```
    steven's beta *
  - pB
```
private float pB
```
    blue saturation *
  - pG
```
private float pG
```
    green saturation *
  - pC
```
private float pC
```
    color range *
  - pS
```
private float pS
```
    saturation vs theta *
  - componentImage
```
private ViewJComponentDTIImage componentImage
```
    ViewJComponentDTIImage *
  - imageBufferA
```
protected float[] imageBufferA
```
    Buffer used to store image intensities the presently viewed slice of image A.
  - resols
```
protected float[] resols
```
    Storage of the image voxel resolutions. One resolution value per dimension.
  - pixBuffer
```
protected int[] pixBuffer
```
    Integer buffer (4 bytes that stores the concatenated Alpha (1 byte), Red (1 byte), Green ( 1 byte ), Blue (1 byte ) data. The ARGB values are generated by using the imageA intensities as a index into a LUT.
  - units
```
protected int[] units
```
    Storage of the resolution units of measure. For example, mm, cm, inches ...
  - zSlice
```
private int zSlice
```
    current z slice *
  - widthResFactor
```
protected float widthResFactor
```
    Storage for correction parameters where datasets have non isotropic values.
  - heightResFactor
```
protected float heightResFactor
```
    Storage for correction parameters where datasets have non isotropic values.
  - tSlice
```
protected int tSlice
```
    Image time sequence number of image that is displayed. Zero indexed based.
  - nImage
```
protected int nImage
```
    Number of slices in a 3D dataset.
  - nTImage
```
protected int nTImage
```
    Number of time sequences in a 4D dataset.
  - type
```
private java.lang.String type
```
    type of color wheel ABSVAL, NOSYMM, ROTATIONALSYMM, MIRRORSYMM *
  - toolbarBuilder
```
private ViewToolBarBuilder toolbarBuilder
```
    ViewToolBarBuilder *
  - zoom
```
private float zoom
```
    current zoom for result image *
  - numSlices
```
private int numSlices
```
    num slices for result image *
  - currentRectangle
```
private java.awt.Rectangle currentRectangle
```
    rectangle for screen capture*
  - truncMultRadioGroup
```
private javax.swing.ButtonGroup truncMultRadioGroup
```
    radio group for truncate/multiply *
  - truncRadio
```
private javax.swing.JRadioButton truncRadio
```
    radio buttons for truncate/multiply *
  - multRadio
```
private javax.swing.JRadioButton multRadio
```
    radio buttons for truncate/multiply *
  - isMultiply
```
private boolean isMultiply
```
    boolean for truncate/multiply *
  - flag
```
private boolean flag
```
    flag needed when performing restore defaults *
  - in
```
private java.io.BufferedReader in
```
    Buffered Reader for loading params *
  - out
```
private java.io.BufferedWriter out
```
    Buffered Writer for saving params *
  - currentColorWheelType
```
private java.lang.String currentColorWheelType
```
    String indicating current color wheel type *
- Constructor Detail
  - DTIColorDisplay
```
public DTIColorDisplay(boolean modal)
```
    Constructor
- Method Detail
  - init
```
public void init()
```
    init
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent e)
```
    action performed
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Specified by:
    
    actionPerformed in class ViewJFrameBase
    
    Parameters:
    
