Package gov.nih.mipav.view.dialogs

Class JDialogDeconvolution

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.dialogs.JDialogBase

gov.nih.mipav.view.dialogs.JDialogScriptableBase

gov.nih.mipav.view.dialogs.JDialogDeconvolution

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class JDialogDeconvolution
extends JDialogScriptableBase
implements AlgorithmInterface, ActionDiscovery

See Also:

• OpenCLAlgorithmDeconvolution
• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private JPanelColorChannels	colorChannelPanel	for processing color images
private JCheckBox	conversionFactorCheckbox	sigma conversion factor is by 1.0 / (2*Math.sqrt(2*Math.log(2)))
private ModelImage	image	Source image.
private ModelImage	imageB	Source image.
private int	method
private JPanelAlgorithmOutputOptions	outputOptionsPanel	output to a new image or overwite the current image
private ModelImage	resultImage	Result image.
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private JTextField[]	textGaussX	gui, sigma value
private JTextField[]	textGaussY	gui, sigma value
private JTextField[]	textGaussZ	gui, sigma value
private JTextField	textIterations
private String[]	titles	locks the frame title
private ViewUserInterface	userInterface	locking the image

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JDialogDeconvolution()	Empty constructor needed for dynamic instantiation.
JDialogDeconvolution(Frame theParentFrame, ModelImage im, ModelImage imB)	Construct the deconvolution blur dialog.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Closes dialog box when the OK button is pressed and calls the algorithm.
void	algorithmPerformed(AlgorithmBase algorithm)	This method is required if the AlgorithmPerformed interface is implemented.
protected void	callAlgorithm()	Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
ParameterTable	createInputParameters()	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
ParameterTable	createOutputParameters()	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
protected void	doPostAlgorithmActions()	Perform any actions required after the running of the algorithm is complete.
ActionMetadata	getActionMetadata()	Return meta-information about this discoverable action for categorization and labeling purposes.
String	getOutputImageName(String imageParamName)	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
ModelImage	getResultImage()	Accessor that returns the image.
private void	init()	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
private JPanel	initGUI(int index, boolean dualImage, String postfix)	Initialize the Sigma Panel
boolean	isActionComplete()	Returns whether the action has successfully completed its execution.
protected void	setGUIFromParams()	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
protected void	storeParamsFromGUI()	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

scriptRun

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

colorChannelPanel

private JPanelColorChannels colorChannelPanel

for processing color images

image

private ModelImage image

Source image.

imageB

private ModelImage imageB

Source image.

outputOptionsPanel

private JPanelAlgorithmOutputOptions outputOptionsPanel

output to a new image or overwite the current image

resultImage

private ModelImage resultImage

Result image.

textIterations

private JTextField textIterations

titles

private String[] titles

locks the frame title

userInterface

private ViewUserInterface userInterface

locking the image

conversionFactorCheckbox

private JCheckBox conversionFactorCheckbox

sigma conversion factor is by 1.0 / (2*Math.sqrt(2*Math.log(2)))

textGaussX

private JTextField[] textGaussX

gui, sigma value

textGaussY

private JTextField[] textGaussY

gui, sigma value

textGaussZ

private JTextField[] textGaussZ

gui, sigma value

method

private int method

Constructor Details

JDialogDeconvolution

public JDialogDeconvolution()

Empty constructor needed for dynamic instantiation.

JDialogDeconvolution

public JDialogDeconvolution(Frame theParentFrame,
 ModelImage im,
 ModelImage imB)

Construct the deconvolution blur dialog.

Parameters:

theParentFrame - Parent frame.

im - Source image.

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Closes dialog box when the OK button is pressed and calls the algorithm.

Specified by:

actionPerformed in interface ActionListener

Overrides:

actionPerformed in class JDialogBase

Parameters:

event - Event that triggers function.

algorithmPerformed

public void algorithmPerformed(AlgorithmBase algorithm)

This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.

Specified by:

algorithmPerformed in interface AlgorithmInterface

Parameters:

algorithm - Algorithm that caused the event.

createInputParameters

public ParameterTable createInputParameters()

Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).

Specified by:

createInputParameters in interface ActionDiscovery

Returns:

A parameter table listing the inputs of this algorithm.

createOutputParameters

public ParameterTable createOutputParameters()

Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).

Specified by:

createOutputParameters in interface ActionDiscovery

Returns:

A parameter table listing the outputs of this algorithm.

getActionMetadata

public ActionMetadata getActionMetadata()

Return meta-information about this discoverable action for categorization and labeling purposes.

Specified by:

getActionMetadata in interface ActionDiscovery

Returns:

Metadata for this action.

getOutputImageName

public String getOutputImageName(String imageParamName)

Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).

Specified by:

getOutputImageName in interface ActionDiscovery

Parameters:

imageParamName - The output image parameter label for which to get the image name.

Returns:

The image name of the requested output image parameter label.

getResultImage

public ModelImage getResultImage()

Accessor that returns the image.

Returns:

The result image.

isActionComplete

public boolean isActionComplete()

Returns whether the action has successfully completed its execution.

Specified by:

isActionComplete in interface ActionDiscovery

Returns:

True, if the action is complete. False, if the action failed or is still running.

callAlgorithm

protected void callAlgorithm()

Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.

Specified by:

callAlgorithm in class JDialogScriptableBase

doPostAlgorithmActions

protected void doPostAlgorithmActions()

Perform any actions required after the running of the algorithm is complete.

Overrides:

doPostAlgorithmActions in class JDialogScriptableBase

setGUIFromParams

protected void setGUIFromParams()

Description copied from class: JDialogScriptableBase

Set the dialog GUI using the script parameters while running this algorithm as part of a script.

Specified by:

setGUIFromParams in class JDialogScriptableBase

storeParamsFromGUI

protected void storeParamsFromGUI()
                           throws ParserException

Description copied from class: JDialogScriptableBase

Record the parameters just used to run this algorithm in a script.

Specified by:

storeParamsFromGUI in class JDialogScriptableBase

Throws:

ParserException - If there is a problem creating/recording the new parameters.

init

private void init()

Sets up the GUI (panels, buttons, etc) and displays it on the screen.

initGUI

private JPanel initGUI(int index,
 boolean dualImage,
 String postfix)

Initialize the Sigma Panel