java.lang.Object
- WildMagic.LibApplications.OpenGLApplication.Application
- - WildMagic.LibApplications.OpenGLApplication.JavaApplication
  - - WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    - - gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
      - gov.nih.mipav.view.renderer.WildMagic.flythroughview.FlyThroughRender

All Implemented Interfaces:

com.jogamp.opengl.GLEventListener, SpaceNavigatorListener, FlyThroughRenderInterface, FlyPathBehavior_WM.Callback, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.io.Serializable, java.util.EventListener
```
public class FlyThroughRender
extends GPURenderBase
implements FlyThroughRenderInterface, FlyPathBehavior_WM.Callback, com.jogamp.opengl.GLEventListener, java.awt.event.MouseWheelListener
```
See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`(package private) class`	`FlyThroughRender.MouseWheel`	Mouse middle button wheel roller event handler.
`(package private) class`	`FlyThroughRender.RightMouse`	RightMouse press event handler.
`(package private) class`	`FlyThroughRender.RightMouseDragged`	Right mouse button press down and drag event handler.
`static class`	`FlyThroughRender.SetupOptions`

Field Summary

Fields
Modifier and Type	Field	Description
`static int`	`lookdown`
`static int`	`lookleft`
`static int`	`lookright`
`static int`	`lookup`
`private int[]`	`m_aiBranchIndexUnvisitedMax`	This is the range of path samples for each branch that are unvisited.
`private int[]`	`m_aiBranchIndexUnvisitedMin`	This is the range of path samples for each branch that are unvisited.
`private WildMagic.LibFoundation.Mathematics.ColorRGB[]`	`m_akColorBackup`	Original surface color for undoing the pseudo-color curvature map.
`private int`	`m_iLastSelectedBranchIndex`	Keep track of the last branch that was selected (at a branch point).
`private FlyPathAnnotateList_WM`	`m_kAnnotateList`	Annotations along the fly path.
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`m_kCenter`	Center of Mesh
`private JPanelVirtualEndoscopySetup_WM`	`m_kControlFrame`	This is the control frame which may need to be updated as the view changes.
`private MjCorticalMesh_WM`	`m_kCortical`	Calculating the mesh curvatures.
`private FlyPathBehavior_WM`	`m_kFlyPathBehavior`	Fly path behavior.
`private FlyPathGraphCurve`	`m_kFlyPathGraphCurve`	Fly path curve.
`private WildMagic.LibGraphics.Rendering.Light`	`m_kLight`	Lighting in the scene.
`private SurfaceLightingEffect`	`m_kLightShader`	Lighting effect.
`private ModelImage`	`m_kMaskImage`	ModelImage used to generate the fly path.
`private ModelLUT`	`m_kMeanCurvaturesLUT`	kMean curvature LUT.
`private WildMagic.LibFoundation.Mathematics.ColorRGB`	`m_kNormalColorPathUnvisited`	Color for the parts of the path that have not yet been visited (Dark Green)
`private WildMagic.LibFoundation.Mathematics.ColorRGB`	`m_kNormalColorPathVisited`	Color for the parts of the path that have been visited (Light Green)
`private FlyThroughRender.SetupOptions`	`m_kOptions`	Setup options.
`protected VolumeTriPlanarInterface`	`m_kParent`	Parent user-interface and display frame.
`private WildMagic.LibGraphics.SceneGraph.Node`	`m_kRotation`	Mouse rotation.
`private WildMagic.LibFoundation.Mathematics.ColorRGB`	`m_kSelectColorPathUnvisited`	Color for selecting previously-unvisited parts of the path at a branch (Dark Red)
`private WildMagic.LibFoundation.Mathematics.ColorRGB`	`m_kSelectColorPathVisited`	Color for selecting previously-visited parts of the path at a branch (Red)
`private Skeleton3D`	`m_kSkeleton`	3D Skeleton of the ModelImage.
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`m_kSurface`	The surface to fly through.
`private ModelImage3DLayout`	`m_kVolumeLayout`	3D Layout of the ModelImage.
`private boolean`	`pressed`	If any of the mouse move button pressed.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
hyperstack, hyperstackColormap, isSpaceNavCodeRunning, m_akLights, m_bDispose, m_bDoClip, m_bExtract, m_bFirstDrag, m_bInit, m_bModified, m_bMouseDrag, m_bPickPending, m_bShared, m_bSnapshot, m_bStandAlone, m_bSurfaceMaskUpdate, m_bSurfaceUpdate, m_bTestFrameRate, m_bVisible, m_fMax, m_fX, m_fY, m_fZ, m_iCaptureFPS, m_iScreenCaptureCounter, m_iXPick, m_iYPick, m_kAnimator, m_kCuller, m_kDeleteList, m_kDisplayList, m_kPicker, m_kSceneToWorld, m_kTranslate, m_kVolumeImageA, m_kVolumeImageA_New, m_kVolumeImageA_Old, m_kVolumeImageB, m_kVolumeImageB_New, m_kVolumeImageB_Old, m_kWinLevel, m_kXRotate, m_kYRotate, m_kZRotate, m_spkCull, m_spkScene, nearPlane, updateBoundingCube