    e - the event from the UI
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    algorithm performed
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - the algorithm which has just completed
  - createRGBImage
```
public ModelImage createRGBImage()
```
    test code for creating rgb image based on eigvev and anisot
  - callAlgorithm
```
protected void callAlgorithm()
```
    call algorithm
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent e)
```
    state changed
    
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
    
    Overrides:
    
    stateChanged in class ViewJFrameBase
    
    Parameters:
    
    e - the change event
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    item state changed
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
  - updateCurrentColorWheel
```
public void updateCurrentColorWheel()
```
    update current color wheel
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent event)
```
    mouse clicked
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent event)
```
    mouse entered
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent event)
```
    mouse exited
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent event)
```
    mouse pressed
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
    mouse released
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
  - loadEigenVectorFile
```
public void loadEigenVectorFile()
```
    browses and loads eigen vector file
  - loadAnisotropyFile
```
public void loadAnisotropyFile()
```
    browses and loads anisotropy file
  - magImage
```
public void magImage()
```
    magnifies image
  - unMagImage
```
public void unMagImage()
```
    un-magnifies image
  - zoomOne
```
public void zoomOne()
```
    sets image zoom to 1
  - restoreDefaults
```
public void restoreDefaults()
```
    restore default parameters
  - saveParams
```
public void saveParams()
```
    save heuristic parameters
  - loadParams
```
public void loadParams()
```
    loads heuristic parameter values
  - captureImage
```
private boolean captureImage()
```
    Scrolls through all z slices of a 3d/4d image and captures them into a new ARGB ModelImage, then puts the ModelImage in a ViewJFrameImage.
    
    Returns:
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    window closing
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class ViewJFrameBase
    
    Parameters:
    
    event - the window event that triggered this method
  - mouseWheelMoved
```
public void mouseWheelMoved(java.awt.event.MouseWheelEvent event)
```
    mouse wheel moved
    
    Specified by:
    
    mouseWheelMoved in interface java.awt.event.MouseWheelListener
    
    Parameters:
    
    event -
  - keyTyped
```
public void keyTyped(java.awt.event.KeyEvent event)
```
    key typed
    
    Specified by:
    
    keyTyped in interface java.awt.event.KeyListener
  - focusLost
```
public void focusLost(java.awt.event.FocusEvent event)
```
    focus lost
    
    Specified by:
    
    focusLost in interface java.awt.event.FocusListener
  - validateCurrentNum
```
public float validateCurrentNum(java.lang.String numString,
                                float min,
                                float max)
```
    validate current number
    
    Parameters:
    
    numString -
    
    min -
    
    max -
    
    Returns:
  - initImageBuffer
```
protected static float[] initImageBuffer(int[] extents,
                                         boolean isColor)
```
    Create the intensity buffer for an image.
    
    Parameters:
    
    extents - the extents of the image
    
    isColor - whether the image is in color
    
    Returns:
    
    a buffer which is big enough to contain the image intensity data
  - initPixelBuffer
```
protected static int[] initPixelBuffer(int[] extents)
```
    Create the pixel buffer for an image.
    
    Parameters:
    
    extents - the extents of the image
    
    Returns:
    
    a buffer which is big enough to contain the image pixel data
  - initResolutions
```
protected static float[] initResolutions(ModelImage img)
```
    init resolutions
    
    Parameters:
    
    img -
    
    Returns:
  - initUnits
```
protected static int[] initUnits(ModelImage img)
```
    init units
    
    Parameters:
    
    img -
    
    Returns:
  - initResFactor
```
protected static float[] initResFactor(float[] imgResols,
                                       int[] imgUnits)
```
    Get the resolution correction needed for non-isotropic images.
    
    Parameters:
    
    imgResols - the image resolution
    
    imgUnits - the image units of measure
    
    Returns:
    
    the resolution correction factor in the x (the first element) and y (the second element) dimensions
  - initRGB
```
public static ModelRGB initRGB(ModelImage img)
                        throws java.lang.OutOfMemoryError
```
    Creates and initializes the ModelRGB for an image.
    
    Parameters:
    
    img - the image to create a ModelRGB for
    
    Returns:
    
    a ModelRGB for the image img (null if NOT a color image)
    
    Throws:
    
    java.lang.OutOfMemoryError - if enough memory cannot be allocated for this method
  - initExtentsVariables
```
public void initExtentsVariables(ModelImage img)
```
    Initializes the variables based on the image extents. (i.e. number of slices, number of time slices, the initial z-slice, etc.
    
    Parameters:
    
    img - the image to set the extent variables for
  - initSlicePositions
```
protected static int[] initSlicePositions(ModelImage img)
```
    Get the initial time and volume slice positions.
    
    Parameters:
    
    img - the image to get the slice positions of
    
    Returns:
    
    an array containing the slice in the volume (in the first element) and the time slice (in the second element)
  - initNumSlices
```
protected static int[] initNumSlices(ModelImage img)
```
    Get the total number of time slices and volume slices.
    
    Parameters:
    
    img - the image to get the slices of
    
    Returns:
    
    an array containing the number of volume slices (in the first element) and the number of time slices in the image (in the second element)
  - finalize
```
public void finalize()
```
    finalize
    
    Overrides:
    
    finalize in class ViewJFrameBase
  - getRGBTA
```
public ModelRGB getRGBTA()
```
    Gets the RGB LUT table for ARGB image A.
    
    Overrides:
    
    getRGBTA in class ViewJFrameBase
    
    Returns:
    
    RGBT the new RGB LUT to be applied to the image
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
    Sets the RGB LUT table for ARGB image A.
    
    Specified by:
    
    setRGBTA in class ViewJFrameBase
    
    Parameters:
    
    RGBT - the new RGB LUT to be applied to the image
  - getControls
```
public ViewControlsImage getControls()
```
    get controls
    
    Specified by:
    
    getControls in class ViewJFrameBase
    
    Returns:
    
    the frame's image controls
  - getImageA
```
public ModelImage getImageA()
```
    get image a
    
    Specified by:
    
    getImageA in class ViewJFrameBase
    
    Returns:
    
    imageA
  - getImageB
```
public ModelImage getImageB()
```
    get image b
    
    Specified by:
    
    getImageB in class ViewJFrameBase
    
    Returns:
    
    imageB
  - removeControls
```
public void removeControls()
```
    remove controls
    
    Specified by:
    
    removeControls in class ViewJFrameBase
  - setActiveImage
```
public void setActiveImage(int active)
```
    set active image
    
    Specified by:
    
    setActiveImage in class ViewJFrameBase
    
    Parameters:
    
    active - IMAGE_A or IMAGE_B
  - setAlphaBlend
```
public void setAlphaBlend(int value)
```
    set alpha blend
    
    Specified by:
    
    setAlphaBlend in class ViewJFrameBase
    
    Parameters:
    
    value - amount [0,100] that is the percentage of Image A to be displayed and (1-percentage) of Image B to be displayed
  - setControls
```
public void setControls()
```
    set controls
    
    Specified by:
    
    setControls in class ViewJFrameBase
  - setEnabled
```
public void setEnabled(boolean flag)
```
    set enabled
    
    Specified by:
    
    setEnabled in class ViewJFrameBase
    
    Parameters:
    
    flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified
  - setImageB
```
public void setImageB(ModelImage imageB)
```
    set image b
    
    Specified by:
    
    setImageB in class ViewJFrameBase
    
    Parameters:
    
    imageB - The image to make image-B in this frame.
  - setPaintBitmapSwitch
```
public void setPaintBitmapSwitch(boolean flag)
```
    set paint bitmap switch
    
    Specified by:
    
    setPaintBitmapSwitch in class ViewJFrameBase
    
    Parameters:
    
    flag - if true do not getMask on a setActiveImage command
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
    set rgbtb
    
    Specified by:
    
    setRGBTB in class ViewJFrameBase
    
    Parameters:
    
    RGBT - the RGB table to use for image B
  - setTitle
```
public void setTitle()
```
    set title
    
    Specified by:
    
    setTitle in class ViewJFrameBase
  - updateImageExtents
```
public boolean updateImageExtents()
```
    update image extents
    
    Specified by:
    
    updateImageExtents in interface ViewImageUpdateInterface
    
    Specified by:
    
    updateImageExtents in class ViewJFrameBase
    
    Returns:
    
    true if the update was successful, false otherwise
    
    See Also:
    
    ViewImageUpdateInterface
  - setSlice
```
public void setSlice(int slice)
```
    set slice
    
    Specified by:
    
    setSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    slice - Current slice
  - setTimeSlice
```
public void setTimeSlice(int tSlice)
```
    set time slice
    
    Specified by:
    
    setTimeSlice in interface ViewImageUpdateInterface
    
    Parameters:
    
    tSlice - Current time volume
  - updateImages
```
public boolean updateImages()
```
    update images
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(boolean flag)
```
    update images
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    flag - forces show to re import image and calc. java image
    
