Package gov.nih.mipav.view.dialogs

Class JDialogFastMarching

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogScriptableBase

gov.nih.mipav.view.dialogs.JDialogFastMarching

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class JDialogFastMarching
extends JDialogScriptableBase
implements ActionDiscovery, AlgorithmInterface

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private ModelImage	image	Source Image
private JCheckBox	image25DCheckbox	Process each slice independently, or as a 3D image.
private boolean	m_bImage25D
private float	m_fAdvectionWeight
private float	m_fCurvatureWeight
private float	m_fGMScale
private float	m_fLaplacianWeight
private float	m_fMaxDistance
private float	m_fPropagationWeight
private float	m_fSAlpha
private float	m_fSBeta
private float	m_fSMax
private float	m_fSMin
private int	m_iCoarseMax
private int	m_iEvolveMax
private int	m_iFilterType
private int	m_iIters
private static final long	serialVersionUID
private JTextField	textAdvectionWeight	Advection weight parameter
private JTextField	textCoarseMax	Max coarse iterations.
private JTextField	textCurvatureWeight	Curvature weight parameter
private JTextField	textGMScale	Gradient Magnitude Scale factor
private JTextField	textIters	Number of Iterations
private JTextField	textLaplacianWeight	Laplacian weight parameter
private JTextField	textMaxDistance	Max Distance parameter
private JTextField	textMaxEvolution	Maximum Evolution steps
private JTextField	textPropagationWeight	Propagation weight parameter
private JTextField	textSigmoiBeta	Sigmoid Beta parameter
private JTextField	textSigmoidAlpha	Sigmoid Alpha parameter
private JTextField	textSigmoidMax	Sigmoid Max parameter
private JTextField	textSigmoidMin	Sigmoid Min parameter

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogFastMarching()	Empty constructor needed for dynamic instantiation (used during scripting).
JDialogFastMarching(Frame theParentFrame, ModelImage im, int iFilterType)	Creates new dialog for finding the level set.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Closes dialog box when the OK button is pressed and calls the algorithm.
void	algorithmPerformed(AlgorithmBase algorithm)	This method is required if the AlgorithmPerformed interface is implemented.
protected void	callAlgorithm()	Starts the algorithm.
ParameterTable	createInputParameters()	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in invalid reference #setGUIFromParams() ).
ParameterTable	createOutputParameters()	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
ActionMetadata	getActionMetadata()	Return meta-information about this discoverable action for categorization and labeling purposes.
String	getOutputImageName(String imageParamName)	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
private void	init()	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
boolean	isActionComplete()	Returns whether the action has successfully completed its execution.
protected void	setGUIFromParams()	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
protected void	storeParamsFromGUI()	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

doPostAlgorithmActions, getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

scriptRun

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

image25DCheckbox

private JCheckBox image25DCheckbox

Process each slice independently, or as a 3D image.

image

private ModelImage image

Source Image

textIters

private JTextField textIters

Number of Iterations

textGMScale

private JTextField textGMScale

Gradient Magnitude Scale factor

textSigmoidAlpha

private JTextField textSigmoidAlpha

Sigmoid Alpha parameter

textSigmoiBeta

private JTextField textSigmoiBeta

Sigmoid Beta parameter

textSigmoidMin

private JTextField textSigmoidMin

Sigmoid Min parameter

textSigmoidMax

private JTextField textSigmoidMax

Sigmoid Max parameter

textCoarseMax

private JTextField textCoarseMax

Max coarse iterations.

textMaxDistance

private JTextField textMaxDistance

Max Distance parameter

textAdvectionWeight

private JTextField textAdvectionWeight

Advection weight parameter

textPropagationWeight

private JTextField textPropagationWeight

Propagation weight parameter

textCurvatureWeight

private JTextField textCurvatureWeight

Curvature weight parameter

textLaplacianWeight

private JTextField textLaplacianWeight

Laplacian weight parameter

textMaxEvolution

private JTextField textMaxEvolution

Maximum Evolution steps

m_iIters

private int m_iIters

m_fGMScale

private float m_fGMScale

m_fSAlpha

private float m_fSAlpha

m_fSBeta

private float m_fSBeta

m_fSMin

private float m_fSMin

m_fSMax

private float m_fSMax

m_iCoarseMax

private int m_iCoarseMax

m_fMaxDistance

private float m_fMaxDistance

m_fAdvectionWeight

private float m_fAdvectionWeight

m_fPropagationWeight

private float m_fPropagationWeight

m_fCurvatureWeight

private float m_fCurvatureWeight

m_fLaplacianWeight

private float m_fLaplacianWeight

m_iEvolveMax

private int m_iEvolveMax

m_iFilterType

private int m_iFilterType

m_bImage25D

private boolean m_bImage25D

Constructor Details

JDialogFastMarching

public JDialogFastMarching()

Empty constructor needed for dynamic instantiation (used during scripting).

JDialogFastMarching

public JDialogFastMarching(Frame theParentFrame,
 ModelImage im,
 int iFilterType)

Creates new dialog for finding the level set.

Parameters:

theParentFrame - Parent frame

im - Source image

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Closes dialog box when the OK button is pressed and calls the algorithm.

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class JDialogBase

Parameters:

event - event that triggers function

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - Algorithm that caused the event.

init

private void init()

Sets up the GUI (panels, buttons, etc) and displays it on the screen.

getActionMetadata

public ActionMetadata getActionMetadata()

Description copied from interface: ActionDiscovery

Return meta-information about this discoverable action for categorization and labeling purposes.

Specified by:

getActionMetadata in interface ActionDiscovery

Returns:

Metadata for this action.

createInputParameters

public ParameterTable createInputParameters()

Description copied from interface: ActionDiscovery

Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in

invalid reference

#setGUIFromParams()

).

Specified by:

createInputParameters in interface ActionDiscovery

Returns:

A parameter table listing the inputs of this algorithm.

createOutputParameters

public ParameterTable createOutputParameters()

Description copied from interface: ActionDiscovery

Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).

Specified by:

createOutputParameters in interface ActionDiscovery

Returns:

A parameter table listing the outputs of this algorithm.

getOutputImageName

public String getOutputImageName(String imageParamName)

Description copied from interface: ActionDiscovery

Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).

Specified by:

getOutputImageName in interface ActionDiscovery

Parameters:

imageParamName - The output image parameter label for which to get the image name.

Returns:

The image name of the requested output image parameter label.

isActionComplete

public boolean isActionComplete()

Description copied from interface: ActionDiscovery

Returns whether the action has successfully completed its execution.

Specified by:

isActionComplete in interface ActionDiscovery

Returns:

True, if the action is complete. False, if the action failed or is still running.

callAlgorithm

protected void callAlgorithm()

Description copied from class: JDialogScriptableBase

Starts the algorithm. Already exists in most algorithm dialogs. Should be called during scripted execution and regular operation.

Specified by:

callAlgorithm in class JDialogScriptableBase

setGUIFromParams

protected void setGUIFromParams()

Description copied from class: JDialogScriptableBase

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

Specified by:

setGUIFromParams in class JDialogScriptableBase

storeParamsFromGUI

protected void storeParamsFromGUI()
                           throws ParserException

Description copied from class: JDialogScriptableBase

Record the parameters just used to run this algorithm in a script.

Specified by:

storeParamsFromGUI in class JDialogScriptableBase

Throws:

ParserException - If there is a problem creating/recording the new parameters.