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors
Constructor	Description
`FlyThroughRender(com.jogamp.opengl.awt.GLCanvas kCanvas, VolumeTriPlanarInterface kParent, com.jogamp.opengl.util.Animator kAnimator, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB, WildMagic.LibFoundation.Mathematics.Vector3f kTranslate)`	Construct the FlyThroughRenderer.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addSurface(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface, WildMagic.LibFoundation.Mathematics.Vector3f kCenter)`	Add the fly-through surface.
`void`	`autoRun()`	Causes the FlyPathBehavior to fly down the current path from start to finish and back again.
`private void`	`createAnnotatePoint(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)`	Create a new Annotation point at the position specified.
`private WildMagic.LibGraphics.SceneGraph.Polyline`	`createBranchConnectGeometryScaled(int iBranch)`	Get the geometry to be used for rendering the connection of the specified branch to its parent branch.
`private WildMagic.LibGraphics.SceneGraph.Polyline`	`createBranchPathGeometryScaled(int iBranch)`	Get the geometry to be used for rendering the path of the specified branch.
`private void`	`CreateScene()`	Called by the init() function.
`void`	`display(com.jogamp.opengl.GLAutoDrawable arg0)`
`void`	`doPseudoColor(boolean bOn)`	Turn curvature-based color map on/off.
`java.lang.Object`	`getBranchState()`
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getCameraDirection()`	Return the camera direction vector.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getCameraUp()`	Return the camera up vector.
`java.awt.Canvas`	`getCanvas()`
`int`	`getHeight()`
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getPositionScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)`	Scaled coordinates for the current position along the path for viewing.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getPositionUnScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)`	Scaled coordinates for the current position along the path for viewing.
`int`	`getWidth()`
`void`	`init(com.jogamp.opengl.GLAutoDrawable arg0)`
`void`	`keyPressed(java.awt.event.KeyEvent e)`	Part of the KeyListener interface.
`static FlyThroughRender`	`main(com.jogamp.opengl.awt.GLCanvas kCanvas, VolumeTriPlanarInterface kParent, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB, WildMagic.LibFoundation.Mathematics.Vector3f kTranslate, boolean displayInSeparateFrame)`
`void`	`makeMove(java.lang.String cmd)`	Passes move command from the JPanelFlythruMove to the FlyPathBehavior class.
`void`	`mouseDragged(java.awt.event.MouseEvent event)`
`void`	`mousePressed(java.awt.event.MouseEvent e)`
`void`	`mouseReleased(java.awt.event.MouseEvent e)`
`void`	`mouseWheelMoved(java.awt.event.MouseWheelEvent event)`	Mouse wheel event invoked from the middle mouse button roller.
`protected void`	`Move()`	Updates the camera and displayed objects for rendering.
`protected void`	`Pick()`	Picking support for adding Annotation points to the scene.
`private void`	`Render()`	Render the scene-graph.
`protected void`	`resetRenderBranchConnect()`	Called any time a change has been made to a new branch so that the connection between the branch and its parent can be rendered.
`protected void`	`resetRenderBranchPath()`	Called any time the position along the current curve changes and the color of the curve needs to change to show what has been visited.
`private ModelImage`	`resizeImage(ModelImage kInput)`
`void`	`setCurrentState(java.lang.Object _state)`	Set the BranchState in the FlyPathBehavior.
`void`	`setupRender(ModelImage kImage, FlyThroughRender.SetupOptions kOptions)`	Setup flythru renderer.
`void`	`setupRenderControl(JPanelVirtualEndoscopySetup_WM _control)`	Set the JPanelVirtualEndoscopySetup user-interface.
`void`	`update()`	Update the representation of the current viewpoint in the Volume Tri-Planar renderer.
`private void`	`updateCamera()`	Update the camera location and view direction.
`void`	`updateLighting(WildMagic.LibGraphics.Rendering.Light[] akGLights)`	Called from JPanelLight.
`void`	`viewChanged(FlyPathBehavior_WM behavior, int iEvent)`	ViewChanged callback for flythrough renderers.