    Returns:
    
    boolean confirming successful update
  - updateImages
```
public boolean updateImages(ModelLUT LUTa,
                            ModelLUT LUTb,
                            boolean flag,
                            int interpMode)
```
    update images
    
    Specified by:
    
    updateImages in interface ViewImageUpdateInterface
    
    Parameters:
    
    LUTa - LUT used to update imageA
    
    LUTb - LUT used to update imageB
    
    flag - forces show to re import image and calc. java image
    
    interpMode - image interpolation method (Nearest or Smooth)
    
    Returns:
    
    boolean confirming a successful update
  - focusGained
```
public void focusGained(java.awt.event.FocusEvent event)
```
    focus gained
    
    Specified by:
    
    focusGained in interface java.awt.event.FocusListener
  - keyPressed
```
public void keyPressed(java.awt.event.KeyEvent event)
```
    key pressed
    
    Specified by:
    
    keyPressed in interface java.awt.event.KeyListener
  - keyReleased
```
public void keyReleased(java.awt.event.KeyEvent event)
```
    key released
    
    Specified by:
    
    keyReleased in interface java.awt.event.KeyListener

Class DTIColorDisplay

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

title

mainPanel

topPanel

filesPanel

okPanel

bottomPanel

refPanel

colorPanel

colorWheelPanel

resultImagePanel

optionsPanel

colorWheelChoicesPanel

heuristicParametersPanel

anisotropyMaxPanel

anisotropyMinPanel

gammaPanel

stevensBetaPanel

satBluePanel

dimGreenPanel

colorRangePanel

satVsThetaPanel

resultPanel

resultImageSliderPanel

tempPanel

toolbarPanel

adjustExpPanel

truncMultPanel

restoreDefaultsPanel

saveLoadPanel

eigenvectorLabel

anisotropyLabel

minAnisotropyMaxLabel

maxAnisotropyMaxLabel

minAnisotropyMinLabel

maxAnisotropyMinLabel

minGammaLabel

maxGammaLabel

minStevensBetaLabel

maxStevensBetaLabel

minSatBlueLabel

maxSatBlueLabel

minDimGreenLabel

maxDimGreenLabel

minColorRangeLabel

maxColorRangeLabel

minSatVsThetaLabel

maxSatVsThetaLabel

minResultImageSlicesLabel

maxResultImageSlicesLabel

currentResultImageSlicesLabel

magLabel

refLabel1

refLabel2

refLabel3

minAdjustExpLabel