java.lang.Object
- gov.nih.mipav.view.renderer.WildMagic.AAM.CVisDMatrix

Direct Known Subclasses:

CDMatrix
```
public class CVisDMatrix
extends java.lang.Object
```
* AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education. Please see the full disclaimer below. All publications describing work using this software should cite the reference given below. Copyright (c) 2000-2003 Mikkel B. Stegmann, mbs@imm.dtu.dk IMM, Informatics & Mathematical Modelling DTU, Technical University of Denmark Richard Petersens Plads, Building 321 DK-2800 Lyngby, Denmark http://www.imm.dtu.dk/~aam/ REFERENCES Please use the reference below, when writing articles, reports etc. where the AAM-API has been used. A draft version the article is available from the homepage. I will be happy to receive pre- or reprints of such articles. /Mikkel ------------- M. B. Stegmann, B. K. Ersboll, R. Larsen, "FAME -- A Flexible Appearance Modelling Environment", IEEE Transactions on Medical Imaging, IEEE, 2003 (to appear) ------------- 3RD PART SOFTWARE The software is partly based on the following libraries: - The Microsoft(tm) Vision Software Developers Kit, VisSDK - LAPACK DISCLAIMER This software is provided 'as-is', without any express or implied warranty. In no event will the author be held liable for any damages arising from the use of this software. Permission is granted to anyone to use this software for any non-commercial purpose, and to alter it, subject to the following restrictions: 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution. -- No guarantees of performance accompany this software, nor is any responsibility assumed on the part of the author or IMM. This software is provided by Mikkel B. Stegmann and IMM ``as is'' and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall IMM or Mikkel B. Stegmann be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of this software, even if advised of the possibility of such damage. $Revision: 1.4 $ $Date: 2003/04/23 14:49:15 $ NAME // VisDMatrix.h -- double precision matrix/vector operations DESCRIPTION CLASS: CVisDMatrix The CVisDMatrix class provides some basic matrix operations, using calls to external software (IMSL for the moment) to perform the more complicated operations. To take advantage of the IMSL numerical analysis routines, define VIS_USE_IMSL in the Build Settings C/C++ property page. Copyright (c) 1996-2000 Microsoft Corporation, All Rights Reserved Use partial routine for matrix manipulation for automatic prostate segmentation.

Author:

Ruida Cheng

Field Summary

Fields
Modifier and Type	Field	Description
`static int`	`eftData`
`static int`	`eftDims`
`static int`	`eftEnd`
`static int`	`eftName`
`int`	`FieldType`
`double[][]`	`m_data`
`protected boolean`	`m_fExternalStorage`
`protected int`	`m_nCols`
`protected int`	`m_nRows`
`static boolean`	`s_fVerboseOutput`