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
AddNode, checkIfSpaceNavNeedsCalibration, dispose, dispose, drawText, fineMovement, GetCanvas, getCounter, getDisplayList, getImage, GetLights, getNearPlane, GetNode, getNormalizedXDim, getNormalizedYDim, getNormalizedZDim, getRotationCutoffValue, getRotationScaleFactor, GetSceneRotation, getSceneToWorldMatrix, getTranslate, getTranslationCutoffValue, getTranslationScaleFactor, getVolumeImage, getVolumeImageB, invertRX, invertRY, invertRZ, invertTX, invertTY, invertTZ, isUseMouseRotationCutoffs, isUseMouseTranslationCutoffs, isVisible, normalMovement, pauseAnimator, processSpaceNavEvent, processSpaceNavEvent, record, reInitialize, RemoveNode, RenderFrameRate, resetAxis, resetAxisX, resetAxisXInv, resetAxisY, reshape, saveAVIMovie, saveQuickTimeMovie, setCameraNearPlane, setDefaultLighting, setOrthographicProjection, setPerspectiveProjection, setRotationCutoffValue, setRotationScaleFactor, SetSceneRotation, setTranslationCutoffValue, setTranslationScaleFactor, setUseMouseRotationCutoffs, setUseMouseTranslationCutoffs, setVisible, startAnimator, updateImageFromRotation, UpdateSceneRotation, writeImage

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyReleased, keyTyped, LookDown, LookUp, MeasureTime, mouseClicked, mouseEntered, mouseExited, mouseMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application
reloadShaders, TestStreaming

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface
getCounter, getImage, record, writeImage

Methods inherited from interface com.jogamp.opengl.GLEventListener
dispose, reshape

Methods inherited from interface java.awt.event.KeyListener
keyReleased, keyTyped

Methods inherited from interface java.awt.event.MouseListener
mouseClicked, mouseEntered, mouseExited

