Package gov.nih.mipav.model.file

Class FileInfoMicroCat

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoMicroCat

All Implemented Interfaces:

Serializable, Cloneable

public class FileInfoMicroCat
extends FileInfoBase

This structures contains the information that describes how.

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private String	autoStartCBREngine	DOCUMENT ME!
private String	baseNameforReconstructedSlices	DOCUMENT ME!
private String	CATFileName	DOCUMENT ME!
private String	CBRHostName	DOCUMENT ME!
private String	CBRImageDirectory	DOCUMENT ME!
private String	CBRProjectionDirectory	DOCUMENT ME!
private int	cylinderReconstruction	DOCUMENT ME!
private int	enableStepSize	DOCUMENT ME!
private String	filterType	DOCUMENT ME!
private String	imageDestinationDirectory	DOCUMENT ME!
private float	logScale	DOCUMENT ME!
private int	numberOfProjections	DOCUMENT ME!
private String	projectionDataAlreadyOnCBR	DOCUMENT ME!
private int	projectionUSize	DOCUMENT ME!
private int	projectionVSize	DOCUMENT ME!
private int	rotationDirection	DOCUMENT ME!
private String	RPCPortNum	DOCUMENT ME!
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private float	startAngle	DOCUMENT ME!
private String	stepSizeFile	DOCUMENT ME!
private int	timeoutBetweenProjectionTransfers	DOCUMENT ME!
private int	UCenterOffset	DOCUMENT ME!
private int	VCenterOffset	DOCUMENT ME!
private float	volumeOriginX	DOCUMENT ME!
private float	volumeOriginY	DOCUMENT ME!
private float	volumeOriginZ	DOCUMENT ME!
private int	volumeSizeX	DOCUMENT ME!
private int	volumeSizeY	DOCUMENT ME!
private int	volumeSizeZ	DOCUMENT ME!
private float	voxelSizeX	DOCUMENT ME!
private float	voxelSizeY	DOCUMENT ME!
private float	voxelSizeZ	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, dtiParams, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoMicroCat(String name, String directory, int format)	File info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
String	getBaseNameforReconstructedSlices()	Accessor to get baseNameforReconstructedSlices.
int	getVolumeSizeX()	Accessor to get volumeSizeX.
int	getVolumeSizeY()	Accessor to get volumeSizeY.
int	getVolumeSizeZ()	Accessor to get volumeSizeZ.
float	getVoxelSizeX()	Accessor to get voxelSizeX.
float	getVoxelSizeY()	Accessor to get voxelSizeY.
float	getVoxelSizeZ()	Accessor to get voxelSizeZ.
void	setAutoStartCBREngine(String s)	Accessor to set autoStartCBREngine.
void	setBaseNameforReconstructedSlices(String s)	Accessor to set baseNameforReconstructedSlices.
void	setCATFileName(String s)	Accessor to set CATFileName.
void	setCBRHostName(String s)	Accessor to set CBRHostName.
void	setCBRImageDirectory(String s)	Accessor to set CBRImageDirectory.
void	setCBRProjectionDirectory(String s)	Accessor to set CBRProjectionDirectory.
void	setCylinderReconstruction(int x)	Accessor to set cylinderReconstruction.
void	setEnableStepSize(int x)	Accessor to set enableStepSize.
void	setFilterType(String s)	Accessor to set filterType.
void	setImageDestinationDirectory(String s)	Accessor to set imageDestinationDirectory.
void	setLogScale(float f)	Accessor to set logScale.
void	setNumberOfProjections(int x)	Accessor to set numberOfProjections.
void	setProjectionDataAlreadyOnCBR(String s)	Accessor to set projectionDataAlreadyOnCBR.
void	setProjectionUSize(int x)	Accessor to set projectionUSize.
void	setProjectionVSize(int x)	Accessor to set projectionVSize.
void	setRotationDirection(int x)	Accessor to set rotationDirection.
void	setRPCPortNum(String s)	Accessor to set RPCPortNum.
void	setStartAngle(float f)	Accessor to set startAngle.
void	setStepSizeFile(String s)	Accessor to set stepSizeFile.
void	setTimeoutBetweenProjectionTransfers(int x)	Accessor to set timeoutBetweenProjectionTransfers.
void	setUCenterOffset(int x)	Accessor to set UCenterOffset.
void	setVCenterOffset(int x)	Accessor to set VCenterOffset.
void	setVolumeOriginX(float f)	Accessor to set volumeOriginX.
void	setVolumeOriginY(float f)	Accessor to set volumeOriginY.
void	setVolumeOriginZ(float f)	Accessor to set volumeOriginZ.
void	setVolumeSizeX(int x)	Accessor to set volumeSizeX.
void	setVolumeSizeY(int x)	Accessor to set volumeSizeY.
void	setVolumeSizeZ(int x)	Accessor to set volumeSizeZ.
void	setVoxelSizeX(float f)	Accessor to set voxelSizeX.
void	setVoxelSizeY(float f)	Accessor to set voxelSizeY.
void	setVoxelSizeZ(float f)	Accessor to set voxelSizeZ.