Constructor Summary

Constructors
Constructor	Description
`CVisDMatrix()`
`CVisDMatrix(int rows, int cols)`
`CVisDMatrix(int rows, int cols, double[] storage)`
`CVisDMatrix(int rows, int cols, double[][] storage)`
`CVisDMatrix(CVisDMatrix refmatrix)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`CVisDMatrix`	`add(CVisDMatrix refmatrix)`
`CVisDMatrix`	`add_into(CVisDMatrix refmatrix)`
`CVisDMatrix`	`assign(double value)`
`CVisDMatrix`	`assign(CVisDMatrix mat)`
`CVisDVector`	`Column(int c)`
`double`	`Determinant()`
`double`	`Determinant(CVisDMatrix matrixInverse)`
`int`	`Dgelss(int m, int n, double[][] AT, int nrhs, double[][] BT, double[] sVals, int[] pRank, double[][] X)`
`int`	`Dgesv(int n, double[][] AT, int nrhs, double[] BT, double[][] XT)`
`int`	`Dgesvd(int M, int N, double[][] a, char jobu, char jobv, double[][] U, double[] S, double[][] V)`
`int`	`Dgetrf(int m, double[][] a, double[] p_det)`
`void`	`dispose()`
`CVisDMatrix`	`div(double dbl)`
`CVisDMatrix`	`div_into(double dbl)`
`int`	`Dposv(int n, double[][] A, int nrhs, double[] BT, double[][] XT)`
`int`	`Dsyev(int m, double[][] a, double[] vals, double[][] vects)`
`CVisDMatrix`	`EqDiff(CVisDMatrix refmatrixA, CVisDMatrix refmatrixB)`
`CVisDMatrix`	`EqProd(CVisDMatrix refmatrixA, CVisDMatrix refmatrixB)`
`CVisDMatrix`	`EqSum(CVisDMatrix refmatrixA, CVisDMatrix refmatrixB)`
`boolean`	`equals(CVisDMatrix refmatrix)`
`void`	`FreeBuffer()`
`CVisDMatrix`	`Invert()`
`CVisDMatrix`	`Inverted()`
`boolean`	`IsSymmetric()`
`boolean`	`lessThan(CVisDMatrix refmatrix)`
`CVisDMatrix`	`mult(double dbl)`
`CVisDMatrix`	`mult(CVisDMatrix refmatrix)`
`CVisDVector`	`mult(CVisDVector refvector)`
`CVisDMatrix`	`mult_into(double dbl)`
`CVisDMatrix`	`mult_into(CVisDMatrix refmatrix)`
`int`	`NCols()`
`CVisDMatrix`	`neg()`
`boolean`	`not_equals(CVisDMatrix refmatrix)`
`int`	`NRows()`
`void`	`Resize(int rows, int cols)`
`void`	`Resize(int rows, int cols, double[][] storage)`
`CVisDVector`	`Row(int r)`
`void`	`SetColumn(int c, CVisDVector v)`
`void`	`SetRow(int r, CVisDVector v)`
`void`	`SetSize(int rows, int cols)`
`void`	`SetSize(int rows, int cols, double[][] storage)`
`CVisDMatrix`	`sub(CVisDMatrix refmatrix)`
`CVisDMatrix`	`sub_into(CVisDMatrix refmatrix)`
`CVisDMatrix`	`Submatrix(int newRows, int newCols, int i0, int j0)`
`CVisDMatrix`	`Submatrix(int newRows, int newCols, CVisDMatrix submat)`
`CVisDMatrix`	`Submatrix(int newRows, int newCols, CVisDMatrix submat, int i0, int j0)`
`CVisDMatrix`	`Transpose()`
`CVisDMatrix`	`Transposed()`
`CVisDVector`	`VisCrossProduct(CVisDVector v1, CVisDVector v2)`
`void`	`VisCrossProduct(CVisDVector x, CVisDVector y, CVisDVector z)`
`CVisDMatrix`	`VisDMatrixLeastSquares(CVisDMatrix A, CVisDMatrix B)`
`void`	`VisDMatrixLeastSquares(CVisDMatrix A, CVisDMatrix B, CVisDMatrix X)`
`CVisDVector`	`VisDMatrixLeastSquares(CVisDMatrix A, CVisDVector b)`
`void`	`VisDMatrixLeastSquares(CVisDMatrix A, CVisDVector b, CVisDVector x)`
`int`	`VisDMatrixLLS(CVisDMatrix A, CVisDMatrix B, CVisDMatrix X)`
`CVisDVector`	`VisDMatrixSolve(CVisDMatrix A, CVisDVector b)`
`void`	`VisDMatrixSolve(CVisDMatrix A, CVisDVector b, CVisDVector x)`
`CVisDVector`	`VisDMatrixSolveSPD(CVisDMatrix A, CVisDVector b)`
`void`	`VisDMatrixSolveSPD(CVisDMatrix A, CVisDVector b, CVisDVector x, int n)`
`CVisDMatrix`	`VisDMatrixSqrtInverse(CVisDMatrix A)`
`void`	`VisDMatrixSqrtInverse(CVisDMatrix A, CVisDMatrix AsqrtInv)`
`void`	`VisDMatrixSVD(CVisDMatrix A, CVisDVector s, CVisDMatrix U, CVisDMatrix V)`
`void`	`VisDMatrixSVD(CVisDMatrix A, CVisDVector s, CVisDMatrix U, CVisDMatrix V, int compute_left, int compute_right)`
`boolean`	`VisDMatrixSymmetricEigen(CVisDMatrix A, CVisDVector vals, CVisDMatrix vects)`
`void`	`VisGaussJordanSolveDMatrix(CVisDMatrix A)`
`CVisDMatrix`	`VisOuterProduct(CVisDVector v1, CVisDVector v2)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

m_nRows
```
protected int m_nRows
```

m_nCols
```
protected int m_nCols
```

m_data
```
public double[][] m_data
```

m_fExternalStorage
```
protected boolean m_fExternalStorage
```

FieldType
```
public int FieldType
```

eftName
```
public static int eftName
```

eftDims
```
public static int eftDims
```

eftData
```
public static int eftData
```

eftEnd
```
public static int eftEnd
```

s_fVerboseOutput
```
public static boolean s_fVerboseOutput
```

Constructor Detail

CVisDMatrix
```
public CVisDMatrix()
```

CVisDMatrix

public CVisDMatrix(int rows,
                   int cols)