Methods inherited from interface java.awt.event.MouseMotionListener
mouseMoved

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - m_kParent
```
protected VolumeTriPlanarInterface m_kParent
```
    Parent user-interface and display frame.
  - m_kVolumeLayout
```
private ModelImage3DLayout m_kVolumeLayout
```
    3D Layout of the ModelImage.
  - m_kSkeleton
```
private Skeleton3D m_kSkeleton
```
    3D Skeleton of the ModelImage.
  - m_kFlyPathGraphCurve
```
private FlyPathGraphCurve m_kFlyPathGraphCurve
```
    Fly path curve.
  - m_kFlyPathBehavior
```
private FlyPathBehavior_WM m_kFlyPathBehavior
```
    Fly path behavior.
  - m_kAnnotateList
```
private FlyPathAnnotateList_WM m_kAnnotateList
```
    Annotations along the fly path.
  - m_kMaskImage
```
private ModelImage m_kMaskImage
```
    ModelImage used to generate the fly path.
  - m_iLastSelectedBranchIndex
```
private int m_iLastSelectedBranchIndex
```
    Keep track of the last branch that was selected (at a branch point).
  - m_aiBranchIndexUnvisitedMax
```
private int[] m_aiBranchIndexUnvisitedMax
```
    This is the range of path samples for each branch that are unvisited.
  - m_kNormalColorPathVisited
```
private WildMagic.LibFoundation.Mathematics.ColorRGB m_kNormalColorPathVisited
```
    Color for the parts of the path that have been visited (Light Green)
  - m_kNormalColorPathUnvisited
```
private WildMagic.LibFoundation.Mathematics.ColorRGB m_kNormalColorPathUnvisited
```
    Color for the parts of the path that have not yet been visited (Dark Green)
  - m_kSelectColorPathVisited
```
private WildMagic.LibFoundation.Mathematics.ColorRGB m_kSelectColorPathVisited
```
    Color for selecting previously-visited parts of the path at a branch (Red)
  - m_kSelectColorPathUnvisited
```
private WildMagic.LibFoundation.Mathematics.ColorRGB m_kSelectColorPathUnvisited
```
    Color for selecting previously-unvisited parts of the path at a branch (Dark Red)
  - m_aiBranchIndexUnvisitedMin
```
private int[] m_aiBranchIndexUnvisitedMin
```
    This is the range of path samples for each branch that are unvisited.
  - m_kSurface
```
private WildMagic.LibGraphics.SceneGraph.TriMesh m_kSurface
```
    The surface to fly through.
  - m_kLight
```
private WildMagic.LibGraphics.Rendering.Light m_kLight
```
    Lighting in the scene.
  - m_kOptions
```
private FlyThroughRender.SetupOptions m_kOptions
```
    Setup options.
  - m_kControlFrame
```
private JPanelVirtualEndoscopySetup_WM m_kControlFrame
```
    This is the control frame which may need to be updated as the view changes.
  - m_kRotation
```
private WildMagic.LibGraphics.SceneGraph.Node m_kRotation
```
    Mouse rotation.
  - m_kCortical
```
private MjCorticalMesh_WM m_kCortical
```
    Calculating the mesh curvatures.
  - m_kCenter
```
private WildMagic.LibFoundation.Mathematics.Vector3f m_kCenter
```
    Center of Mesh
  - m_kMeanCurvaturesLUT
```
private ModelLUT m_kMeanCurvaturesLUT
```
    kMean curvature LUT. Pseudo color look up table.
  - m_kLightShader
```
private SurfaceLightingEffect m_kLightShader
```
    Lighting effect.
  - m_akColorBackup
```
private WildMagic.LibFoundation.Mathematics.ColorRGB[] m_akColorBackup
```
    Original surface color for undoing the pseudo-color curvature map.
  - pressed
```
private volatile boolean pressed
```
    If any of the mouse move button pressed.
  - lookup
```
public static int lookup
```
  - lookdown
```
public static int lookdown
```
  - lookright
```
public static int lookright
```
  - lookleft
```
public static int lookleft
```
- Constructor Detail
  - FlyThroughRender
```
public FlyThroughRender(com.jogamp.opengl.awt.GLCanvas kCanvas,
                        VolumeTriPlanarInterface kParent,
                        com.jogamp.opengl.util.Animator kAnimator,
                        VolumeImage kVolumeImageA,
                        VolumeImage kVolumeImageB,
                        WildMagic.LibFoundation.Mathematics.Vector3f kTranslate)
```
    Construct the FlyThroughRenderer.
    
    Parameters:
    
    kParent - parent user-interface and frame.
    
    kAnimator - animator used to display the canvas.
    
    kVolumeImageA - volume data and textures for ModelImage A.
    
    kVolumeImageB - volume data and textures for ModelImage B.
- Method Detail
  - main
```
public static FlyThroughRender main(com.jogamp.opengl.awt.GLCanvas kCanvas,
                                    VolumeTriPlanarInterface kParent,
                                    VolumeImage kVolumeImageA,
                                    VolumeImage kVolumeImageB,
                                    WildMagic.LibFoundation.Mathematics.Vector3f kTranslate,
                                    boolean displayInSeparateFrame)
```
  - addSurface
```
public void addSurface(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface,
                       WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
```
    Add the fly-through surface.
    
    Parameters:
    
    kSurface - the TriMesh surface to fly through.
  - autoRun
```
public void autoRun()
```
    Description copied from interface: FlyThroughRenderInterface
    
    Causes the FlyPathBehavior to fly down the current path from start to finish and back again.
    
    Specified by:
    
    autoRun in interface FlyThroughRenderInterface
  - display
```
public void display(com.jogamp.opengl.GLAutoDrawable arg0)
```
    Specified by:
    
    display in interface com.jogamp.opengl.GLEventListener
  - doPseudoColor
```
public void doPseudoColor(boolean bOn)
```
    Turn curvature-based color map on/off.
    
    Parameters:
    
    bOn - turns curvature-based color map on when true and off when false.
  - getBranchState
```
public java.lang.Object getBranchState()
```
    Specified by:
    
    getBranchState in interface FlyThroughRenderInterface
    
    Returns:
    
    the current BranchState from the FlyPatheBehavior class.
  - getCameraDirection
```
public WildMagic.LibFoundation.Mathematics.Vector3f getCameraDirection()
```
    Return the camera direction vector.
    