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getDTIParameters, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setDTIParameters, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

autoStartCBREngine

private String autoStartCBREngine

DOCUMENT ME!

baseNameforReconstructedSlices

private String baseNameforReconstructedSlices

DOCUMENT ME!

CATFileName

private String CATFileName

DOCUMENT ME!

CBRHostName

private String CBRHostName

DOCUMENT ME!

CBRImageDirectory

private String CBRImageDirectory

DOCUMENT ME!

CBRProjectionDirectory

private String CBRProjectionDirectory

DOCUMENT ME!

cylinderReconstruction

private int cylinderReconstruction

DOCUMENT ME!

enableStepSize

private int enableStepSize

DOCUMENT ME!

filterType

private String filterType

DOCUMENT ME!

imageDestinationDirectory

private String imageDestinationDirectory

DOCUMENT ME!

logScale

private float logScale

DOCUMENT ME!

numberOfProjections

private int numberOfProjections

DOCUMENT ME!

projectionDataAlreadyOnCBR

private String projectionDataAlreadyOnCBR

DOCUMENT ME!

projectionUSize

private int projectionUSize

DOCUMENT ME!

projectionVSize

private int projectionVSize

DOCUMENT ME!

rotationDirection

private int rotationDirection

DOCUMENT ME!

RPCPortNum

private String RPCPortNum

DOCUMENT ME!

startAngle

private float startAngle

DOCUMENT ME!

stepSizeFile

private String stepSizeFile

DOCUMENT ME!

timeoutBetweenProjectionTransfers

private int timeoutBetweenProjectionTransfers

DOCUMENT ME!

UCenterOffset

private int UCenterOffset

DOCUMENT ME!

VCenterOffset

private int VCenterOffset

DOCUMENT ME!

volumeOriginX

private float volumeOriginX

DOCUMENT ME!

volumeOriginY

private float volumeOriginY

DOCUMENT ME!

volumeOriginZ

private float volumeOriginZ

DOCUMENT ME!

volumeSizeX

private int volumeSizeX

DOCUMENT ME!

volumeSizeY

private int volumeSizeY

DOCUMENT ME!

volumeSizeZ

private int volumeSizeZ

DOCUMENT ME!

voxelSizeX

private float voxelSizeX

DOCUMENT ME!

voxelSizeY

private float voxelSizeY

DOCUMENT ME!

voxelSizeZ

private float voxelSizeZ

DOCUMENT ME!

Constructor Details

FileInfoMicroCat

public FileInfoMicroCat(String name,
 String directory,
 int format)

File info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Details

displayAboutInfo

public void displayAboutInfo(JDialogBase dlog,
 TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - Dialog box that is written to

matrix - Transformation matrix

getBaseNameforReconstructedSlices

public String getBaseNameforReconstructedSlices()

Accessor to get baseNameforReconstructedSlices.

Returns:

baseNameforReconstructedSlices

getVolumeSizeX

public int getVolumeSizeX()

Accessor to get volumeSizeX.

Returns:

volumeSizeX

getVolumeSizeY

public int getVolumeSizeY()

Accessor to get volumeSizeY.

Returns:

volumeSizeY

getVolumeSizeZ

public int getVolumeSizeZ()

Accessor to get volumeSizeZ.

Returns:

volumeSizeZ

getVoxelSizeX

public float getVoxelSizeX()

Accessor to get voxelSizeX.

Returns:

voxelSizeX

getVoxelSizeY

public float getVoxelSizeY()

Accessor to get voxelSizeY.

Returns:

voxelSizeY

getVoxelSizeZ

public float getVoxelSizeZ()

Accessor to get voxelSizeZ.

Returns:

voxelSizeZ

setAutoStartCBREngine

public void setAutoStartCBREngine(String s)

Accessor to set autoStartCBREngine.