CVisDMatrix

public CVisDMatrix(int rows,
                   int cols,
                   double[] storage)

CVisDMatrix

public CVisDMatrix(int rows,
                   int cols,
                   double[][] storage)

CVisDMatrix

public CVisDMatrix(CVisDMatrix refmatrix)

Method Detail

dispose
```
public void dispose()
```

not_equals

public boolean not_equals(CVisDMatrix refmatrix)

add

public CVisDMatrix add(CVisDMatrix refmatrix)

sub

public CVisDMatrix sub(CVisDMatrix refmatrix)

mult

public CVisDVector mult(CVisDVector refvector)

mult

public CVisDMatrix mult(CVisDMatrix refmatrix)

mult

public CVisDMatrix mult(double dbl)

div

public CVisDMatrix div(double dbl)

Transpose
```
public CVisDMatrix Transpose()
```

Submatrix

public CVisDMatrix Submatrix(int newRows,
                             int newCols,
                             CVisDMatrix submat)

Submatrix

public CVisDMatrix Submatrix(int newRows,
                             int newCols,
                             int i0,
                             int j0)

VisCrossProduct

public CVisDVector VisCrossProduct(CVisDVector v1,
                                   CVisDVector v2)

NRows
```
public int NRows()
```

NCols
```
public int NCols()
```

FreeBuffer
```
public void FreeBuffer()
```

SetSize

public void SetSize(int rows,
                    int cols)

SetSize

public void SetSize(int rows,
                    int cols,
                    double[][] storage)

Resize

public void Resize(int rows,
                   int cols)

Resize

public void Resize(int rows,
                   int cols,
                   double[][] storage)

assign

public CVisDMatrix assign(CVisDMatrix mat)

assign

public CVisDMatrix assign(double value)

equals

public boolean equals(CVisDMatrix refmatrix)

lessThan

public boolean lessThan(CVisDMatrix refmatrix)

add_into

public CVisDMatrix add_into(CVisDMatrix refmatrix)

sub_into

public CVisDMatrix sub_into(CVisDMatrix refmatrix)

mult_into

public CVisDMatrix mult_into(CVisDMatrix refmatrix)

mult_into

public CVisDMatrix mult_into(double dbl)

div_into

public CVisDMatrix div_into(double dbl)

neg
```
public CVisDMatrix neg()
```

EqSum

public CVisDMatrix EqSum(CVisDMatrix refmatrixA,
                         CVisDMatrix refmatrixB)

EqDiff

public CVisDMatrix EqDiff(CVisDMatrix refmatrixA,
                          CVisDMatrix refmatrixB)

EqProd

public CVisDMatrix EqProd(CVisDMatrix refmatrixA,
                          CVisDMatrix refmatrixB)

Dgetrf

public int Dgetrf(int m,
                  double[][] a,
                  double[] p_det)

Invert
```
public CVisDMatrix Invert()
```

Inverted
```
public CVisDMatrix Inverted()
```

Determinant
```
public double Determinant()
```

Determinant

public double Determinant(CVisDMatrix matrixInverse)

Transposed
```
public CVisDMatrix Transposed()
```

IsSymmetric
```
public boolean IsSymmetric()
```

VisGaussJordanSolveDMatrix

public void VisGaussJordanSolveDMatrix(CVisDMatrix A)

VisDMatrixSqrtInverse

public CVisDMatrix VisDMatrixSqrtInverse(CVisDMatrix A)

VisDMatrixSqrtInverse

public void VisDMatrixSqrtInverse(CVisDMatrix A,
                                  CVisDMatrix AsqrtInv)

VisDMatrixSymmetricEigen

public boolean VisDMatrixSymmetricEigen(CVisDMatrix A,
                                        CVisDVector vals,
                                        CVisDMatrix vects)

Dsyev

public int Dsyev(int m,
                 double[][] a,
                 double[] vals,
                 double[][] vects)