    Returns:
    
    camera direction vector.
  - getCameraUp
```
public WildMagic.LibFoundation.Mathematics.Vector3f getCameraUp()
```
    Return the camera up vector.
    
    Returns:
    
    camera up vector.
  - getCanvas
```
public java.awt.Canvas getCanvas()
```
    Specified by:
    
    getCanvas in interface FlyThroughRenderInterface
    
    Returns:
    
    the Canvas from the Fly-through renderer.
  - getHeight
```
public int getHeight()
```
    Specified by:
    
    getHeight in interface FlyThroughRenderInterface
    
    Returns:
    
    the frame height.
  - getPositionScaled
```
public WildMagic.LibFoundation.Mathematics.Vector3f getPositionScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)
```
    Scaled coordinates for the current position along the path for viewing.
    
    Parameters:
    
    Point - in normalized path coordinates.
    
    Returns:
    
    Point3f A new instance created which contains the path position coordinates, scaled to match the TriMesh in JPanelSurface.
  - getPositionUnScaled
```
public WildMagic.LibFoundation.Mathematics.Vector3f getPositionUnScaled(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)
```
    Scaled coordinates for the current position along the path for viewing.
    
    Parameters:
    
    The - path position coordinates, scaled to match the TriMesh.
    
    Returns:
    
    Point in normalized path coordinates.
  - getWidth
```
public int getWidth()
```
    Specified by:
    
    getWidth in interface FlyThroughRenderInterface
    
    Returns:
    
    the frame width.
  - init
```
public void init(com.jogamp.opengl.GLAutoDrawable arg0)
```
    Specified by:
    
    init in interface com.jogamp.opengl.GLEventListener
  - keyPressed
```
public void keyPressed(java.awt.event.KeyEvent e)
```
    Description copied from class: GPURenderBase
    
    Part of the KeyListener interface.
    
    Specified by:
    
    keyPressed in interface java.awt.event.KeyListener
    
    Overrides:
    
    keyPressed in class GPURenderBase
    
    Parameters:
    
    e - the key event.
  - makeMove
```
public void makeMove(java.lang.String cmd)
```
    Description copied from interface: FlyThroughRenderInterface
    
    Passes move command from the JPanelFlythruMove to the FlyPathBehavior class.
    
    Specified by:
    
    makeMove in interface FlyThroughRenderInterface
    
    Parameters:
    