Parameters:

s - String to set it to.

setBaseNameforReconstructedSlices

public void setBaseNameforReconstructedSlices(String s)

Accessor to set baseNameforReconstructedSlices.

Parameters:

s - String to set it to.

setCATFileName

public void setCATFileName(String s)

Accessor to set CATFileName.

Parameters:

s - String to set it to.

setCBRHostName

public void setCBRHostName(String s)

Accessor to set CBRHostName.

Parameters:

s - String to set it to.

setCBRImageDirectory

public void setCBRImageDirectory(String s)

Accessor to set CBRImageDirectory.

Parameters:

s - String to set it to.

setCBRProjectionDirectory

public void setCBRProjectionDirectory(String s)

Accessor to set CBRProjectionDirectory.

Parameters:

s - String to set it to.

setCylinderReconstruction

public void setCylinderReconstruction(int x)

Accessor to set cylinderReconstruction.

Parameters:

x - Int to set it to.

setEnableStepSize

public void setEnableStepSize(int x)

Accessor to set enableStepSize.

Parameters:

x - Int to set it to.

setFilterType

public void setFilterType(String s)

Accessor to set filterType.

Parameters:

s - String to set it to.

setImageDestinationDirectory

public void setImageDestinationDirectory(String s)

Accessor to set imageDestinationDirectory.

Parameters:

s - String to set it to.

setLogScale

public void setLogScale(float f)

Accessor to set logScale.

Parameters:

f - Float to set it to.

setNumberOfProjections

public void setNumberOfProjections(int x)

Accessor to set numberOfProjections.

Parameters:

x - Int to set it to.

setProjectionDataAlreadyOnCBR

public void setProjectionDataAlreadyOnCBR(String s)

Accessor to set projectionDataAlreadyOnCBR.

Parameters:

s - String to set it to.

setProjectionUSize

public void setProjectionUSize(int x)

Accessor to set projectionUSize.

Parameters:

x - Int to set it to.

setProjectionVSize

public void setProjectionVSize(int x)

Accessor to set projectionVSize.

Parameters:

x - Int to set it to.

setRotationDirection

public void setRotationDirection(int x)

Accessor to set rotationDirection.

Parameters:

x - Int to set it to.

setRPCPortNum

public void setRPCPortNum(String s)

Accessor to set RPCPortNum.

Parameters:

s - String to set it to.

setStartAngle

public void setStartAngle(float f)

Accessor to set startAngle.

Parameters:

f - Float to set it to.

setStepSizeFile

public void setStepSizeFile(String s)

Accessor to set stepSizeFile.

Parameters:

s - String to set it to.

setTimeoutBetweenProjectionTransfers

public void setTimeoutBetweenProjectionTransfers(int x)

Accessor to set timeoutBetweenProjectionTransfers.

Parameters:

x - Int to set it to.

setUCenterOffset

public void setUCenterOffset(int x)

Accessor to set UCenterOffset.

Parameters:

x - Int to set it to.

setVCenterOffset

public void setVCenterOffset(int x)

Accessor to set VCenterOffset.

Parameters:

x - Int to set it to.

setVolumeOriginX

public void setVolumeOriginX(float f)

Accessor to set volumeOriginX.

Parameters:

f - Float to set it to.

setVolumeOriginY

public void setVolumeOriginY(float f)

Accessor to set volumeOriginY.

Parameters:

f - Float to set it to.

setVolumeOriginZ

public void setVolumeOriginZ(float f)

Accessor to set volumeOriginZ.

Parameters:

f - Float to set it to.

setVolumeSizeX

public void setVolumeSizeX(int x)

Accessor to set volumeSizeX.

Parameters:

x - Int to set it to.

setVolumeSizeY

public void setVolumeSizeY(int x)

Accessor to set volumeSizeY.

Parameters:

x - Int to set it to.

setVolumeSizeZ

public void setVolumeSizeZ(int x)

Accessor to set volumeSizeZ.

Parameters:

x - Int to set it to.

setVoxelSizeX

public void setVoxelSizeX(float f)

Accessor to set voxelSizeX.

Parameters:

f - Float to set it to.

setVoxelSizeY

public void setVoxelSizeY(float f)

Accessor to set voxelSizeY.

Parameters:

f - Float to set it to.

setVoxelSizeZ

public void setVoxelSizeZ(float f)

Accessor to set voxelSizeZ.

Parameters:

f - Float to set it to.