Submatrix

public CVisDMatrix Submatrix(int newRows,
                             int newCols,
                             CVisDMatrix submat,
                             int i0,
                             int j0)

Row
```
public CVisDVector Row(int r)
```

Column
```
public CVisDVector Column(int c)
```

SetRow

public void SetRow(int r,
                   CVisDVector v)

SetColumn

public void SetColumn(int c,
                      CVisDVector v)

VisOuterProduct

public CVisDMatrix VisOuterProduct(CVisDVector v1,
                                   CVisDVector v2)

VisCrossProduct

public void VisCrossProduct(CVisDVector x,
                            CVisDVector y,
                            CVisDVector z)

VisDMatrixLeastSquares

public CVisDMatrix VisDMatrixLeastSquares(CVisDMatrix A,
                                          CVisDMatrix B)

VisDMatrixLeastSquares

public CVisDVector VisDMatrixLeastSquares(CVisDMatrix A,
                                          CVisDVector b)

VisDMatrixLeastSquares

public void VisDMatrixLeastSquares(CVisDMatrix A,
                                   CVisDVector b,
                                   CVisDVector x)

VisDMatrixLeastSquares

public void VisDMatrixLeastSquares(CVisDMatrix A,
                                   CVisDMatrix B,
                                   CVisDMatrix X)

VisDMatrixLLS

public int VisDMatrixLLS(CVisDMatrix A,
                         CVisDMatrix B,
                         CVisDMatrix X)

Dgelss

public int Dgelss(int m,
                  int n,
                  double[][] AT,
                  int nrhs,
                  double[][] BT,
                  double[] sVals,
                  int[] pRank,
                  double[][] X)

VisDMatrixSolveSPD

public CVisDVector VisDMatrixSolveSPD(CVisDMatrix A,
                                      CVisDVector b)

VisDMatrixSolveSPD

public void VisDMatrixSolveSPD(CVisDMatrix A,
                               CVisDVector b,
                               CVisDVector x,
                               int n)

Dposv

public int Dposv(int n,
                 double[][] A,
                 int nrhs,
                 double[] BT,
                 double[][] XT)

VisDMatrixSolve

public CVisDVector VisDMatrixSolve(CVisDMatrix A,
                                   CVisDVector b)

VisDMatrixSolve

public void VisDMatrixSolve(CVisDMatrix A,
                            CVisDVector b,
                            CVisDVector x)

Dgesv

public int Dgesv(int n,
                 double[][] AT,
                 int nrhs,
                 double[] BT,
                 double[][] XT)

Dgesvd

public int Dgesvd(int M,
                  int N,
                  double[][] a,
                  char jobu,
                  char jobv,
                  double[][] U,
                  double[] S,
                  double[][] V)

VisDMatrixSVD

public void VisDMatrixSVD(CVisDMatrix A,
                          CVisDVector s,
                          CVisDMatrix U,
                          CVisDMatrix V)

VisDMatrixSVD

public void VisDMatrixSVD(CVisDMatrix A,
                          CVisDVector s,
                          CVisDMatrix U,
                          CVisDMatrix V,
                          int compute_left,
                          int compute_right)

Class CVisDMatrix

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

m_nRows

m_nCols

m_data

m_fExternalStorage

FieldType

eftName

eftDims

eftData

eftEnd

s_fVerboseOutput

Constructor Detail

CVisDMatrix

CVisDMatrix

CVisDMatrix

CVisDMatrix

CVisDMatrix

Method Detail

dispose

not_equals

add

sub

mult

mult

mult

div

Transpose

Submatrix

Submatrix

VisCrossProduct

NRows

NCols

FreeBuffer

SetSize

SetSize

Resize

Resize

assign

assign

equals

lessThan

add_into

sub_into

mult_into

mult_into

div_into

neg

EqSum

EqDiff

EqProd

Dgetrf

Invert

Inverted

Determinant

Determinant

Transposed

IsSymmetric

VisGaussJordanSolveDMatrix

VisDMatrixSqrtInverse

VisDMatrixSqrtInverse

VisDMatrixSymmetricEigen

Dsyev

Submatrix

Row

Column

SetRow

SetColumn

VisOuterProduct

VisCrossProduct

VisDMatrixLeastSquares

VisDMatrixLeastSquares

VisDMatrixLeastSquares

VisDMatrixLeastSquares

VisDMatrixLLS

Dgelss