    cmd - move command.
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent event)
```
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseDragged in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Overrides:
    
    mousePressed in class GPURenderBase
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseReleased in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
  - mouseWheelMoved
```
public void mouseWheelMoved(java.awt.event.MouseWheelEvent event)
```
    Mouse wheel event invoked from the middle mouse button roller. Rolling forward to track the fly-thru path in forward direction. Rolling backward to track the fly-thru path in backward direction.
    
    Specified by:
    
    mouseWheelMoved in interface java.awt.event.MouseWheelListener
    
    Overrides:
    
    mouseWheelMoved in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    
    Parameters:
    
    event - mouse middle mouse roller event.
  - setCurrentState
```
public void setCurrentState(java.lang.Object _state)
```
    Description copied from interface: FlyThroughRenderInterface
    
    Set the BranchState in the FlyPathBehavior.
    
    Specified by:
    
    setCurrentState in interface FlyThroughRenderInterface
  - setupRender
```
public void setupRender(ModelImage kImage,
                        FlyThroughRender.SetupOptions kOptions)
```
    Setup flythru renderer.
    
    Parameters:
    
    _kImage - original model image reference.
    
    kOptions - setup options reference.
  - setupRenderControl
```
public void setupRenderControl(JPanelVirtualEndoscopySetup_WM _control)
```
    Set the JPanelVirtualEndoscopySetup user-interface.
    
    Parameters:
    
    _control - the JPanelVirtualEndoscopySetup user-interface.
  - update
```
public void update()
```
    Update the representation of the current viewpoint in the Volume Tri-Planar renderer.
  - updateLighting
```
public void updateLighting(WildMagic.LibGraphics.Rendering.Light[] akGLights)
```
    Description copied from class: GPURenderBase
    
    Called from JPanelLight. Updates the lighting parameters.
    
    Overrides:
    
    updateLighting in class GPURenderBase
    
    Parameters:
    
    akGLights - the set of GeneralLight objects.
  - viewChanged
```
public void viewChanged(FlyPathBehavior_WM behavior,
                        int iEvent)
```
    Description copied from interface: FlyPathBehavior_WM.Callback
    
    ViewChanged callback for flythrough renderers.
    
    Specified by:
    
    viewChanged in interface FlyPathBehavior_WM.Callback
    
    Parameters:
    
    behavior - reference to this MjFlyPathBehavior in which the view changed.
    
    iEvent - Bitmask identifies the event(s) which caused the view to change. Bitmask created from OR of EVENT_* defintions.
  - createAnnotatePoint
```
private void createAnnotatePoint(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)
```
    Create a new Annotation point at the position specified.
    
    Parameters:
    
    kPosition - position of new annotation point.
  - createBranchConnectGeometryScaled
```
private WildMagic.LibGraphics.SceneGraph.Polyline createBranchConnectGeometryScaled(int iBranch)
```
    Get the geometry to be used for rendering the connection of the specified branch to its parent branch.
    
    Parameters:
    
    iBranch - Index which identifies the branch.
    
    Returns:
    
    Polyline instance that can be attached to a scene-graph Node for rendering
  - createBranchPathGeometryScaled
```
private WildMagic.LibGraphics.SceneGraph.Polyline createBranchPathGeometryScaled(int iBranch)
```
    Get the geometry to be used for rendering the path of the specified branch.
    
    Parameters:
    
    iBranch - Index which identifies the branch.
    
    Returns:
    
    Polyline instance that can be attached to a scene-graph Node for rendering
    The coordinates are scaled to match the TriMesh in JPanelSurface.
  - CreateScene
```
private void CreateScene()
```
    Called by the init() function. Creates and initialized the scene-graph.
    
    Parameters:
    
    arg0 - the GLCanvas
  - Render
```
private void Render()
```
    Render the scene-graph.
  - resizeImage
```
private ModelImage resizeImage(ModelImage kInput)
```
  - updateCamera
```
private void updateCamera()
```
    Update the camera location and view direction. Called from mouse dragged. Implements "inside looking out" object rotation.
  - Move
```
protected void Move()
```
    Description copied from class: GPURenderBase
    
    Updates the camera and displayed objects for rendering.
    
    Overrides:
    
    Move in class GPURenderBase
  - Pick
```
protected void Pick()
```
    Picking support for adding Annotation points to the scene.
  - resetRenderBranchConnect
```
protected void resetRenderBranchConnect()
```
    Called any time a change has been made to a new branch so that the connection between the branch and its parent can be rendered.
  - resetRenderBranchPath
```
protected void resetRenderBranchPath()
```
    Called any time the position along the current curve changes and the color of the curve needs to change to show what has been visited.

Class FlyThroughRender

Nested Class Summary

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.renderer.flythroughview.FlyThroughRenderInterface

Methods inherited from interface com.jogamp.opengl.GLEventListener

Methods inherited from interface java.awt.event.KeyListener

Methods inherited from interface java.awt.event.MouseListener

Methods inherited from interface java.awt.event.MouseMotionListener

Field Detail

serialVersionUID

m_kParent

m_kVolumeLayout

m_kSkeleton

m_kFlyPathGraphCurve

m_kFlyPathBehavior

m_kAnnotateList

m_kMaskImage

m_iLastSelectedBranchIndex

m_aiBranchIndexUnvisitedMax

m_kNormalColorPathVisited

m_kNormalColorPathUnvisited

m_kSelectColorPathVisited

m_kSelectColorPathUnvisited

m_aiBranchIndexUnvisitedMin

m_kSurface

m_kLight

m_kOptions

m_kControlFrame

m_kRotation

m_kCortical

m_kCenter

m_kMeanCurvaturesLUT

m_kLightShader

m_akColorBackup

pressed

lookup

lookdown

lookright

lookleft

Constructor Detail

FlyThroughRender

Method Detail

main

addSurface

autoRun

display

doPseudoColor

getBranchState

getCameraDirection

getCameraUp

getCanvas

getHeight

getPositionScaled

getPositionUnScaled

getWidth

init

keyPressed

makeMove

mouseDragged

mousePressed

mouseReleased

mouseWheelMoved

setCurrentState

setupRender

setupRenderControl

update

updateLighting

viewChanged

createAnnotatePoint

createBranchConnectGeometryScaled