Package gov.nih.mipav.view.dialogs

Class JDialogRegistrationValidation

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogScriptableBase

gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

gov.nih.mipav.view.dialogs.JDialogRegistrationValidation

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class JDialogRegistrationValidation
extends JDialogRegistrationLeastSquares
implements AlgorithmInterface

Dialog to get user input, then call algorithmRegValidation. Selects image is match image, the image that gets transformed until it is registered to the base image. Algorithms are executed in their own thread.

Author:

senseneyj

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private AlgorithmOptimizeFunctionBase	algoCost	Algorithm that implement cost functions, either a AlgorithmCostFunctions or AlgorithmCostFunctions2D
private int	bin1	Bin to use for pixel comparisons
private String	currentCostFunct	Description of the cost function being performed
private JCheckBox	doCorrelationRatioSmoothed	Whether the available cost functions should be performed
private JCheckBox	doMutualInfoSmoothed	Whether the available cost functions should be performed
private JCheckBox	doNormMutualInfoSmoothed	Whether the available cost functions should be performed
private JCheckBox	doNormXCorr	Whether the available cost functions should be performed
private ModelSimpleImage	simpleImg1	SimpleImages to describe ModelImage data, simpleImg2 is always registered image
private ModelSimpleImage	simpleImg2	SimpleImages to describe ModelImage data, simpleImg2 is always registered image
private TransMatrix	tMatrix	Initial transmatrix for cost functions

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

baseImage, matchImage, resultImage

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogRegistrationValidation()	Empty constructor needed for dynamic instantiation (used during scripting).
JDialogRegistrationValidation(Frame theParentFrame, ModelImage im)	Creates new registration dialog to get base image name.
JDialogRegistrationValidation(Frame theParentFrame, ModelImage _mi, ModelImage _ri)	Creates a new JDialogRegistrationValidation object, used for bypassing the GUI.

Method Summary

Modifier and Type	Method	Description
void	algorithmPerformed(AlgorithmBase algorithm)	This method is required if the AlgorithmPerformed interface is implemented.
private void	callAlgorithm(int costChoice)	Method for calling various cost algorithms, should only be called after registered image is created.
protected void	init()	Initializes GuserInterface components and displays dialog.
private void	runCostFunctions(ModelImage image)	calls the various cost functions
private boolean	setCostVariables()

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogRegistrationLeastSquares

actionPerformed, buildExtentsPanel, buildImagePanel, callAlgorithm, doPostAlgorithmActions, getLSCompleted, getResultImage, getResultMatrix, itemStateChanged, setFillValue, setGUIFromParams, setMatrixDirectory, setOutOfBoundsIndex, storeParamsFromGUI

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

doCorrelationRatioSmoothed

private JCheckBox doCorrelationRatioSmoothed

Whether the available cost functions should be performed

doMutualInfoSmoothed

private JCheckBox doMutualInfoSmoothed

Whether the available cost functions should be performed

doNormMutualInfoSmoothed

private JCheckBox doNormMutualInfoSmoothed

Whether the available cost functions should be performed

doNormXCorr

private JCheckBox doNormXCorr

Whether the available cost functions should be performed

currentCostFunct

private String currentCostFunct

Description of the cost function being performed

algoCost

private AlgorithmOptimizeFunctionBase algoCost

Algorithm that implement cost functions, either a AlgorithmCostFunctions or AlgorithmCostFunctions2D

tMatrix

private TransMatrix tMatrix

Initial transmatrix for cost functions

simpleImg1

private ModelSimpleImage simpleImg1

SimpleImages to describe ModelImage data, simpleImg2 is always registered image

simpleImg2

private ModelSimpleImage simpleImg2

SimpleImages to describe ModelImage data, simpleImg2 is always registered image

bin1

private int bin1

Bin to use for pixel comparisons

Constructor Details

JDialogRegistrationValidation

public JDialogRegistrationValidation()

Empty constructor needed for dynamic instantiation (used during scripting).

JDialogRegistrationValidation

public JDialogRegistrationValidation(Frame theParentFrame,
 ModelImage im)

Creates new registration dialog to get base image name.

Parameters:

theParentFrame - Parent frame.

im - Source image.

JDialogRegistrationValidation

public JDialogRegistrationValidation(Frame theParentFrame,
 ModelImage _mi,
 ModelImage _ri)

Creates a new JDialogRegistrationValidation object, used for bypassing the GUI.

Parameters:

theParentFrame - Parent frame.

_mi - Source image.

_ri - Image to register against.

Method Details

init

protected void init()

Description copied from class: JDialogRegistrationLeastSquares

Initializes GuserInterface components and displays dialog.

Overrides:

init in class JDialogRegistrationLeastSquares

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete.

Specified by:

algorithmPerformed in interface AlgorithmInterface

Overrides:

algorithmPerformed in class JDialogRegistrationLeastSquares

Parameters:

algorithm - Algorithm that caused the event.

runCostFunctions

private void runCostFunctions(ModelImage image)

calls the various cost functions

Parameters:

image - the image to compare to the registered image

setCostVariables

private boolean setCostVariables()

callAlgorithm

private void callAlgorithm(int costChoice)

Method for calling various cost algorithms, should only be called after registered image is created.

Parameters:

costChoice - DOCUMENT ME!